rubyneat 0.3.5.alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (261) hide show
  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
  22. data/.yardoc/objects/root.dat +0 -0
  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
  55. data/doc/NEAT/Graph.html +402 -0
  56. data/doc/NEAT/NeatException.html +123 -0
  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
  80. data/foo/icon.png +0 -0
  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
  101. data/public/background.png +0 -0
  102. data/public/background.xcf +0 -0
  103. data/public/cart.png +0 -0
  104. data/public/cart.xcf +0 -0
  105. data/public/metalpoles_molton_ball_l.jpg +0 -0
  106. data/public/old_background.png +0 -0
  107. data/public/pointer.png +0 -0
  108. data/public/pointer.xcf +0 -0
  109. data/public/pole.kra +0 -0
  110. data/public/pole.png +0 -0
  111. data/public/pole.xcf +0 -0
  112. data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
  113. data/public/wheel.png +0 -0
  114. data/public/wheel.xcf +0 -0
  115. data/public/wood-planks-texture.jpg +0 -0
  116. data/rdoc/ControllerPoint.html +116 -0
  117. data/rdoc/CuteA.html +177 -0
  118. data/rdoc/CuteB.html +178 -0
  119. data/rdoc/DSLSetup.html +177 -0
  120. data/rdoc/GameTestWindow.html +242 -0
  121. data/rdoc/GameWindow.html +292 -0
  122. data/rdoc/Gemfile.html +215 -0
  123. data/rdoc/Gemfile_lock.html +327 -0
  124. data/rdoc/GraphTest.html +210 -0
  125. data/rdoc/Guardfile.html +198 -0
  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
  145. data/rdoc/NEAT/Evaluator.html +256 -0
  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
  147. data/rdoc/NEAT/Evolver.html +891 -0
  148. data/rdoc/NEAT/Expressor.html +402 -0
  149. data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
  150. data/rdoc/NEAT/Graph/GraphException.html +105 -0
  151. data/rdoc/NEAT/Graph.html +263 -0
  152. data/rdoc/NEAT/NeatException.html +105 -0
  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
  155. data/rdoc/NEAT/Operator.html +109 -0
  156. data/rdoc/NEAT/Population.html +935 -0
  157. data/rdoc/NEAT/Trait.html +117 -0
  158. data/rdoc/NEAT.html +422 -0
  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
  167. data/rdoc/Vector.html +195 -0
  168. data/rdoc/created.rid +125 -0
  169. data/rdoc/doc/ControllerPoint_html.html +299 -0
  170. data/rdoc/doc/CuteA_html.html +438 -0
  171. data/rdoc/doc/CuteB_html.html +436 -0
  172. data/rdoc/doc/DSL_html.html +992 -0
  173. data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
  181. data/rdoc/doc/NEAT/Controller_html.html +2212 -0
  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
  183. data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
  184. data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
  185. data/rdoc/doc/NEAT/Critter_html.html +1037 -0
  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
  187. data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
  193. data/rdoc/doc/NEAT/Graph_html.html +527 -0
  194. data/rdoc/doc/NEAT/NeatException_html.html +299 -0
  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
  200. data/rdoc/doc/NEAT_html.html +736 -0
  201. data/rdoc/doc/_index_html.html +559 -0
  202. data/rdoc/doc/class_list_html.html +369 -0
  203. data/rdoc/doc/css/common_css.html +188 -0
  204. data/rdoc/doc/css/full_list_css.html +243 -0
  205. data/rdoc/doc/css/style_css.html +530 -0
  206. data/rdoc/doc/file_list_html.html +240 -0
  207. data/rdoc/doc/frames_html.html +217 -0
  208. data/rdoc/doc/index_html.html +559 -0
  209. data/rdoc/doc/js/app_js.html +423 -0
  210. data/rdoc/doc/js/full_list_js.html +372 -0
  211. data/rdoc/doc/js/jquery_js.html +1536 -0
  212. data/rdoc/doc/method_list_html.html +1375 -0
  213. data/rdoc/doc/top-level-namespace_html.html +317 -0
  214. data/rdoc/fonts/Lato-Light.ttf +0 -0
  215. data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
  216. data/rdoc/fonts/Lato-Regular.ttf +0 -0
  217. data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
  218. data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
  219. data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
  220. data/rdoc/fonts.css +167 -0
  221. data/rdoc/images/add.png +0 -0
  222. data/rdoc/images/arrow_up.png +0 -0
  223. data/rdoc/images/brick.png +0 -0
  224. data/rdoc/images/brick_link.png +0 -0
  225. data/rdoc/images/bug.png +0 -0
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  227. data/rdoc/images/bullet_toggle_minus.png +0 -0
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  229. data/rdoc/images/date.png +0 -0
  230. data/rdoc/images/delete.png +0 -0
  231. data/rdoc/images/find.png +0 -0
  232. data/rdoc/images/loadingAnimation.gif +0 -0
  233. data/rdoc/images/macFFBgHack.png +0 -0
  234. data/rdoc/images/package.png +0 -0
  235. data/rdoc/images/page_green.png +0 -0
  236. data/rdoc/images/page_white_text.png +0 -0
  237. data/rdoc/images/page_white_width.png +0 -0
  238. data/rdoc/images/plugin.png +0 -0
  239. data/rdoc/images/ruby.png +0 -0
  240. data/rdoc/images/tag_blue.png +0 -0
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  242. data/rdoc/images/transparent.png +0 -0
  243. data/rdoc/images/wrench.png +0 -0
  244. data/rdoc/images/wrench_orange.png +0 -0
  245. data/rdoc/images/zoom.png +0 -0
  246. data/rdoc/index.html +282 -0
  247. data/rdoc/js/darkfish.js +140 -0
  248. data/rdoc/js/jquery.js +18 -0
  249. data/rdoc/js/navigation.js +142 -0
  250. data/rdoc/js/search.js +109 -0
  251. data/rdoc/js/search_index.js +1 -0
  252. data/rdoc/js/searcher.js +228 -0
  253. data/rdoc/rdoc.css +580 -0
  254. data/rdoc/rubyneat_gemspec.html +387 -0
  255. data/rdoc/table_of_contents.html +2502 -0
  256. data/rdoc/xordebug_log.html +170598 -0
  257. data/rdoc/xorsin_log.html +22569 -0
  258. data/rubyneat.gemspec +347 -0
  259. data/rubyneat.gemspec.orig +375 -0
  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
@@ -0,0 +1,1095 @@
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>Neuron.html - rubyneat 0.3.4</title>
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+
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../";
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+ </script>
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+
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+ <script src="../../js/jquery.js"></script>
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+ <script src="../../js/navigation.js"></script>
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+ <script src="../../js/search_index.js"></script>
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+ <script src="../../js/search.js"></script>
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+ <script src="../../js/searcher.js"></script>
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+ <script src="../../js/darkfish.js"></script>
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+ <body id="top" role="document" class="file">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../index.html" rel="home">Home</a>
