rubyneat 0.3.5.alpha.2

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Files changed (261) hide show
  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
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  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
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  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
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  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
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  124. data/rdoc/GraphTest.html +210 -0
  125. data/rdoc/Guardfile.html +198 -0
  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
  145. data/rdoc/NEAT/Evaluator.html +256 -0
  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
  147. data/rdoc/NEAT/Evolver.html +891 -0
  148. data/rdoc/NEAT/Expressor.html +402 -0
  149. data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
  150. data/rdoc/NEAT/Graph/GraphException.html +105 -0
  151. data/rdoc/NEAT/Graph.html +263 -0
  152. data/rdoc/NEAT/NeatException.html +105 -0
  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
  155. data/rdoc/NEAT/Operator.html +109 -0
  156. data/rdoc/NEAT/Population.html +935 -0
  157. data/rdoc/NEAT/Trait.html +117 -0
  158. data/rdoc/NEAT.html +422 -0
  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
  167. data/rdoc/Vector.html +195 -0
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  169. data/rdoc/doc/ControllerPoint_html.html +299 -0
  170. data/rdoc/doc/CuteA_html.html +438 -0
  171. data/rdoc/doc/CuteB_html.html +436 -0
  172. data/rdoc/doc/DSL_html.html +992 -0
  173. data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
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  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
  183. data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
  184. data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
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  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
  187. data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
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  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
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data/doc/NEAT/Expressor.html ADDED
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+ <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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+ <title>
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+ Class: NEAT::Expressor
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+
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+ &mdash; Documentation by YARD 0.8.7.4
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+ </title>
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+ <link rel="stylesheet" href="../css/style.css" type="text/css" charset="utf-8" />
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+ <link rel="stylesheet" href="../css/common.css" type="text/css" charset="utf-8" />
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+ <script type="text/javascript" charset="utf-8">
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+ hasFrames = window.top.frames.main ? true : false;
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+ relpath = '../';
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+ framesUrl = "../frames.html#!NEAT/Expressor.html";
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+ <script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
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+ <script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
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+ </head>
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+ <body>
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+ <div id="header">
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+ <div id="menu">
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+ <a href="../_index.html">Index (E)</a> &raquo;
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+ <span class='title'><span class='object_link'><a href="../NEAT.html" title="NEAT (module)">NEAT</a></span></span>
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+ &raquo;
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+ <span class="title">Expressor</span>
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+ <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
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+ </div>
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+ <div id="search">
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+ <a class="full_list_link" id="class_list_link"
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+ href="../class_list.html">
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+ Class List
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+ </a>
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+ <a class="full_list_link" id="method_list_link"
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+ href="../method_list.html">
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+ Method List
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+ </a>
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+ <a class="full_list_link" id="file_list_link"
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+ href="../file_list.html">
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+ File List
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+ </a>
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+ </div>
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+ <div class="clear"></div>
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+ </div>
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+
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+ <iframe id="search_frame"></iframe>
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+
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+ <div id="content"><h1>Class: NEAT::Expressor
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+
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+ </h1>
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+
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+ <dl class="box">
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+
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+ <dt class="r1">Inherits:</dt>
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+ <dd class="r1">
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+ <span class="inheritName"><span class='object_link'><a href="Operator.html" title="NEAT::Operator (class)">Operator</a></span></span>
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+
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+ <ul class="fullTree">
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+ <li>Object</li>
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+
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+ <li class="next"><span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></li>
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+
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+ <li class="next"><span class='object_link'><a href="Operator.html" title="NEAT::Operator (class)">Operator</a></span></li>
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+ <li class="next">NEAT::Expressor</li>
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+
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+ </ul>
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+ <a href="#" class="inheritanceTree">show all</a>
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+
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+ </dd>
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+ <dt class="r2 last">Defined in:</dt>
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+ <dd class="r2 last">lib/rubyneat/expressor.rb</dd>
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+
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+ </dl>
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+ <div class="clear"></div>
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+ <h2>Overview</h2><div class="docstring">
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+ <div class="discussion">
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+ <h1 id="label-Basis+of+all+expressors.+">Basis of all expressors. </h1>
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+ <p>Expressor object turn genotypes into phenotypes.</p>
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+ </div>
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+ </div>
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+ <div class="tags">
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+ </div>
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+ <h2>Instance Attribute Summary</h2>
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+ <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
