rubyneat 0.3.5.alpha.2
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<h1 id="class-NEAT::Population-label-Population+of+NEAT+Critters."><a href="Population.html">Population</a> of <a href="../NEAT.html">NEAT</a> Critters.<span><a href="#class-NEAT::Population-label-Population+of+NEAT+Critters.">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>The Population
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In ourselves we have the pool of neurons the critters all use.
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the pool of neurons are indirects, of course, as during phenotype
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expression, all the phenotypes shall be created individually.</pre>
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<section id="5Buntitled-5D" class="documentation-section">
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<section class="attribute-method-details" class="method-section">
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<header>
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<h3>Attributes</h3>
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<p>list of critter in this population</p>
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<span class="method-name">fitness</span><span
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<p>Overall population fitness and novelty</p>
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<p>List of possible neuron classes for hidden neurons.</p>
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<span class="method-name">input_neurons</span><span
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</div>
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<p>Ordered list or hash of input neuron classes (all critters generated here
|
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shall have this)</p>
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</div>
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<span class="method-name">novelty</span><span
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<p>Overall population fitness and novelty</p>
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</div>
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</div>
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<span class="method-name">output_neurons</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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<p>Ordered list or hash of output neuron classes (all critters generated here
|
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shall have this)</p>
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</div>
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</div>
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<div id="attribute-i-species" class="method-detail">
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<span class="method-name">species</span><span
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class="attribute-access-type">[R]</span>
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</div>
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<div class="method-description">
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<p>Hash list of species lists</p>
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</div>
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</div>
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<div id="attribute-i-traits" class="method-detail">
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<span class="method-name">traits</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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<div class="method-description">
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</div>
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</div>
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</section>
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<section id="public-class-5Buntitled-5D-method-details" class="method-section">
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<header>
|
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<h3>Public Class Methods</h3>
|
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</header>
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<div id="method-c-new" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">new</span><span
|
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class="method-args">(c, &block)</span>
|
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|
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<span class="method-click-advice">click to toggle source</span>
|
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|
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</div>
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|
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<div class="method-description">
|
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|
|
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<p>Create initial (ramdom) population of critters</p>
|
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|
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|
|
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|
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|
|
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|
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<div class="method-calls-super">
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|
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Calls superclass method
|
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|
|
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|
+
</div>
|
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|
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|
|
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|
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|
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|
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|
|
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|
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<div class="method-source-code" id="new-source">
|
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 37</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">c</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
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|
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<span class="ruby-keyword">super</span>