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+ </h2>
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+
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+ <div id="table-of-contents-navigation">
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+ <a href="../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ </div>
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+ <div id="project-metadata">
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+ <div id="fileindex-section" class="nav-section">
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+ <h3>Pages</h3>
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+
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+ <ul class="link-list">
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+
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+ <li><a href="../../Gemfile.html">Gemfile</a>
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+
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+ <li><a href="../../Gemfile_lock.html">Gemfile.lock</a>
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+ <li><a href="../../Guardfile.html">Guardfile</a>
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+ <li><a href="../../Rakefile.html">Rakefile</a>
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+ <li><a href="../../doc/ControllerPoint_html.html">ControllerPoint.html</a>
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+ <li><a href="../../doc/CuteA_html.html">CuteA.html</a>
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+ <li><a href="../../doc/CuteB_html.html">CuteB.html</a>
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+ <li><a href="../../doc/DSL_html.html">DSL.html</a>
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+ <li><a href="../../doc/NEAT_html.html">NEAT.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes_html.html">BasicNeuronTypes.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html">BiasNeuron.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html">CosineNeuron.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/InputNeuron_html.html">InputNeuron.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html">SigmoidNeuron.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/SineNeuron_html.html">SineNeuron.html</a>
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+ <li><a href="../../doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html">TanhNeuron.html</a>
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+ <li><a href="../../doc/NEAT/Controller_html.html">Controller.html</a>
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+ <li><a href="../../doc/NEAT/Controller/NeatSettings_html.html">NeatSettings.html</a>
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+ <li><a href="../../doc/NEAT/Critter_html.html">Critter.html</a>
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+ <li><a href="../../doc/NEAT/Critter/Genotype/Gene_html.html">Gene.html</a>
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+ <li><a href="../../doc/NEAT/Critter/Phenotype_html.html">Phenotype.html</a>
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+ <li><a href="../../doc/NEAT/DSL_html.html">DSL.html</a>
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+ <li><a href="../../doc/NEAT/Evaluator_html.html">Evaluator.html</a>
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+ <li><a href="../../doc/NEAT/Evolver_html.html">Evolver.html</a>
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+ <li><a href="../../doc/NEAT/Evolver/CritterOp_html.html">CritterOp.html</a>
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+ <li><a href="../../doc/NEAT/Expressor_html.html">Expressor.html</a>
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+ <li><a href="../../doc/NEAT/Graph_html.html">Graph.html</a>
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+ <li><a href="../../doc/NEAT/Graph/DependencyResolver_html.html">DependencyResolver.html</a>
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+ <li><a href="../../doc/NEAT/Graph/GraphException_html.html">GraphException.html</a>
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+ <li><a href="../../doc/NEAT/NeatException_html.html">NeatException.html</a>
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+ <li><a href="../../doc/NEAT/NeatOb_html.html">NeatOb.html</a>
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+ <li><a href="../../doc/NEAT/Neuron_html.html">Neuron.html</a>
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+ <li><a href="../../doc/NEAT/Operator_html.html">Operator.html</a>
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+ <li><a href="../../doc/NEAT/Population_html.html">Population.html</a>
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+ <li><a href="../../doc/NEAT/Trait_html.html">Trait.html</a>
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+ <li><a href="../../doc/class_list_html.html">class_list.html</a>
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+ <li><a href="../../doc/css/common_css.html">common.css</a>
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+ <li><a href="../../doc/css/full_list_css.html">full_list.css</a>
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+ <li><a href="../../doc/css/style_css.html">style.css</a>
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+ <li><a href="../../doc/file_list_html.html">file_list.html</a>
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+ <li><a href="../../doc/frames_html.html">frames.html</a>
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+ <li><a href="../../doc/index_html.html">index.html</a>
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+ <pre>Class: NEAT::Neuron
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+
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+ &amp;mdash; Documentation by YARD 0.8.7.3</pre>
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+
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+ <p>&lt;/title&gt;</p>
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+ &lt;a href=&quot;../_index.html&quot;&gt;Index (N)&lt;/a&gt; &amp;raquo;
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+ &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NEAT.html&quot; title=&quot;NEAT (module)&quot;&gt;NEAT&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+ <pre> &lt;div id=&quot;search&quot;&gt;
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;class_list_link&quot;
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+ href=&quot;../class_list.html&quot;&gt;
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+ Class List
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+
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+ href=&quot;../method_list.html&quot;&gt;
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+ Method List
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+ &lt;/a&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;file_list_link&quot;
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+ href=&quot;../file_list.html&quot;&gt;
