rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
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  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
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  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
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  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
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  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
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  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
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  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
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  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
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  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
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  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
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  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
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  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
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  160. data/rdoc/Phi.html +98 -0
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  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
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  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
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  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
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data/doc/NEAT.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Module: NEAT
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+
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+ &mdash; Documentation by YARD 0.8.7.4
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+
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+ </title>
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+
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+ <link rel="stylesheet" href="css/style.css" type="text/css" charset="utf-8" />
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+ <link rel="stylesheet" href="css/common.css" type="text/css" charset="utf-8" />
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+
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
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+ relpath = '';
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+ framesUrl = "frames.html#!NEAT.html";
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+ </script>
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+
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+ <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
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+ <script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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+
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+ </head>
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+ <body>
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+ <div id="header">
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+ <div id="menu">
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+
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+ <a href="_index.html">Index (N)</a> &raquo;
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+
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+
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+ <span class="title">NEAT</span>
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+
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+
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+
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+ <div id="search">
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+
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+ <a class="full_list_link" id="class_list_link"
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+ href="class_list.html">
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+ Class List
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+ </a>
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+
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+ <a class="full_list_link" id="method_list_link"
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+ href="method_list.html">
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+ Method List
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+ </a>
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+
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+ <a class="full_list_link" id="file_list_link"
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+ href="file_list.html">
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+ File List
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+ </a>
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+
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Module: NEAT
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+
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+
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+
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+ </h1>
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+
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+ <dl class="box">
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+
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+
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+ <dt class="r1">Included in:</dt>
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+ <dd class="r1"><span class='object_link'><a href="NEAT/DSL.html" title="NEAT::DSL (module)">DSL</a></span></dd>
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+
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+
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+
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+ <dt class="r2 last">Defined in:</dt>
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+ <dd class="r2 last">lib/rubyneat/dsl.rb<span class="defines">,<br />
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+ lib/rubyneat/graph.rb,<br /> lib/rubyneat/neuron.rb,<br /> lib/rubyneat/critter.rb,<br /> lib/rubyneat/evolver.rb,<br /> lib/rubyneat/rubyneat.rb,<br /> lib/rubyneat/expressor.rb,<br /> lib/rubyneat/evaluator.rb,<br /> lib/rubyneat/population.rb</span>
