studium 0.13.1

data/lib/studium/yaml/curricula/outdated/master_bioinformatics_and_molecular_biotechnology_including_aspects_from_molecular_medicine.yml

@@ -0,0 +1,438 @@
+# =========================================================================== #
+# === Mastercurriculum (Bio)Informatics and molecular biotechnology including aspects from molecular medicine
+#
+# Note that this curriculum is held in english.
+# =========================================================================== #
+# ectszuteilung --indi4
+# =========================================================================== #
+# Attribution:
+#
+#   BOKU Wien       45.0 ECTS points (50.0%)
+#   Uni Wien        26.0 ECTS points (28.9%)
+#   TU Wien         16.0 ECTS points (17.8%)
+#   Meduni Wien      3.0 ECTS points ( 3.3%)
+#
+#                   90.0 ECTS points
+#
+# =========================================================================== #
+# Mastercurriculum Biotechnology                                                    (066418) → 43.0 ECTS points [ BOKU Wien  ] [47.8%]
+# Mastercurriculum Technische Chemie                                                (066490) → 13.0 ECTS points [  TU Wien   ] [14.4%]
+# Mastercurriculum Molekulare Biologie                                              (066834) →  9.0 ECTS points [  Uni Wien  ] [10.0%]
+# Mastercurriculum Molekulare Mikrobiologie, Mikrobielle Ökologie und Immunbiologie (066830) →  8.0 ECTS points [  Uni Wien  ] [ 8.9%]
+# Mastercurriculum Computational Science                                            (066910) →  6.0 ECTS points [  Uni Wien  ] [ 6.7%]
+# Mastercurriculum Biologische Chemie                                               (066863) →  6.0 ECTS points [  Uni Wien  ] [ 6.7%]
+# Mastercurriculum Food Science and Technology                                      (066417) →  5.0 ECTS points [ BOKU Wien  ] [ 5.6%]
+# Mastercurriculum European Master in Animal Breeding and Genetics                  (066450) →  4.0 ECTS points [ BOKU Wien  ] [ 4.4%]
+# Mastercurriculum Safety in the Food Chain                                         (066451) →  3.0 ECTS points [ BOKU Wien  ] [ 3.3%]
+# Mastercurriculum Umwelt- und Bioressourcenmanagement                              (066427) →  3.0 ECTS points [ BOKU Wien  ] [ 3.3%]
+# Mastercurriculum Biotechnologie und Bioanalytik                                   (066495) →  3.0 ECTS points [  TU Wien   ] [ 3.3%]
+# Mastercurriculum Pharmazie                                                        (066605) →  3.0 ECTS points [  Uni Wien  ] [ 3.3%]
+# Mastercurriculum Medizinische Informatik                                          (066936) →  3.0 ECTS points [Meduni Wien ] [ 3.3%]
+# Mastercurriculum Chemie                                                           (066862) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# Mastercurriculum Bioinformatik                                                    (066875) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# Mastercurriculum Ecology and Ecosystems                                           (066833) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# Mastercurriculum Evolutionary Systems Biology                                     (066220) →  2.0 ECTS points [  Uni Wien  ] [ 2.2%]
+# Mastercurriculum Genetik und Entwicklungsbiologie                                 (066877) →  1.0 ECTS points [  Uni Wien  ] [ 1.1%]
+# =========================================================================== #
+
+# =========================================================================== #
+# === Module M1
+#
+# Name:   Selected aspects from modern Bioinformatics
+# n ECTS: 8.0
+#
+# Prerequisites:
+# None.
+#
+# Objectives for Module M1:
+#
+# The students acquire essential as well as advanced knowledge from the
+# wide field of modern bioinformatics encompassing different topics.
+#
+# This domain-specific knowledge not only provides a general introduction
+# to relevant computational concepts used in a select subset of the life
+# sciences field, but additionally focuses on certain key topics, such
+# as analysing NGS datasets or different microarray (and related biochip)
+# technology as these may be used (e. g. "lab-on-a-chip" setups), as
+# well as algorithms, techniques and software that can be used for
+# 3D structure prediction of different biopolymers.