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+ File List
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+ &lt;/a&gt;</pre>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre> &lt;div class=&quot;clear&quot;&gt;&lt;/div&gt;
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+ &lt;/div&gt;
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+
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+ &lt;iframe id=&quot;search_frame&quot;&gt;&lt;/iframe&gt;
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+
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+ &lt;div id=&quot;content&quot;&gt;&lt;h1&gt;Class: NEAT::Neuron</pre>
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+
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+ <p>&lt;/h1&gt;</p>
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+
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+ <p>&lt;dl class=“box”&gt;</p>
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+
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+ <pre>&lt;dt class=&quot;r1&quot;&gt;Inherits:&lt;/dt&gt;
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+ &lt;dd class=&quot;r1&quot;&gt;
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+ &lt;span class=&quot;inheritName&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+
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+ &lt;ul class=&quot;fullTree&quot;&gt;
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+ &lt;li&gt;Object&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;NEAT::Neuron&lt;/li&gt;
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+
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+ &lt;/ul&gt;
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+ &lt;a href=&quot;#&quot; class=&quot;inheritanceTree&quot;&gt;show all&lt;/a&gt;
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+
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+ &lt;/dd&gt;
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+
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+ &lt;dt class=&quot;r2&quot;&gt;Includes:&lt;/dt&gt;
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+ &lt;dd class=&quot;r2&quot;&gt;Math, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Graph.html&quot; title=&quot;NEAT::Graph (module)&quot;&gt;Graph&lt;/a&gt;&lt;/span&gt;&lt;/dd&gt;
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+
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+ &lt;dt class=&quot;r1 last&quot;&gt;Defined in:&lt;/dt&gt;
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+ &lt;dd class=&quot;r1 last&quot;&gt;lib/rubyneat/neuron.rb&lt;/dd&gt;</pre>
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+
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+ <p>&lt;/dl&gt; &lt;div class=“clear”&gt;&lt;/div&gt;</p>
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+
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+ <p>&lt;h2&gt;Overview&lt;/h2&gt;&lt;div class=“docstring”&gt;</p>
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+
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+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
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+
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+ <p>&lt;h1 id=“label-Neuron+–+Basis+of+all+Neat+Neuron+types.”&gt;Neuron –
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+ Basis of all Neat Neuron types.&lt;/h1&gt;</p>
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+
288
+ <p>&lt;p&gt;Normally contains primatives which aids in its own expression, but
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+ the details of this remains to be worked out.&lt;/p&gt;</p>
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+
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+ <pre>&lt;/div&gt;</pre>
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+
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+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
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+ <p>&lt;/div&gt;&lt;div id=“subclasses”&gt;</p>
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+
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+ <pre>&lt;h2&gt;Direct Known Subclasses&lt;/h2&gt;
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+ &lt;p class=&quot;children&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;BasicNeuronTypes/CosineNeuron.html&quot; title=&quot;NEAT::BasicNeuronTypes::CosineNeuron (class)&quot;&gt;BasicNeuronTypes::CosineNeuron&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;BasicNeuronTypes/InputNeuron.html&quot; title=&quot;NEAT::BasicNeuronTypes::InputNeuron (class)&quot;&gt;BasicNeuronTypes::InputNeuron&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;BasicNeuronTypes/SigmoidNeuron.html&quot; title=&quot;NEAT::BasicNeuronTypes::SigmoidNeuron (class)&quot;&gt;BasicNeuronTypes::SigmoidNeuron&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;BasicNeuronTypes/SineNeuron.html&quot; title=&quot;NEAT::BasicNeuronTypes::SineNeuron (class)&quot;&gt;BasicNeuronTypes::SineNeuron&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;BasicNeuronTypes/TanhNeuron.html&quot; title=&quot;NEAT::BasicNeuronTypes::TanhNeuron (class)&quot;&gt;BasicNeuronTypes::TanhNeuron&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</pre>
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+
300
+ <p>&lt;/div&gt;</p>
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+
302
+ <pre>&lt;h2&gt;Constant Summary&lt;/h2&gt;
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+
304
+ &lt;dl class=&quot;constants&quot;&gt;
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+
306
+ &lt;dt id=&quot;neuron_types-classvariable&quot; class=&quot;&quot;&gt;@@neuron_types =
307
+ &lt;div class=&quot;docstring&quot;&gt;
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+ &lt;div class=&quot;discussion&quot;&gt;</pre>
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+
310
+ <p>&lt;p&gt;List of neuron types defined.&lt;/p&gt;</p>
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+
312
+ <pre>&lt;/div&gt;</pre>
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+
314
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
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+ <p>&lt;/div&gt;</p>
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+
318
+ <pre> &lt;/dt&gt;
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+ &lt;dd&gt;&lt;pre class=&quot;code&quot;&gt;&lt;span class=&#39;lbracket&#39;&gt;[&lt;/span&gt;&lt;span class=&#39;rbracket&#39;&gt;]&lt;/span&gt;&lt;/pre&gt;&lt;/dd&gt;
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+
321
+ &lt;/dl&gt;
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+
323
+ &lt;h2&gt;Instance Attribute Summary &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;&lt;/h2&gt;
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+ &lt;ul class=&quot;summary&quot;&gt;
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+