|
|
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|
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<span class="ruby-ivar">@input_neurons</span> = <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">clone</span>
|
|
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|
+
<span class="ruby-ivar">@output_neurons</span> = <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">clone</span>
|
|
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|
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<span class="ruby-ivar">@hidden_neurons</span> = <span class="ruby-keyword">unless</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_hidden</span>.<span class="ruby-identifier">nil?</span>
|
|
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|
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<span class="ruby-identifier">c</span>.<span class="ruby-identifier">neural_hidden</span>
|
|
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|
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<span class="ruby-keyword">else</span>
|
|
295
|
+
<span class="ruby-identifier">c</span>.<span class="ruby-identifier">neuron_catalog</span>.<span class="ruby-identifier">keep_if</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span> <span class="ruby-keyword">not</span> <span class="ruby-identifier">n</span>.<span class="ruby-identifier">input?</span>}
|
|
296
|
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<span class="ruby-keyword">end</span>
|
|
297
|
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<span class="ruby-ivar">@critters</span> = (<span class="ruby-value">0</span> <span class="ruby-operator">...</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">start_population_size</span> <span class="ruby-operator">||</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">population_size</span>).<span class="ruby-identifier">map</span> <span class="ruby-keyword">do</span>
|
|
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|
+
<span class="ruby-constant">Critter</span>.<span class="ruby-identifier">new</span>(<span class="ruby-keyword">self</span>)
|
|
299
|
+
<span class="ruby-keyword">end</span>
|
|
300
|
+
<span class="ruby-identifier">block</span>.(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">block</span>.<span class="ruby-identifier">nil?</span>
|
|
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|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
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</div>
|
|
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|
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|
|
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|
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</div>
|
|
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|
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|
|
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|
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|
|
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|
+
|
|
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|
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|
|
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|
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</div>
|
|
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|
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|
|
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|
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|
|
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|
+
</section>
|
|
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|
+
|
|
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|
+
<section id="public-instance-5Buntitled-5D-method-details" class="method-section">
|
|
315
|
+
<header>
|
|
316
|
+
<h3>Public Instance Methods</h3>
|
|
317
|
+
</header>
|
|
318
|
+
|
|
319
|
+
|
|
320
|
+
<div id="method-i-analyze-21" class="method-detail ">
|
|
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|
+
|
|
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|
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<div class="method-heading">
|
|
323
|
+
<span class="method-name">analyze!</span><span
|
|
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|
+
class="method-args">()</span>
|
|
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|
+
|
|
326
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
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|
+
|
|
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|
+
</div>
|
|
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|
+
|
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|
+
|
|
331
|
+
<div class="method-description">
|
|
332
|
+
|
|
333
|
+
<p>Alalyze evaluation results.</p>
|
|
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|
+
|
|
335
|
+
|
|
336
|
+
|
|
337
|
+
|
|
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|
+
<div class="method-source-code" id="analyze-21-source">
|
|
339
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 74</span>
|
|
340
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">analyze!</span>
|
|
341
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evaluator</span>.<span class="ruby-identifier">analyze_for_fitness!</span> <span class="ruby-identifier">critter</span> }
|
|
342
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
+
</div>
|
|
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|
+
|
|
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|
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</div>
|
|
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|
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|
|
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|
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|
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|
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|
|
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|
+
|
|
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|
+
</div>
|
|
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|
+
|
|
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|
+
|
|
353
|
+
<div id="method-i-best_critter" class="method-detail ">
|
|
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|
+
|
|
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|
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<div class="method-heading">
|
|
356
|
+
<span class="method-name">best_critter</span><span
