rubyneat 0.3.5.alpha.2
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<h2>Instance Attribute Summary <small>(<a href="#" class="summary_toggle">collapse</a>)</small></h2>
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<a href="#compare_func-instance_method" title="#compare_func (instance method)">- (Object) <strong>compare_func</strong> </a>
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<span class="summary_desc"><div class='inline'>
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<p>Compare function for fitness Cost function for integrating in the cost to
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the fitness scalar.</p>
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<span class="summary_signature">
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<a href="#cost_func-instance_method" title="#cost_func (instance method)">- (Object) <strong>cost_func</strong> </a>
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<span class="summary_desc"><div class='inline'>
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<p>Compare function for fitness Cost function for integrating in the cost to
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the fitness scalar.</p>
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<span class="summary_signature">
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<a href="#end_run_func-instance_method" title="#end_run_func (instance method)">- (Object) <strong>end_run_func</strong> </a>
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</span>
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<span class="summary_desc"><div class='inline'>
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<p>End run function to call at the end of each generational run Also
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report_hook to dump reports for the user, etc.</p>
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</div></span>
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<span class="summary_signature">
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<a href="#evaluator-instance_method" title="#evaluator (instance method)">- (Object) <strong>evaluator</strong> </a>
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</span>
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<span class="summary_desc"><div class='inline'>
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<p>Returns the value of attribute evaluator.</p>
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</div></span>
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</li>
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<span class="summary_signature">
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<a href="#evaluator_class-instance_method" title="#evaluator_class (instance method)">- (Object) <strong>evaluator_class</strong> </a>
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</span>
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<span class="summary_desc"><div class='inline'>
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<p>Returns the value of attribute evaluator_class.</p>
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</div></span>
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</li>
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<li class="public ">
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<span class="summary_signature">
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<a href="#evolver-instance_method" title="#evolver (instance method)">- (Object) <strong>evolver</strong> </a>
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</span>
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<span class="summary_desc"><div class='inline'>
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<p>Returns the value of attribute evolver.</p>
|
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</div></span>
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</li>
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<li class="public ">
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<span class="summary_signature">
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|
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<a href="#evolver_class-instance_method" title="#evolver_class (instance method)">- (Object) <strong>evolver_class</strong> </a>
|
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</span>
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|
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<span class="summary_desc"><div class='inline'>
|
|
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|
+
<p>Returns the value of attribute evolver_class.</p>
|
|
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|
+
</div></span>
|
|
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+
|
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+
</li>
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+
|
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+
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<li class="public ">
|
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+
<span class="summary_signature">
|
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+
|
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333
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+
<a href="#expressor-instance_method" title="#expressor (instance method)">- (Object) <strong>expressor</strong> </a>
|
|
334
|
+
|
|
335
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+
|
|
336
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+
|
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</span>
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|
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+
|
|
349
|
+
|
|
350
|
+
<span class="summary_desc"><div class='inline'>
|
|
351
|
+
<p>Returns the value of attribute expressor.</p>
|
|
352
|
+
</div></span>
|
|
353
|
+
|
|
354
|
+
</li>
|
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355
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+
|
|
356
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+
|
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357
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+
<li class="public ">
|
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358
|
+
<span class="summary_signature">
|
|
359
|
+
|
|
360
|
+
<a href="#expressor_class-instance_method" title="#expressor_class (instance method)">- (Object) <strong>expressor_class</strong> </a>
|
|
361
|
+
|
|
362
|
+
|
|
363
|
+
|
|
364
|
+
</span>
|
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+
|
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366
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+
|
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+
|
|
368
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+
|
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369
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+
|
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+
|
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371
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+
|
|
372
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+
|
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373
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+
|
|
374
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+
|
|
375
|
+
|
|
376
|
+
|
|
377
|
+
<span class="summary_desc"><div class='inline'>
|
|
378
|
+
<p>Returns the value of attribute expressor_class.</p>
|
|
379
|
+
</div></span>
|
|
380
|
+
|
|
381
|
+
</li>
|
|
382
|
+
|
|
383
|
+
|
|
384
|
+
<li class="public ">
|
|
385
|
+
<span class="summary_signature">
|
|
386
|
+
|
|
387
|
+
<a href="#fitness_func-instance_method" title="#fitness_func (instance method)">- (Object) <strong>fitness_func</strong> </a>
|
|
388
|
+
|
|
389
|
+
|
|
390
|
+
|
|
391
|
+
</span>
|
|
392
|
+
|
|
393
|
+
|
|
394
|
+
|
|
395
|
+
|
|
396
|
+
|
|
397
|
+
|
|
398
|
+
|
|
399
|
+
|
|
400
|
+
|
|
401
|
+
|
|
402
|
+
|
|
403
|
+
|
|
404
|
+
<span class="summary_desc"><div class='inline'>
|
|
405
|
+
<p>Fitness function that Critters shall be rated on.</p>
|
|
406
|
+
</div></span>
|
|
407
|
+
|
|
408
|
+
</li>
|
|
409
|
+
|
|
410
|
+
|
|
411
|
+
<li class="public ">
|
|
412
|
+
<span class="summary_signature">
|
|
413
|
+
|
|
414
|
+
<a href="#generation_num-instance_method" title="#generation_num (instance method)">- (Object) <strong>generation_num</strong> </a>
|
|
415
|
+
|
|
416
|
+
|
|
417
|
+
|
|
418
|
+
</span>
|
|
419
|
+
|
|
420
|
+
|
|
421
|
+
|
|
422
|
+
|
|
423
|
+
<span class="note title readonly">readonly</span>
|
|
424
|
+
|
|
425
|
+
|
|
426
|
+
|
|
427
|
+
|
|
428
|
+
|
|
429
|
+
|
|
430
|
+
|
|
431
|
+
|
|
432
|
+
|
|
433
|
+
<span class="summary_desc"><div class='inline'>
|
|
434
|
+
<p>Current generation count.</p>
|
|
435
|
+
</div></span>
|
|
436
|
+
|
|
437
|
+
</li>
|
|
438
|
+
|
|
439
|
+
|
|
440
|
+
<li class="public ">
|
|
441
|
+
<span class="summary_signature">
|
|
442
|
+
|
|
443
|
+
<a href="#glob_innov_num-instance_method" title="#glob_innov_num (instance method)">- (Object) <strong>glob_innov_num</strong> </a>
|
|
444
|
+
|
|
445
|
+
|
|
446
|
+
|
|
447
|
+
</span>
|
|
448
|
+
|
|
449
|
+
|
|
450
|
+
|
|
451
|
+
|
|
452
|
+
<span class="note title readonly">readonly</span>
|
|
453
|
+
|
|
454
|
+
|
|
455
|
+