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+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#genotype-instance_method&quot; title=&quot;#genotype (instance method)&quot;&gt;- (Object) &lt;strong&gt;genotype&lt;/strong&gt; &lt;/a&gt;
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+
331
+ &lt;/span&gt;
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+
333
+ &lt;span class=&quot;note title readonly&quot;&gt;readonly&lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
337
+ <p>&lt;p&gt;Genotype to which we belong.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#heirarchy_number-instance_method&quot; title=&quot;#heirarchy_number (instance method)&quot;&gt;- (Object) &lt;strong&gt;heirarchy_number&lt;/strong&gt; &lt;/a&gt;
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+
346
+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
350
+ <p>&lt;p&gt;(assigned by wire!) Heirarchy number in the Genome / Critter We
351
+ need this to assure we add genes in the proper order.&lt;/p&gt;
352
+ &lt;/div&gt;&lt;/span&gt;</p>
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+
354
+ <p>&lt;/li&gt;</p>
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+
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+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#output-instance_method&quot; title=&quot;#output (instance method)&quot;&gt;- (Object) &lt;strong&gt;output&lt;/strong&gt; &lt;/a&gt;
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+
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+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
365
+ <p>&lt;p&gt;This is true if this is an output neuron.&lt;/p&gt;
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+ &lt;/div&gt;&lt;/span&gt;</p>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#trait-instance_method&quot; title=&quot;#trait (instance method)&quot;&gt;- (Object) &lt;strong&gt;trait&lt;/strong&gt; &lt;/a&gt;
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+
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+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
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+ <p>&lt;p&gt;Returns the value of attribute trait.&lt;/p&gt;
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+ &lt;/div&gt;&lt;/span&gt;</p>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre class="ruby"><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/ul&gt;
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+
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+ &lt;h3 class=&quot;inherited&quot;&gt;Attributes inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;&lt;/</span><span class="ruby-identifier">h3</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">p</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;inherited&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;object_link&#39;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;NeatOb.html#controller-instance_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-node">&quot;NEAT::NeatOb#controller (method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-comment">#controller&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#name-instance_method&quot; title=&quot;NEAT::NeatOb#name (method)&quot;&gt;#name&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">h2</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-constant">Class</span> <span class="ruby-constant">Method</span> <span class="ruby-constant">Summary</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">small</span><span class="ruby-operator">&gt;</span>(<span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;#&quot;</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_toggle&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-identifier">collapse</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/a&gt;)&lt;/sm</span><span class="ruby-identifier">all</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-node">/h2&gt;
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+
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+ &lt;ul class=&quot;summary&quot;&gt;
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+
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+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#bias%3F-class_method&quot; title=&quot;bias? (class method)&quot;&gt;+ (Boolean) &lt;strong&gt;bias?&lt;/s</span><span class="ruby-identifier">trong</span><span class="ruby-operator">&gt;</span> <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/a&gt;
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+
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+ &lt;/s</span><span class="ruby-identifier">pan</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_desc&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">div</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;inline&#39;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/div&gt;&lt;/s</span><span class="ruby-identifier">pan</span><span class="ruby-operator">&gt;</span>
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+ </pre>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre class="ruby"> <span class="ruby-operator">&lt;</span><span class="ruby-identifier">li</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;public &quot;</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_signature&quot;</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;#inherited-class_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-string">&quot;inherited (class method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">+</span> (<span class="ruby-constant">Object</span>) <span class="ruby-operator">&lt;</span><span class="ruby-identifier">strong</span><span class="ruby-operator">&gt;</span><span class="ruby-identifier">inherited</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/strong&gt;(clazz) &lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/</span><span class="ruby-identifier">div</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;
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+ </span></pre>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre class="ruby"> <span class="ruby-operator">&lt;</span><span class="ruby-identifier">li</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;public &quot;</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_signature&quot;</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;#input%3F-class_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-string">&quot;input? (class method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">+</span> (<span class="ruby-constant">Boolean</span>) <span class="ruby-operator">&lt;</span><span class="ruby-identifier">strong</span><span class="ruby-operator">&gt;</span><span class="ruby-identifier">input?</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/strong&gt; &lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;
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+
427
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;
