rubyneat 0.3.5.alpha.2

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Files changed (261) hide show
  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
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  24. data/Gemfile +32 -0
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  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
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  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
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  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
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  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
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  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
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  67. data/doc/css/style.css +339 -0
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  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
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  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
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  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
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  125. data/rdoc/Guardfile.html +198 -0
  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
  145. data/rdoc/NEAT/Evaluator.html +256 -0
  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
  147. data/rdoc/NEAT/Evolver.html +891 -0
  148. data/rdoc/NEAT/Expressor.html +402 -0
  149. data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
  150. data/rdoc/NEAT/Graph/GraphException.html +105 -0
  151. data/rdoc/NEAT/Graph.html +263 -0
  152. data/rdoc/NEAT/NeatException.html +105 -0
  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
  155. data/rdoc/NEAT/Operator.html +109 -0
  156. data/rdoc/NEAT/Population.html +935 -0
  157. data/rdoc/NEAT/Trait.html +117 -0
  158. data/rdoc/NEAT.html +422 -0
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  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
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  165. data/rdoc/SDL/Event2.html +98 -0
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  169. data/rdoc/doc/ControllerPoint_html.html +299 -0
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  173. data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
  181. data/rdoc/doc/NEAT/Controller_html.html +2212 -0
  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
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  185. data/rdoc/doc/NEAT/Critter_html.html +1037 -0
  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
  187. data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
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  194. data/rdoc/doc/NEAT/NeatException_html.html +299 -0
  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
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  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
@@ -0,0 +1,162 @@
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>class NEAT::BasicNeuronTypes::CosineNeuron - rubyneat 0.3.4</title>
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+
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../";
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+ <script src="../../js/jquery.js"></script>
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+ <script src="../../js/navigation.js"></script>
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+ <script src="../../js/search_index.js"></script>
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+ <script src="../../js/search.js"></script>
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+ <script src="../../js/searcher.js"></script>
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+ <script src="../../js/darkfish.js"></script>
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+ <body id="top" role="document" class="class">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../index.html" rel="home">Home</a>
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+ </h2>
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+ <div id="table-of-contents-navigation">
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+ <a href="../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ </div>
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+
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+ <div id="class-metadata">
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+
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+ <div id="parent-class-section" class="nav-section">
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+ <h3>Parent</h3>
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+
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+
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+ <p class="link"><a href="../Neuron.html">NEAT::Neuron</a>
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+
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+ </div>
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+
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+ <li ><a href="#method-i-express">#express</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::BasicNeuronTypes::CosineNeuron">
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+ <h1 id="class-NEAT::BasicNeuronTypes::CosineNeuron" class="class">
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+ class NEAT::BasicNeuronTypes::CosineNeuron
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+ </h1>
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+
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+ <section class="description">
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+
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+ <p>Cosine function (CPPN) – adjusted to have its +1 and -1 near <a
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+ href="TanhNeuron.html">TanhNeuron</a></p>
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+
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+ </section>
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+ <section id="5Buntitled-5D" class="documentation-section">
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+ <section id="public-instance-5Buntitled-5D-method-details" class="method-section">
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+ <header>
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+ <h3>Public Instance Methods</h3>
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+ </header>
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+
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+ <div id="method-i-express" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">express</span><span
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+ class="method-args">(instance)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+ <div class="method-description">
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+ <p>create a function on the instance with our name that sums all inputs and
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+ produce a sigmoid output (using tanh)</p>
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+ <div class="method-source-code" id="express-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/neuron.rb, line 144</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">express</span>(<span class="ruby-identifier">instance</span>)
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+ <span class="ruby-identifier">instance</span>.<span class="ruby-identifier">define_singleton_method</span>(<span class="ruby-ivar">@name</span>) {<span class="ruby-operator">|</span><span class="ruby-operator">*</span><span class="ruby-identifier">inputs</span><span class="ruby-operator">|</span>
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+ <span class="ruby-identifier">cos</span>(<span class="ruby-value">1.6</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">inputs</span>.<span class="ruby-identifier">reduce</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">p</span>, <span class="ruby-identifier">q</span><span class="ruby-operator">|</span> <span class="ruby-identifier">p</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">q</span>})
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+ }
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+ </div>
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+ </section>
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+ </section>
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+ </main>
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+ <footer id="validator-badges" role="contentinfo">
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+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+ <title>class NEAT::BasicNeuronTypes::InputNeuron - rubyneat 0.3.4</title>
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+
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+ <h3>Parent</h3>
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+ <p class="link"><a href="../Neuron.html">NEAT::Neuron</a>
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+
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+ </div>
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+
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+
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+ <li ><a href="#method-c-input-3F">::input?</a>
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+
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+ <li ><a href="#method-i-express">#express</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::BasicNeuronTypes::InputNeuron">
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+ <h1 id="class-NEAT::BasicNeuronTypes::InputNeuron" class="class">
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+ class NEAT::BasicNeuronTypes::InputNeuron
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+ </h1>
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+
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+ <section class="description">
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+
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+ <h1 id="class-NEAT::BasicNeuronTypes::InputNeuron-label-Special+class+of+Neuron+that+takes+input+from+the+%22real+world%22">Special class of <a href="../Neuron.html">Neuron</a> that takes input from the “real world”<span><a href="#class-NEAT::BasicNeuronTypes::InputNeuron-label-Special+class+of+Neuron+that+takes+input+from+the+%22real+world%22">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <pre>Name of this neuron equates to the parameter name of the input.