|
|
456
|
+
|
|
457
|
+
|
|
458
|
+
|
|
459
|
+
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
<span class="summary_desc"><div class='inline'>
|
|
463
|
+
<p>global innovation number.</p>
|
|
464
|
+
</div></span>
|
|
465
|
+
|
|
466
|
+
</li>
|
|
467
|
+
|
|
468
|
+
|
|
469
|
+
<li class="public ">
|
|
470
|
+
<span class="summary_signature">
|
|
471
|
+
|
|
472
|
+
<a href="#log-instance_method" title="#log (instance method)">- (Object) <strong>log</strong> </a>
|
|
473
|
+
|
|
474
|
+
|
|
475
|
+
|
|
476
|
+
</span>
|
|
477
|
+
|
|
478
|
+
|
|
479
|
+
|
|
480
|
+
|
|
481
|
+
<span class="note title readonly">readonly</span>
|
|
482
|
+
|
|
483
|
+
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
|
|
487
|
+
|
|
488
|
+
|
|
489
|
+
|
|
490
|
+
|
|
491
|
+
<span class="summary_desc"><div class='inline'>
|
|
492
|
+
<p>Logger object for all of RubyNEAT.</p>
|
|
493
|
+
</div></span>
|
|
494
|
+
|
|
495
|
+
</li>
|
|
496
|
+
|
|
497
|
+
|
|
498
|
+
<li class="public ">
|
|
499
|
+
<span class="summary_signature">
|
|
500
|
+
|
|
501
|
+
<a href="#neural_hidden-instance_method" title="#neural_hidden (instance method)">- (Object) <strong>neural_hidden</strong> </a>
|
|
502
|
+
|
|
503
|
+
|
|
504
|
+
|
|
505
|
+
</span>
|
|
506
|
+
|
|
507
|
+
|
|
508
|
+
|
|
509
|
+
|
|
510
|
+
|
|
511
|
+
|
|
512
|
+
|
|
513
|
+
|
|
514
|
+
|
|
515
|
+
|
|
516
|
+
|
|
517
|
+
|
|
518
|
+
<span class="summary_desc"><div class='inline'>
|
|
519
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
520
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron).</p>
|
|
521
|
+
</div></span>
|
|
522
|
+
|
|
523
|
+
</li>
|
|
524
|
+
|
|
525
|
+
|
|
526
|
+
<li class="public ">
|
|
527
|
+
<span class="summary_signature">
|
|
528
|
+
|
|
529
|
+
<a href="#neural_inputs-instance_method" title="#neural_inputs (instance method)">- (Object) <strong>neural_inputs</strong> </a>
|
|
530
|
+
|
|
531
|
+
|
|
532
|
+
|
|
533
|
+
</span>
|
|
534
|
+
|
|
535
|
+
|
|
536
|
+
|
|
537
|
+
|
|
538
|
+
|
|
539
|
+
|
|
540
|
+
|
|
541
|
+
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
|
|
545
|
+
|
|
546
|
+
<span class="summary_desc"><div class='inline'>
|
|
547
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
548
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron).</p>
|
|
549
|
+
</div></span>
|
|
550
|
+
|
|
551
|
+
</li>
|
|
552
|
+
|
|
553
|
+
|
|
554
|
+
<li class="public ">
|
|
555
|
+
<span class="summary_signature">
|
|
556
|
+
|
|
557
|
+
<a href="#neural_outputs-instance_method" title="#neural_outputs (instance method)">- (Object) <strong>neural_outputs</strong> </a>
|
|
558
|
+
|
|
559
|
+
|
|
560
|
+
|
|
561
|
+
</span>
|
|
562
|
+
|
|
563
|
+
|
|
564
|
+
|
|
565
|
+
|
|
566
|
+
|
|
567
|
+
|
|
568
|
+
|
|
569
|
+
|
|
570
|
+
|
|
571
|
+
|
|
572
|
+
|
|
573
|
+
|
|
574
|
+
<span class="summary_desc"><div class='inline'>
|
|
575
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
576
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron).</p>
|
|
577
|
+
</div></span>
|
|
578
|
+
|
|
579
|
+
</li>
|
|
580
|
+
|
|
581
|
+
|
|
582
|
+
<li class="public ">
|
|
583
|
+
<span class="summary_signature">
|
|
584
|
+
|
|
585
|
+
<a href="#neuron_catalog-instance_method" title="#neuron_catalog (instance method)">- (Object) <strong>neuron_catalog</strong> </a>
|
|
586
|
+
|
|
587
|
+
|
|
588
|
+
|
|
589
|
+
</span>
|
|
590
|
+
|
|
591
|
+
|
|
592
|
+
|
|
593
|
+
|
|
594
|
+
|
|
595
|
+
|
|
596
|
+
|
|
597
|
+
|
|
598
|
+
|
|
599
|
+
|
|
600
|
+
|
|
601
|
+
|
|
602
|
+
<span class="summary_desc"><div class='inline'>
|
|
603
|
+
<p>catalog of neurons classes to use { weight => nclass, … }.</p>
|
|
604
|
+
</div></span>
|
|
605
|
+
|
|
606
|
+
</li>
|
|
607
|
+
|
|
608
|
+
|
|
609
|
+
<li class="public ">
|
|
610
|
+
<span class="summary_signature">
|
|
611
|
+
|
|
612
|
+
<a href="#parms-instance_method" title="#parms (instance method)">- (Object) <strong>parms</strong> </a>
|
|
613
|
+
|
|
614
|
+
|
|
615
|
+
|
|
616
|
+
</span>
|
|
617
|
+
|
|
618
|
+
|
|
619
|
+
|
|
620
|
+
|
|
621
|
+
|
|
622
|
+
|
|
623
|
+
|
|
624
|
+
|
|
625
|
+
|
|
626
|
+
|
|
627
|
+
|
|
628
|
+
|
|
629
|
+
<span class="summary_desc"><div class='inline'>
|
|
630
|
+
<p>Parameters for evolution (NeatParameters).</p>
|
|
631
|
+
</div></span>
|
|
632
|
+
|
|
633
|
+
</li>
|
|
634
|
+
|
|
635
|
+
|
|
636
|
+
<li class="public ">
|
|
637
|
+
<span class="summary_signature">
|
|
638
|
+
|
|
639
|
+
<a href="#population-instance_method" title="#population (instance method)">- (Object) <strong>population</strong> </a>
|
|
640
|
+
|
|
641
|
+
|
|
642
|
+
|
|
643
|
+
</span>
|
|
644
|
+
|
|
645
|
+
|
|
646
|
+
|
|
647
|
+
|
|
648
|
+
<span class="note title readonly">readonly</span>
|
|
649
|
+
|
|
650
|
+
|
|
651
|
+
|
|
652
|
+
|
|
653
|
+
|
|
654
|
+
|
|
655
|
+
|
|
656
|
+
|
|
657
|
+
|
|
658
|
+
<span class="summary_desc"><div class='inline'>
|
|
659
|
+
<p>population object and class specification.</p>
|
|
660
|
+
</div></span>
|
|
661
|
+
|
|
662
|
+
</li>
|
|
663
|
+
|
|
664
|
+
|
|
665
|
+
<li class="public ">
|
|
666
|
+
<span class="summary_signature">
|
|
667
|
+
|
|
668
|
+
<a href="#population_class-instance_method" title="#population_class (instance method)">- (Object) <strong>population_class</strong> </a>
|
|
669
|
+
|
|
670
|
+
|
|
671
|
+
|
|
672
|
+
</span>
|
|
673
|
+
|
|
674
|
+
|
|
675
|
+
|
|
676
|
+
|
|
677
|
+
<span class="note title readonly">readonly</span>
|
|
678
|
+
|
|
679
|
+
|
|
680
|
+
|
|
681
|
+
|
|
682
|
+
|
|
683
|
+
|
|
684
|
+
|
|
685
|
+
|
|
686
|
+
|
|
687
|
+
<span class="summary_desc"><div class='inline'>
|
|
688
|
+
<p>population object and class specification.</p>
|
|
689
|
+
</div></span>
|
|
690
|
+
|
|
691
|
+
</li>
|
|
692
|
+
|
|
693
|
+
|
|
694
|
+
<li class="public ">
|
|
695
|
+
<span class="summary_signature">
|
|
696
|
+
|
|
697
|
+
<a href="#population_history-instance_method" title="#population_history (instance method)">- (Object) <strong>population_history</strong> </a>
|
|
698
|
+
|
|
699
|
+
|
|
700
|
+
|
|
701
|
+
</span>
|
|
702
|
+
|
|
703
|
+
|
|
704
|
+
|
|
705
|
+
|
|
706
|
+
<span class="note title readonly">readonly</span>
|
|
707
|
+
|
|
708
|
+
|
|
709
|
+
|
|
710
|
+
|
|
711
|
+
|
|
712
|
+
|
|
713
|
+
|
|
714
|
+
|
|
715
|
+
|
|
716
|
+
<span class="summary_desc"><div class='inline'>
|
|
717
|
+
<p>population object and class specification.</p>
|
|
718
|
+
</div></span>
|
|
719
|
+
|
|
720
|
+
</li>
|
|
721
|
+
|
|
722
|
+
|
|
723
|
+
<li class="public ">
|
|
724
|
+
<span class="summary_signature">
|
|
725
|
+
|
|
726
|
+
<a href="#query_func-instance_method" title="#query_func (instance method)">- (Object) <strong>query_func</strong> </a>
|
|
727
|
+
|
|
728
|
+
|
|
729
|
+
|
|
730
|
+
</span>
|
|
731
|
+
|
|
732
|
+
|
|
733
|
+
|
|
734
|
+
|
|
735
|
+
|
|
736
|
+
|
|
737
|
+
|
|
738
|
+
|
|
739
|
+
|
|
740
|
+
|
|
741
|
+
|
|
742
|
+
|
|
743
|
+
<span class="summary_desc"><div class='inline'>
|
|
744
|
+
<p>Query function that Critters shall call.</p>
|
|
745
|
+
</div></span>
|
|
746
|
+
|
|
747
|
+
</li>
|
|
748
|
+
|
|
749
|
+
|
|
750
|
+
<li class="public ">
|
|
751
|
+
<span class="summary_signature">
|
|
752
|
+
|
|
753
|
+
<a href="#recurrence_func-instance_method" title="#recurrence_func (instance method)">- (Object) <strong>recurrence_func</strong> </a>
|
|
754
|
+
|
|
755
|
+
|
|
756
|
+
|
|
757
|
+
</span>
|
|
758
|
+
|
|
759
|
+
|
|
760
|
+
|
|
761
|
+
|
|
762
|
+
|
|
763
|
+
|
|
764
|
+
|
|
765
|
+
|
|
766
|
+
|
|
767
|
+
|
|
768
|
+
|
|
769
|
+
|
|
770
|
+
<span class="summary_desc"><div class='inline'>
|
|
771
|
+
<p>Recurrence function that Critters will yield to.</p>
|
|
772
|
+
</div></span>
|
|
773
|
+
|
|
774
|
+
</li>
|
|
775
|
+
|
|
776
|
+
|
|
777
|
+
<li class="public ">
|
|
778
|
+
<span class="summary_signature">
|
|
779
|
+
|
|
780
|
+
<a href="#report_hook-instance_method" title="#report_hook (instance method)">- (Object) <strong>report_hook</strong> </a>
|
|
781
|
+
|
|
782
|
+
|
|
783
|
+
|
|
784
|
+
</span>
|
|
785
|
+
|
|
786
|
+
|
|
787
|
+
|
|
788
|
+
|
|
789
|
+
|
|
790
|
+
|
|
791
|
+
|
|
792
|
+
|
|
793
|
+
|
|
794
|
+
|
|
795
|
+
|
|
796
|
+
|
|
797
|
+
<span class="summary_desc"><div class='inline'>
|
|
798
|
+
<p>End run function to call at the end of each generational run Also
|
|
799
|
+
report_hook to dump reports for the user, etc.</p>
|
|
800
|
+
</div></span>
|
|
801
|
+
|
|
802
|
+
</li>
|
|
803
|
+
|
|
804
|
+
|
|
805
|
+
<li class="public ">
|
|
806
|
+
<span class="summary_signature">
|
|
807
|
+
|
|
808
|
+
<a href="#seq_num-instance_method" title="#seq_num (instance method)">- (Object) <strong>seq_num</strong> </a>
|
|
809
|
+
|
|
810
|
+
|
|
811
|
+
|
|
812
|
+
</span>
|
|
813
|
+
|
|
814
|
+
|
|
815
|
+
|
|
816
|
+
|
|
817
|
+
<span class="note title readonly">readonly</span>
|
|
818
|
+
|
|
819
|
+
|
|
820
|
+
|
|
821
|
+
|
|
822
|
+
|
|
823
|
+
|
|
824
|
+
|
|
825
|
+
|
|
826
|
+
|
|
827
|
+
<span class="summary_desc"><div class='inline'>
|
|
828
|
+
<p>current sequence number being evaluated.</p>
|
|
829
|
+
</div></span>
|
|
830
|
+
|
|
831
|
+
</li>
|
|
832
|
+
|
|
833
|
+
|
|
834
|
+
<li class="public ">
|
|
835
|
+
<span class="summary_signature">
|
|
836
|
+
|
|
837
|
+
<a href="#stop_on_fit_func-instance_method" title="#stop_on_fit_func (instance method)">- (Object) <strong>stop_on_fit_func</strong> </a>
|
|
838
|
+
|
|
839