428
+ </span></pre>
429
+
430
+ <p>&lt;p&gt;Class is is of Input type?.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
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+
432
+ <p>&lt;/li&gt;</p>
433
+
434
+ <pre class="ruby"> <span class="ruby-operator">&lt;</span><span class="ruby-identifier">li</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;public &quot;</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_signature&quot;</span><span class="ruby-operator">&gt;</span>
436
+
437
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;#neuron_types-class_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-string">&quot;neuron_types (class method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">+</span> (<span class="ruby-constant">Object</span>) <span class="ruby-operator">&lt;</span><span class="ruby-identifier">strong</span><span class="ruby-operator">&gt;</span><span class="ruby-identifier">neuron_types</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/strong&gt; &lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span>
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+
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+ <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;
442
+ </span></pre>
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+
444
+ <p>&lt;p&gt;List of distinct neuron types (classes).&lt;/p&gt;
445
+ &lt;/div&gt;&lt;/span&gt;</p>
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+
447
+ <p>&lt;/li&gt;</p>
448
+
449
+ <pre> &lt;/ul&gt;
450
+
451
+ &lt;h2&gt;
452
+ Instance Method Summary
453
+ &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;
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+ &lt;/h2&gt;
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+
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+ &lt;ul class=&quot;summary&quot;&gt;
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+
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+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
460
+
461
+ &lt;a href=&quot;#bias%3F-instance_method&quot; title=&quot;#bias? (instance method)&quot;&gt;- (Boolean) &lt;strong&gt;bias?&lt;/strong&gt; &lt;/a&gt;
462
+
463
+ &lt;/span&gt;
464
+
465
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/div&gt;&lt;/span&gt;</pre>
466
+
467
+ <p>&lt;/li&gt;</p>
468
+
469
+ <pre> &lt;li class=&quot;public &quot;&gt;
470
+ &lt;span class=&quot;summary_signature&quot;&gt;
471
+
472
+ &lt;a href=&quot;#express-instance_method&quot; title=&quot;#express (instance method)&quot;&gt;- (Object) &lt;strong&gt;express&lt;/strong&gt;(instance) &lt;/a&gt;
473
+
474
+ &lt;/span&gt;
475
+
476
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
477
+
478
+ <p>&lt;p&gt;Function must be implemented by subclasses for phenotype
479
+ generation.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
480
+
481
+ <p>&lt;/li&gt;</p>
482
+
483
+ <pre> &lt;li class=&quot;public &quot;&gt;
484
+ &lt;span class=&quot;summary_signature&quot;&gt;
485
+
486
+ &lt;a href=&quot;#input%3F-instance_method&quot; title=&quot;#input? (instance method)&quot;&gt;- (Boolean) &lt;strong&gt;input?&lt;/strong&gt; &lt;/a&gt;
487
+
488
+ &lt;/span&gt;
489
+
490
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/div&gt;&lt;/span&gt;</pre>
491
+
492
+ <p>&lt;/li&gt;</p>
493
+
494
+ <pre> &lt;li class=&quot;public &quot;&gt;
495
+ &lt;span class=&quot;summary_signature&quot;&gt;
496
+
497
+ &lt;a href=&quot;#output%3F-instance_method&quot; title=&quot;#output? (instance method)&quot;&gt;- (Boolean) &lt;strong&gt;output?&lt;/strong&gt; &lt;/a&gt;
498
+
499
+ &lt;/span&gt;
500
+
501
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
502
+
503
+ <p>&lt;p&gt;Instantiation is of outout type?.&lt;/p&gt;
504
+ &lt;/div&gt;&lt;/span&gt;</p>
505
+
506
+ <p>&lt;/li&gt;</p>
507
+
508
+ <pre class="ruby"> <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/ul&gt;
509
+
510
+ &lt;h3 class=&quot;inherited&quot;&gt;Methods included from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Graph.html&quot; title=&quot;NEAT::Graph (module)&quot;&gt;Graph&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;&lt;/</span><span class="ruby-identifier">h3</span><span class="ruby-operator">&gt;</span>
511
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">p</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;inherited&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;object_link&#39;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;Graph.html#%3C%3C-instance_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-node">&quot;NEAT::Graph#&amp;lt;&amp;lt; (method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-comment">#&lt;&lt;&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Graph.html#add-instance_method&quot; title=&quot;NEAT::Graph#add (method)&quot;&gt;#add&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Graph.html#clear_graph-instance_method&quot; title=&quot;NEAT::Graph#clear_graph (method)&quot;&gt;#clear_graph&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Graph.html#inputs-instance_method&quot; title=&quot;NEAT::Graph#inputs (method)&quot;&gt;#inputs&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</span>
512
+
513
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">h3</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;inherited&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-constant">Methods</span> <span class="ruby-identifier">inherited</span> <span class="ruby-identifier">from</span> <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;object_link&#39;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-string">&quot;NeatOb.html&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-string">&quot;NEAT::NeatOb (class)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-constant">NeatOb</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/a&gt;&lt;/s</span><span class="ruby-identifier">pan</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-node">/h3&gt;
514
+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#initialize-instance_method&quot; title=&quot;NEAT::NeatOb#initialize (method)&quot;&gt;#initialize&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-node">/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#log-instance_method&quot; title=&quot;NEAT::NeatOb#log (method)&quot;&gt;#log&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-node">/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#log-class_method&quot; title=&quot;NEAT::NeatOb.log (method)&quot;&gt;log&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-node">/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#to_s-instance_method&quot; title=&quot;NEAT::NeatOb#to_s (method)&quot;&gt;#to_s&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;&lt;/</span><span class="ruby-identifier">p</span><span class="ruby-operator">&gt;</span>
515
+
516
