three-stdlib 2.24.2 → 2.25.1

package/loaders/NRRDLoader.js

@@ -1,401 +0,0 @@
-import { Loader, FileLoader, Vector3, Matrix4 } from "three";
-import { gunzipSync } from "fflate";
-import { Volume } from "../misc/Volume.js";
-class NRRDLoader extends Loader {
-  constructor(manager) {
-    super(manager);
-  }
-  load(url, onLoad, onProgress, onError) {
-    const scope = this;
-    const loader = new FileLoader(scope.manager);
-    loader.setPath(scope.path);
-    loader.setResponseType("arraybuffer");
-    loader.setRequestHeader(scope.requestHeader);
-    loader.setWithCredentials(scope.withCredentials);
-    loader.load(
-      url,
-      function(data) {
-        try {
-          onLoad(scope.parse(data));
-        } catch (e) {
-          if (onError) {
-            onError(e);
-          } else {
-            console.error(e);
-          }
-          scope.manager.itemError(url);
-        }
-      },
-      onProgress,
-      onError
-    );
-  }
-  parse(data) {
-    let _data = data;
-    let _dataPointer = 0;
-    const _nativeLittleEndian = new Int8Array(new Int16Array([1]).buffer)[0] > 0;
-    const _littleEndian = true;
-    const headerObject = {};
-    function scan(type, chunks) {
-      if (chunks === void 0 || chunks === null) {
-        chunks = 1;
-      }
-      let _chunkSize = 1;
-      let _array_type = Uint8Array;
-      switch (type) {
-        case "uchar":
-          break;
-        case "schar":
-          _array_type = Int8Array;
-          break;
-        case "ushort":
-          _array_type = Uint16Array;
-          _chunkSize = 2;
-          break;
-        case "sshort":
-          _array_type = Int16Array;
-          _chunkSize = 2;
-          break;
-        case "uint":
-          _array_type = Uint32Array;
-          _chunkSize = 4;
-          break;
-        case "sint":
-          _array_type = Int32Array;
-          _chunkSize = 4;
-          break;
-        case "float":
-          _array_type = Float32Array;
-          _chunkSize = 4;
-          break;
-        case "complex":
-          _array_type = Float64Array;
-          _chunkSize = 8;
-          break;
-        case "double":
-          _array_type = Float64Array;
-          _chunkSize = 8;
-          break;
-      }
-      let _bytes2 = new _array_type(_data.slice(_dataPointer, _dataPointer += chunks * _chunkSize));
-      if (_nativeLittleEndian != _littleEndian) {
-        _bytes2 = flipEndianness(_bytes2, _chunkSize);
-      }
-      if (chunks == 1) {
-        return _bytes2[0];
-      }
-      return _bytes2;
-    }
-    function flipEndianness(array, chunkSize) {
-      const u8 = new Uint8Array(array.buffer, array.byteOffset, array.byteLength);
-      for (let i2 = 0; i2 < array.byteLength; i2 += chunkSize) {
-        for (let j = i2 + chunkSize - 1, k = i2; j > k; j--, k++) {
-          const tmp = u8[k];
-          u8[k] = u8[j];
-          u8[j] = tmp;
-        }
-      }
-      return array;
-    }
-    function parseHeader(header) {
-      let data2, field, fn, i2, l, m, _i, _len;
-      const lines = header.split(/\r?\n/);
-      for (_i = 0, _len = lines.length; _i < _len; _i++) {
-        l = lines[_i];
-        if (l.match(/NRRD\d+/)) {
-          headerObject.isNrrd = true;
-        } else if (l.match(/^#/)) {
-        } else if (m = l.match(/(.*):(.*)/)) {
-          field = m[1].trim();
-          data2 = m[2].trim();
-          fn = _fieldFunctions[field];
-          if (fn) {
-            fn.call(headerObject, data2);
-          } else {
-            headerObject[field] = data2;
-          }
-        }
-      }
-      if (!headerObject.isNrrd) {
-        throw new Error("Not an NRRD file");
-      }
-      if (headerObject.encoding === "bz2" || headerObject.encoding === "bzip2") {
-        throw new Error("Bzip is not supported");
-      }
-      if (!headerObject.vectors) {
-        headerObject.vectors = [new Vector3(1, 0, 0), new Vector3(0, 1, 0), new Vector3(0, 0, 1)];
-        if (headerObject.spacings) {
-          for (i2 = 0; i2 <= 2; i2++) {
