rubyneat 0.3.5.alpha.2
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<h1 id="class-NEAT::Critter::Genotype-label-Genotype+part+of+the+Critter"><a href="Genotype.html">Genotype</a> part of the <a href="../Critter.html">Critter</a><span><a href="#class-NEAT::Critter::Genotype-label-Genotype+part+of+the+Critter">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>List of connections, basically.
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Also, basic phentypic expression (which may be overriden by
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the expressor)</pre>
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<h1 id="class-NEAT::Critter::Genotype-label-Notes">Notes<span><a href="#class-NEAT::Critter::Genotype-label-Notes">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre>Currently, all lists of neurons and genes are Hashes. The
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neurons are indexed by their own names, and the genes
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are indexed by their innovation numbers.</pre>
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<section id="5Buntitled-5D" class="documentation-section">
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<header>
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<h3>Attributes</h3>
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<p><a href="../Critter.html">Critter</a> to which we belong</p>
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<p>This will be set to true if there are dangling neurons.</p>
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<p>This will be set to true if there are dangling neurons.</p>
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<p>Genes keyed by innovation numbers</p>
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<p>Map neurons to the genes that marks them as output { oneu_name => [
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gene_1, gene_2,… gene_n], …} Just take the in_neuron name and the weight to
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do the call to that neuron function with the appropriate weights</p>
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<span class="method-name">neural_inputs</span><span
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<p>Instantiations of neural inputs and outputs</p>
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<p>Instantiations of neural inputs and outputs</p>
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<div id="attribute-i-neurons" class="method-detail">
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<span class="method-name">neurons</span><span
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class="attribute-access-type">[RW]</span>
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</div>
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<div class="method-description">
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<p>List of neurons hashed by name</p>
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</div>
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</div>
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</section>
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<section id="public-class-5Buntitled-5D-method-details" class="method-section">
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<header>
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<h3>Public Class Methods</h3>
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</header>
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<span class="method-name">new</span><span
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class="method-args">(critter, mating = false, &block)</span>
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<span class="method-click-advice">click to toggle source</span>
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<div class="method-calls-super">
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Calls superclass method
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</div>
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<div class="method-source-code" id="new-source">
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 88</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">critter</span>, <span class="ruby-identifier">mating</span> = <span class="ruby-keyword">false</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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|
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<span class="ruby-keyword">super</span> <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">controller</span>
|
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<span class="ruby-ivar">@critter</span> = <span class="ruby-identifier">critter</span>
|
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|
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<span class="ruby-comment"># Initialize basic structures</span>
|
|
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|
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<span class="ruby-ivar">@genes</span> = <span class="ruby-keyword">nil</span>
|
|
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|
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<span class="ruby-ivar">@neural_inputs</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@critter</span>.<span class="ruby-identifier">population</span>.<span class="ruby-identifier">input_neurons</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">ineu</span><span class="ruby-operator">|</span>
|
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|
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[<span class="ruby-identifier">sym</span>, <span class="ruby-identifier">ineu</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@controller</span>, <span class="ruby-identifier">sym</span>)]
|
|
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|
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}]
|
|
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|
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|
|
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|
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<span class="ruby-ivar">@neural_outputs</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@critter</span>.<span class="ruby-identifier">population</span>.<span class="ruby-identifier">output_neurons</span>.<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">ineu</span><span class="ruby-operator">|</span>
|
|
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|
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[<span class="ruby-identifier">sym</span>, <span class="ruby-identifier">ineu</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@controller</span>, <span class="ruby-identifier">sym</span>)]
|
|
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|
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}]
|
|
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|