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">div</span> <span class="ruby-identifier">id</span>=<span class="ruby-string">&quot;constructor_details&quot;</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;method_details_list&quot;</span><span class="ruby-operator">&gt;</span>
517
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">h2</span><span class="ruby-operator">&gt;</span><span class="ruby-constant">Constructor</span> <span class="ruby-constant">Details</span><span class="ruby-operator">&lt;</span><span class="ruby-node">/h2&gt;
518
+
519
+ &lt;p class=&quot;notice&quot;&gt;This class inherits a constructor from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#initialize-instance_method&quot; title=&quot;NEAT::NeatOb#initialize (method)&quot;&gt;NEAT::NeatOb&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;&lt;/</span><span class="ruby-identifier">p</span><span class="ruby-operator">&gt;</span>
520
+ </pre>
521
+
522
+ <p>&lt;/div&gt;</p>
523
+
524
+ <pre>&lt;div id=&quot;instance_attr_details&quot; class=&quot;attr_details&quot;&gt;
525
+ &lt;h2&gt;Instance Attribute Details&lt;/h2&gt;
526
+
527
+ &lt;span id=&quot;&quot;&gt;&lt;/span&gt;
528
+ &lt;div class=&quot;method_details first&quot;&gt;
529
+ &lt;h3 class=&quot;signature first&quot; id=&quot;genotype-instance_method&quot;&gt;
530
+
531
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;genotype&lt;/strong&gt; &lt;span class=&quot;extras&quot;&gt;(readonly)&lt;/span&gt;</pre>
532
+
533
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
534
+
535
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
536
+
537
+ <p>&lt;p&gt;Genotype to which we belong&lt;/p&gt;</p>
538
+
539
+ <pre>&lt;/div&gt;</pre>
540
+
541
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
542
+
543
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
544
+
545
+ <pre>&lt;tr&gt;
546
+ &lt;td&gt;
547
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
548
+
549
+ <p>19 20 21&lt;/pre&gt;</p>
550
+
551
+ <pre>&lt;/td&gt;
552
+ &lt;td&gt;
553
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 19&lt;/span&gt;</pre>
554
+
555
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
556
+ identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;</p>
557
+
558
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@genotype&lt;/span&gt;</pre>
559
+
560
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
561
+
562
+ <pre> &lt;/td&gt;
563
+ &lt;/tr&gt;</pre>
564
+
565
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
566
+
567
+ <pre> &lt;span id=&quot;heirarchy_number=-instance_method&quot;&gt;&lt;/span&gt;
568
+ &lt;div class=&quot;method_details &quot;&gt;
569
+ &lt;h3 class=&quot;signature &quot; id=&quot;heirarchy_number-instance_method&quot;&gt;
570
+
571
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;heirarchy_number&lt;/strong&gt;</pre>
572
+
573
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
574
+
575
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
576
+
577
+ <p>&lt;p&gt;(assigned by wire!) Heirarchy number in the Genome / Critter We
578
+ need this to assure we add genes in the proper order. This will be
579
+ recalculated every time a new neuron is added.&lt;/p&gt;</p>
580
+
581
+ <pre>&lt;/div&gt;</pre>
582
+
583
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
584
+
585
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
586
+
587
+ <pre>&lt;tr&gt;
588
+ &lt;td&gt;
589
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
590
+
591
+ <p>25 26 27&lt;/pre&gt;</p>
592
+
593
+ <pre>&lt;/td&gt;
594
+ &lt;td&gt;
595
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 25&lt;/span&gt;</pre>
596
+
597
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
598
+ identifier rubyid_heirarchy_number&#39;&gt;heirarchy_number&lt;/span&gt;</p>
599
+
600
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@heirarchy_number&lt;/span&gt;</pre>
601
+
602
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
603
+
604
+ <pre> &lt;/td&gt;
605
+ &lt;/tr&gt;</pre>
606
+
607
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
608
+
609
+ <pre> &lt;span id=&quot;output=-instance_method&quot;&gt;&lt;/span&gt;
610
+ &lt;div class=&quot;method_details &quot;&gt;
611
+ &lt;h3 class=&quot;signature &quot; id=&quot;output-instance_method&quot;&gt;
612
+
613
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;output&lt;/strong&gt;</pre>
614
+
615
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
616
+
617
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
618
+
619
+ <p>&lt;p&gt;This is true if this is an output neuron.&lt;/p&gt;</p>
620
+
621
+ <pre>&lt;/div&gt;</pre>
622
+
623
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
624
+
625
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
626
+
627
+ <pre>&lt;tr&gt;
628
+ &lt;td&gt;
629
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
630
+
631
+ <p>28 29 30&lt;/pre&gt;</p>
632
+
633
+ <pre>&lt;/td&gt;
634
+ &lt;td&gt;
635
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 28&lt;/span&gt;</pre>
636
+
637
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
638
+ identifier rubyid_output&#39;&gt;output&lt;/span&gt;</p>
639
+
640
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@output&lt;/span&gt;</pre>
641
+
642
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
643
+
644
+ <pre> &lt;/td&gt;
645
+ &lt;/tr&gt;</pre>
646
+
647
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
648
+
649
+ <pre> &lt;span id=&quot;trait=-instance_method&quot;&gt;&lt;/span&gt;
650
+ &lt;div class=&quot;method_details &quot;&gt;
651
+ &lt;h3 class=&quot;signature &quot; id=&quot;trait-instance_method&quot;&gt;
652
+
653
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;trait&lt;/strong&gt;</pre>
654
+
655
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
656
+
657
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
658
+
659
+ <p>&lt;p&gt;Returns the value of attribute trait&lt;/p&gt;</p>
660
+
661
+ <pre>&lt;/div&gt;</pre>
662
+
663
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
664
+
665
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
666
+
667
+ <pre>&lt;tr&gt;
668
+ &lt;td&gt;
669
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
670
+
671
+ <p>20 21 22&lt;/pre&gt;</p>
672
+
673
+ <pre>&lt;/td&gt;
674
+ &lt;td&gt;
675
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 20&lt;/span&gt;</pre>
676
+
677
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
678
+ identifier rubyid_trait&#39;&gt;trait&lt;/span&gt;</p>
679
+
680
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@trait&lt;/span&gt;</pre>
681
+
682
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
683
+
684
+ <pre> &lt;/td&gt;
685
+ &lt;/tr&gt;</pre>
686
+
687
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
688
+
689
+ <pre>&lt;/div&gt;
690
+
691
+ &lt;div id=&quot;class_method_details&quot; class=&quot;method_details_list&quot;&gt;
692
+ &lt;h2&gt;Class Method Details&lt;/h2&gt;
693
+
694
+ &lt;div class=&quot;method_details first&quot;&gt;
695
+ &lt;h3 class=&quot;signature first&quot; id=&quot;bias?-class_method&quot;&gt;
696
+
697
+ + (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;bias?&lt;/strong&gt;</pre>