|
+
|
|
840
|
+
|
|
841
|
+
</span>
|
|
842
|
+
|
|
843
|
+
|
|
844
|
+
|
|
845
|
+
|
|
846
|
+
|
|
847
|
+
|
|
848
|
+
|
|
849
|
+
|
|
850
|
+
|
|
851
|
+
|
|
852
|
+
|
|
853
|
+
|
|
854
|
+
<span class="summary_desc"><div class='inline'>
|
|
855
|
+
<p>Compare function for fitness Cost function for integrating in the cost to
|
|
856
|
+
the fitness scalar.</p>
|
|
857
|
+
</div></span>
|
|
858
|
+
|
|
859
|
+
</li>
|
|
860
|
+
|
|
861
|
+
|
|
862
|
+
<li class="public ">
|
|
863
|
+
<span class="summary_signature">
|
|
864
|
+
|
|
865
|
+
<a href="#verbosity-instance_method" title="#verbosity (instance method)">- (Object) <strong>verbosity</strong> </a>
|
|
866
|
+
|
|
867
|
+
|
|
868
|
+
|
|
869
|
+
</span>
|
|
870
|
+
|
|
871
|
+
|
|
872
|
+
|
|
873
|
+
|
|
874
|
+
|
|
875
|
+
|
|
876
|
+
|
|
877
|
+
|
|
878
|
+
|
|
879
|
+
|
|
880
|
+
|
|
881
|
+
|
|
882
|
+
<span class="summary_desc"><div class='inline'>
|
|
883
|
+
<p>Global verbosity level: 1 - normal (the default) 2 - really verbose 3 -
|
|
884
|
+
maximally verbose Use in conjunction with log.debug.</p>
|
|
885
|
+
</div></span>
|
|
886
|
+
|
|
887
|
+
</li>
|
|
888
|
+
|
|
889
|
+
|
|
890
|
+
</ul>
|
|
891
|
+
|
|
892
|
+
|
|
893
|
+
|
|
894
|
+
|
|
895
|
+
|
|
896
|
+
<h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
|
897
|
+
<p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
|
|
898
|
+
|
|
899
|
+
|
|
900
|
+
|
|
901
|
+
<h2>
|
|
902
|
+
Instance Method Summary
|
|
903
|
+
<small>(<a href="#" class="summary_toggle">collapse</a>)</small>
|
|
904
|
+
</h2>
|
|
905
|
+
|
|
906
|
+
<ul class="summary">
|
|
907
|
+
|
|
908
|
+
<li class="public ">
|
|
909
|
+
<span class="summary_signature">
|
|
910
|
+
|
|
911
|
+
<a href="#gaussian-instance_method" title="#gaussian (instance method)">- (Object) <strong>gaussian</strong> </a>
|
|
912
|
+
|
|
913
|
+
|
|
914
|
+
|
|
915
|
+
</span>
|
|
916
|
+
|
|
917
|
+
|
|
918
|
+
|
|
919
|
+
|
|
920
|
+
|
|
921
|
+
|
|
922
|
+
|
|
923
|
+
|
|
924
|
+
|
|
925
|
+
<span class="summary_desc"><div class='inline'></div></span>
|
|
926
|
+
|
|
927
|
+
</li>
|
|
928
|
+
|
|
929
|
+
|
|
930
|
+
<li class="public ">
|
|
931
|
+
<span class="summary_signature">
|
|
932
|
+
|
|
933
|
+
<a href="#initialize-instance_method" title="#initialize (instance method)">- (Controller) <strong>initialize</strong>(neural_inputs: nil, neural_outputs: nil, neural_hidden: nil, parameters: NeatSettings.new, &block) </a>
|
|
934
|
+
|
|
935
|
+
|
|
936
|
+
|
|
937
|
+
</span>
|
|
938
|
+
|
|
939
|
+
|
|
940
|
+
<span class="note title constructor">constructor</span>
|
|
941
|
+
|
|
942
|
+
|
|
943
|
+
|
|
944
|
+
|
|
945
|
+
|
|
946
|
+
|
|
947
|
+
|
|
948
|
+
|
|
949
|
+
<span class="summary_desc"><div class='inline'><ul><li>
|
|
950
|
+
<p>neural_inputs – array of input classes - neural_outputs – array of output
|
|
951
|
+
classes - parameters – NeatParameters object, or a path to a YAML file to
|
|
952
|
+
create this.</p>
|
|
953
|
+
</li></ul>
|
|
954
|
+
</div></span>
|
|
955
|
+
|
|
956
|
+
</li>
|
|
957
|
+
|
|
958
|
+
|
|
959
|
+
<li class="public ">
|
|
960
|
+
<span class="summary_signature">
|
|
961
|
+
|
|
962
|
+
<a href="#new_innovation-instance_method" title="#new_innovation (instance method)">- (Object) <strong>new_innovation</strong> </a>
|
|
963
|
+
|
|
964
|
+
|
|
965
|
+
|
|
966
|
+
</span>
|
|
967
|
+
|
|
968
|
+
|
|
969
|
+
|
|
970
|
+
|
|
971
|
+
|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
+
<span class="summary_signature">
|
|
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|
+
|
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|
+
<a href="#run-instance_method" title="#run (instance method)">- (Object) <strong>run</strong> </a>
|
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|
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|
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|
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<span class="summary_desc"><div class='inline'>
|
|
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|
+
<p>Run this evolution.</p>
|
|
1000
|
+
</div></span>
|
|
1001
|
+
|
|
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|
+
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|
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<h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
|
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|
+
<p class="inherited"><span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
|
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|
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|
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|
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<div id="constructor_details" class="method_details_list">
|
|
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|
+
<h2>Constructor Details</h2>
|
|
1022
|
+
|
|
1023
|
+
<div class="method_details first">
|
|
1024
|
+
<h3 class="signature first" id="initialize-instance_method">
|
|
1025
|
+
|
|
1026
|
+
- (<tt><span class='object_link'><a href="" title="NEAT::Controller (class)">Controller</a></span></tt>) <strong>initialize</strong>(neural_inputs: nil, neural_outputs: nil, neural_hidden: nil, parameters: NeatSettings.new, &block)
|
|
1027
|
+
|
|
1028
|
+
|
|
1029
|
+
|
|
1030
|
+
|
|
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|
+
|
|
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|
+
</h3><div class="docstring">
|
|
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|
+
<div class="discussion">
|
|
1034
|
+
<ul><li>
|
|
1035
|
+
<p>neural_inputs – array of input classes</p>
|
|
1036
|
+
</li><li>
|
|
1037
|
+
<p>neural_outputs – array of output classes</p>
|
|
1038
|
+
</li><li>
|
|
1039
|
+
<p>parameters – NeatParameters object, or a path to a YAML file to create
|
|
1040
|
+
this.</p>
|
|
1041
|
+
</li></ul>
|
|
1042
|
+
|
|
1043
|
+
|
|
1044
|
+
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|
|
1045
|
+
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|
|
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|
+
<div class="tags">
|
|
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|
+
|
|
1048
|
+
|
|
1049
|
+
</div><table class="source_code">
|
|
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|
+
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|
|
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|
+
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|
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|
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<pre class="lines">
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|
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|
|
1087
|
+
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|
|
1088
|
+
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|
|
1089
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 334</span>
|
|
1090
|
+
|
|
1091
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='label'>neural_inputs:</span> <span class='kw'>nil</span><span class='comma'>,</span>
|
|
1092
|
+
<span class='label'>neural_outputs:</span> <span class='kw'>nil</span><span class='comma'>,</span>
|
|
1093
|
+
<span class='label'>neural_hidden:</span> <span class='kw'>nil</span><span class='comma'>,</span>
|
|
1094
|
+
<span class='label'>parameters:</span> <span class='const'>NeatSettings</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='comma'>,</span>
|
|
1095
|
+
<span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1096
|
+
<span class='kw'>super</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span>
|
|
1097
|
+
<span class='ivar'>@verbosity</span> <span class='op'>=</span> <span class='int'>1</span>
|
|
1098
|
+
<span class='ivar'>@glob_innov_num</span> <span class='op'>=</span> <span class='int'>0</span>
|
|
1099
|
+
<span class='ivar'>@gaussian</span> <span class='op'>=</span> <span class='const'>Distribution</span><span class='op'>::</span><span class='const'>Normal</span><span class='period'>.</span><span class='id identifier rubyid_rng'>rng</span>
|
|
1100
|
+
<span class='ivar'>@population_history</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
|
|
1101
|
+
<span class='ivar'>@evolver</span> <span class='op'>=</span> <span class='const'>Evolver</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span> <span class='kw'>self</span>
|
|
1102
|
+
<span class='ivar'>@expressor</span> <span class='op'>=</span> <span class='const'>Expressor</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span> <span class='kw'>self</span>
|
|
1103
|
+
|
|
1104
|
+
<span class='ivar'>@neuron_catalog</span> <span class='op'>=</span> <span class='const'>Neuron</span><span class='op'>::</span><span class='id identifier rubyid_neuron_types'>neuron_types</span><span class='period'>.</span><span class='id identifier rubyid_clone'>clone</span>
|
|
1105
|
+
<span class='ivar'>@neural_inputs</span> <span class='op'>=</span> <span class='id identifier rubyid_neural_inputs'>neural_inputs</span>
|
|
1106
|
+
<span class='ivar'>@neural_outputs</span> <span class='op'>=</span> <span class='id identifier rubyid_neural_outputs'>neural_outputs</span>
|
|
1107
|
+
<span class='ivar'>@neural_hidden</span> <span class='op'>=</span> <span class='id identifier rubyid_neural_hidden'>neural_hidden</span>
|
|
1108
|
+
|
|
1109
|
+
<span class='comment'># Default classes for population and operators, etc.