+#
+# Thus, this module is of relevance for later, more specialized sequence
+# data analysis, including different algorithms and data analysis 
+# employed in order to solve related tasks (such as through the
+# programming language R).
+#
+# Upon successful completion of this module the participants will have
+# acquired knowledge in how to do a proper experimental setup, knowing
+# how to transform different experimental datasets into
+# statistically-verified datapoints.
+#
+# Additionally, the students will have a thorough understanding over
+# the current scientific literature, including adequate scientific
+# presentation and subsequent discussions of different important
+# papers from the wide field of bioinformatics.
+# =========================================================================== #
+790383 Bioinformatics: Selected aspects (in Eng.)                                            # 3.0 ECTS, VU, BOKU
+790389 Modern bioinformatics (in Eng.)                                                       # 2.0 ECTS, VU, BOKU
+301578 Spezielle Themen der Bioinformatik                                                    # 3.0 ECTS, VO, Uni Wien
+
+# =========================================================================== #
+# === Module M2
+#
+# Name:   Sequence Data Analysis and NGS
+# n ECTS: 15.0
+#
+# Prerequisites:
+#
+# → Module M1:  Selected aspects from modern Bioinformatics
+#
+# Objectives for Module M2:
+#
+# After having completed Module M1, thus having acquired essential
+# knowledge from different fields of bioinformatics, the participants
+# will increase their knowledge in regards to different datasets
+# used in modern bioinformatics, including relevant hands-on
+# training. Module M2 serves as a central module in this
+# curriculum, reflected by the amount of ECTS credits attributed
+# to this module.
+#
+# The linear order of the courses attributed to this Module is
+# recommended. Thus, the students will first acquire a specialized
+# set of knowledge working on *nix-related computer systems 
+# primarily (although this may be equally applicable to windows
+# as well, if the WSL is available). They will learn different
+# strategies in how to analyse complex datasets in a "hands-on"
+# manner, including graphical depictions through R, gnuplot and
+# related software suites.
+#
+# Through course 790394, based on the knowledge gained through
+# course 791381, the students will acquire detailed knowledge
+# how to analyse high-throughput sequencing data in general,
+# with a focus on the Illumina and Pacific Biosciences sequencing
+# platforms. Based on these two courses, the students will then
+# extend their knowledge into different analysis of different
+# genomic datasets, including analysis of the RNA structure
+# and models for prediction of secondary structures in RNA
+# (e. g. through the ViennaRNA software suite).
+#
+# After having successfully completed this module, the students will
+# have acquired a very detailed and thorough overview, which may
+# serve as a further basis for their own research activities, as
+# well as being relevant for secondary topics, such as in
+# biotechnology (as an applied science) and in molecular
+# medicine/immunology. It provides a solid framework for
+# extensive computer-related considerations, including a
+# significant amount of practical experience.
+# =========================================================================== #
+791381 Essentials for bioinformatics data analysis (in Eng.)                                 # 3.0 ECTS, 2.0 SWS, VU, BOKU
+790394 Sequencing data analysis (in Eng.)                                                    # 3.0 ECTS, VU, BOKU
+790382 High throughput sequencing and genome analysis (in Eng.)                              # 3.0 ECTS, VU, BOKU
+790379 Using bioinformatics for expression profiling by next generation sequencing (in Eng.) # 2.0 ECTS, VU, BOKU
+270065 Praktikum zu Bioinformatischen Problemen aus Chemie und Biologie                      # 4.0 ECTS, UE, UNI WIEN
+
+# =========================================================================== #
+# === Module M3
+#
+# Name:   Computational Concepts in Biology
+# n ECTS: 6.0
+#
+# Prerequisites:
+#
+# → Module M1:  Selected aspects from modern Bioinformatics
+# → Module M2:  Sequence Data Analysis and NGS
+#
+# Objectives for Module M3:
+#
+# Module M3 focuses on a specific subset from the field of computational
+# concepts that are essential and applicable to both (molecular) biology
+# and bioinformatics. The prospective graduates will, upon successful
+# completion of this module, understand the computational costs associated
+# with different, special algorithms used in bioinformatics in particular,
+# how to use and apply suffix trees to specific problems, how to
+# approach sequence analysis, such as through RNA-Seq or microarrays, thus
+# showing an inter-related topic to other modules, or how to apply a
+# binary search through a given (large) dataset.