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+ <h2>
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+ Instance Method Summary
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+ <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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+ </h2>
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+ <ul class="summary">
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+ <li class="public ">
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+ <span class="summary_signature">
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+ <a href="#express%21-instance_method" title="#express! (instance method)">- (Object) <strong>express!</strong>(critter) </a>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>Take the genotype of the critter and create a phenotype from the genotype.</p>
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+ </div></span>
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+ <a href="#initialize-instance_method" title="#initialize (instance method)">- (Expressor) <strong>initialize</strong>(c) </a>
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+ </span>
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+ <span class="summary_desc"><div class='inline'>
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+ <p>A new instance of Expressor.</p>
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+ <h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
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+ <p class="inherited"><span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
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+
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+ <div id="constructor_details" class="method_details_list">
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+ <h2>Constructor Details</h2>
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+
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+ <div class="method_details first">
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+ <h3 class="signature first" id="initialize-instance_method">
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+
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+ - (<tt><span class='object_link'><a href="" title="NEAT::Expressor (class)">Expressor</a></span></tt>) <strong>initialize</strong>(c)
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+
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+
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+ <p>Returns a new instance of Expressor</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+
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+ 8
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+ 9
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+ 10</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/rubyneat/expressor.rb', line 8</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_c'>c</span><span class='rparen'>)</span>
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+ <span class='kw'>super</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+
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+ <div id="instance_method_details" class="method_details_list">
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+ <h2>Instance Method Details</h2>
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+
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+
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+ <div class="method_details first">
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+ <h3 class="signature first" id="express!-instance_method">
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+
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+ - (<tt>Object</tt>) <strong>express!</strong>(critter)
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+
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+
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+
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+
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+
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+ </h3><div class="docstring">
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+ <div class="discussion">
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+
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+ <p>Take the genotype of the critter and create a phenotype from the genotype.</p>
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+
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+ <p>In the phenotype, it creates a function called stimulate(), which is called
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+ with the input parameters and returns a response in the form of a response
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+ hash (which corresponds directly to the output neurons).</p>
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+
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+ <p>This implementation assumes an acyclic graph (feed forward) and cannot
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+ handle cycles at all. Later we may fix this or create a type of Expressor
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+ that can.</p>
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+
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+
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+ </div>
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+ </div>
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+ <div class="tags">
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+
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+
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+ </div><table class="source_code">
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+ <tr>
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+ <td>
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+ <pre class="lines">
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+
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+
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+ 23
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+ 24
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+ 25
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+ 26
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+ 27
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+ 28</pre>
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+ </td>
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+ <td>
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+ <pre class="code"><span class="info file"># File 'lib/rubyneat/expressor.rb', line 23</span>
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+
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+ <span class='kw'>def</span> <span class='id identifier rubyid_express!'>express!</span><span class='lparen'>(</span><span class='id identifier rubyid_critter'>critter</span><span class='rparen'>)</span>
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+ <span class='id identifier rubyid_critter'>critter</span><span class='period'>.</span><span class='id identifier rubyid_ready_for_expression!'>ready_for_expression!</span>
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+ <span class='id identifier rubyid_express_neurons!'>express_neurons!</span> <span class='id identifier rubyid_critter'>critter</span>
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+ <span class='id identifier rubyid_express_genes!'>express_genes!</span> <span class='id identifier rubyid_critter'>critter</span>
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+ <span class='id identifier rubyid_express_expression!'>express_expression!</span> <span class='id identifier rubyid_critter'>critter</span>
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+ <span class='kw'>end</span></pre>
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+ </td>
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+ </tr>
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+ </table>
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+ </div>
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+
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+ </div>
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+
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+ </div>
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+
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+ <div id="footer">
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+ Generated on Sun Apr 13 15:54:03 2014 by
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+ <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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+ 0.8.7.4 (ruby-2.1.1).
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+ </div>
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+
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+ </body>
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+ </html>