|
|
357
|
+
class="method-args">()</span>
|
|
358
|
+
|
|
359
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
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|
+
|
|
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|
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</div>
|
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|
+
|
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|
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|
|
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|
+
<div class="method-description">
|
|
365
|
+
|
|
366
|
+
<p>The “best critter” is the critter with the lowest (closet to zero) fitness
|
|
367
|
+
rating.</p>
|
|
368
|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
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<div class="method-source-code" id="best_critter-source">
|
|
373
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 176</span>
|
|
374
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">best_critter</span>
|
|
375
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.<span class="ruby-identifier">nil?</span>
|
|
376
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">min</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.(<span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span>, <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>) }
|
|
377
|
+
<span class="ruby-keyword">else</span>
|
|
378
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">min</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator"><=></span> <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>}
|
|
379
|
+
<span class="ruby-keyword">end</span>
|
|
380
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
+
</div>
|
|
382
|
+
|
|
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|
+
</div>
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
</div>
|
|
389
|
+
|
|
390
|
+
|
|
391
|
+
<div id="method-i-dump_s" class="method-detail ">
|
|
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|
+
|
|
393
|
+
<div class="method-heading">
|
|
394
|
+
<span class="method-name">dump_s</span><span
|
|
395
|
+
class="method-args">()</span>
|
|
396
|
+
|
|
397
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
398
|
+
|
|
399
|
+
</div>
|
|
400
|
+
|
|
401
|
+
|
|
402
|
+
<div class="method-description">
|
|
403
|
+
|
|
404
|
+
|
|
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|
+
|
|
406
|
+
|
|
407
|
+
|
|
408
|
+
|
|
409
|
+
<div class="method-source-code" id="dump_s-source">
|
|
410
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 194</span>
|
|
411
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">dump_s</span>
|
|
412
|
+
<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">"\npopulation:\n"</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">dump_s</span> }.<span class="ruby-identifier">join</span>(<span class="ruby-string">"\n"</span>)
|
|
413
|
+
<span class="ruby-keyword">end</span></pre>
|
|
414
|
+
</div>
|
|
415
|
+
|
|
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|
+
</div>
|
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|
+
|
|
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|
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|
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|
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|
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|
|
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|
+
</div>
|
|
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|
+
|
|
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|
+
|
|
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|
+
<div id="method-i-evaluate-21" class="method-detail ">
|
|
425
|
+
|
|
426
|
+
<div class="method-heading">
|
|
427
|
+
<span class="method-name">evaluate!</span><span
|
|
428
|
+
class="method-args">()</span>
|
|
429
|
+
|
|
430
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
431
|
+
|
|
432
|
+
</div>
|
|
433
|
+
|
|
434
|
+
|
|
435
|
+
<div class="method-description">
|
|
436
|
+
|
|
437
|
+
<p>Called for each sequence.</p>
|
|
438
|
+
|
|
439
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 69</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evaluate!</span>
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<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">evaluate!</span> }
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-evolve" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">evolve</span><span
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class="method-args">()</span>
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<p>Call this after evaluation. Returns a newly-evolved population.</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 80</span>
|
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+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">evolve</span>
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<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evolver</span>.<span class="ruby-identifier">evolve</span> <span class="ruby-keyword">self</span>
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<span class="ruby-keyword">end</span></pre>
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</div>
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<div id="method-i-express-21" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">express!</span><span
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class="method-args">()</span>
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<p>Express the entire population.</p>
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<div class="method-source-code" id="express-21-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 64</span>
|
|
510
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+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express!</span>
|
|
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+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">express!</span> }
|
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+
<span class="ruby-keyword">end</span></pre>
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+
</div>
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</div>
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</div>
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<div id="method-i-initialize_for_recurrence-21" class="method-detail ">
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+