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<span class="ruby-ivar">@neurons</span> = <span class="ruby-ivar">@neural_inputs</span>.<span class="ruby-identifier">clone</span> <span class="ruby-comment"># this must be a shallow clone!</span>
|
|
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|
+
<span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">merge!</span> <span class="ruby-ivar">@neural_outputs</span>
|
|
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|
+
|
|
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|
+
<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evolver</span>.<span class="ruby-identifier">gen_initial_genes!</span>(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">mating</span>
|
|
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|
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<span class="ruby-identifier">block</span>.(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">block</span>.<span class="ruby-identifier">nil?</span>
|
|
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|
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<span class="ruby-keyword">end</span></pre>
|
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|
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</section>
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<section id="public-instance-5Buntitled-5D-method-details" class="method-section">
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<header>
|
|
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|
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<h3>Public Instance Methods</h3>
|
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|
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</header>
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<div id="method-i-add_genes" class="method-detail ">
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|
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<div class="method-heading">
|
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|
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<span class="method-name">add_genes</span><span
|
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|
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class="method-args">(*genes)</span>
|
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|
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</div>
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|
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|
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<div class="method-description">
|
|
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|
+
|
|
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|
+
<p>Genes added here MUST correspond to pre-existing neurons. Be sure to do <a
|
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|
+
href="Genotype.html#method-i-add_neurons">#add_neurons</a> first!!!!</p>
|
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|
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|
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<div class="method-source-code" id="add_genes-source">
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|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 163</span>
|
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">add_genes</span>(<span class="ruby-operator">*</span><span class="ruby-identifier">genes</span>)
|
|
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|
+
<span class="ruby-identifier">genes</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
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|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">NeatException</span>.<span class="ruby-identifier">new</span> <span class="ruby-node">"Neuron #{gene.in_neuron} missing"</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>
|
|
354
|
+
<span class="ruby-identifier">raise</span> <span class="ruby-constant">NeatException</span>.<span class="ruby-identifier">new</span> <span class="ruby-node">"Neuron #{gene.out_neuron} missing"</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>
|
|
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|
+
<span class="ruby-ivar">@genes</span>[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">innovation</span>] = <span class="ruby-identifier">gene</span>
|
|
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|
+
<span class="ruby-keyword">end</span>
|
|
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|
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<span class="ruby-keyword">end</span></pre>
|
|
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</div>
|
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|
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|
|
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|
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</div>
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</div>
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|
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<div id="method-i-add_neurons" class="method-detail ">
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|
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<div class="method-heading">
|
|
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|
+
<span class="method-name">add_neurons</span><span
|
|
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|
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class="method-args">(*neus)</span>
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<span class="method-click-advice">click to toggle source</span>
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</div>
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|
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|
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<div class="method-description">
|
|
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|
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|
|
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|
+
<p>Add new neurons to the fold</p>
|
|
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|
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|
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|
+
|
|
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|
+
|
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|
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|
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|
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<div class="method-source-code" id="add_neurons-source">
|
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 155</span>
|
|
388
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">add_neurons</span>(<span class="ruby-operator">*</span><span class="ruby-identifier">neus</span>)
|
|
389
|
+
<span class="ruby-identifier">neus</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">neu</span><span class="ruby-operator">|</span>
|
|
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|
+
<span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>] = <span class="ruby-identifier">neu</span>
|
|
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|
+