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+ </dd>
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+
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+ </dl>
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+ <div class="clear"></div>
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+
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+ <h2>Overview</h2><div class="docstring">
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+ <div class="discussion">
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+
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+ <h1 id="label-NEAT+--+Module+for+RubyNEAT.">NEAT – Module for RubyNEAT.</h1>
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+
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+ <h2 id="label-Synopsis">Synopsis</h2>
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+
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+ <p>We have a Population of Critters, and each Critter represents a network of
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+ Neurons and a connection list specifying how those Neurons are connected.</p>
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+
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+ <p>Each Neuron has an inplicit genotype and phenotype component. Neurons, from
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+ the Ruby persoective, contain their own code to produce their own
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+ phenotypes.</p>
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+
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+ <p>There are input Neurons and output Neurons. The input Neurons are special,
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+ as they do not contain any input from other nodes, but serve as interfaces
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+ from the “real world”. Thier range of inputs are open, and it shall be up
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+ to the input Neuron&#39;s phenotype generators to condition those inputs,
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+ if need be, to someething more suiable for the neural network.</p>
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+
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+ <h2 id="label-Issues">Issues</h2>
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+
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+ <h3 id="label-Multicore+%2F+Cloud+Computing">Multicore / Cloud Computing</h3>
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+
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+ <p>Some thought needs to be given to how to make this anenable to multiple
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+ processes so that we can leverage the power of multicore systems as well as
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+ multiple computers in the Cloud, etc.</p>
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+
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+ <p>Our initial inclination is to put all of that functionality in the
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+ Conroller.</p>
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+ </div><h2>Defined Under Namespace</h2>
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+ <p class="children">
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+
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+ <strong class="modules">Modules:</strong> <span class='object_link'><a href="NEAT/BasicNeuronTypes.html" title="NEAT::BasicNeuronTypes (module)">BasicNeuronTypes</a></span>, <span class='object_link'><a href="NEAT/DSL.html" title="NEAT::DSL (module)">DSL</a></span>, <span class='object_link'><a href="NEAT/Graph.html" title="NEAT::Graph (module)">Graph</a></span>
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+
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+
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+
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+ <strong class="classes">Classes:</strong> <span class='object_link'><a href="NEAT/Controller.html" title="NEAT::Controller (class)">Controller</a></span>, <span class='object_link'><a href="NEAT/Critter.html" title="NEAT::Critter (class)">Critter</a></span>, <span class='object_link'><a href="NEAT/Evaluator.html" title="NEAT::Evaluator (class)">Evaluator</a></span>, <span class='object_link'><a href="NEAT/Evolver.html" title="NEAT::Evolver (class)">Evolver</a></span>, <span class='object_link'><a href="NEAT/Expressor.html" title="NEAT::Expressor (class)">Expressor</a></span>, <span class='object_link'><a href="NEAT/NeatException.html" title="NEAT::NeatException (class)">NeatException</a></span>, <span class='object_link'><a href="NEAT/NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span>, <span class='object_link'><a href="NEAT/Neuron.html" title="NEAT::Neuron (class)">Neuron</a></span>, <span class='object_link'><a href="NEAT/Operator.html" title="NEAT::Operator (class)">Operator</a></span>, <span class='object_link'><a href="NEAT/Population.html" title="NEAT::Population (class)">Population</a></span>, <span class='object_link'><a href="NEAT/Trait.html" title="NEAT::Trait (class)">Trait</a></span>
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+
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+
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+ </p>
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+
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+ <h2>Constant Summary</h2>
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+
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+ <dl class="constants">
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+
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+ <dt id="STIMULUS-constant" class="">STIMULUS =
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+ <div class="docstring">
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+ <div class="discussion">
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+
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+ <p>Name of the stimulus method in NEAT::Critter::Phenotype to use for the