|
|
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<div class="method-heading">
|
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+
<span class="method-name">initialize_for_recurrence!</span><span
|
|
527
|
+
class="method-args">()</span>
|
|
528
|
+
|
|
529
|
+
<span class="method-click-advice">click to toggle source</span>
|
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+
|
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531
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+
</div>
|
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+
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+
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<div class="method-description">
|
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535
|
+
|
|
536
|
+
<p>Make sure all critters are reset and prepared for recurrent network
|
|
537
|
+
evaluation.</p>
|
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+
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539
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+
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+
|
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+
|
|
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+
<div class="method-source-code" id="initialize_for_recurrence-21-source">
|
|
543
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 54</span>
|
|
544
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize_for_recurrence!</span>
|
|
545
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">initialize_neurons!</span>}
|
|
546
|
+
<span class="ruby-keyword">end</span></pre>
|
|
547
|
+
</div>
|
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|
+
|
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549
|
+
</div>
|
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+
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+
</div>
|
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+
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|
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|
+
<div id="method-i-mutate-21" class="method-detail ">
|
|
558
|
+
|
|
559
|
+
<div class="method-heading">
|
|
560
|
+
<span class="method-name">mutate!</span><span
|
|
561
|
+
class="method-args">()</span>
|
|
562
|
+
|
|
563
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
564
|
+
|
|
565
|
+
</div>
|
|
566
|
+
|
|
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|
+
|
|
568
|
+
<div class="method-description">
|
|
569
|
+
|
|
570
|
+
<p>Mutate the genes and neurons.</p>
|
|
571
|
+
|
|
572
|
+
|
|
573
|
+
|
|
574
|
+
|
|
575
|
+
<div class="method-source-code" id="mutate-21-source">
|
|
576
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 59</span>
|
|
577
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutate!</span>
|
|
578
|
+
<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evolver</span>.<span class="ruby-identifier">mutate!</span> <span class="ruby-keyword">self</span>
|
|
579
|
+
<span class="ruby-keyword">end</span></pre>
|
|
580
|
+
</div>
|
|
581
|
+
|
|
582
|
+
</div>
|
|
583
|
+
|
|
584
|
+
|
|
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|
+
|
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|
+
|
|
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|
+
</div>
|
|
588
|
+
|
|
589
|
+
|
|
590
|
+
<div id="method-i-report" class="method-detail ">
|
|
591
|
+
|
|
592
|
+
<div class="method-heading">
|
|
593
|
+
<span class="method-name">report</span><span
|
|
594
|
+
class="method-args">()</span>
|
|
595
|
+
|
|
596
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
597
|
+
|
|
598
|
+
</div>
|
|
599
|
+
|
|
600
|
+
|
|
601
|
+
<div class="method-description">
|
|
602
|
+
|
|
603
|
+
<h2 id="method-i-report-label-Generate+a+report+on+the+state+of+this+population.">Generate a report on the state of this population.<span><a href="#method-i-report-label-Generate+a+report+on+the+state+of+this+population.">¶</a> <a href="#documentation">↑</a></span></h2>
|
|
604
|
+
|
|
605
|
+
|
|
606
|
+
|
|
607
|
+
|
|
608
|
+
<div class="method-source-code" id="report-source">
|
|
609
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 165</span>
|
|
610
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report</span>
|
|
611
|
+
{
|
|
612
|
+
<span class="ruby-identifier">fitness</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_fitness</span>,
|
|
613
|
+
<span class="ruby-identifier">fitness_species</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_fitness_species</span>,
|
|
614
|
+
<span class="ruby-identifier">best_critter</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_best_fit</span>,
|
|
615
|
+
<span class="ruby-identifier">worst_critter</span><span class="ruby-operator">:</span> <span class="ruby-identifier">report_worst_fit</span>,
|
|
616
|
+
}
|
|
617
|
+
<span class="ruby-keyword">end</span></pre>
|
|
618
|
+
</div>
|
|
619
|
+
|
|
620
|
+
</div>
|
|
621
|
+
|
|
622
|
+
|
|
623
|
+
|
|
624
|
+
|
|
625
|
+
</div>
|
|
626
|
+
|
|
627
|
+
|
|
628
|
+
<div id="method-i-speciate-21" class="method-detail ">
|
|
629
|
+
|
|
630
|
+
<div class="method-heading">
|
|
631
|
+
<span class="method-name">speciate!</span><span
|
|
632
|
+
class="method-args">()</span>
|
|
633
|
+
|
|
634
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
635
|
+
|
|
636
|
+
</div>
|
|
637
|
+
|
|
638
|
+
|
|
639
|
+
<div class="method-description">
|
|
640
|
+
|
|
641
|
+
<pre>Group critters into species
|
|
642
|
+
Note that the @species objects
|
|
643
|
+
have useful singleton methods:</pre>
|
|
644
|
+
<ul><li>
|
|
645
|
+
<p>@species.member? – checks all of the lists for membership, not just the
|
|
646
|
+
hash</p>
|
|
647
|
+
</li><li>
|
|
648
|
+
<p>@<a href="crit">species</a>.fitness – fitness of the entire species</p>
|
|
649
|
+
</li></ul>
|
|
650
|
+
|
|
651
|
+
|
|
652
|
+
|
|
653
|
+
|
|
654
|
+
<div class="method-source-code" id="speciate-21-source">
|
|
655
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 89</span>
|
|
656
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">speciate!</span>
|
|
657
|
+
<span class="ruby-comment"># We blow away existing species and create our own member? function</span>
|
|
658
|
+
<span class="ruby-ivar">@species</span> = {} <span class="ruby-comment"># lists keyed by representative critter</span>
|
|
659
|
+
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">crit</span>)
|
|
660
|
+
