rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
  22. data/.yardoc/objects/root.dat +0 -0
  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
  55. data/doc/NEAT/Graph.html +402 -0
  56. data/doc/NEAT/NeatException.html +123 -0
  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
  80. data/foo/icon.png +0 -0
  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
  101. data/public/background.png +0 -0
  102. data/public/background.xcf +0 -0
  103. data/public/cart.png +0 -0
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  129. data/rdoc/InvertedPendulum.html +198 -0
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  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
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  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
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  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
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  159. data/rdoc/Object.html +384 -0
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  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
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  166. data/rdoc/SDL.html +98 -0
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  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
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  204. data/rdoc/doc/css/full_list_css.html +243 -0
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  207. data/rdoc/doc/frames_html.html +217 -0
  208. data/rdoc/doc/index_html.html +559 -0
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  211. data/rdoc/doc/js/jquery_js.html +1536 -0
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  246. data/rdoc/index.html +282 -0
  247. data/rdoc/js/darkfish.js +140 -0
  248. data/rdoc/js/jquery.js +18 -0
  249. data/rdoc/js/navigation.js +142 -0
  250. data/rdoc/js/search.js +109 -0
  251. data/rdoc/js/search_index.js +1 -0
  252. data/rdoc/js/searcher.js +228 -0
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  256. data/rdoc/xordebug_log.html +170598 -0
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  258. data/rubyneat.gemspec +347 -0
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  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+ <title>Evolver.html - rubyneat 0.3.4</title>
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+ <script src="../../js/navigation.js"></script>
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+ <script src="../../js/searcher.js"></script>
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+ <script src="../../js/darkfish.js"></script>
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <div id="search-field-wrapper">
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ href=&quot;../file_list.html&quot;&gt;
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+ &lt;/div&gt;
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+
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+ &lt;iframe id=&quot;search_frame&quot;&gt;&lt;/iframe&gt;
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+
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+ &lt;div id=&quot;content&quot;&gt;&lt;h1&gt;Class: NEAT::Evolver</pre>
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+
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+ <p>&lt;/h1&gt;</p>
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+
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+ <p>&lt;dl class=“box”&gt;</p>
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+
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+ <pre>&lt;dt class=&quot;r1&quot;&gt;Inherits:&lt;/dt&gt;
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+ &lt;dd class=&quot;r1&quot;&gt;
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+ &lt;span class=&quot;inheritName&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Operator.html&quot; title=&quot;NEAT::Operator (class)&quot;&gt;Operator&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+
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+ &lt;ul class=&quot;fullTree&quot;&gt;
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+ &lt;li&gt;Object&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Operator.html&quot; title=&quot;NEAT::Operator (class)&quot;&gt;Operator&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;NEAT::Evolver&lt;/li&gt;
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+
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+ &lt;/ul&gt;
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+ &lt;a href=&quot;#&quot; class=&quot;inheritanceTree&quot;&gt;show all&lt;/a&gt;
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+
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+ &lt;/dd&gt;
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+
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+ &lt;dt class=&quot;r2 last&quot;&gt;Defined in:&lt;/dt&gt;
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+ &lt;dd class=&quot;r2 last&quot;&gt;lib/rubyneat/evolver.rb&lt;/dd&gt;</pre>
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+
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+ <p>&lt;/dl&gt; &lt;div class=“clear”&gt;&lt;/div&gt;</p>
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+
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+ <p>&lt;h2&gt;Overview&lt;/h2&gt;&lt;div class=“docstring”&gt;</p>
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+
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+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
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+
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+ <p>&lt;h1 id=“label-Evolver+–+Basis+of+all+evolvers.”&gt;Evolver – Basis of
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+ all evolvers.&lt;/h1&gt;</p>
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+
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+ <p>&lt;p&gt;All evolvers shall derive from this basic evolver (or this one can
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+ be used as is). Here, we&amp;#39;ll have many different evolutionary
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+ operators that will perform operations on the various critters in the