-            if (!isNaN(headerObject.spacings[i2])) {
-              headerObject.vectors[i2].multiplyScalar(headerObject.spacings[i2]);
-            }
-          }
-        }
-      }
-    }
-    function parseDataAsText(data2, start, end) {
-      let number = "";
-      start = start || 0;
-      end = end || data2.length;
-      let value;
-      const lengthOfTheResult = headerObject.sizes.reduce(function(previous, current) {
-        return previous * current;
-      }, 1);
-      let base = 10;
-      if (headerObject.encoding === "hex") {
-        base = 16;
-      }
-      const result = new headerObject.__array(lengthOfTheResult);
-      let resultIndex = 0;
-      let parsingFunction = parseInt;
-      if (headerObject.__array === Float32Array || headerObject.__array === Float64Array) {
-        parsingFunction = parseFloat;
-      }
-      for (let i2 = start; i2 < end; i2++) {
-        value = data2[i2];
-        if ((value < 9 || value > 13) && value !== 32) {
-          number += String.fromCharCode(value);
-        } else {
-          if (number !== "") {
-            result[resultIndex] = parsingFunction(number, base);
-            resultIndex++;
-          }
-          number = "";
-        }
-      }
-      if (number !== "") {
-        result[resultIndex] = parsingFunction(number, base);
-        resultIndex++;
-      }
-      return result;
-    }
-    const _bytes = scan("uchar", data.byteLength);
-    const _length = _bytes.length;
-    let _header = null;
-    let _data_start = 0;
-    let i;
-    for (i = 1; i < _length; i++) {
-      if (_bytes[i - 1] == 10 && _bytes[i] == 10) {
-        _header = this.parseChars(_bytes, 0, i - 2);
-        _data_start = i + 1;
-        break;
-      }
-    }
-    parseHeader(_header);
-    _data = _bytes.subarray(_data_start);
-    if (headerObject.encoding.substring(0, 2) === "gz") {
-      _data = gunzipSync(new Uint8Array(_data));
-    } else if (headerObject.encoding === "ascii" || headerObject.encoding === "text" || headerObject.encoding === "txt" || headerObject.encoding === "hex") {
-      _data = parseDataAsText(_data);
-    } else if (headerObject.encoding === "raw") {
-      const _copy = new Uint8Array(_data.length);
-      for (let i2 = 0; i2 < _data.length; i2++) {
-        _copy[i2] = _data[i2];
-      }
-      _data = _copy;
-    }
-    _data = _data.buffer;
-    const volume = new Volume();
-    volume.header = headerObject;
-    volume.data = new headerObject.__array(_data);
-    const min_max = volume.computeMinMax();
-    const min = min_max[0];
-    const max = min_max[1];
-    volume.windowLow = min;
-    volume.windowHigh = max;
-    volume.dimensions = [headerObject.sizes[0], headerObject.sizes[1], headerObject.sizes[2]];
-    volume.xLength = volume.dimensions[0];
-    volume.yLength = volume.dimensions[1];
-    volume.zLength = volume.dimensions[2];
-    const spacingX = new Vector3(
-      headerObject.vectors[0][0],
-      headerObject.vectors[0][1],
-      headerObject.vectors[0][2]
-    ).length();
-    const spacingY = new Vector3(
-      headerObject.vectors[1][0],
-      headerObject.vectors[1][1],
-      headerObject.vectors[1][2]
-    ).length();
-    const spacingZ = new Vector3(
-      headerObject.vectors[2][0],
-      headerObject.vectors[2][1],
-      headerObject.vectors[2][2]
-    ).length();
-    volume.spacing = [spacingX, spacingY, spacingZ];
-    volume.matrix = new Matrix4();
-    let _spaceX = 1;
-    let _spaceY = 1;
-    const _spaceZ = 1;
-    if (headerObject.space == "left-posterior-superior") {
-      _spaceX = -1;
-      _spaceY = -1;
-    } else if (headerObject.space === "left-anterior-superior") {
-      _spaceX = -1;
-    }
-    if (!headerObject.vectors) {
-      volume.matrix.set(_spaceX, 0, 0, 0, 0, _spaceY, 0, 0, 0, 0, _spaceZ, 0, 0, 0, 0, 1);
-    } else {
-      const v = headerObject.vectors;
-      volume.matrix.set(
-        _spaceX * v[0][0],
-        _spaceX * v[1][0],
-        _spaceX * v[2][0],
-        0,