<span class="ruby-keyword">super</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">crit</span>) <span class="ruby-keyword">or</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">li</span><span class="ruby-operator">|</span> <span class="ruby-identifier">li</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">crit</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">t1</span>, <span class="ruby-identifier">t2</span><span class="ruby-operator">|</span> <span class="ruby-identifier">t1</span> <span class="ruby-keyword">or</span> <span class="ruby-identifier">t2</span> }
|
|
661
|
+
<span class="ruby-keyword">end</span>
|
|
662
|
+
|
|
663
|
+
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">evaluate!</span>
|
|
664
|
+
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
|
|
665
|
+
<span class="ruby-identifier">sp</span>.<span class="ruby-identifier">fitness</span> = <span class="ruby-identifier">sp</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span> <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">fitness</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>,<span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span><span class="ruby-operator">+</span><span class="ruby-identifier">b</span>} <span class="ruby-operator">/</span> <span class="ruby-identifier">sp</span>.<span class="ruby-identifier">size</span>
|
|
666
|
+
<span class="ruby-keyword">end</span>
|
|
667
|
+
<span class="ruby-keyword">end</span>
|
|
668
|
+
|
|
669
|
+
<span class="ruby-keyword">def</span> <span class="ruby-ivar">@species</span>.<span class="ruby-identifier">compactify!</span>(<span class="ruby-identifier">parm</span>)
|
|
670
|
+
<span class="ruby-identifier">mutt</span> = <span class="ruby-keyword">self</span>[<span class="ruby-value">:mutt</span>] = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span> [<span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span>]}.<span class="ruby-identifier">reject</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span>
|
|
671
|
+
<span class="ruby-identifier">splist</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">>=</span> <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">smallest_species</span>
|
|
672
|
+
}.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">splist</span><span class="ruby-operator">|</span>
|
|
673
|
+
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">delete</span> <span class="ruby-identifier">k</span>
|
|
674
|
+
<span class="ruby-identifier">splist</span>
|
|
675
|
+
}.<span class="ruby-identifier">flatten</span>
|
|
676
|
+
|
|
677
|
+
<span class="ruby-comment"># FIXME this code is not dry!!!!</span>
|
|
678
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutt</span>.<span class="ruby-identifier">fitness=</span>(<span class="ruby-identifier">fit</span>)
|
|
679
|
+
<span class="ruby-ivar">@fitness</span> = <span class="ruby-identifier">fit</span>
|
|
680
|
+
<span class="ruby-keyword">end</span>
|
|
681
|
+
|
|
682
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">mutt</span>.<span class="ruby-identifier">fitness</span>
|
|
683
|
+
<span class="ruby-ivar">@fitness</span>
|
|
684
|
+
<span class="ruby-keyword">end</span>
|
|
685
|
+
|
|
686
|
+
<span class="ruby-keyword">self</span>.<span class="ruby-identifier">delete</span> <span class="ruby-value">:mutt</span> <span class="ruby-keyword">if</span> <span class="ruby-keyword">self</span>[<span class="ruby-value">:mutt</span>].<span class="ruby-identifier">empty?</span>
|
|
687
|
+
<span class="ruby-keyword">end</span>
|
|
688
|
+
|
|
689
|
+
<span class="ruby-comment"># Some convience parms</span>
|
|
690
|
+
<span class="ruby-identifier">parm</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>
|
|
691
|
+
|
|
692
|
+
<span class="ruby-comment"># And so now we iterate...</span>
|
|
693
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">crit</span><span class="ruby-operator">|</span>
|
|
694
|
+
<span class="ruby-identifier">wearein</span> = <span class="ruby-keyword">false</span>
|
|
695
|
+
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">ck</span>, <span class="ruby-identifier">list</span><span class="ruby-operator">|</span>
|
|
696
|
+
<span class="ruby-identifier">delta</span> = <span class="ruby-identifier">crit</span>.<span class="ruby-identifier">compare</span>(<span class="ruby-identifier">ck</span>)
|
|
697
|
+
<span class="ruby-comment">#log.debug { "delta for #{crit} and #{ck} is #{delta}" }</span>
|
|
698
|
+
<span class="ruby-keyword">if</span> <span class="ruby-identifier">delta</span> <span class="ruby-operator"><</span> <span class="ruby-identifier">parm</span>.<span class="ruby-identifier">compatibility_threshold</span>
|
|
699
|
+
<span class="ruby-identifier">list</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">crit</span>
|
|
700
|
+
<span class="ruby-identifier">wearein</span> = <span class="ruby-keyword">true</span>
|
|
701
|
+
<span class="ruby-keyword">break</span>
|
|
702
|
+
<span class="ruby-keyword">end</span>
|
|
703
|
+
<span class="ruby-keyword">end</span>
|
|
704
|
+
|
|
705
|
+
<span class="ruby-comment"># New species?</span>
|
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706
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-identifier">wearein</span>
|
|
707
|
+
<span class="ruby-ivar">@species</span>[<span class="ruby-identifier">crit</span>] = <span class="ruby-identifier">species</span> = [<span class="ruby-identifier">crit</span>]
|
|
708
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">species</span>.<span class="ruby-identifier">fitness=</span>(<span class="ruby-identifier">fit</span>)
|
|
709
|
+
<span class="ruby-ivar">@fitness</span> = <span class="ruby-identifier">fit</span>
|
|
710
|
+
<span class="ruby-keyword">end</span>
|
|
711
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">species</span>.<span class="ruby-identifier">fitness</span>
|
|
712
|
+
<span class="ruby-ivar">@fitness</span>
|
|
713
|
+
<span class="ruby-keyword">end</span>
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714
|
+
<span class="ruby-keyword">end</span>
|
|
715
|
+
<span class="ruby-keyword">end</span>
|
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716
|
+
|
|
717
|
+
<span class="ruby-comment"># Compactify the species if less than smallest_species</span>
|
|
718
|
+
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">compactify!</span> <span class="ruby-identifier">parm</span>
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719
|
+
|
|
720
|
+