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+ singleton method expression of the critter.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div>
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+ </dt>
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+ <dd><pre class="code"><span class='symbol'>:stimulate</span></pre></dd>
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+
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+ </dl>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <h2>
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+ Class Method Summary
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+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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+ </h2>
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+
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+ <ul class="summary">
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#controller-class_method" title="controller (class method)">+ (Object) <strong>controller</strong> </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'></div></span>
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+
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+ </li>
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+
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#controller%3D-class_method" title="controller= (class method)">+ (Object) <strong>controller=</strong>(controller) </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'></div></span>
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+
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+ </li>
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+
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#create_controller-class_method" title="create_controller (class method)">+ (Object) <strong>create_controller</strong>(*parms) </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'></div></span>
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+
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+ </li>
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+
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+
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+ <li class="public ">
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+ <span class="summary_signature">
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+
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+ <a href="#dpp-class_method" title="dpp (class method)">+ (Object) <strong>dpp</strong>(ob) </a>
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+
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+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'>
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+ <p>PrettyPrint to log.debug.</p>
266
+ </div></span>
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+
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+ </li>
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+
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+
271
+ <li class="public ">
272
+ <span class="summary_signature">
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+
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+ <a href="#gaussian-class_method" title="gaussian (class method)">+ (Object) <strong>gaussian</strong> </a>
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+
276
+
277
+
278
+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'>
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+ <p>Mixin for the gaussian object.</p>
290
+ </div></span>
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+
292
+ </li>
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+
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+
295
+ <li class="public ">
296
+ <span class="summary_signature">
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+
298
+ <a href="#new_innovation-class_method" title="new_innovation (class method)">+ (Object) <strong>new_innovation</strong> </a>
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+
300
+
301
+
302
+ </span>
303
+
304
+
305
+
306
+
307
+
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+
309
+
310
+
311
+
312
+ <span class="summary_desc"><div class='inline'>
313
+ <p>Mixin for new innovation numbers.</p>
314
+ </div></span>
315
+
316
+ </li>
317
+
318
+
319
+ <li class="public ">
320
+ <span class="summary_signature">
321
+
322
+ <a href="#random_name_generator-class_method" title="random_name_generator (class method)">+ (Object) <strong>random_name_generator</strong> </a>
323
+
324
+
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+
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+ </span>
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <span class="summary_desc"><div class='inline'></div></span>
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+
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+ </li>
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+
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+
341
+ </ul>
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+
343
+
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+
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+
346
+ <div id="class_method_details" class="method_details_list">
347
+ <h2>Class Method Details</h2>
348
+
349
+
350
+ <div class="method_details first">
351
+ <h3 class="signature first" id="controller-class_method">
352
+
353
+ + (<tt>Object</tt>) <strong>controller</strong>
354
+
355
+
356
+
357
+
358
+
359
+ </h3><table class="source_code">
360
+ <tr>
361
+ <td>
362
+ <pre class="lines">
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+
364
+
365
+ 422</pre>
366
+ </td>
367
+ <td>
368
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 422</span>
369
+
370
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_controller'>controller</span> <span class='semicolon'>;</span> <span class='ivar'>@controller</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
371
+ </td>
372
+ </tr>
373
+ </table>
374
+ </div>
375
+
376
+ <div class="method_details ">
377
+ <h3 class="signature " id="controller=-class_method">
378
+
379
+ + (<tt>Object</tt>) <strong>controller=</strong>(controller)
380
+
381
+
382
+
383
+
384
+
385
+ </h3><table class="source_code">
386
+ <tr>
387
+ <td>
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+ <pre class="lines">
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+
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+
391