<span class="ruby-keyword">end</span>
|
|
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|
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<span class="ruby-keyword">end</span></pre>
|
|
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</div>
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</div>
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</div>
|
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|
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<div id="method-i-dump_s" class="method-detail ">
|
|
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|
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|
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|
+
<div class="method-heading">
|
|
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|
+
<span class="method-name">dump_s</span><span
|
|
407
|
+
class="method-args">()</span>
|
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|
+
|
|
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|
+
<span class="method-click-advice">click to toggle source</span>
|
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|
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</div>
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<div class="method-description">
|
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<div class="method-source-code" id="dump_s-source">
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 218</span>
|
|
423
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">dump_s</span>
|
|
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|
+
<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">"\ngenes:\n"</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
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|
+
<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">to_s</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">"\n"</span>) <span class="ruby-operator">+</span> <span class="ruby-string">"\nneurons:\n"</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">k</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span>
|
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+
<span class="ruby-identifier">neu</span>.<span class="ruby-identifier">to_s</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">"\n"</span>)
|
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+
<span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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<div id="method-i-fitness_cost" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">fitness_cost</span><span
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+
class="method-args">()</span>
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+
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<span class="method-click-advice">click to toggle source</span>
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+
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+
</div>
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<div class="method-description">
|
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450
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+
|
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|
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<p>Calculate the cost of this genotype.</p>
|
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+
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+
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+
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+
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<div class="method-source-code" id="fitness_cost-source">
|
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|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 213</span>
|
|
458
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">fitness_cost</span>
|
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|
+
<span class="ruby-identifier">p</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>
|
|
460
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">fitness_cost_per_neuron</span> <span class="ruby-operator">*</span> <span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">p</span>.<span class="ruby-identifier">fitness_cost_per_gene</span> <span class="ruby-operator">*</span> <span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">size</span>
|
|
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|
+
<span class="ruby-keyword">end</span></pre>
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</div>
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</div>
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</div>
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+
<div id="method-i-forget-21" class="method-detail ">
|
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+
|
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474
|
+
<div class="method-heading">
|
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475
|
+
<span class="method-name">forget!</span><span
|
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|
+
class="method-args">()</span>
|
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+
|
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|
+
<span class="method-click-advice">click to toggle source</span>
|
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+
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+
</div>
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+
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+
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<div class="method-description">
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484
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+
|
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485
|
+
<p>Make the neurons forget their wiring.</p>
|
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+
|
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+
|
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+
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+
|
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+
<div class="method-source-code" id="forget-21-source">
|
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|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 134</span>
|
|
492
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">forget!</span>
|
|
493
|
+
<span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">name</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">clear_graph</span> }
|
|
494
|
+
<span class="ruby-ivar">@neural_gene_map</span> = <span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">h</span>, <span class="ruby-identifier">k</span><span class="ruby-operator">|</span> <span class="ruby-identifier">h</span>[<span class="ruby-identifier">k</span>] = [] }
|
|
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|
+
<span class="ruby-keyword">end</span></pre>
|
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|
+
</div>
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|
+
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|
+
</div>
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+