|
|
1110
|
+
</span> <span class='ivar'>@population_class</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Population</span>
|
|
1111
|
+
<span class='ivar'>@evaluator_class</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Evaluator</span>
|
|
1112
|
+
<span class='ivar'>@expressor_class</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Expressor</span>
|
|
1113
|
+
<span class='ivar'>@evolver_class</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Evolver</span>
|
|
1114
|
+
|
|
1115
|
+
<span class='comment'># Handle the parameters parameter. :-)
|
|
1116
|
+
</span> <span class='ivar'>@parms</span> <span class='op'>=</span> <span class='kw'>unless</span> <span class='id identifier rubyid_parameters'>parameters</span><span class='period'>.</span><span class='id identifier rubyid_kind_of?'>kind_of?</span> <span class='const'>String</span>
|
|
1117
|
+
<span class='id identifier rubyid_parameters'>parameters</span>
|
|
1118
|
+
<span class='kw'>else</span> <span class='comment'># load it from a file
|
|
1119
|
+
</span> <span class='id identifier rubyid_open'>open</span><span class='lparen'>(</span><span class='id identifier rubyid_parameters'>parameters</span><span class='comma'>,</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>r</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_fd'>fd</span><span class='op'>|</span> <span class='const'>YAML</span><span class='op'>::</span><span class='id identifier rubyid_load'>load</span> <span class='id identifier rubyid_fd'>fd</span><span class='period'>.</span><span class='id identifier rubyid_read'>read</span> <span class='rbrace'>}</span>
|
|
1120
|
+
<span class='kw'>end</span>
|
|
1121
|
+
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
1122
|
+
<span class='kw'>end</span></pre>
|
|
1123
|
+
</td>
|
|
1124
|
+
</tr>
|
|
1125
|
+
</table>
|
|
1126
|
+
</div>
|
|
1127
|
+
|
|
1128
|
+
</div>
|
|
1129
|
+
|
|
1130
|
+
<div id="instance_attr_details" class="attr_details">
|
|
1131
|
+
<h2>Instance Attribute Details</h2>
|
|
1132
|
+
|
|
1133
|
+
|
|
1134
|
+
<span id="compare_func=-instance_method"></span>
|
|
1135
|
+
<div class="method_details first">
|
|
1136
|
+
<h3 class="signature first" id="compare_func-instance_method">
|
|
1137
|
+
|
|
1138
|
+
- (<tt>Object</tt>) <strong>compare_func</strong>
|
|
1139
|
+
|
|
1140
|
+
|
|
1141
|
+
|
|
1142
|
+
|
|
1143
|
+
|
|
1144
|
+
</h3><div class="docstring">
|
|
1145
|
+
<div class="discussion">
|
|
1146
|
+
|
|
1147
|
+
<p>Compare function for fitness Cost function for integrating in the cost to
|
|
1148
|
+
the fitness scalar.</p>
|
|
1149
|
+
|
|
1150
|
+
|
|
1151
|
+
</div>
|
|
1152
|
+
</div>
|
|
1153
|
+
<div class="tags">
|
|
1154
|
+
|
|
1155
|
+
|
|
1156
|
+
</div><table class="source_code">
|
|
1157
|
+
<tr>
|
|
1158
|
+
<td>
|
|
1159
|
+
<pre class="lines">
|
|
1160
|
+
|
|
1161
|
+
|
|
1162
|
+
197
|
|
1163
|
+
198
|
|
1164
|
+
199</pre>
|
|
1165
|
+
</td>
|
|
1166
|
+
<td>
|
|
1167
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 197</span>
|
|
1168
|
+
|
|
1169
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_compare_func'>compare_func</span>
|
|
1170
|
+
<span class='ivar'>@compare_func</span>
|
|
1171
|
+
<span class='kw'>end</span></pre>
|
|
1172
|
+
</td>
|
|
1173
|
+
</tr>
|
|
1174
|
+
</table>
|
|
1175
|
+
</div>
|
|
1176
|
+
|
|
1177
|
+
|
|
1178
|
+
<span id="cost_func=-instance_method"></span>
|
|
1179
|
+
<div class="method_details ">
|
|
1180
|
+
<h3 class="signature " id="cost_func-instance_method">
|
|
1181
|
+
|
|
1182
|
+
- (<tt>Object</tt>) <strong>cost_func</strong>
|
|
1183
|
+
|
|
1184
|
+
|
|
1185
|
+
|
|
1186
|
+
|
|
1187
|
+
|
|
1188
|
+
</h3><div class="docstring">
|
|
1189
|
+
<div class="discussion">
|
|
1190
|
+
|
|
1191
|
+
<p>Compare function for fitness Cost function for integrating in the cost to
|
|
1192
|
+
the fitness scalar.</p>
|
|
1193
|
+
|
|
1194
|
+
|
|
1195
|
+
</div>
|
|
1196
|
+
</div>
|
|
1197
|
+
<div class="tags">
|
|
1198
|
+
|
|
1199
|
+
|
|
1200
|
+
</div><table class="source_code">
|
|
1201
|
+
<tr>
|
|
1202
|
+
<td>
|
|
1203
|
+
<pre class="lines">
|
|
1204
|
+
|
|
1205
|
+
|
|
1206
|
+
197
|
|
1207
|
+
198
|
|
1208
|
+
199</pre>
|
|
1209
|
+
</td>
|
|
1210
|
+
<td>
|
|
1211
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 197</span>
|
|
1212
|
+
|
|
1213
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_cost_func'>cost_func</span>
|
|
1214
|
+
<span class='ivar'>@cost_func</span>
|
|
1215
|
+
<span class='kw'>end</span></pre>
|
|
1216
|
+
</td>
|
|
1217
|
+
</tr>
|
|
1218
|
+
</table>
|
|
1219
|
+
</div>
|
|
1220
|
+
|
|
1221
|
+
|
|
1222
|
+
<span id="end_run_func=-instance_method"></span>
|
|
1223
|
+
<div class="method_details ">
|
|
1224
|
+
<h3 class="signature " id="end_run_func-instance_method">
|
|
1225
|
+
|
|
1226
|
+
- (<tt>Object</tt>) <strong>end_run_func</strong>
|
|
1227
|
+
|
|
1228
|
+
|
|
1229
|
+
|
|
1230
|
+
|
|
1231
|
+
|
|
1232
|
+
</h3><div class="docstring">
|
|
1233
|
+
<div class="discussion">
|
|
1234
|
+
|
|
1235
|
+
<p>End run function to call at the end of each generational run Also
|
|
1236
|
+
report_hook to dump reports for the user, etc.</p>
|
|
1237
|
+
|
|
1238
|
+
|
|
1239
|
+
</div>
|
|
1240
|
+
</div>
|
|
1241
|
+
<div class="tags">
|
|
1242
|
+
|
|
1243
|
+
|
|
1244
|
+
</div><table class="source_code">
|
|
1245
|
+
<tr>
|
|
1246
|
+
<td>
|
|
1247
|
+
<pre class="lines">
|
|
1248
|
+
|
|
1249
|
+
|
|
1250
|
+
201
|
|
1251
|
+
202
|
|
1252
|
+
203</pre>
|
|
1253
|
+
</td>
|
|
1254
|
+
<td>
|
|
1255
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 201</span>
|
|
1256
|
+
|
|
1257
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_end_run_func'>end_run_func</span>
|
|
1258
|
+
<span class='ivar'>@end_run_func</span>
|
|
1259
|
+
<span class='kw'>end</span></pre>
|
|
1260
|
+
</td>
|
|
1261
|
+
</tr>
|
|
1262
|
+
</table>
|
|
1263
|
+
</div>
|
|
1264
|
+
|
|
1265
|
+
|
|
1266
|
+
<span id="evaluator=-instance_method"></span>
|
|
1267
|
+
<div class="method_details ">
|
|
1268
|
+
<h3 class="signature " id="evaluator-instance_method">
|
|
1269
|
+
|
|
1270
|
+
- (<tt>Object</tt>) <strong>evaluator</strong>
|
|
1271
|
+
|
|
1272
|
+
|
|
1273
|
+
|
|
1274
|
+
|
|
1275
|
+
|
|
1276
|
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|
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<p>Returns the value of attribute evaluator</p>
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 176</span>
|
|
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|
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|
|
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|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evaluator'>evaluator</span>
|
|
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|
+
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|
|
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|
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<span class='kw'>end</span></pre>
|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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- (<tt>Object</tt>) <strong>evaluator_class</strong>
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|
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|
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|
|
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|
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<p>Returns the value of attribute evaluator_class</p>
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 176</span>
|
|
1342
|
+
|
|
1343