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+ population.&lt;/p&gt;</p>
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+
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+ <pre>&lt;/div&gt;</pre>
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+
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+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
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+ <p>&lt;/div&gt;&lt;h2&gt;Defined Under Namespace&lt;/h2&gt; &lt;p
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+ class=“children”&gt;</p>
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+
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+ <pre>&lt;strong class=&quot;classes&quot;&gt;Classes:&lt;/strong&gt; &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;Evolver/CritterOp.html&quot; title=&quot;NEAT::Evolver::CritterOp (class)&quot;&gt;CritterOp&lt;/a&gt;&lt;/span&gt;</pre>
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+
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+ <p>&lt;/p&gt;</p>
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+
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+ <pre>&lt;h2&gt;Instance Attribute Summary &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;&lt;/h2&gt;
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+ &lt;ul class=&quot;summary&quot;&gt;
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+
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+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#npop-instance_method&quot; title=&quot;#npop (instance method)&quot;&gt;- (Object) &lt;strong&gt;npop&lt;/strong&gt; &lt;/a&gt;
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+
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+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;note title readonly&quot;&gt;readonly&lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
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+ <p>&lt;p&gt;Returns the value of attribute npop.&lt;/p&gt;
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+ &lt;/div&gt;&lt;/span&gt;</p>
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+
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+ <p>&lt;/li&gt;</p>
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+
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+ <pre>&lt;/ul&gt;
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+
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+ &lt;h3 class=&quot;inherited&quot;&gt;Attributes inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/h3&gt;
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+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#controller-instance_method&quot; title=&quot;NEAT::NeatOb#controller (method)&quot;&gt;#controller&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#name-instance_method&quot; title=&quot;NEAT::NeatOb#name (method)&quot;&gt;#name&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
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+
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+ &lt;h2&gt;
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+ Instance Method Summary
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+ &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;
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+ &lt;/h2&gt;
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+
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+ &lt;ul class=&quot;summary&quot;&gt;
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+
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+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#evolve-instance_method&quot; title=&quot;#evolve (instance method)&quot;&gt;- (Object) &lt;strong&gt;evolve&lt;/strong&gt;(population) &lt;/a&gt;
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+
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+ &lt;/span&gt;
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+
341
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
343
+ <p>&lt;p&gt;Here we clone the population and then evolve it on the basis of
344
+ fitness and novelty, etc.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
345
+
346
+ <p>&lt;/li&gt;</p>
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+
348
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
351
+ &lt;a href=&quot;#gen_initial_genes%21-instance_method&quot; title=&quot;#gen_initial_genes! (instance method)&quot;&gt;- (Object) &lt;strong&gt;gen_initial_genes!&lt;/strong&gt;(genotype) &lt;/a&gt;
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+
353
+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
356
+
357
+ <p>&lt;p&gt;Generate the initial genes for a given genotype.&lt;/p&gt;
358
+ &lt;/div&gt;&lt;/span&gt;</p>
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+
360
+ <p>&lt;/li&gt;</p>
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+
362
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
365
+ &lt;a href=&quot;#initialize-instance_method&quot; title=&quot;#initialize (instance method)&quot;&gt;- (Evolver) &lt;strong&gt;initialize&lt;/strong&gt;(c) &lt;/a&gt;
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+
367
+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;note title constructor&quot;&gt;constructor&lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
373
+ <p>&lt;p&gt;A new instance of Evolver.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
374
+
375
+ <p>&lt;/li&gt;</p>
376
+
377
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
380
+ &lt;a href=&quot;#mutate%21-instance_method&quot; title=&quot;#mutate! (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate!&lt;/strong&gt;(population) &lt;/a&gt;
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+
382
+ &lt;/span&gt;
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+
384
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
385
+
386
+ <p>&lt;p&gt;Here we mutate the population.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
387
+
388
+ <p>&lt;/li&gt;</p>
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+
390
+ <pre> &lt;/ul&gt;
391
+
392