<span class="ruby-comment"># And now we evaluate all species for fitness...</span>
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721
|
+
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">evaluate!</span>
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|
722
|
+
|
|
723
|
+
<span class="ruby-comment"># Dump for debugging reasons</span>
|
|
724
|
+
<span class="ruby-ivar">@species</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">sp</span><span class="ruby-operator">|</span>
|
|
725
|
+
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">">> Species #{k} has #{sp.size} members with a #{sp.fitness} fitness"</span>
|
|
726
|
+
<span class="ruby-keyword">end</span>
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727
|
+
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|
728
|
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<span class="ruby-keyword">end</span></pre>
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729
|
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</div>
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730
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731
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<div id="method-i-worst_critter" class="method-detail ">
|
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|
+
|
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741
|
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<div class="method-heading">
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742
|
+
<span class="method-name">worst_critter</span><span
|
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743
|
+
class="method-args">()</span>
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744
|
+
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745
|
+
<span class="method-click-advice">click to toggle source</span>
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|
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751
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752
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<p>The “worst critter” is the critter with the highest (away from zero)
|
|
753
|
+
fitness rating.</p>
|
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756
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<div class="method-source-code" id="worst_critter-source">
|
|
759
|
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<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 186</span>
|
|
760
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">worst_critter</span>
|
|
761
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.<span class="ruby-identifier">nil?</span>
|
|
762
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">max</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">compare_func</span>.(<span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span>, <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>) }
|
|
763
|
+
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|
|
764
|
+
<span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">max</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">a</span>.<span class="ruby-identifier">fitness</span> <span class="ruby-operator"><=></span> <span class="ruby-identifier">b</span>.<span class="ruby-identifier">fitness</span>}
|
|
765
|
+
<span class="ruby-keyword">end</span>
|
|
766
|
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<span class="ruby-keyword">end</span></pre>
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|
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|
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</section>
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|
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|
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<section id="protected-instance-5Buntitled-5D-method-details" class="method-section">
|
|
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|
+
<header>
|
|
781
|
+
<h3>Protected Instance Methods</h3>
|
|
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|
+
</header>
|
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783
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|
|
784
|
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|
|
785
|
+
<div id="method-i-report_best_fit" class="method-detail ">
|
|
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|
+
|
|
787
|
+
<div class="method-heading">
|
|
788
|
+
<span class="method-name">report_best_fit</span><span
|
|
789
|
+
class="method-args">()</span>
|
|
790
|
+
|
|
791
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
792
|
+
|
|
793
|
+
</div>
|
|
794
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+
|
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795
|
+
|
|
796
|
+
<div class="method-description">
|
|
797
|
+
|
|
798
|
+
<p>Find the best fit critter</p>
|
|
799
|
+
|
|
800
|
+
|
|
801
|
+
|
|
802
|
+
|
|
803
|
+
<div class="method-source-code" id="report_best_fit-source">
|
|
804
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 217</span>
|
|
805
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_best_fit</span>
|
|
806
|
+
<span class="ruby-identifier">best_critter</span>.<span class="ruby-identifier">phenotype</span>.<span class="ruby-identifier">code</span>
|
|
807
|
+
<span class="ruby-keyword">end</span></pre>
|
|
808
|
+
</div>
|
|
809
|
+
|
|
810
|
+
</div>
|
|
811
|
+
|
|
812
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+
|
|
813
|
+
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814
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+
|
|
815
|
+
</div>
|
|
816
|
+
|
|
817
|
+
|
|
818
|
+
<div id="method-i-report_fitness" class="method-detail ">
|
|
819
|
+
|
|
820
|
+
<div class="method-heading">
|
|
821
|
+
<span class="method-name">report_fitness</span><span
|
|
822
|
+
class="method-args">()</span>
|
|
823
|
+
|
|
824
|
+
<span class="method-click-advice">click to toggle source</span>
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|
825
|
+
|
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826
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+
</div>
|
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827
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+
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828
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+
|
|
829
|
+
<div class="method-description">
|
|
830
|
+
|
|
831
|
+
<p>report on many fitness metrics</p>
|
|
832
|
+
|
|
833
|
+
|
|
834
|
+
|
|