+ 423</pre>
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+ </td>
393
+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 423</span>
395
+
396
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_controller='>controller=</span><span class='lparen'>(</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span> <span class='semicolon'>;</span> <span class='ivar'>@controller</span> <span class='op'>=</span> <span class='id identifier rubyid_controller'>controller</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
397
+ </td>
398
+ </tr>
399
+ </table>
400
+ </div>
401
+
402
+ <div class="method_details ">
403
+ <h3 class="signature " id="create_controller-class_method">
404
+
405
+ + (<tt>Object</tt>) <strong>create_controller</strong>(*parms)
406
+
407
+
408
+
409
+
410
+
411
+ </h3><table class="source_code">
412
+ <tr>
413
+ <td>
414
+ <pre class="lines">
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+
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+
417
+ 424</pre>
418
+ </td>
419
+ <td>
420
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 424</span>
421
+
422
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_create_controller'>create_controller</span><span class='lparen'>(</span><span class='op'>*</span><span class='id identifier rubyid_parms'>parms</span><span class='rparen'>)</span><span class='semicolon'>;</span> <span class='ivar'>@controller</span> <span class='op'>=</span> <span class='const'>Controller</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='op'>*</span><span class='id identifier rubyid_parms'>parms</span><span class='rparen'>)</span><span class='semicolon'>;</span> <span class='kw'>end</span></pre>
423
+ </td>
424
+ </tr>
425
+ </table>
426
+ </div>
427
+
428
+ <div class="method_details ">
429
+ <h3 class="signature " id="dpp-class_method">
430
+
431
+ + (<tt>Object</tt>) <strong>dpp</strong>(ob)
432
+
433
+
434
+
435
+
436
+
437
+ </h3><div class="docstring">
438
+ <div class="discussion">
439
+
440
+ <p>PrettyPrint to log.debug</p>
441
+
442
+
443
+ </div>
444
+ </div>
445
+ <div class="tags">
446
+
447
+
448
+ </div><table class="source_code">
449
+ <tr>
450
+ <td>
451
+ <pre class="lines">
452
+
453
+
454
+ 77
455
+ 78
456
+ 79</pre>
457
+ </td>
458
+ <td>
459
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 77</span>
460
+
461
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_dpp'>dpp</span> <span class='id identifier rubyid_ob'>ob</span>
462
+ <span class='comment'>#$log.ap ob
463
+ </span><span class='kw'>end</span></pre>
464
+ </td>
465
+ </tr>
466
+ </table>
467
+ </div>
468
+
469
+ <div class="method_details ">
470
+ <h3 class="signature " id="gaussian-class_method">
471
+
472
+ + (<tt>Object</tt>) <strong>gaussian</strong>
473
+
474
+
475
+
476
+
477
+
478
+ </h3><div class="docstring">
479
+ <div class="discussion">
480
+
481
+ <p>Mixin for the gaussian object.</p>
482
+
483
+
484
+ </div>
485
+ </div>
486
+ <div class="tags">
487
+
488
+
489
+ </div><table class="source_code">
490
+ <tr>
491
+ <td>
492
+ <pre class="lines">
493
+
494
+
495
+ 74</pre>
496
+ </td>
497
+ <td>
498
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 74</span>
499
+
500
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_gaussian'>gaussian</span> <span class='semicolon'>;</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_gaussian'>gaussian</span><span class='semicolon'>;</span> <span class='kw'>end</span></pre>
501
+ </td>
502
+ </tr>
503
+ </table>
504
+ </div>
505
+
506
+ <div class="method_details ">
507
+ <h3 class="signature " id="new_innovation-class_method">
508
+
509
+ + (<tt>Object</tt>) <strong>new_innovation</strong>
510
+
511
+
512
+
513
+
514
+
515
+ </h3><div class="docstring">
516
+ <div class="discussion">
517
+
518
+ <p>Mixin for new innovation numbers.</p>
519
+
520
+
521
+ </div>
522
+ </div>
523
+ <div class="tags">
524
+
525
+
526
+ </div><table class="source_code">
527
+ <tr>
528
+ <td>
529
+ <pre class="lines">
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+
531
+
532
+ 71</pre>
533
+ </td>
534
+ <td>
535
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 71</span>
536
+
537
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_new_innovation'>new_innovation</span><span class='semicolon'>;</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_new_innovation'>new_innovation</span><span class='semicolon'>;</span> <span class='kw'>end</span></pre>
538
+ </td>
539
+ </tr>
540
+ </table>
541
+ </div>
542
+
543
+ <div class="method_details ">
544
+ <h3 class="signature " id="random_name_generator-class_method">
545
+
546
+ + (<tt>Object</tt>) <strong>random_name_generator</strong>
547
+
548
+
549
+
550
+
551
+
552
+ </h3><table class="source_code">
553
+ <tr>
554
+ <td>
555
+ <pre class="lines">
556
+
557
+
558
+ 60
559
+ 61
560
+ 62
561
+ 63
562
+ 64</pre>
563
+ </td>
564
+ <td>
565
+ <pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 60</span>
566
+
567
+ <span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_random_name_generator'>random_name_generator</span>
568
+ <span class='lparen'>(</span><span class='int'>1</span><span class='op'>..</span><span class='int'>3</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span>
569
+ <span class='ivar'>@rng_names</span><span class='lbracket'>[</span><span class='id identifier rubyid_rand'>rand</span> <span class='ivar'>@rng_names</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='rbracket'>]</span>
570
+ <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_push'>push</span><span class='lparen'>(</span><span class='ivar'>@rng_count</span> <span class='op'>+=</span> <span class='int'>1</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_join'>join</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>&#39;</span><span class='tstring_content'>_</span><span class='tstring_end'>&#39;</span></span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_to_sym'>to_sym</span>
571
+ <span class='kw'>end</span></pre>
572
+ </td>
573
+ </tr>
574
+ </table>
575
+ </div>
576
+
577
+ </div>
578
+
579
+ </div>
580
+
581
+ <div id="footer">
582
+ Generated on Sun Apr 13 15:54:01 2014 by
583
+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
584
+ 0.8.7.4 (ruby-2.1.1).
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+ </div>
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+
587
+ </body>
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+ </html>