-        _spaceY * v[0][1],
-        _spaceY * v[1][1],
-        _spaceY * v[2][1],
-        0,
-        _spaceZ * v[0][2],
-        _spaceZ * v[1][2],
-        _spaceZ * v[2][2],
-        0,
-        0,
-        0,
-        0,
-        1
-      );
-    }
-    volume.inverseMatrix = new Matrix4();
-    volume.inverseMatrix.copy(volume.matrix).invert();
-    volume.RASDimensions = new Vector3(volume.xLength, volume.yLength, volume.zLength).applyMatrix4(volume.matrix).round().toArray().map(Math.abs);
-    if (volume.lowerThreshold === -Infinity) {
-      volume.lowerThreshold = min;
-    }
-    if (volume.upperThreshold === Infinity) {
-      volume.upperThreshold = max;
-    }
-    return volume;
-  }
-  parseChars(array, start, end) {
-    if (start === void 0) {
-      start = 0;
-    }
-    if (end === void 0) {
-      end = array.length;
-    }
-    let output = "";
-    let i = 0;
-    for (i = start; i < end; ++i) {
-      output += String.fromCharCode(array[i]);
-    }
-    return output;
-  }
-}
-const _fieldFunctions = {
-  type: function(data) {
-    switch (data) {
-      case "uchar":
-      case "unsigned char":
-      case "uint8":
-      case "uint8_t":
-        this.__array = Uint8Array;
-        break;
-      case "signed char":
-      case "int8":
-      case "int8_t":
-        this.__array = Int8Array;
-        break;
-      case "short":
-      case "short int":
-      case "signed short":
-      case "signed short int":
-      case "int16":
-      case "int16_t":
-        this.__array = Int16Array;
-        break;
-      case "ushort":
-      case "unsigned short":
-      case "unsigned short int":
-      case "uint16":
-      case "uint16_t":
-        this.__array = Uint16Array;
-        break;
-      case "int":
-      case "signed int":
-      case "int32":
-      case "int32_t":
-        this.__array = Int32Array;
-        break;
-      case "uint":
-      case "unsigned int":
-      case "uint32":
-      case "uint32_t":
-        this.__array = Uint32Array;
-        break;
-      case "float":
-        this.__array = Float32Array;
-        break;
-      case "double":
-        this.__array = Float64Array;
-        break;
-      default:
-        throw new Error("Unsupported NRRD data type: " + data);
-    }
-    return this.type = data;
-  },
-  endian: function(data) {
-    return this.endian = data;
-  },
-  encoding: function(data) {
-    return this.encoding = data;
-  },
-  dimension: function(data) {
-    return this.dim = parseInt(data, 10);
-  },
-  sizes: function(data) {
-    let i;
-    return this.sizes = function() {
-      const _ref = data.split(/\s+/);
-      const _results = [];
-      for (let _i = 0, _len = _ref.length; _i < _len; _i++) {
-        i = _ref[_i];
-        _results.push(parseInt(i, 10));
-      }
-      return _results;
-    }();
-  },
-  space: function(data) {
-    return this.space = data;
-  },
-  "space origin": function(data) {
-    return this.space_origin = data.split("(")[1].split(")")[0].split(",");
-  },
-  "space directions": function(data) {
-    let f, v;
-    const parts = data.match(/\(.*?\)/g);
-    return this.vectors = function() {
-      const _results = [];
-      for (let _i = 0, _len = parts.length; _i < _len; _i++) {
-        v = parts[_i];
-        _results.push(
-          function() {
-            const _ref = v.slice(1, -1).split(/,/);
-            const _results2 = [];
-            for (let _j = 0, _len2 = _ref.length; _j < _len2; _j++) {
-              f = _ref[_j];
-              _results2.push(parseFloat(f));
-            }
-            return _results2;
-          }()
-        );
-      }
-      return _results;
-    }();
-  },
-  spacings: function(data) {
-    let f;
-    const parts = data.split(/\s+/);
-    return this.spacings = function() {
-      const _results = [];
-      for (let _i = 0, _len = parts.length; _i < _len; _i++) {
-        f = parts[_i];
-        _results.push(parseFloat(f));
-      }
-      return _results;
-    }();
-  }
-};
-export {
-  NRRDLoader
-};