|
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|
+
</div>
|
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|
+
|
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|
+
|
|
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|
+
<div id="method-i-innervate-21" class="method-detail ">
|
|
507
|
+
|
|
508
|
+
<div class="method-heading">
|
|
509
|
+
<span class="method-name">innervate!</span><span
|
|
510
|
+
class="method-args">(*hneus)</span>
|
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511
|
+
|
|
512
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
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|
+
|
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514
|
+
</div>
|
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+
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|
+
<div class="method-description">
|
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518
|
+
|
|
519
|
+
<p>We take the neural hashes (presumably from other neurons), and innervate
|
|
520
|
+
them. We do this in distinctions based on the neuron's names. FIXME We
|
|
521
|
+
need to randomly select a neuron in the case of clashes. @param [Hash]
|
|
522
|
+
hneus – hashes of neurons to innervate</p>
|
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|
+
|
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524
|
+
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525
|
+
|
|
526
|
+
|
|
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|
+
<div class="method-source-code" id="innervate-21-source">
|
|
528
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 175</span>
|
|
529
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">innervate!</span>(<span class="ruby-operator">*</span><span class="ruby-identifier">hneus</span>)
|
|
530
|
+
<span class="ruby-identifier">hneus</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">neus</span><span class="ruby-operator">|</span>
|
|
531
|
+
<span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">merge!</span> <span class="ruby-identifier">neus</span>.<span class="ruby-identifier">dclone</span>
|
|
532
|
+
<span class="ruby-keyword">end</span>
|
|
533
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
+
</div>
|
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|
+
|
|
536
|
+
</div>
|
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|
+
|
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|
+
|
|
539
|
+
|
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540
|
+
|
|
541
|
+
</div>
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
<div id="method-i-neucleate" class="method-detail ">
|
|
545
|
+
|
|
546
|
+
<div class="method-heading">
|
|
547
|
+
<span class="method-name">neucleate</span><span
|
|
548
|
+
class="method-args">(clean: true, &block)</span>
|
|
549
|
+
|
|
550
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
551
|
+
|
|
552
|
+
</div>
|
|
553
|
+
|
|
554
|
+
|
|
555
|
+
<div class="method-description">
|
|
556
|
+
|
|
557
|
+
<p>We add genes given here to the genome. An array of genes is returned from
|
|
558
|
+
the block and we simply add them in. @param [boolean] clean @param [Proc]
|
|
559
|
+
block</p>
|
|
560
|
+
|
|
561
|
+
|
|
562
|
+
|
|
563
|
+
|
|
564
|
+
<div class="method-source-code" id="neucleate-source">
|
|
565
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 113</span>
|
|
566
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">neucleate</span>(<span class="ruby-identifier">clean</span><span class="ruby-operator">:</span> <span class="ruby-keyword">true</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
567
|
+
<span class="ruby-identifier">genes</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-identifier">block</span>.(<span class="ruby-keyword">self</span>).<span class="ruby-identifier">map</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">g</span><span class="ruby-operator">|</span>
|
|
568
|
+
<span class="ruby-identifier">g</span>.<span class="ruby-identifier">genotype</span> = <span class="ruby-keyword">self</span>
|
|
569
|
+
[<span class="ruby-identifier">g</span>.<span class="ruby-identifier">innovation</span>, <span class="ruby-identifier">g</span>] }]
|
|
570
|
+
<span class="ruby-keyword">if</span> <span class="ruby-identifier">clean</span>
|
|
571
|
+
<span class="ruby-ivar">@genes</span> = <span class="ruby-identifier">genes</span>
|
|
572
|
+
<span class="ruby-keyword">else</span>
|
|
573
|
+
<span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">merge!</span> <span class="ruby-identifier">genes</span>
|
|
574
|
+
<span class="ruby-keyword">end</span>
|
|
575
|
+
<span class="ruby-identifier">nuke_redundancies!</span>
|
|
576
|
+
<span class="ruby-keyword">end</span></pre>
|
|
577
|
+
</div>
|
|
578
|
+
|
|
579
|
+
</div>
|
|
580
|
+
|
|
581
|
+
|
|
582
|
+
|
|
583
|
+
|
|
584
|
+
</div>
|
|
585
|
+
|
|
586
|
+
|
|
587
|
+
<div id="method-i-nuke_redundancies-21" class="method-detail ">
|
|
588
|
+
|
|
589
|
+
<div class="method-heading">
|
|
590
|
+
<span class="method-name">nuke_redundancies!</span><span
|
|
591
|
+
class="method-args">()</span>
|
|
592
|
+
|
|
593
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
594
|
+
|
|
595
|
+
</div>
|
|
596
|
+
|
|
597
|
+
|
|
598
|
+
<div class="method-description">
|
|
599
|
+
|
|
600
|
+
<p>Remove any redundancies in the genome, any genes refering to the same two
|
|
601
|
+
neurons. Simply choose one and delete the rest. TODO: implement
|
|
602
|
+
nuke_redundancies!</p>
|
|
603
|
+
|
|
604
|
+
|
|
605
|
+
|
|
606
|
+
|
|
607
|
+
<div class="method-source-code" id="nuke_redundancies-21-source">
|
|
608
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 129</span>
|
|
609
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">nuke_redundancies!</span>
|
|
610
|
+
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">warn</span> <span class="ruby-string">'nuke_redundancies! NIY'</span>
|
|
611
|
+
<span class="ruby-keyword">end</span></pre>
|
|
612
|
+
</div>
|
|
613
|
+
|
|
614
|
+
</div>
|
|
615
|
+
|
|
616
|
+
|
|
617
|
+
|
|
618
|
+
|
|
619
|
+
</div>
|
|
620
|
+
|
|
621
|
+
|
|
622
|
+
<div id="method-i-prune-21" class="method-detail ">
|
|
623
|
+
|
|
624
|
+
<div class="method-heading">
|
|
625
|
+
<span class="method-name">prune!</span><span
|
|
626
|
+
class="method-args">()</span>
|
|
627
|
+
|
|
628
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
629
|
+
|
|
630
|
+
</div>
|
|
631
|
+
|
|
632
|
+
|
|
633
|
+
<div class="method-description">
|
|
634
|
+
|
|
635
|
+
<p>Go through the list of neurons and drop any neurons not referenced by the
|
|
636
|
+
genes.</p>
|
|
637
|
+
|
|
638
|
+
<p>Then go through the genes and drop any that are dangling (i.e. no matching
|
|
639
|
+
neurons)</p>
|
|
640
|
+
|
|
641
|
+
<p>Then make sure that @neural_inputs and @neural_outputs reference the actual
|
|
642
|
+
instance neurons in @neurons</p>
|
|
643
|
+
|
|
644
|
+
<p>TODO add this circularity check to prune!</p>
|
|
645
|
+
|
|
646
|
+
|
|
647
|
+
|
|
648
|
+
|
|
649
|
+
<div class="method-source-code" id="prune-21-source">
|
|
650