698
+
699
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
700
+
701
+ <pre>&lt;div class=&quot;discussion&quot;&gt;
702
+
703
+ &lt;/div&gt;</pre>
704
+
705
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
706
+
707
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
708
+
709
+ <pre>&lt;li&gt;
710
+
711
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
712
+
713
+ &lt;/li&gt;</pre>
714
+
715
+ <p>&lt;/ul&gt;</p>
716
+
717
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
718
+
719
+ <pre>&lt;tr&gt;
720
+ &lt;td&gt;
721
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
722
+
723
+ <p>37&lt;/pre&gt;</p>
724
+
725
+ <pre>&lt;/td&gt;
726
+ &lt;td&gt;
727
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 37&lt;/span&gt;</pre>
728
+
729
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span
730
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
731
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
732
+ rubyid_bias?&#39;&gt;bias?&lt;/span&gt; &lt;span
733
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
734
+ class=&#39;kw&#39;&gt;false&lt;/span&gt; &lt;span
735
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
736
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
737
+
738
+ <pre> &lt;/td&gt;
739
+ &lt;/tr&gt;</pre>
740
+
741
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
742
+
743
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
744
+ &lt;h3 class=&quot;signature &quot; id=&quot;inherited-class_method&quot;&gt;
745
+
746
+ + (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;inherited&lt;/strong&gt;(clazz)</pre>
747
+
748
+ <p>&lt;/h3&gt;&lt;table class=“source_code”&gt;</p>
749
+
750
+ <pre>&lt;tr&gt;
751
+ &lt;td&gt;
752
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
753
+
754
+ <p>43 44 45&lt;/pre&gt;</p>
755
+
756
+ <pre>&lt;/td&gt;
757
+ &lt;td&gt;
758
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 43&lt;/span&gt;</pre>
759
+
760
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span
761
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
762
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
763
+ rubyid_inherited&#39;&gt;inherited&lt;/span&gt;&lt;span
764
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
765
+ rubyid_clazz&#39;&gt;clazz&lt;/span&gt;&lt;span
766
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
767
+
768
+ <pre>&lt;span class=&#39;cvar&#39;&gt;@@neuron_types&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;&amp;lt;&amp;lt;&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_clazz&#39;&gt;clazz&lt;/span&gt;</pre>
769
+
770
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
771
+
772
+ <pre> &lt;/td&gt;
773
+ &lt;/tr&gt;</pre>
774
+
775
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
776
+
777
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
778
+ &lt;h3 class=&quot;signature &quot; id=&quot;input?-class_method&quot;&gt;
779
+
780
+ + (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;input?&lt;/strong&gt;</pre>
781
+
782
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
783
+
784
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
785
+
786
+ <p>&lt;p&gt;Class is is of Input type?&lt;/p&gt;</p>
787
+
788
+ <pre>&lt;/div&gt;</pre>
789
+
790
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
791
+
792
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
793
+
794
+ <pre>&lt;li&gt;
795
+
796
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
797
+
798
+ &lt;/li&gt;</pre>
799
+
800
+ <p>&lt;/ul&gt;</p>
801
+
802
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
803
+
804
+ <pre>&lt;tr&gt;
805
+ &lt;td&gt;
806
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
807
+
808
+ <p>34&lt;/pre&gt;</p>
809
+
810
+ <pre>&lt;/td&gt;
811
+ &lt;td&gt;
812
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 34&lt;/span&gt;</pre>
813
+
814
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span
815
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
816
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
817
+ rubyid_input?&#39;&gt;input?&lt;/span&gt; &lt;span
818
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
819
+ class=&#39;kw&#39;&gt;false&lt;/span&gt; &lt;span
820
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
821
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
822
+
823
+ <pre> &lt;/td&gt;
824
+ &lt;/tr&gt;</pre>
825
+
826
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
827
+
828
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
829
+ &lt;h3 class=&quot;signature &quot; id=&quot;neuron_types-class_method&quot;&gt;
830
+
831
+ + (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;neuron_types&lt;/strong&gt;</pre>
832
+
833
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
834
+
835
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
836
+
837
+ <p>&lt;p&gt;List of distinct neuron types (classes)&lt;/p&gt;</p>
838
+
839
+ <pre>&lt;/div&gt;</pre>
840
+
841
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
842
+
843
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
844
+
845
+ <pre>&lt;tr&gt;
846
+ &lt;td&gt;
847
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
848
+
849
+ <p>48&lt;/pre&gt;</p>
850
+
851
+ <pre>&lt;/td&gt;
852
+ &lt;td&gt;
853
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 48&lt;/span&gt;</pre>
854
+
855
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span
856
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
857
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
858
+ rubyid_neuron_types&#39;&gt;neuron_types&lt;/span&gt;&lt;span
859
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
860
+ class=&#39;cvar&#39;&gt;@@neuron_types&lt;/span&gt; &lt;span
861
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
862
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
863
+
864
+ <pre> &lt;/td&gt;
865
+ &lt;/tr&gt;</pre>
866
+
867
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
868
+
869
+ <pre>&lt;/div&gt;
870
+
871
+ &lt;div id=&quot;instance_method_details&quot; class=&quot;method_details_list&quot;&gt;
872
+ &lt;h2&gt;Instance Method Details&lt;/h2&gt;
873
+
874
+ &lt;div class=&quot;method_details first&quot;&gt;
875
+ &lt;h3 class=&quot;signature first&quot; id=&quot;bias?-instance_method&quot;&gt;
876
+
877
+ - (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;bias?&lt;/strong&gt;</pre>
878
+
879
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
880
+
881
+ <pre>&lt;div class=&quot;discussion&quot;&gt;
882
+
883
+ &lt;/div&gt;</pre>
884
+
885
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
886
+
887
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
888
+
889
+ <pre>&lt;li&gt;
890
+
891
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
892
+
893
+ &lt;/li&gt;</pre>
894
+
895
+ <p>&lt;/ul&gt;</p>
896
+
897
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
898
+
899
+ <pre>&lt;tr&gt;
900
+ &lt;td&gt;
901
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
902
+
903
+ <p>38&lt;/pre&gt;</p>
904
+
905
+ <pre>&lt;/td&gt;
906
+ &lt;td&gt;