+ &lt;h3 class=&quot;inherited&quot;&gt;Methods inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/h3&gt;
393
+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#log-instance_method&quot; title=&quot;NEAT::NeatOb#log (method)&quot;&gt;#log&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#log-class_method&quot; title=&quot;NEAT::NeatOb.log (method)&quot;&gt;log&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;NeatOb.html#to_s-instance_method&quot; title=&quot;NEAT::NeatOb#to_s (method)&quot;&gt;#to_s&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
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+
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+ &lt;div id=&quot;constructor_details&quot; class=&quot;method_details_list&quot;&gt;
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+ &lt;h2&gt;Constructor Details&lt;/h2&gt;
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+
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+ &lt;div class=&quot;method_details first&quot;&gt;
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+ &lt;h3 class=&quot;signature first&quot; id=&quot;initialize-instance_method&quot;&gt;
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+
401
+ - (&lt;tt&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;&quot; title=&quot;NEAT::Evolver (class)&quot;&gt;Evolver&lt;/a&gt;&lt;/span&gt;&lt;/tt&gt;) &lt;strong&gt;initialize&lt;/strong&gt;(c)</pre>
402
+
403
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
404
+
405
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
406
+
407
+ <p>&lt;p&gt;Returns a new instance of Evolver&lt;/p&gt;</p>
408
+
409
+ <pre>&lt;/div&gt;</pre>
410
+
411
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
413
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
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+
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+ <pre>&lt;tr&gt;
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+ &lt;td&gt;
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+ &lt;pre class=&quot;lines&quot;&gt;</pre>
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+
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+ <p>13 14 15 16&lt;/pre&gt;</p>
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+
421
+ <pre>&lt;/td&gt;
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+ &lt;td&gt;
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+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/evolver.rb&#39;, line 13&lt;/span&gt;</pre>
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+
425
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
426
+ identifier rubyid_initialize&#39;&gt;initialize&lt;/span&gt;&lt;span
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+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
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+ rubyid_c&#39;&gt;c&lt;/span&gt;&lt;span
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+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
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+
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+ <pre>&lt;span class=&#39;kw&#39;&gt;super&lt;/span&gt;
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+ &lt;span class=&#39;ivar&#39;&gt;@critter_op&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;CritterOp&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;self&lt;/span&gt;</pre>
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+
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+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
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+
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+ <pre> &lt;/td&gt;
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+ &lt;/tr&gt;</pre>
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+
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+ <p>&lt;/table&gt; &lt;/div&gt;</p>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre>&lt;div id=&quot;instance_attr_details&quot; class=&quot;attr_details&quot;&gt;
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+ &lt;h2&gt;Instance Attribute Details&lt;/h2&gt;
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+
446
+ &lt;span id=&quot;&quot;&gt;&lt;/span&gt;
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+ &lt;div class=&quot;method_details first&quot;&gt;
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+ &lt;h3 class=&quot;signature first&quot; id=&quot;npop-instance_method&quot;&gt;
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+
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+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;npop&lt;/strong&gt; &lt;span class=&quot;extras&quot;&gt;(readonly)&lt;/span&gt;</pre>
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+
452
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
453
+
454
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
455
+
456
+ <p>&lt;p&gt;Returns the value of attribute npop&lt;/p&gt;</p>
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+
458
+ <pre>&lt;/div&gt;</pre>
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+
460
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
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+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
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+
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+ <pre>&lt;tr&gt;
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+ &lt;td&gt;
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+ &lt;pre class=&quot;lines&quot;&gt;</pre>
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+
468
+ <p>11 12 13&lt;/pre&gt;</p>
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+
470
+ <pre>&lt;/td&gt;
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+ &lt;td&gt;
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+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/evolver.rb&#39;, line 11&lt;/span&gt;</pre>
473
+
474
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
475
+ identifier rubyid_npop&#39;&gt;npop&lt;/span&gt;</p>
476
+
477
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@npop&lt;/span&gt;</pre>
478
+
479
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