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 191</span>
|
|
651
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">prune!</span>
|
|
652
|
+
<span class="ruby-comment"># Take care of dangling neurons</span>
|
|
653
|
+
<span class="ruby-identifier">neunames</span> = <span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">g</span><span class="ruby-operator">|</span> [<span class="ruby-identifier">g</span>.<span class="ruby-identifier">in_neuron</span>, <span class="ruby-identifier">g</span>.<span class="ruby-identifier">out_neuron</span>]}.<span class="ruby-identifier">flatten</span>.<span class="ruby-identifier">to_set</span>
|
|
654
|
+
<span class="ruby-ivar">@neurons</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">reject</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span>
|
|
655
|
+
<span class="ruby-keyword">not</span> <span class="ruby-identifier">neunames</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>
|
|
656
|
+
<span class="ruby-keyword">end</span>.<span class="ruby-identifier">map</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span>
|
|
657
|
+
[<span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>, <span class="ruby-identifier">n</span>]
|
|
658
|
+
<span class="ruby-keyword">end</span>]
|
|
659
|
+
|
|
660
|
+
<span class="ruby-comment"># Take care of dangling genes</span>
|
|
661
|
+
<span class="ruby-ivar">@genes</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">reject</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
662
|
+
<span class="ruby-keyword">not</span> (<span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>) <span class="ruby-keyword">and</span> <span class="ruby-ivar">@neurons</span>.<span class="ruby-identifier">member?</span>(<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>))
|
|
663
|
+
<span class="ruby-keyword">end</span>.<span class="ruby-identifier">map</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
664
|
+
[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">name</span>, <span class="ruby-identifier">gene</span>]
|
|
665
|
+
<span class="ruby-keyword">end</span>]
|
|
666
|
+
|
|
667
|
+
<span class="ruby-comment"># Make sure @neural_inputs and @neural_outputs are consistent</span>
|
|
668
|
+
<span class="ruby-ivar">@neural_inputs</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@neural_inputs</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span> [<span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>, <span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>]]}]
|
|
669
|
+
<span class="ruby-ivar">@neural_outputs</span> = <span class="ruby-constant">Hash</span>[<span class="ruby-ivar">@neural_outputs</span>.<span class="ruby-identifier">values</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">n</span><span class="ruby-operator">|</span> [<span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>, <span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">n</span>.<span class="ruby-identifier">name</span>]]}]
|
|
670
|
+
<span class="ruby-keyword">end</span></pre>
|
|
671
|
+
</div>
|
|
672
|
+
|
|
673
|
+
</div>
|
|
674
|
+
|
|
675
|
+
|
|
676
|
+
|
|
677
|
+
|
|
678
|
+
</div>
|
|
679
|
+
|
|
680
|
+
|
|
681
|
+
<div id="method-i-wire-21" class="method-detail ">
|
|
682
|
+
|
|
683
|
+
<div class="method-heading">
|
|
684
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<span class="method-name">wire!</span><span
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class="method-args">()</span>
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687
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<p>Wire up the neurons based on the genes.</p>
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<div class="method-source-code" id="wire-21-source">
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 140</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">wire!</span>
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702
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<span class="ruby-identifier">forget!</span>
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703
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<span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">innov</span>, <span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
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<span class="ruby-keyword">if</span> <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">enabled?</span>
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705
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<span class="ruby-identifier">raise</span> <span class="ruby-constant">NeatException</span>.<span class="ruby-identifier">new</span> <span class="ruby-node">"Can't find #{gene.out_neuron}"</span> <span class="ruby-keyword">if</span> <span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>].<span class="ruby-identifier">nil?</span>
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706
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<span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>] <span class="ruby-operator"><<</span> <span class="ruby-ivar">@neurons</span>[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>]
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707
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+
<span class="ruby-ivar">@neural_gene_map</span>[<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">out_neuron</span>] <span class="ruby-operator"><<</span> <span class="ruby-identifier">gene</span> <span class="ruby-keyword">unless</span> <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>.<span class="ruby-identifier">nil?</span>
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708
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<span class="ruby-keyword">end</span>
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709
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<span class="ruby-keyword">end</span> <span class="ruby-keyword">unless</span> <span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">nil?</span>
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710
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<span class="ruby-keyword">if</span> <span class="ruby-ivar">@genes</span>.<span class="ruby-identifier">nil?</span>
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711
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<span class="ruby-identifier">$log</span>.<span class="ruby-identifier">error</span> <span class="ruby-string">'Genes Not Present'</span>
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712
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<span class="ruby-keyword">end</span>
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713
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<span class="ruby-keyword">end</span></pre>
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</main>
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<footer id="validator-badges" role="contentinfo">
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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