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evaluator_class'>evaluator_class</span>
|
|
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|
+
<span class='ivar'>@evaluator_class</span>
|
|
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|
+
<span class='kw'>end</span></pre>
|
|
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|
+
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|
|
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|
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|
|
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|
|
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|
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</div>
|
|
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|
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|
|
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|
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|
|
1352
|
+
<span id="evolver=-instance_method"></span>
|
|
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|
+
<div class="method_details ">
|
|
1354
|
+
<h3 class="signature " id="evolver-instance_method">
|
|
1355
|
+
|
|
1356
|
+
- (<tt>Object</tt>) <strong>evolver</strong>
|
|
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|
+
|
|
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|
+
|
|
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|
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|
|
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|
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|
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|
|
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|
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|
|
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|
+
<div class="discussion">
|
|
1364
|
+
|
|
1365
|
+
<p>Returns the value of attribute evolver</p>
|
|
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|
+
|
|
1367
|
+
|
|
1368
|
+
</div>
|
|
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|
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|
|
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|
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<div class="tags">
|
|
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|
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|
|
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|
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|
|
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|
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</div><table class="source_code">
|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
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179</pre>
|
|
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|
+
</td>
|
|
1383
|
+
<td>
|
|
1384
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 177</span>
|
|
1385
|
+
|
|
1386
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evolver'>evolver</span>
|
|
1387
|
+
<span class='ivar'>@evolver</span>
|
|
1388
|
+
<span class='kw'>end</span></pre>
|
|
1389
|
+
</td>
|
|
1390
|
+
</tr>
|
|
1391
|
+
</table>
|
|
1392
|
+
</div>
|
|
1393
|
+
|
|
1394
|
+
|
|
1395
|
+
<span id="evolver_class=-instance_method"></span>
|
|
1396
|
+
<div class="method_details ">
|
|
1397
|
+
<h3 class="signature " id="evolver_class-instance_method">
|
|
1398
|
+
|
|
1399
|
+
- (<tt>Object</tt>) <strong>evolver_class</strong>
|
|
1400
|
+
|
|
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|
+
|
|
1402
|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
</h3><div class="docstring">
|
|
1406
|
+
<div class="discussion">
|
|
1407
|
+
|
|
1408
|
+
<p>Returns the value of attribute evolver_class</p>
|
|
1409
|
+
|
|
1410
|
+
|
|
1411
|
+
</div>
|
|
1412
|
+
</div>
|
|
1413
|
+
<div class="tags">
|
|
1414
|
+
|
|
1415
|
+
|
|
1416
|
+
</div><table class="source_code">
|
|
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|
+
<tr>
|
|
1418
|
+
<td>
|
|
1419
|
+
<pre class="lines">
|
|
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|
+
|
|
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|
+
|
|
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|
+
177
|
|
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|
+
178
|
|
1424
|
+
179</pre>
|
|
1425
|
+
</td>
|
|
1426
|
+
<td>
|
|
1427
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 177</span>
|
|
1428
|
+
|
|
1429
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evolver_class'>evolver_class</span>
|
|
1430
|
+
<span class='ivar'>@evolver_class</span>
|
|
1431
|
+
<span class='kw'>end</span></pre>
|
|
1432
|
+
</td>
|
|
1433
|
+
</tr>
|
|
1434
|
+
</table>
|
|
1435
|
+
</div>
|
|
1436
|
+
|
|
1437
|
+
|
|
1438
|
+
<span id="expressor=-instance_method"></span>
|
|
1439
|
+
<div class="method_details ">
|
|
1440
|
+
<h3 class="signature " id="expressor-instance_method">
|
|
1441
|
+
|
|
1442
|
+
- (<tt>Object</tt>) <strong>expressor</strong>
|
|
1443
|
+
|
|
1444
|
+
|
|
1445
|
+
|
|
1446
|
+
|
|
1447
|
+
|
|
1448
|
+
</h3><div class="docstring">
|
|
1449
|
+
<div class="discussion">
|
|
1450
|
+
|
|
1451
|
+
<p>Returns the value of attribute expressor</p>
|
|
1452
|
+
|
|
1453
|
+
|
|
1454
|
+
</div>
|
|
1455
|
+
</div>
|
|
1456
|
+
<div class="tags">
|
|
1457
|
+
|
|
1458
|
+
|
|
1459
|
+
</div><table class="source_code">
|
|
1460
|
+
<tr>
|
|
1461
|
+
<td>
|
|
1462
|
+
<pre class="lines">
|
|
1463
|
+
|
|
1464
|
+
|
|
1465
|
+
175
|
|
1466
|
+
176
|
|
1467
|
+
177</pre>
|
|
1468
|
+
</td>
|
|
1469
|
+
<td>
|
|
1470
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 175</span>
|
|
1471
|
+
|
|
1472
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_expressor'>expressor</span>
|
|
1473
|
+
<span class='ivar'>@expressor</span>
|
|
1474
|
+
<span class='kw'>end</span></pre>
|
|
1475
|
+
</td>
|
|
1476
|
+
</tr>
|
|
1477
|
+
</table>
|
|
1478
|
+
</div>
|
|
1479
|
+
|
|
1480
|
+
|
|
1481
|
+
<span id="expressor_class=-instance_method"></span>
|
|
1482
|
+
<div class="method_details ">
|
|
1483
|
+
<h3 class="signature " id="expressor_class-instance_method">
|
|
1484
|
+
|
|
1485
|
+
- (<tt>Object</tt>) <strong>expressor_class</strong>
|
|
1486
|
+
|
|
1487
|
+
|
|
1488
|
+
|
|
1489
|
+
|
|
1490
|
+
|
|
1491
|
+
</h3><div class="docstring">
|
|
1492
|
+
<div class="discussion">
|
|
1493
|
+
|
|
1494
|
+
<p>Returns the value of attribute expressor_class</p>
|
|
1495
|
+
|
|
1496
|
+
|
|
1497
|
+
</div>
|
|
1498
|
+
</div>
|
|
1499
|
+
<div class="tags">
|
|
1500
|
+
|
|
1501
|
+
|
|
1502
|
+
</div><table class="source_code">
|
|
1503
|
+
<tr>
|
|
1504
|
+
<td>
|
|
1505
|
+
<pre class="lines">
|
|
1506
|
+
|
|
1507
|
+
|
|
1508
|
+
175
|
|
1509
|
+
176
|
|
1510
|
+
177</pre>
|
|
1511
|
+
</td>
|
|
1512
|
+
<td>
|
|
1513
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 175</span>
|
|
1514
|
+
|
|
1515
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_expressor_class'>expressor_class</span>
|
|
1516
|
+
<span class='ivar'>@expressor_class</span>
|
|
1517
|
+
<span class='kw'>end</span></pre>
|
|
1518
|
+
</td>
|
|
1519
|
+
</tr>
|
|
1520
|
+
</table>
|
|
1521
|
+
</div>
|
|
1522
|
+
|
|
1523
|
+
|
|
1524
|
+
<span id="fitness_func=-instance_method"></span>
|
|
1525
|
+
<div class="method_details ">
|
|
1526
|
+
<h3 class="signature " id="fitness_func-instance_method">
|
|
1527
|
+
|
|
1528
|
+
- (<tt>Object</tt>) <strong>fitness_func</strong>
|
|
1529
|
+
|
|
1530
|
+
|
|
1531
|
+
|
|
1532
|
+
|
|
1533
|
+
|
|
1534
|
+
</h3><div class="docstring">
|
|
1535
|
+
<div class="discussion">
|
|
1536
|
+
|
|
1537