+#
+# That way, Module M3 also focuses on specific algorithms that may be
+# of further use, including Monte Carlo analysis and other algorithms
+# or strategies.
+#
+# The prospective graduates will additionally have acquired some knowledge
+# from the field of pharmacoinformatics, through the course 269004
+# Computational Concepts in Biology I.
+#
+# The fairly compact module M3 thus can be considered as a further
+# specialization with a focus on computational strategies and
+# extends the knowledge of the prospective graduates into relevant
+# areas.
+# =========================================================================== #
+269004 Computational Concepts in Biology I                                                 # 3.0 ECTS, VO, Uni Wien
+269020 Computational Concepts in Biology II                                                # 3.0 ECTS, VO, Uni Wien
+
+# =========================================================================== #
+# === Module M4
+#
+# Name:   Machine Learning, Artificial Intelligence and current topics in bioinformatics
+# n ECTS: 10.0
+#
+# Prerequisites:
+#
+# → Module M1:  Selected aspects from modern Bioinformatics
+# → Module M2:  Sequence Data Analysis and NGS
+# → Module M3:  Computational Concepts in Biology
+#
+# Objectives for Module M4:
+#
+# Building upon prior knowledge gained through the first three modules
+# in this curriculum, the participants will acquire expertise in 
+# related concepts that cover different themes - in particular 
+# relevant key algorithms, including alignment and search strategies
+# in dataset derived from the life sciences field, as an extension
+# to the expertise acquired in Module M2.
+#
+# Furthermore, the students will specifically and extensively analyse
+# microarray datasets via R and FSPMA. As a larger extension and further
+# specialization, the students will have acquired detailed knowledge
+# about current "hot topics" in research, in particular in regards
+# to Machine Learning, Deep Learning, Pattern Recognition, and
+# Artificial Intelligence, which will allow them to programmatically
+# analyse complex datasets without the requirement of explicitly 
+# programming possible solutions - such as by making efficient use
+# of deterministic neural networks, bayesian neural networks, combined
+# with LASSO regressions, including potential and already existing
+# use cases in molecular medicine (e. g. disease-driven research).
+#
+# The students will present and discuss different current topics from
+# the field of bioinformatics and computational systems biology, in
+# particular in regards to the analysis of metabolic networks and
+# datasets obtained from proteomics.
+#
+# Upon successful completion of Module M4 the prospective graduates
+# will have a very thorough, deep and profound understanding of
+# different modern computational strategies, including hands-on
+# training in a select subset, as well as extensive knowledge
+# how modern strategies, such as from machine learning or
+# supervised/unsupervised, can be put to use in a
+# biotechnology/bioinformatics context. Due to courses such as
+# 300181, important inter-module cross-knowledge is improved, such
+# as towards Module M8 dealing with metabolic engineering and flux
+# analysis in general.
+# =========================================================================== #
+790391 Efficient microarray data analysis using R and FSPMA (in Eng.)                      # 1.0 ECTS, VU, BOKU
+790384 Machine learning and pattern recognition for bioinformatics (in Eng.)               # 4.0 ECTS, VU, BOKU
+840.001 Aktuelle Themen der Medizinischen Informatik - Artificial Intelligence             # 3.0 ECTS, VO, Meduni Wien
+300181 Current topics in bioinformatics and computational systems biology                  # 2.0 ECTS, SE, Uni Wien
+
+# =========================================================================== #
+# === Module M5
+#
+# Name:   Advanced concepts from Immunology
+# n ECTS: 9.0
+#
+# Prerequisites:
+#
+# No other Module from this curriculum is a prerequisite to Module M5, but
+# participants are required to have a demonstrated knowledge of various
+# basic concepts originating from immunological concepts, thus constituting 
+# "foundational knowledge in immunology" of at the least 4.0 ECTS credits.
