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<h1 id="label-Add+a+neuron+to+given+critter+Here%2C+we+add+a+neuron+by+randomly+picking+a+gene%2C+and+split+it+into+two+genes+with+an+intervening+neuron.">Add a neuron to given critter Here, we add a neuron by randomly picking a gene, and split it into two genes with an intervening neuron.</h1>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 254</span>
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<span class='kw'>super</span> <span class='id identifier rubyid_evol'>evol</span><span class='period'>.</span><span class='id identifier rubyid_controller'>controller</span>
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<span class='ivar'>@evolver</span> <span class='op'>=</span> <span class='id identifier rubyid_evol'>evol</span>
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- (<tt>Object</tt>) <strong>add_gene!</strong>(crit)
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<h1 id="label-Add+a+gene+to+the+genome">Add a gene to the genome</h1>
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<p>Unlike adding a new neuron, adding a new gene could result in a circular
|
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dependency. If so, and if recurrency is switched off, we must detect this
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condition and switch off the offending neurons.</p>
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<p>Obviously, this might result in a loss of functionality, but oh well.</p>
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<p>An easy and obvious check is to make sure we don't accept any inputs
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from output neurons, and we don't do any outputs to input neurons.</p>
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<p>Constructs for handling recurrency are present in Expressor.</p>
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<span class='kw'>def</span> <span class='id identifier rubyid_add_gene!'>add_gene!</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
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<span class='id identifier rubyid_n1'>n1</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_neurons'>neurons</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span> <span class='comment'># input
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</span> <span class='id identifier rubyid_n2'>n2</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_neurons'>neurons</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span> <span class='comment'># output
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<span class='comment'># Sanity checks!
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</span> <span class='kw'>unless</span> <span class='id identifier rubyid_n1'>n1</span> <span class='op'>==</span> <span class='id identifier rubyid_n2'>n2</span> <span class='kw'>or</span> <span class='id identifier rubyid_n1'>n1</span><span class='period'>.</span><span class='id identifier rubyid_output?'>output?</span> <span class='kw'>or</span> <span class='id identifier rubyid_n2'>n2</span><span class='period'>.</span><span class='id identifier rubyid_input?'>input?</span>
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<span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_n1'>n1</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_n2'>n2</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_gaussian'>gaussian</span><span class='rbracket'>]</span>
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<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_genes'>add_genes</span> <span class='id identifier rubyid_gene'>gene</span>
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<span class='id identifier rubyid_log'>log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>add_gene! Added gene </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_gene'>gene</span><span class='embexpr_end'>}</span><span class='tstring_content'>(</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_n1'>n1</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='embexpr_end'>}</span><span class='tstring_content'> -> </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_n2'>n2</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='embexpr_end'>}</span><span class='tstring_content'>) to </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_crit'>crit</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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<span class='kw'>end</span>
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<span class='kw'>end</span></pre>
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<h3 class="signature " id="add_neuron!-instance_method">
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- (<tt>Object</tt>) <strong>add_neuron!</strong>(crit)
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<div class="discussion">
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<h1 id="label-Add+a+neuron+to+given+critter">Add a neuron to given critter</h1>
|
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<p>Here, we add a neuron by randomly picking a gene, and split it into two
|
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genes with an intervening neuron. The old gene is not replaced, but
|
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disabled. 2 new genes are created along with the new neuron.</p>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 265</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_add_neuron!'>add_neuron!</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
|
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440
|
+
<span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
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441
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+
<span class='id identifier rubyid_neu'>neu</span> <span class='op'>=</span> <span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_neural_hidden'>neural_hidden</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
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442
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<span class='id identifier rubyid_g1'>g1</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_in_neuron'>in_neuron</span><span class='comma'>,</span> <span class='id identifier rubyid_neu'>neu</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_weight'>weight</span><span class='rbracket'>]</span>
|
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443
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<span class='id identifier rubyid_g2'>g2</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_neu'>neu</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_out_neuron'>out_neuron</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_weight'>weight</span><span class='rbracket'>]</span>
|
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444
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+
<span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled'>enabled</span> <span class='op'>=</span> <span class='kw'>false</span>
|
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445
|
+
<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_neurons'>add_neurons</span> <span class='id identifier rubyid_neu'>neu</span>
|
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446
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+
<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_genes'>add_genes</span> <span class='id identifier rubyid_g1'>g1</span><span class='comma'>,</span> <span class='id identifier rubyid_g2'>g2</span>
|
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447
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<span class='id identifier rubyid_log'>log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>add_neuron!: neu </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_neu'>neu</span><span class='embexpr_end'>}</span><span class='tstring_content'>, g1 </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_g1'>g1</span><span class='embexpr_end'>}</span><span class='tstring_content'>, g2 </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_g2'>g2</span><span class='embexpr_end'>}</span><span class='tstring_end'>"</span></span>
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<span class='kw'>end</span></pre>
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</td>
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</table>
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<div class="method_details ">
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<h3 class="signature " id="disable_gene!-instance_method">
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456
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457
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- (<tt>Object</tt>) <strong>disable_gene!</strong>(crit)
|
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458
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+
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459
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</h3><div class="docstring">
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<div class="discussion">
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465
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<p>Pick an enabled gene at random and disable it.</p>
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+
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468
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469
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</div>
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</div>
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<div class="tags">
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</div><table class="source_code">
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<pre class="lines">
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306</pre>
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<td>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 303</span>
|
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<span class='kw'>def</span> <span class='id identifier rubyid_disable_gene!'>disable_gene!</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
|
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489
|
+
<span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_gene'>gene</span><span class='op'>|</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_disabled?'>disabled?</span> <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
|
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490
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<span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled'>enabled</span> <span class='op'>=</span> <span class='kw'>false</span> <span class='kw'>unless</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
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<span class='kw'>end</span></pre>
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</td>
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</tr>
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</table>
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</div>
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<div class="method_details ">
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<h3 class="signature " id="reenable_gene!-instance_method">
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|
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- (<tt>Object</tt>) <strong>reenable_gene!</strong>(crit)
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</h3><div class="docstring">
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<div class="discussion">
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508
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509
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<p>Pick a disabled gene at random and reenable it.</p>
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510
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512
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</div>
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</div>
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<div class="tags">
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</div><table class="source_code">
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<pre class="lines">
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312</pre>
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<td>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 309</span>
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531
|
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<span class='kw'>def</span> <span class='id identifier rubyid_reenable_gene!'>reenable_gene!</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
|
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532
|
+
<span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_gene'>gene</span><span class='op'>|</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled?'>enabled?</span> <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
|
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533
|
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<span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled'>enabled</span> <span class='op'>=</span> <span class='kw'>true</span> <span class='kw'>unless</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
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|
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<span class='kw'>end</span></pre>
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<div id="footer">
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Generated on Sun Apr 13 15:54:02 2014 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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0.8.7.4 (ruby-2.1.1).
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