|
+
<p>Fitness function that Critters shall be rated on.</p>
|
|
1538
|
+
|
|
1539
|
+
|
|
1540
|
+
</div>
|
|
1541
|
+
</div>
|
|
1542
|
+
<div class="tags">
|
|
1543
|
+
|
|
1544
|
+
|
|
1545
|
+
</div><table class="source_code">
|
|
1546
|
+
<tr>
|
|
1547
|
+
<td>
|
|
1548
|
+
<pre class="lines">
|
|
1549
|
+
|
|
1550
|
+
|
|
1551
|
+
190
|
|
1552
|
+
191
|
|
1553
|
+
192</pre>
|
|
1554
|
+
</td>
|
|
1555
|
+
<td>
|
|
1556
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 190</span>
|
|
1557
|
+
|
|
1558
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_fitness_func'>fitness_func</span>
|
|
1559
|
+
<span class='ivar'>@fitness_func</span>
|
|
1560
|
+
<span class='kw'>end</span></pre>
|
|
1561
|
+
</td>
|
|
1562
|
+
</tr>
|
|
1563
|
+
</table>
|
|
1564
|
+
</div>
|
|
1565
|
+
|
|
1566
|
+
|
|
1567
|
+
<span id=""></span>
|
|
1568
|
+
<div class="method_details ">
|
|
1569
|
+
<h3 class="signature " id="generation_num-instance_method">
|
|
1570
|
+
|
|
1571
|
+
- (<tt>Object</tt>) <strong>generation_num</strong> <span class="extras">(readonly)</span>
|
|
1572
|
+
|
|
1573
|
+
|
|
1574
|
+
|
|
1575
|
+
|
|
1576
|
+
|
|
1577
|
+
</h3><div class="docstring">
|
|
1578
|
+
<div class="discussion">
|
|
1579
|
+
|
|
1580
|
+
<p>Current generation count</p>
|
|
1581
|
+
|
|
1582
|
+
|
|
1583
|
+
</div>
|
|
1584
|
+
</div>
|
|
1585
|
+
<div class="tags">
|
|
1586
|
+
|
|
1587
|
+
|
|
1588
|
+
</div><table class="source_code">
|
|
1589
|
+
<tr>
|
|
1590
|
+
<td>
|
|
1591
|
+
<pre class="lines">
|
|
1592
|
+
|
|
1593
|
+
|
|
1594
|
+
160
|
|
1595
|
+
161
|
|
1596
|
+
162</pre>
|
|
1597
|
+
</td>
|
|
1598
|
+
<td>
|
|
1599
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 160</span>
|
|
1600
|
+
|
|
1601
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_generation_num'>generation_num</span>
|
|
1602
|
+
<span class='ivar'>@generation_num</span>
|
|
1603
|
+
<span class='kw'>end</span></pre>
|
|
1604
|
+
</td>
|
|
1605
|
+
</tr>
|
|
1606
|
+
</table>
|
|
1607
|
+
</div>
|
|
1608
|
+
|
|
1609
|
+
|
|
1610
|
+
<span id=""></span>
|
|
1611
|
+
<div class="method_details ">
|
|
1612
|
+
<h3 class="signature " id="glob_innov_num-instance_method">
|
|
1613
|
+
|
|
1614
|
+
- (<tt>Object</tt>) <strong>glob_innov_num</strong> <span class="extras">(readonly)</span>
|
|
1615
|
+
|
|
1616
|
+
|
|
1617
|
+
|
|
1618
|
+
|
|
1619
|
+
|
|
1620
|
+
</h3><div class="docstring">
|
|
1621
|
+
<div class="discussion">
|
|
1622
|
+
|
|
1623
|
+
<p>global innovation number</p>
|
|
1624
|
+
|
|
1625
|
+
|
|
1626
|
+
</div>
|
|
1627
|
+
</div>
|
|
1628
|
+
<div class="tags">
|
|
1629
|
+
|
|
1630
|
+
|
|
1631
|
+
</div><table class="source_code">
|
|
1632
|
+
<tr>
|
|
1633
|
+
<td>
|
|
1634
|
+
<pre class="lines">
|
|
1635
|
+
|
|
1636
|
+
|
|
1637
|
+
154
|
|
1638
|
+
155
|
|
1639
|
+
156</pre>
|
|
1640
|
+
</td>
|
|
1641
|
+
<td>
|
|
1642
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 154</span>
|
|
1643
|
+
|
|
1644
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_glob_innov_num'>glob_innov_num</span>
|
|
1645
|
+
<span class='ivar'>@glob_innov_num</span>
|
|
1646
|
+
<span class='kw'>end</span></pre>
|
|
1647
|
+
</td>
|
|
1648
|
+
</tr>
|
|
1649
|
+
</table>
|
|
1650
|
+
</div>
|
|
1651
|
+
|
|
1652
|
+
|
|
1653
|
+
<span id=""></span>
|
|
1654
|
+
<div class="method_details ">
|
|
1655
|
+
<h3 class="signature " id="log-instance_method">
|
|
1656
|
+
|
|
1657
|
+
- (<tt>Object</tt>) <strong>log</strong> <span class="extras">(readonly)</span>
|
|
1658
|
+
|
|
1659
|
+
|
|
1660
|
+
|
|
1661
|
+
|
|
1662
|
+
|
|
1663
|
+
</h3><div class="docstring">
|
|
1664
|
+
<div class="discussion">
|
|
1665
|
+
|
|
1666
|
+
<p>Logger object for all of RubyNEAT</p>
|
|
1667
|
+
|
|
1668
|
+
|
|
1669
|
+
</div>
|
|
1670
|
+
</div>
|
|
1671
|
+
<div class="tags">
|
|
1672
|
+
|
|
1673
|
+
|
|
1674
|
+
</div><table class="source_code">
|
|
1675
|
+
<tr>
|
|
1676
|
+
<td>
|
|
1677
|
+
<pre class="lines">
|
|
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|
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|
|
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|
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|
|
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|
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204
|
|
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|
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205
|
|
1682
|
+
206</pre>
|
|
1683
|
+
</td>
|
|
1684
|
+
<td>
|
|
1685
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 204</span>
|
|
1686
|
+
|
|
1687
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_log'>log</span>
|
|
1688
|
+
<span class='ivar'>@log</span>
|
|
1689
|
+
<span class='kw'>end</span></pre>
|
|
1690
|
+
</td>
|
|
1691
|
+
</tr>
|
|
1692
|
+
</table>
|
|
1693
|
+
</div>
|
|
1694
|
+
|
|
1695
|
+
|
|
1696
|
+
<span id="neural_hidden=-instance_method"></span>
|
|
1697
|
+
<div class="method_details ">
|
|
1698
|
+
<h3 class="signature " id="neural_hidden-instance_method">
|
|
1699
|
+
|
|
1700
|
+
- (<tt>Object</tt>) <strong>neural_hidden</strong>
|
|
1701
|
+
|
|
1702
|
+
|
|
1703
|
+
|
|
1704
|
+
|
|
1705
|
+
|
|
1706
|
+
</h3><div class="docstring">
|
|
1707
|
+
<div class="discussion">
|
|
1708
|
+
|
|
1709
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
1710
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron)</p>
|
|
1711
|
+
|
|
1712
|
+
|
|
1713
|
+
</div>
|
|
1714
|
+
</div>
|
|
1715
|
+
<div class="tags">
|
|
1716
|
+
|
|
1717
|
+
|
|
1718
|
+
</div><table class="source_code">
|
|
1719
|
+
<tr>
|
|
1720
|
+
<td>
|
|
1721
|
+
<pre class="lines">
|
|
1722
|
+
|
|
1723
|
+
|
|
1724
|
+
167
|
|
1725
|
+
168
|
|
1726
|
+
169</pre>
|
|
1727
|
+
</td>
|
|
1728
|
+
<td>
|
|
1729
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 167</span>
|
|
1730
|
+
|
|
1731
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_neural_hidden'>neural_hidden</span>
|
|
1732
|
+
<span class='ivar'>@neural_hidden</span>
|
|
1733
|
+
<span class='kw'>end</span></pre>
|
|
1734
|
+
</td>
|
|
1735
|
+
</tr>
|
|
1736
|
+
</table>
|
|
1737
|
+
</div>
|
|
1738
|
+
|
|
1739
|
+
|
|
1740
|
+
<span id="neural_inputs=-instance_method"></span>
|
|
1741
|
+
<div class="method_details ">
|
|
1742
|
+
<h3 class="signature " id="neural_inputs-instance_method">
|
|
1743
|
+
|
|
1744
|
+
- (<tt>Object</tt>) <strong>neural_inputs</strong>
|
|
1745
|
+
|
|
1746
|
+
|
|
1747
|
+
|
|
1748
|
+
|
|
1749
|
+
|
|
1750
|
+
</h3><div class="docstring">
|
|
1751
|
+
<div class="discussion">
|
|
1752
|
+
|
|
1753
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
1754
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron)</p>
|
|
1755
|
+
|
|
1756
|
+
|
|
1757
|
+
</div>
|
|
1758
|
+
</div>
|
|
1759
|
+
<div class="tags">
|
|
1760
|
+
|
|
1761
|
+
|
|
1762
|
+
</div><table class="source_code">
|
|
1763
|
+
<tr>
|
|
1764
|
+
<td>
|
|
1765
|
+
<pre class="lines">
|
|
1766
|
+
|
|
1767
|
+
|
|
1768
|
+
167
|
|
1769
|
+
168
|
|
1770
|
+
169</pre>
|
|
1771
|
+
</td>
|
|
1772
|
+
<td>
|
|
1773
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 167</span>
|
|
1774
|
+
|
|
1775
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_neural_inputs'>neural_inputs</span>
|
|
1776
|
+
<span class='ivar'>@neural_inputs</span>
|
|
1777
|
+
<span class='kw'>end</span></pre>
|
|
1778
|
+
</td>
|
|
1779
|
+
</tr>
|
|
1780
|
+
</table>
|
|
1781
|
+
</div>
|
|
1782
|
+
|
|
1783
|
+
|
|
1784
|
+
<span id="neural_outputs=-instance_method"></span>
|
|
1785
|
+
<div class="method_details ">
|
|
1786
|
+