+#
+# Objectives for Module M5:
+#
+# Upon successful completion of Module M5, the prospective graduates
+# will understand vaccine-driven research, antigenes, antibody
+# engineering as well as concepts from modern applied virology.
+#
+# The primary objective for Module M5 is to extend the knowledge of
+# the participants into different core immunological aspects, as means
+# of a general extensions towards other topics from molecular
+# medicine and applied biotechnology, including novel considerations
+# in other modules (such as the course "322054 Human Gene Therapy").
+# =========================================================================== #
+790305 Antigene und Impfstoffe                                                           #  3.0 ECTS, VO, BOKU
+790398 Antibody engineering (in Eng.)                                                    #  3.0 ECTS, VO, BOKU
+790310 Applied virology (in Eng.)                                                        #  3.0 ECTS, VO, BOKU
+
+# =========================================================================== #
+# === Module M6
+#
+# Name:   Advanced concepts from Molecular Medicine
+# n ECTS: 16.0
+#
+# Prerequisites:
+#
+# → Module M5:  Advanced concepts from Immunology
+#
+# Objectives for Module M6:
+#
+# Module M6 focuses on different topics from molecular medicine, and
+# a few related aspects, such as bioanalytics for identifying relevant
+# biomarkers, stem cells or gene therapy. The primary focus is on
+# agents that cause disease on the molecular level, though.
+#
+# The prospective graduates will, upon successful completion of
+# this module, have acquired an extremely thorough and detailed
+# knowledge from the field of molecular medicine, and related
+# aspects, including different stem cell types, their use in
+# biotechnology and gene therapy, the application and strategies
+# used in gene therapy research (including special mice strains),
+# the view of molecular medicine from nanotechnology, 
+#
+# The module intensifies knowledge both in regards to important
+# causative agents in disease, as well as applications and
+# strategies for the treatment of such diseases, including
+# related topics such as regenerative medicine in general
+# and cell based therapies. Following on the latter topic,
+# different biomarkers, in particular the stratification
+# biomarkers, are discussed in more detail as basis for
+# individualized (personalized) medicine, such as used in
+# oncology or for the monitoring of progress during a
+# therapy.
+#
+# The graduates will also be able to explain how a lead compound
+# can give rise to a clinical drug, including relevant regulatory
+# and law-specific aspects of clinical trials. The graduates
+# are able to explain pharmacodynamic properties of different
+# key compounds, as well as explain the ADME concept for
+# distribution of compounds in eukaryotes such as the human
+# body or mouse models.
+# =========================================================================== #
+322056 Introduction to Nanomedicine: Nucleic acid therapy and Bioimaging - M14           #  1.0 ECTS, VO, Uni Wien
+301589 Literaturseminar Molekulare Medizin                                               #  1.0 ECTS, SE, Uni Wien
+322054 Human Gene Therapy: From basics to clinical applications - M14                    #  1.0 ECTS, VO, Uni Wien
+301585 Molekulare Medizin 1                                                              #  2.0 ECTS, VO, Uni Wien
+301586 Molekulare Medizin 2                                                              #  3.0 ECTS, VO, Uni Wien
+301324 Peroxisomes in Health and Disease                                                 #  2.0 ECTS, VO, Uni Wien
+790367 Stem cells and tissue engineering (in Eng.)                                       #  3.0 ECTS, VO, BOKU
+791364 Preclinical studies (in Eng.)                                                     #  1.0 ECTS, VO, BOKU
+442706 Bioanalytische Methoden zur Identifikation und Evaluierung von Biomarkern         #  2.0 ECTS, VO, Uni Wien
+
+# =========================================================================== #
+# === Module M7
+#
+# Name:   Biochemistry, Protein Engineering, Molecular Biology and Biotechnology
+# n ECTS: 17.0
+#
+# Prerequisites:
+#
+# No other Module from this curriculum is a prerequisite to Module M7, but
+# participants are required to have a demonstrated knowledge of various
+# basics originating from molecular biology, biochemistry and biotechnology,
+# thus constituting "foundational knowledge" in these varied topics.