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+
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+ All inputs are handled with this neuron. This type of
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+ neuron only has one input -- from the outside world.</pre>
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+
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+ </section>
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+
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+
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+
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+
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+ <section id="5Buntitled-5D" class="documentation-section">
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+
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+
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+
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+
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+
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+
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+
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+
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+ <section id="public-class-5Buntitled-5D-method-details" class="method-section">
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+ <header>
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+ <h3>Public Class Methods</h3>
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+ </header>
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+
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+
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+ <div id="method-c-input-3F" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">input?</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+
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+ <div class="method-source-code" id="input-3F-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/neuron.rb, line 76</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">input?</span> ; <span class="ruby-keyword">true</span> ; <span class="ruby-keyword">end</span></pre>
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+ </div>
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+ </div>
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+ </div>
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+
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+
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+ </section>
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+
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+ <section id="public-instance-5Buntitled-5D-method-details" class="method-section">
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+ <header>
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+ <h3>Public Instance Methods</h3>
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+ </header>
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+
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+
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+ <div id="method-i-express" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">express</span><span
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+ class="method-args">(instance)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Takes a single input and passes it as is.</p>
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+
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+
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+
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+
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+ <div class="method-source-code" id="express-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/neuron.rb, line 79</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">express</span>(<span class="ruby-identifier">instance</span>)
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+ <span class="ruby-identifier">instance</span>.<span class="ruby-identifier">define_singleton_method</span>(<span class="ruby-ivar">@name</span>) {<span class="ruby-operator">|</span><span class="ruby-identifier">input</span><span class="ruby-operator">|</span>
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+ <span class="ruby-identifier">input</span>
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+ }
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+ </div>
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ <title>class NEAT::BasicNeuronTypes::SigmoidNeuron - rubyneat 0.3.4</title>
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+ <div id="parent-class-section" class="nav-section">
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+ <h3>Parent</h3>
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+ <p class="link"><a href="../Neuron.html">NEAT::Neuron</a>
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+
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+ </div>
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+
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+ <li ><a href="#method-i-express">#express</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::BasicNeuronTypes::SigmoidNeuron">
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+ <h1 id="class-NEAT::BasicNeuronTypes::SigmoidNeuron" class="class">
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+ class NEAT::BasicNeuronTypes::SigmoidNeuron
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+ </h1>
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+
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+ <section class="description">
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+
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+ <p>The most commonly-used neuron for the hidden and output layers. We use the
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+ Logistic Function for the Sigmoid.</p>
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+
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+ </section>
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+
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+
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+
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+
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+ <section id="5Buntitled-5D" class="documentation-section">
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+
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+
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+
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+
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+
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+
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+
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+
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+
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+ <section id="public-instance-5Buntitled-5D-method-details" class="method-section">
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+ <header>
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+ <h3>Public Instance Methods</h3>
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+ </header>
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+
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+
115
+ <div id="method-i-express" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">express</span><span
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+ class="method-args">(instance)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>create a function on the instance with our name that sums all inputs and
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+ produce a sigmoid output (using tanh)</p>
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+
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+
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+
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+
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+ <div class="method-source-code" id="express-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/neuron.rb, line 111</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">express</span>(<span class="ruby-identifier">instance</span>)
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+ <span class="ruby-identifier">instance</span>.<span class="ruby-identifier">define_singleton_method</span>(<span class="ruby-ivar">@name</span>) {<span class="ruby-operator">|</span><span class="ruby-operator">*</span><span class="ruby-identifier">inputs</span><span class="ruby-operator">|</span>
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+ <span class="ruby-value">1.0</span> <span class="ruby-operator">/</span> (<span class="ruby-value">1.0</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">exp</span>(<span class="ruby-value">-4.9</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">inputs</span>.<span class="ruby-identifier">reduce</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">p</span>, <span class="ruby-identifier">q</span><span class="ruby-operator">|</span> <span class="ruby-identifier">p</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">q</span>}))
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+ }
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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