<h3 class="signature " id="neural_outputs-instance_method">
|
|
1787
|
+
|
|
1788
|
+
- (<tt>Object</tt>) <strong>neural_outputs</strong>
|
|
1789
|
+
|
|
1790
|
+
|
|
1791
|
+
|
|
1792
|
+
|
|
1793
|
+
|
|
1794
|
+
</h3><div class="docstring">
|
|
1795
|
+
<div class="discussion">
|
|
1796
|
+
|
|
1797
|
+
<p>Class map of named input and output neurons (each critter will have
|
|
1798
|
+
instantiations of these) name: InputNeuralClass (usually InputNeuron)</p>
|
|
1799
|
+
|
|
1800
|
+
|
|
1801
|
+
</div>
|
|
1802
|
+
</div>
|
|
1803
|
+
<div class="tags">
|
|
1804
|
+
|
|
1805
|
+
|
|
1806
|
+
</div><table class="source_code">
|
|
1807
|
+
<tr>
|
|
1808
|
+
<td>
|
|
1809
|
+
<pre class="lines">
|
|
1810
|
+
|
|
1811
|
+
|
|
1812
|
+
167
|
|
1813
|
+
168
|
|
1814
|
+
169</pre>
|
|
1815
|
+
</td>
|
|
1816
|
+
<td>
|
|
1817
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 167</span>
|
|
1818
|
+
|
|
1819
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_neural_outputs'>neural_outputs</span>
|
|
1820
|
+
<span class='ivar'>@neural_outputs</span>
|
|
1821
|
+
<span class='kw'>end</span></pre>
|
|
1822
|
+
</td>
|
|
1823
|
+
</tr>
|
|
1824
|
+
</table>
|
|
1825
|
+
</div>
|
|
1826
|
+
|
|
1827
|
+
|
|
1828
|
+
<span id="neuron_catalog=-instance_method"></span>
|
|
1829
|
+
<div class="method_details ">
|
|
1830
|
+
<h3 class="signature " id="neuron_catalog-instance_method">
|
|
1831
|
+
|
|
1832
|
+
- (<tt>Object</tt>) <strong>neuron_catalog</strong>
|
|
1833
|
+
|
|
1834
|
+
|
|
1835
|
+
|
|
1836
|
+
|
|
1837
|
+
|
|
1838
|
+
</h3><div class="docstring">
|
|
1839
|
+
<div class="discussion">
|
|
1840
|
+
|
|
1841
|
+
<p>catalog of neurons classes to use { weight => nclass, … }</p>
|
|
1842
|
+
|
|
1843
|
+
|
|
1844
|
+
</div>
|
|
1845
|
+
</div>
|
|
1846
|
+
<div class="tags">
|
|
1847
|
+
|
|
1848
|
+
|
|
1849
|
+
</div><table class="source_code">
|
|
1850
|
+
<tr>
|
|
1851
|
+
<td>
|
|
1852
|
+
<pre class="lines">
|
|
1853
|
+
|
|
1854
|
+
|
|
1855
|
+
163
|
|
1856
|
+
164
|
|
1857
|
+
165</pre>
|
|
1858
|
+
</td>
|
|
1859
|
+
<td>
|
|
1860
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 163</span>
|
|
1861
|
+
|
|
1862
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_neuron_catalog'>neuron_catalog</span>
|
|
1863
|
+
<span class='ivar'>@neuron_catalog</span>
|
|
1864
|
+
<span class='kw'>end</span></pre>
|
|
1865
|
+
</td>
|
|
1866
|
+
</tr>
|
|
1867
|
+
</table>
|
|
1868
|
+
</div>
|
|
1869
|
+
|
|
1870
|
+
|
|
1871
|
+
<span id="parms=-instance_method"></span>
|
|
1872
|
+
<div class="method_details ">
|
|
1873
|
+
<h3 class="signature " id="parms-instance_method">
|
|
1874
|
+
|
|
1875
|
+
- (<tt>Object</tt>) <strong>parms</strong>
|
|
1876
|
+
|
|
1877
|
+
|
|
1878
|
+
|
|
1879
|
+
|
|
1880
|
+
|
|
1881
|
+
</h3><div class="docstring">
|
|
1882
|
+
<div class="discussion">
|
|
1883
|
+
|
|
1884
|
+
<p>Parameters for evolution (NeatParameters)</p>
|
|
1885
|
+
|
|
1886
|
+
|
|
1887
|
+
</div>
|
|
1888
|
+
</div>
|
|
1889
|
+
<div class="tags">
|
|
1890
|
+
|
|
1891
|
+
|
|
1892
|
+
</div><table class="source_code">
|
|
1893
|
+
<tr>
|
|
1894
|
+
<td>
|
|
1895
|
+
<pre class="lines">
|
|
1896
|
+
|
|
1897
|
+
|
|
1898
|
+
170
|
|
1899
|
+
171
|
|
1900
|
+
172</pre>
|
|
1901
|
+
</td>
|
|
1902
|
+
<td>
|
|
1903
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 170</span>
|
|
1904
|
+
|
|
1905
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_parms'>parms</span>
|
|
1906
|
+
<span class='ivar'>@parms</span>
|
|
1907
|
+
<span class='kw'>end</span></pre>
|
|
1908
|
+
</td>
|
|
1909
|
+
</tr>
|
|
1910
|
+
</table>
|
|
1911
|
+
</div>
|
|
1912
|
+
|
|
1913
|
+
|
|
1914
|
+
<span id=""></span>
|
|
1915
|
+
<div class="method_details ">
|
|
1916
|
+
<h3 class="signature " id="population-instance_method">
|
|
1917
|
+
|
|
1918
|
+
- (<tt>Object</tt>) <strong>population</strong> <span class="extras">(readonly)</span>
|
|
1919
|
+
|
|
1920
|
+
|
|
1921
|
+
|
|
1922
|
+
|
|
1923
|
+
|
|
1924
|
+
</h3><div class="docstring">
|
|
1925
|
+
<div class="discussion">
|
|
1926
|
+
|
|
1927
|
+
<p>population object and class specification</p>
|
|
1928
|
+
|
|
1929
|
+
|
|
1930
|
+
</div>
|
|
1931
|
+
</div>
|
|
1932
|
+
<div class="tags">
|
|
1933
|
+
|
|
1934
|
+
|
|
1935
|
+
</div><table class="source_code">
|
|
1936
|
+
<tr>
|
|
1937
|
+
<td>
|
|
1938
|
+
<pre class="lines">
|
|
1939
|
+
|
|
1940
|
+
|
|
1941
|
+
173
|
|
1942
|
+
174
|
|
1943
|
+
175</pre>
|
|
1944
|
+
</td>
|
|
1945
|
+
<td>
|
|
1946
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 173</span>
|
|
1947
|
+
|
|
1948
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_population'>population</span>
|
|
1949
|
+
<span class='ivar'>@population</span>
|
|
1950
|
+
<span class='kw'>end</span></pre>
|
|
1951
|
+
</td>
|
|
1952
|
+
</tr>
|
|
1953
|
+
</table>
|
|
1954
|
+
</div>
|
|
1955
|
+
|
|
1956
|
+
|
|
1957
|
+
<span id=""></span>
|
|
1958
|
+
<div class="method_details ">
|
|
1959
|
+
<h3 class="signature " id="population_class-instance_method">
|
|
1960
|
+
|
|
1961
|
+
- (<tt>Object</tt>) <strong>population_class</strong> <span class="extras">(readonly)</span>
|
|
1962
|
+
|
|
1963
|
+
|
|
1964
|
+
|
|
1965
|
+
|
|
1966
|
+
|
|
1967
|
+
</h3><div class="docstring">
|
|
1968
|
+
<div class="discussion">
|
|
1969
|
+
|
|
1970
|
+
<p>population object and class specification</p>
|
|
1971
|
+
|
|
1972
|
+
|
|
1973
|
+
</div>
|
|
1974
|
+
</div>
|
|
1975
|
+
<div class="tags">
|
|
1976
|
+
|
|
1977
|
+
|
|
1978
|
+
</div><table class="source_code">
|
|
1979
|
+
<tr>
|
|
1980
|
+
<td>
|
|
1981
|
+
<pre class="lines">
|
|
1982
|
+
|
|
1983
|
+
|
|
1984
|
+
173
|
|
1985
|
+
174
|
|
1986
|
+
175</pre>
|
|
1987
|
+
</td>
|
|
1988
|
+
<td>
|
|
1989
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 173</span>
|
|
1990
|
+
|
|
1991
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_population_class'>population_class</span>
|
|
1992
|
+
<span class='ivar'>@population_class</span>
|
|
1993
|
+
<span class='kw'>end</span></pre>
|
|
1994
|
+
</td>
|
|
1995
|
+
</tr>
|
|
1996
|
+
</table>
|
|
1997
|
+
</div>
|
|
1998
|
+
|
|
1999
|
+
|
|
2000
|
+
<span id=""></span>
|
|
2001
|
+
<div class="method_details ">
|
|
2002
|
+
<h3 class="signature " id="population_history-instance_method">
|
|
2003
|
+
|
|
2004
|
+
- (<tt>Object</tt>) <strong>population_history</strong> <span class="extras">(readonly)</span>
|
|
2005
|
+
|
|
2006
|
+
|
|
2007
|
+
|
|
2008
|
+
|
|
2009
|
+
|
|
2010
|
+
</h3><div class="docstring">
|
|
2011
|
+
<div class="discussion">
|
|
2012
|
+
|
|
2013
|
+
<p>population object and class specification</p>
|
|
2014
|
+
|
|
2015
|
+
|
|
2016
|
+
</div>
|
|
2017
|
+
</div>
|
|
2018
|
+
<div class="tags">
|
|
2019
|
+
|
|
2020
|
+
|
|
2021
|
+
</div><table class="source_code">
|
|
2022
|
+
<tr>
|
|
2023
|
+
<td>
|
|
2024
|
+
<pre class="lines">
|
|
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|
+
|
|
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|
+
|
|
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|
+
173
|
|
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|
+
174
|
|
2029
|
+
175</pre>
|
|
2030
|
+
</td>
|
|
2031
|
+
<td>
|
|
2032
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 173</span>
|
|
2033
|
+
|
|
2034
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_population_history'>population_history</span>
|
|
2035
|
+
<span class='ivar'>@population_history</span>
|
|
2036
|
+
<span class='kw'>end</span></pre>
|
|
2037
|
+
</td>
|
|
2038
|
+
</tr>
|
|
2039
|
+
</table>
|
|
2040
|
+
</div>
|
|