+#
+# Objectives for Module M7:
+#
+# Module M7 consists mostly of practical hands-on activities pertaining
+# to biochemistry, protein engineering, molecular biology, biotechnology
+# and somewhat related aspects such as strain improvement. After
+# successful completion of this module the students will have acquired
+# a very detailed and thorough knowledge from different methods used
+# in gene technology and modern biotechnology. This includes techniques
+# used in analytics of nucleotides, genome analysis as well as 
+# investigation of the chromatin structure and different epigenetic
+# modification found in genomes as well as various commonly employed
+# methods in biotechnology (transformation of eukaryotic microorganisms,
+# mRNA isolation, cDNA synthesis, qPCR, recombination cloning,
+# in-silico gene analysis, primer design, cloning of expression
+# vectors, cultivation of microorganisms and expression of a
+# heterologous protein, analysis of protein-DNA interactions and
+# radioactive enzyme assay, among other methods).
+#
+# Protein engineering allows for the customization of different proteins,
+# such as adaptation for a different pH-value or different binding
+# strength to other proteins.
+#
+# As a small extension towards proteins in a living cell, the students
+# will acquire detailed knowledge about how proteins are transported
+# and sorted in mammalian cells, including different strategies how
+# to analyse this adequately.
+#
+# Upon successful completion of this module, the students are able
+# to understand and design different strategies for the optimization
+# of microorganisms employed in biotechnology.
+# =========================================================================== #
+166.691 Biochemie, Molekularbiologie und Biotechnologie                                  #  8.0 ECTS, LU, TU Wien
+752339 Protein engineering (in Eng.)                                                     #  2.0 ECTS, VU, BOKU
+166.156 Gentechnik und Industrielle Genomik                                              #  3.0 ECTS, VO, TU Wien
+790304 Strain improvement of microorganisms and higher eukaryotic cells (in Eng.)        #  3.0 ECTS, VS, BOKU
+301665 Protein Transport u. Sortierung in Säugetierzellen                                #  1.0 ECTS, SE+UE, Uni Wien
+
+# =========================================================================== #
+# === Module M8
+#
+# Name:   Synthetic Biology, Metabolic Engineering and Seminar in Biotechnology
+# n ECTS: 9.0
+#
+# Prerequisites:
+#
+# → Module M7: Biochemistry, Protein Engineering, Molecular Biology and Biotechnology
+#
+# Objectives for Module M8:
+#
+# Following Module M7, the students will acquire more knowledge from diverse
+# fields such as metabolic engineering, cell engineering and, in particular,
+# synthetic biology. The fairly compact Module M8 is meant to extend the
+# knowledge of the prospective graduates into related aspects from synthetic
+# biology.
+#
+# As a small extension towards module M7, but also in order to
+# explore potential applications for use in molecular medicine,
+# the students will actively participate in a seminar in
+# biotechnology, including giving a presentation about a
+# scientific topic from modern biolotechnology.
+# =========================================================================== #
+790356 Metabolic and cell engineering (in Eng.)                                          #  2.0 ECTS, VO, BOKU
+322065 Applied Bacterial Genetics - M14                                                  #  1.0 ECTS, VO, Uni Wien
+804402 Seminar synthetic biology (in Eng.)                                               #  2.0 ECTS, SE, BOKU
+166.647 Synthetische Biologie                                                            #  2.0 ECTS, VO, TU Vienna
+790377 Seminar in biotechnology (in Eng.)                                                #  2.0 ECTS, SE, BOKU
+
+# =========================================================================== #
+# === Module M9
+#
+# Name:   Mastermodule
+# n ECTS: 30.0
+#
+# Prerequisites:
+#
+# All other modules of this Master's programme have to be completed.