835
|
+
|
|
836
|
+
<div class="method-source-code" id="report_fitness-source">
|
|
837
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 200</span>
|
|
838
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_fitness</span>
|
|
839
|
+
{
|
|
840
|
+
<span class="ruby-identifier">overall</span><span class="ruby-operator">:</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">critter</span><span class="ruby-operator">|</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">fitness</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">f</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">f</span>} <span class="ruby-operator">/</span> <span class="ruby-ivar">@critters</span>.<span class="ruby-identifier">size</span>,
|
|
841
|
+
<span class="ruby-identifier">best</span><span class="ruby-operator">:</span> <span class="ruby-identifier">best_critter</span>.<span class="ruby-identifier">fitness</span>,
|
|
842
|
+
<span class="ruby-identifier">worst</span><span class="ruby-operator">:</span> <span class="ruby-identifier">worst_critter</span>.<span class="ruby-identifier">fitness</span>,
|
|
843
|
+
}
|
|
844
|
+
<span class="ruby-keyword">end</span></pre>
|
|
845
|
+
</div>
|
|
846
|
+
|
|
847
|
+
</div>
|
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848
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849
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850
|
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|
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851
|
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|
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852
|
+
</div>
|
|
853
|
+
|
|
854
|
+
|
|
855
|
+
<div id="method-i-report_fitness_species" class="method-detail ">
|
|
856
|
+
|
|
857
|
+
<div class="method-heading">
|
|
858
|
+
<span class="method-name">report_fitness_species</span><span
|
|
859
|
+
class="method-args">()</span>
|
|
860
|
+
|
|
861
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
862
|
+
|
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863
|
+
</div>
|
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864
|
+
|
|
865
|
+
|
|
866
|
+
<div class="method-description">
|
|
867
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+
|
|
868
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+
<p>report on the best and worst species</p>
|
|
869
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+
|
|
870
|
+
|
|
871
|
+
|
|
872
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+
|
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873
|
+
<div class="method-source-code" id="report_fitness_species-source">
|
|
874
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 209</span>
|
|
875
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_fitness_species</span>
|
|
876
|
+
{
|
|
877
|
+
<span class="ruby-identifier">best</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
|
878
|
+
<span class="ruby-identifier">worst</span><span class="ruby-operator">:</span> <span class="ruby-keyword">nil</span>,
|
|
879
|
+
}
|
|
880
|
+
<span class="ruby-keyword">end</span></pre>
|
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881
|
+
</div>
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882
|
+
|
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883
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+
</div>
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+
</div>
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889
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|
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890
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891
|
+
<div id="method-i-report_worst_fit" class="method-detail ">
|
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892
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+
|
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893
|
+
<div class="method-heading">
|
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894
|
+
<span class="method-name">report_worst_fit</span><span
|
|
895
|
+
class="method-args">()</span>
|
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896
|
+
|
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897
|
+
<span class="method-click-advice">click to toggle source</span>
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898
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+
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899
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+
</div>
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900
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+
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901
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+
|
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902
|
+
<div class="method-description">
|
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903
|
+
|
|
904
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+
<p>Find the worst fit critter</p>
|
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905
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+
|
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906
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+
|
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907
|
+
|
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908
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909
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<div class="method-source-code" id="report_worst_fit-source">
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910
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/population.rb, line 222</span>
|
|
911
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report_worst_fit</span>
|
|
912
|
+
<span class="ruby-identifier">worst_critter</span>.<span class="ruby-identifier">phenotype</span>.<span class="ruby-identifier">code</span>
|
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913
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+
<span class="ruby-keyword">end</span></pre>
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</section>
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</main>
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<footer id="validator-badges" role="contentinfo">
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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932
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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