480
+
481
+ <pre> &lt;/td&gt;
482
+ &lt;/tr&gt;</pre>
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+
484
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
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+
486
+ <pre>&lt;/div&gt;
487
+
488
+ &lt;div id=&quot;instance_method_details&quot; class=&quot;method_details_list&quot;&gt;
489
+ &lt;h2&gt;Instance Method Details&lt;/h2&gt;
490
+
491
+ &lt;div class=&quot;method_details first&quot;&gt;
492
+ &lt;h3 class=&quot;signature first&quot; id=&quot;evolve-instance_method&quot;&gt;
493
+
494
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;evolve&lt;/strong&gt;(population)</pre>
495
+
496
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
497
+
498
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
499
+
500
+ <p>&lt;p&gt;Here we clone the population and then evolve it on the basis of
501
+ fitness and novelty, etc.&lt;/p&gt;</p>
502
+
503
+ <p>&lt;p&gt;Returns the newly-evolved population.&lt;/p&gt;</p>
504
+
505
+ <pre>&lt;/div&gt;</pre>
506
+
507
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
509
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
510
+
511
+ <pre>&lt;tr&gt;
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+ &lt;td&gt;
513
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
514
+
515
+ <p>53 54 55 56 57 58 59 60 61 62 63 64&lt;/pre&gt;</p>
516
+
517
+ <pre>&lt;/td&gt;
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+ &lt;td&gt;
519
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/evolver.rb&#39;, line 53&lt;/span&gt;</pre>
520
+
521
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
522
+ identifier rubyid_evolve&#39;&gt;evolve&lt;/span&gt;&lt;span
523
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
524
+ rubyid_population&#39;&gt;population&lt;/span&gt;&lt;span
525
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
526
+
527
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@npop&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_population&#39;&gt;population&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_dclone&#39;&gt;dclone&lt;/span&gt;
528
+
529
+ &lt;span class=&#39;comment&#39;&gt;# Population sorting and evaluation for breeding, mutations, etc.</pre>
530
+
531
+ <p>&lt;/span&gt; &lt;span class=&#39;id identifier
532
+ rubyid_prepare_speciation!&#39;&gt;prepare_speciation!&lt;/span&gt;</p>
533
+
534
+ <pre>&lt;span class=&#39;id identifier rubyid_prepare_fitness!&#39;&gt;prepare_fitness!&lt;/span&gt;
535
+ &lt;span class=&#39;id identifier rubyid_prepare_novelty!&#39;&gt;prepare_novelty!&lt;/span&gt;
536
+
537
+ &lt;span class=&#39;id identifier rubyid_mate!&#39;&gt;mate!&lt;/span&gt;
538
+
539
+ &lt;span class=&#39;kw&#39;&gt;return&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@npop&lt;/span&gt;</pre>
540
+
541
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
542
+
543
+ <pre> &lt;/td&gt;
544
+ &lt;/tr&gt;</pre>
545
+
546
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
547
+
548
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
549
+ &lt;h3 class=&quot;signature &quot; id=&quot;gen_initial_genes!-instance_method&quot;&gt;
550
+
551
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;gen_initial_genes!&lt;/strong&gt;(genotype)</pre>
552
+
553
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
554
+
555
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
556
+
557
+ <p>&lt;p&gt;Generate the initial genes for a given genotype. We key genes off
558
+ their innovation numbers.&lt;/p&gt;</p>
559
+
560
+ <pre>&lt;/div&gt;</pre>
561
+
562
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
563
+
564
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
565
+
566
+ <pre>&lt;tr&gt;
567
+ &lt;td&gt;
568
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
569
+
570
+ <p>20 21 22 23 24 25 26 27 28&lt;/pre&gt;</p>
571
+
572
+ <pre>&lt;/td&gt;
573
+ &lt;td&gt;
574
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/evolver.rb&#39;, line 20&lt;/span&gt;</pre>
575
+
576
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
577
+ identifier
578
+ rubyid_gen_initial_genes!&#39;&gt;gen_initial_genes!&lt;/span&gt;&lt;span
579
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
580
+ rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span
581
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
582
+
583
+ <pre>&lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_genes&#39;&gt;genes&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;lbrace&#39;&gt;{&lt;/span&gt;&lt;span class=&#39;rbrace&#39;&gt;}&lt;/span&gt;
584
+ &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_neural_inputs&#39;&gt;neural_inputs&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_each&#39;&gt;each&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;do&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;|&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_s1&#39;&gt;s1&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_input&#39;&gt;input&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;|&lt;/span&gt;
585
+ &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_neural_outputs&#39;&gt;neural_outputs&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_each&#39;&gt;each&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;do&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;|&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_s2&#39;&gt;s2&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_output&#39;&gt;output&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;|&lt;/span&gt;
586
+ &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Critter&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;::&lt;/span&gt;&lt;span class=&#39;const&#39;&gt;Genotype&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;::&lt;/span&gt;&lt;span class=&#39;const&#39;&gt;Gene&lt;/span&gt;&lt;span class=&#39;lbracket&#39;&gt;[&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_input&#39;&gt;input&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_output&#39;&gt;output&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;NEAT&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;::&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_controller&#39;&gt;controller&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_gaussian&#39;&gt;gaussian&lt;/span&gt;&lt;span class=&#39;rbracket&#39;&gt;]&lt;/span&gt;