+#
+# Objectives for Module M9:
+#
+# The students demonstrate their ability to handle a scientific
+# master's thesis on their own.
+# =========================================================================== #
+# 790107 Mastermodule                                                     # 12.0 ECTS, SE, BOKU
+
+# =========================================================================== #
+# === Overview of the individual modules that are part of this programme:
+#
+# → Module M1:  Selected aspects from modern Bioinformatics (8.0)
+# → Module M2:  Sequence Data Analysis and NGS (15.0)
+# → Module M3:  Computational Concepts in Biology (6.0)
+# → Module M4:  Machine Learning, Artificial Intelligence and current topics in bioinformatics (10.0)
+# → Module M5:  Advanced concepts from Immunology (9.0)
+# → Module M6:  Advanced concepts from Molecular Medicine (16.0)
+# → Module M7:  Biochemistry, Protein Engineering, Molecular Biology and Biotechnology (17.0)
+# → Module M8:  Synthetic Biology, Metabolic Engineering and Seminar in Biotechnology (9.0)
+# → Module M9:  Mastermodule (30.0)
+#
+# =========================================================================== #
+
+# =========================================================================== #
+# === Economy
+# =========================================================================== #
+# 731311 Projektmanagement - Vertiefung                                                    # 3.0 ECTS, VU
+ 
+# =========================================================================== #
+# === Imaging
+# =========================================================================== #
+# 301272 Live imaging course                                                               #  1.0 ECTS, UE, Uni Wien
+# 300291 Elektronenmikroskopie in der Biologie - Methodik, Präparation und Interpretation  #  3.0 ECTS, VO, Uni Wien
+# 790014 Advanced light and chemical microscopy in life science (in Eng.)                  #  3.0 ECTS, VU, BOKU
+# 166.163 Biochemie II                                                                     #  6.0 ECTs, VO, TU Wien 
+# ^^^ alle boku bioinformatik sachen reingeben
+
+# =========================================================================== #
+# === Bioinformatics
+# =========================================================================== #
+# 301578 VO Spezielle Themen der Bioinformatik               # 3.0 ECTS, VO, Uni Wien

data/lib/studium/yaml/curricula/outdated/master_food_science_and_plant_biotechnology.yml

@@ -0,0 +1,31 @@
+# =========================================================================== #
+# === Mastercurriculum Food Science and Plant Biotechnology
+#
+# Note that this is not yet complete. This was probably an attempt for
+# an individual curriculum.
+# =========================================================================== #
+
+754317 Lebensmittelchemie für SIFC (in Eng.)            # 4.0 ECTS, VO
+754318 Lebensmittelchemie Übungen für SIFC (in Eng.)    # 3.0 ECTS, UE
+
+NFOK13004U Food Science and Culinary Techniques         # 7.5 ECTS
+
+752323 Lebensmitteltechnologische Übungen               # 5.0 ECTS, UE
+754345 Lebensmitteltoxikologie                          # 2.0 ECTS, VO
+754352 Produktentwicklung                               # 2.0 ECTS, VU
+
+
+
+
+754346 Lebensmittelsensorik
+754316 Lebensmittelmikrobiologie Übungen für SIFC (in Eng.)
+
+754325 Food Microbiology for SIFC (in Eng.)
+754319 Applied Quality Management Practical Course for SIFC (in Eng.)
+754310 Food Authenticity Practical Course (in Eng.)
+970301 Analysis of Bio-Hazards in Foods (in Eng.)
+Food Choice and Acceptance
+
+957325 Molecular Plant Breeding (in Eng.)
+941323 Molekularbiologie Übungen II
+851315 Angewandte Mathematik und Biostatistik für Biotechnologie