907
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 38&lt;/span&gt;</pre>
908
+
909
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
910
+ identifier rubyid_bias?&#39;&gt;bias?&lt;/span&gt; &lt;span
911
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
912
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
913
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
914
+ rubyid_class&#39;&gt;class&lt;/span&gt;&lt;span
915
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
916
+ rubyid_bias?&#39;&gt;bias?&lt;/span&gt; &lt;span
917
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
918
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
919
+
920
+ <pre> &lt;/td&gt;
921
+ &lt;/tr&gt;</pre>
922
+
923
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
924
+
925
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
926
+ &lt;h3 class=&quot;signature &quot; id=&quot;express-instance_method&quot;&gt;
927
+
928
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;express&lt;/strong&gt;(instance)</pre>
929
+
930
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
931
+
932
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
933
+
934
+ <p>&lt;p&gt;Function must be implemented by subclasses for phenotype
935
+ generation. Basically, an instance is passed to this function and it will
936
+ add a function to sum all inputs and a apply an operator to the
937
+ sum.&lt;/p&gt;</p>
938
+
939
+ <pre>&lt;/div&gt;</pre>
940
+
941
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
942
+
943
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
944
+
945
+ <pre>&lt;tr&gt;
946
+ &lt;td&gt;
947
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
948
+
949
+ <p>54 55 56&lt;/pre&gt;</p>
950
+
951
+ <pre>&lt;/td&gt;
952
+ &lt;td&gt;
953
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 54&lt;/span&gt;</pre>
954
+
955
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
956
+ identifier rubyid_express&#39;&gt;express&lt;/span&gt;&lt;span
957
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
958
+ rubyid_instance&#39;&gt;instance&lt;/span&gt;&lt;span
959
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
960
+
961
+ <pre>&lt;span class=&#39;id identifier rubyid_raise&#39;&gt;raise&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;NeatException&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span class=&#39;tstring&#39;&gt;&lt;span class=&#39;tstring_beg&#39;&gt;&amp;quot;&lt;/span&gt;&lt;span class=&#39;tstring_content&#39;&gt;express() must be implemented by subclass.&lt;/span&gt;&lt;span class=&#39;tstring_end&#39;&gt;&amp;quot;&lt;/span&gt;&lt;/span&gt;</pre>
962
+
963
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
964
+
965
+ <pre> &lt;/td&gt;
966
+ &lt;/tr&gt;</pre>
967
+
968
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
969
+
970
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
971
+ &lt;h3 class=&quot;signature &quot; id=&quot;input?-instance_method&quot;&gt;
972
+
973
+ - (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;input?&lt;/strong&gt;</pre>
974
+
975
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
976
+
977
+ <pre>&lt;div class=&quot;discussion&quot;&gt;
978
+
979
+ &lt;/div&gt;</pre>
980
+
981
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
982
+
983
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
984
+
985
+ <pre>&lt;li&gt;
986
+
987
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
988
+
989
+ &lt;/li&gt;</pre>
990
+
991
+ <p>&lt;/ul&gt;</p>
992
+
993
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
994
+
995
+ <pre>&lt;tr&gt;
996
+ &lt;td&gt;
997
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
998
+
999
+ <p>35&lt;/pre&gt;</p>
1000
+
1001
+ <pre>&lt;/td&gt;
1002
+ &lt;td&gt;
1003
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 35&lt;/span&gt;</pre>
1004
+
1005
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1006
+ identifier rubyid_input?&#39;&gt;input?&lt;/span&gt; &lt;span
1007
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
1008
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
1009
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
1010
+ rubyid_class&#39;&gt;class&lt;/span&gt;&lt;span
1011
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
1012
+ rubyid_input?&#39;&gt;input?&lt;/span&gt; &lt;span
1013
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
1014
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1015
+
1016
+ <pre> &lt;/td&gt;
1017
+ &lt;/tr&gt;</pre>
1018
+
1019
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1020
+
1021
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
1022
+ &lt;h3 class=&quot;signature &quot; id=&quot;output?-instance_method&quot;&gt;
1023
+
1024
+ - (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;output?&lt;/strong&gt;</pre>
1025
+
1026
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1027
+
1028
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1029
+
1030
+ <p>&lt;p&gt;Instantiation is of outout type?&lt;/p&gt;</p>
1031
+
1032
+ <pre>&lt;/div&gt;</pre>
1033
+
1034
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1035
+
1036
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
1037
+
1038
+ <pre>&lt;li&gt;
1039
+
1040
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
1041
+
1042
+ &lt;/li&gt;</pre>
1043
+
1044
+ <p>&lt;/ul&gt;</p>
1045
+
1046
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1047
+
1048
+ <pre>&lt;tr&gt;
1049
+ &lt;td&gt;
1050
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1051
+
1052
+ <p>41&lt;/pre&gt;</p>
1053
+
1054
+ <pre>&lt;/td&gt;
1055
+ &lt;td&gt;
1056
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/neuron.rb&#39;, line 41&lt;/span&gt;</pre>
1057
+
1058
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1059
+ identifier rubyid_output?&#39;&gt;output?&lt;/span&gt; &lt;span
1060
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
1061
+ class=&#39;op&#39;&gt;!&lt;/span&gt;&lt;span
1062
+ class=&#39;op&#39;&gt;!&lt;/span&gt;&lt;span
1063
+ class=&#39;ivar&#39;&gt;@output&lt;/span&gt; &lt;span
1064
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
1065
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1066
+
1067
+ <pre> &lt;/td&gt;
1068
+ &lt;/tr&gt;</pre>
1069
+
1070
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1071
+
1072
+ <pre>&lt;/div&gt;</pre>
1073
+
1074
+ <p>&lt;/div&gt;</p>
1075
+
1076
+ <pre> &lt;div id=&quot;footer&quot;&gt;
1077
+ Generated on Sun Mar 16 16:36:51 2014 by
1078
+ &lt;a href=&quot;http://yardoc.org&quot; title=&quot;Yay! A Ruby Documentation Tool&quot; target=&quot;_parent&quot;&gt;yard&lt;/a&gt;
1079
+ 0.8.7.3 (ruby-2.1.1).</pre>
1080
+
1081
+ <p>&lt;/div&gt;</p>
1082
+
1083
+ <pre>&lt;/body&gt;</pre>
1084
+
1085
+ <p>&lt;/html&gt;</p>
1086
+ </main>
1087
+
1088
+
1089
+
1090
+ <footer id="validator-badges" role="contentinfo">
1091
+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
1092
+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
1093
+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
1094
+ </footer>
1095
+