587
+ &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_genes&#39;&gt;genes&lt;/span&gt;&lt;span class=&#39;lbracket&#39;&gt;[&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_innovation&#39;&gt;innovation&lt;/span&gt;&lt;span class=&#39;rbracket&#39;&gt;]&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;
588
+ &lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;
589
+ &lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;</pre>
590
+
591
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
592
+
593
+ <pre> &lt;/td&gt;
594
+ &lt;/tr&gt;</pre>
595
+
596
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
597
+
598
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
599
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate!-instance_method&quot;&gt;
600
+
601
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate!&lt;/strong&gt;(population)</pre>
602
+
603
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
604
+
605
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
606
+
607
+ <p>&lt;p&gt;Here we mutate the population.&lt;/p&gt;</p>
608
+
609
+ <pre>&lt;/div&gt;</pre>
610
+
611
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
612
+
613
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
614
+
615
+ <pre>&lt;tr&gt;
616
+ &lt;td&gt;
617
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
618
+
619
+ <p>31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47&lt;/pre&gt;</p>
620
+
621
+ <pre>&lt;/td&gt;
622
+ &lt;td&gt;
623
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/evolver.rb&#39;, line 31&lt;/span&gt;</pre>
624
+
625
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
626
+ identifier rubyid_mutate!&#39;&gt;mutate!&lt;/span&gt;&lt;span
627
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
628
+ rubyid_population&#39;&gt;population&lt;/span&gt;&lt;span
629
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
630
+
631
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@npop&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_population&#39;&gt;population&lt;/span&gt;
632
+
633
+ &lt;span class=&#39;kw&#39;&gt;if&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@controller&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_parms&#39;&gt;parms&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_mate_only_prob&#39;&gt;mate_only_prob&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_nil?&#39;&gt;nil?&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;or&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_rand&#39;&gt;rand&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;&amp;gt;&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@controller&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_parms&#39;&gt;parms&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_mate_only_prob&#39;&gt;mate_only_prob&lt;/span&gt;
634
+ &lt;span class=&#39;id identifier rubyid_log&#39;&gt;log&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_debug&#39;&gt;debug&lt;/span&gt; &lt;span class=&#39;tstring&#39;&gt;&lt;span class=&#39;tstring_beg&#39;&gt;&amp;quot;&lt;/span&gt;&lt;span class=&#39;tstring_content&#39;&gt;[[[ Neuron and Gene Giggling!&lt;/span&gt;&lt;span class=&#39;tstring_end&#39;&gt;&amp;quot;&lt;/span&gt;&lt;/span&gt;
635
+ &lt;span class=&#39;id identifier rubyid_mutate_perturb_gene_weights!&#39;&gt;mutate_perturb_gene_weights!&lt;/span&gt;
636
+ &lt;span class=&#39;id identifier rubyid_mutate_change_gene_weights!&#39;&gt;mutate_change_gene_weights!&lt;/span&gt;
637
+ &lt;span class=&#39;id identifier rubyid_mutate_add_neurons!&#39;&gt;mutate_add_neurons!&lt;/span&gt;
638
+ &lt;span class=&#39;id identifier rubyid_mutate_change_neurons!&#39;&gt;mutate_change_neurons!&lt;/span&gt;
639
+ &lt;span class=&#39;id identifier rubyid_mutate_add_genes!&#39;&gt;mutate_add_genes!&lt;/span&gt;
640
+ &lt;span class=&#39;id identifier rubyid_mutate_disable_genes!&#39;&gt;mutate_disable_genes!&lt;/span&gt;
641
+ &lt;span class=&#39;id identifier rubyid_mutate_reenable_genes!&#39;&gt;mutate_reenable_genes!&lt;/span&gt;
642
+ &lt;span class=&#39;id identifier rubyid_log&#39;&gt;log&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_debug&#39;&gt;debug&lt;/span&gt; &lt;span class=&#39;tstring&#39;&gt;&lt;span class=&#39;tstring_beg&#39;&gt;&amp;quot;&lt;/span&gt;&lt;span class=&#39;tstring_content&#39;&gt;]]] End Neuron and Gene Giggling!\n&lt;/span&gt;&lt;span class=&#39;tstring_end&#39;&gt;&amp;quot;&lt;/span&gt;&lt;/span&gt;
643
+ &lt;span class=&#39;kw&#39;&gt;else&lt;/span&gt;
644
+ &lt;span class=&#39;id identifier rubyid_log&#39;&gt;log&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_debug&#39;&gt;debug&lt;/span&gt; &lt;span class=&#39;tstring&#39;&gt;&lt;span class=&#39;tstring_beg&#39;&gt;&amp;quot;&lt;/span&gt;&lt;span class=&#39;tstring_content&#39;&gt;*** Mating only!&lt;/span&gt;&lt;span class=&#39;tstring_end&#39;&gt;&amp;quot;&lt;/span&gt;&lt;/span&gt;
645
+ &lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;</pre>
646
+
647
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
648
+
649
+ <pre> &lt;/td&gt;
650
+ &lt;/tr&gt;</pre>
651
+
652
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
653
+
654
+ <pre>&lt;/div&gt;</pre>
655
+
656
+ <p>&lt;/div&gt;</p>
657
+
658
+ <pre> &lt;div id=&quot;footer&quot;&gt;
659
+ Generated on Sun Mar 16 16:36:51 2014 by
660
+ &lt;a href=&quot;http://yardoc.org&quot; title=&quot;Yay! A Ruby Documentation Tool&quot; target=&quot;_parent&quot;&gt;yard&lt;/a&gt;
661
+ 0.8.7.3 (ruby-2.1.1).</pre>
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+
663
+ <p>&lt;/div&gt;</p>
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+
665
+ <pre>&lt;/body&gt;</pre>
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+
667
+ <p>&lt;/html&gt;</p>
668
+ </main>
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+
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+
671
+
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+ <footer id="validator-badges" role="contentinfo">
673
+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+