2041
|
+
|
|
2042
|
+
|
|
2043
|
+
<span id="query_func=-instance_method"></span>
|
|
2044
|
+
<div class="method_details ">
|
|
2045
|
+
<h3 class="signature " id="query_func-instance_method">
|
|
2046
|
+
|
|
2047
|
+
- (<tt>Object</tt>) <strong>query_func</strong>
|
|
2048
|
+
|
|
2049
|
+
|
|
2050
|
+
|
|
2051
|
+
|
|
2052
|
+
|
|
2053
|
+
</h3><div class="docstring">
|
|
2054
|
+
<div class="discussion">
|
|
2055
|
+
|
|
2056
|
+
<p>Query function that Critters shall call.</p>
|
|
2057
|
+
|
|
2058
|
+
|
|
2059
|
+
</div>
|
|
2060
|
+
</div>
|
|
2061
|
+
<div class="tags">
|
|
2062
|
+
|
|
2063
|
+
|
|
2064
|
+
</div><table class="source_code">
|
|
2065
|
+
<tr>
|
|
2066
|
+
<td>
|
|
2067
|
+
<pre class="lines">
|
|
2068
|
+
|
|
2069
|
+
|
|
2070
|
+
187
|
|
2071
|
+
188
|
|
2072
|
+
189</pre>
|
|
2073
|
+
</td>
|
|
2074
|
+
<td>
|
|
2075
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 187</span>
|
|
2076
|
+
|
|
2077
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_query_func'>query_func</span>
|
|
2078
|
+
<span class='ivar'>@query_func</span>
|
|
2079
|
+
<span class='kw'>end</span></pre>
|
|
2080
|
+
</td>
|
|
2081
|
+
</tr>
|
|
2082
|
+
</table>
|
|
2083
|
+
</div>
|
|
2084
|
+
|
|
2085
|
+
|
|
2086
|
+
<span id="recurrence_func=-instance_method"></span>
|
|
2087
|
+
<div class="method_details ">
|
|
2088
|
+
<h3 class="signature " id="recurrence_func-instance_method">
|
|
2089
|
+
|
|
2090
|
+
- (<tt>Object</tt>) <strong>recurrence_func</strong>
|
|
2091
|
+
|
|
2092
|
+
|
|
2093
|
+
|
|
2094
|
+
|
|
2095
|
+
|
|
2096
|
+
</h3><div class="docstring">
|
|
2097
|
+
<div class="discussion">
|
|
2098
|
+
|
|
2099
|
+
<p>Recurrence function that Critters will yield to.</p>
|
|
2100
|
+
|
|
2101
|
+
|
|
2102
|
+
</div>
|
|
2103
|
+
</div>
|
|
2104
|
+
<div class="tags">
|
|
2105
|
+
|
|
2106
|
+
|
|
2107
|
+
</div><table class="source_code">
|
|
2108
|
+
<tr>
|
|
2109
|
+
<td>
|
|
2110
|
+
<pre class="lines">
|
|
2111
|
+
|
|
2112
|
+
|
|
2113
|
+
193
|
|
2114
|
+
194
|
|
2115
|
+
195</pre>
|
|
2116
|
+
</td>
|
|
2117
|
+
<td>
|
|
2118
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 193</span>
|
|
2119
|
+
|
|
2120
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_recurrence_func'>recurrence_func</span>
|
|
2121
|
+
<span class='ivar'>@recurrence_func</span>
|
|
2122
|
+
<span class='kw'>end</span></pre>
|
|
2123
|
+
</td>
|
|
2124
|
+
</tr>
|
|
2125
|
+
</table>
|
|
2126
|
+
</div>
|
|
2127
|
+
|
|
2128
|
+
|
|
2129
|
+
<span id="report_hook=-instance_method"></span>
|
|
2130
|
+
<div class="method_details ">
|
|
2131
|
+
<h3 class="signature " id="report_hook-instance_method">
|
|
2132
|
+
|
|
2133
|
+
- (<tt>Object</tt>) <strong>report_hook</strong>
|
|
2134
|
+
|
|
2135
|
+
|
|
2136
|
+
|
|
2137
|
+
|
|
2138
|
+
|
|
2139
|
+
</h3><div class="docstring">
|
|
2140
|
+
<div class="discussion">
|
|
2141
|
+
|
|
2142
|
+
<p>End run function to call at the end of each generational run Also
|
|
2143
|
+
report_hook to dump reports for the user, etc.</p>
|
|
2144
|
+
|
|
2145
|
+
|
|
2146
|
+
</div>
|
|
2147
|
+
</div>
|
|
2148
|
+
<div class="tags">
|
|
2149
|
+
|
|
2150
|
+
|
|
2151
|
+
</div><table class="source_code">
|
|
2152
|
+
<tr>
|
|
2153
|
+
<td>
|
|
2154
|
+
<pre class="lines">
|
|
2155
|
+
|
|
2156
|
+
|
|
2157
|
+
201
|
|
2158
|
+
202
|
|
2159
|
+
203</pre>
|
|
2160
|
+
</td>
|
|
2161
|
+
<td>
|
|
2162
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 201</span>
|
|
2163
|
+
|
|
2164
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_report_hook'>report_hook</span>
|
|
2165
|
+
<span class='ivar'>@report_hook</span>
|
|
2166
|
+
<span class='kw'>end</span></pre>
|
|
2167
|
+
</td>
|
|
2168
|
+
</tr>
|
|
2169
|
+
</table>
|
|
2170
|
+
</div>
|
|
2171
|
+
|
|
2172
|
+
|
|
2173
|
+
<span id=""></span>
|
|
2174
|
+
<div class="method_details ">
|
|
2175
|
+
<h3 class="signature " id="seq_num-instance_method">
|
|
2176
|
+
|
|
2177
|
+
- (<tt>Object</tt>) <strong>seq_num</strong> <span class="extras">(readonly)</span>
|
|
2178
|
+
|
|
2179
|
+
|
|
2180
|
+
|
|
2181
|
+
|
|
2182
|
+
|
|
2183
|
+
</h3><div class="docstring">
|
|
2184
|
+
<div class="discussion">
|
|
2185
|
+
|
|
2186
|
+
<p>current sequence number being evaluated</p>
|
|
2187
|
+
|
|
2188
|
+
|
|
2189
|
+
</div>
|
|
2190
|
+
</div>
|
|
2191
|
+
<div class="tags">
|
|
2192
|
+
|
|
2193
|
+
|
|
2194
|
+
</div><table class="source_code">
|
|
2195
|
+
<tr>
|
|
2196
|
+
<td>
|
|
2197
|
+
<pre class="lines">
|
|
2198
|
+
|
|
2199
|
+
|
|
2200
|
+
157
|
|
2201
|
+
158
|
|
2202
|
+
159</pre>
|
|
2203
|
+
</td>
|
|
2204
|
+
<td>
|
|
2205
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 157</span>
|
|
2206
|
+
|
|
2207
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_seq_num'>seq_num</span>
|
|
2208
|
+
<span class='ivar'>@seq_num</span>
|
|
2209
|
+
<span class='kw'>end</span></pre>
|
|
2210
|
+
</td>
|
|
2211
|
+
</tr>
|
|
2212
|
+
</table>
|
|
2213
|
+
</div>
|
|
2214
|
+
|
|
2215
|
+
|
|
2216
|
+
<span id="stop_on_fit_func=-instance_method"></span>
|
|
2217
|
+
<div class="method_details ">
|
|
2218
|
+
<h3 class="signature " id="stop_on_fit_func-instance_method">
|
|
2219
|
+
|
|
2220
|
+
- (<tt>Object</tt>) <strong>stop_on_fit_func</strong>
|
|
2221
|
+
|
|
2222
|
+
|
|
2223
|
+
|
|
2224
|
+
|
|
2225
|
+
|
|
2226
|
+
</h3><div class="docstring">
|
|
2227
|
+
<div class="discussion">
|
|
2228
|
+
|
|
2229
|
+
<p>Compare function for fitness Cost function for integrating in the cost to
|
|
2230
|
+
the fitness scalar.</p>
|
|
2231
|
+
|
|
2232
|
+
|
|
2233
|
+
</div>
|
|
2234
|
+
</div>
|
|
2235
|
+
<div class="tags">
|
|
2236
|
+
|
|
2237
|
+
|
|
2238
|
+
</div><table class="source_code">
|
|
2239
|
+
<tr>
|
|
2240
|
+
<td>
|
|
2241
|
+
<pre class="lines">
|
|
2242
|
+
|
|
2243
|
+
|
|
2244
|
+
197
|
|
2245
|
+
198
|
|
2246
|
+
199</pre>
|
|
2247
|
+
</td>
|
|
2248
|
+
<td>
|
|
2249
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 197</span>
|
|
2250
|
+
|
|
2251
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_stop_on_fit_func'>stop_on_fit_func</span>
|
|
2252
|
+
<span class='ivar'>@stop_on_fit_func</span>
|
|
2253
|
+
<span class='kw'>end</span></pre>
|
|
2254
|
+
</td>
|
|
2255
|
+
</tr>
|
|
2256
|
+
</table>
|
|
2257
|
+
</div>
|
|
2258
|
+
|
|
2259
|
+
|
|
2260
|
+
<span id="verbosity=-instance_method"></span>
|
|
2261
|
+
<div class="method_details ">
|
|
2262
|
+
<h3 class="signature " id="verbosity-instance_method">
|
|
2263
|
+
|
|
2264
|
+
- (<tt>Object</tt>) <strong>verbosity</strong>
|
|
2265
|
+
|
|
2266
|
+
|
|
2267
|
+
|
|
2268
|
+
|
|
2269
|
+
|
|
2270
|
+
</h3><div class="docstring">
|
|
2271
|
+
<div class="discussion">
|
|
2272
|
+
|
|
2273
|
+
<p>Global verbosity level: 1 - normal (the default) 2 - really verbose 3 -
|
|
2274
|
+
maximally verbose Use in conjunction with log.debug</p>
|
|
2275
|
+
|
|
2276
|
+
|
|
2277
|
+
</div>
|
|
2278
|
+
</div>
|
|
2279
|
+
<div class="tags">
|
|
2280
|
+
|
|
2281
|
+
|
|
2282
|
+
</div><table class="source_code">
|
|
2283
|
+
<tr>
|
|
2284
|
+
<td>
|
|
2285
|
+
<pre class="lines">
|
|
2286
|
+
|
|
2287
|
+
|
|
2288
|
+
184
|
|
2289
|
+
185
|
|
2290
|
+
186</pre>
|
|
2291
|
+
</td>
|
|
2292
|
+
<td>
|
|
2293
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 184</span>
|
|
2294
|
+
|
|
2295
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_verbosity'>verbosity</span>
|
|
2296
|
+
<span class='ivar'>@verbosity</span>
|
|
2297
|
+
<span class='kw'>end</span></pre>
|
|
2298
|
+
</td>
|
|
2299
|
+
</tr>
|
|
2300
|
+
</table>
|
|
2301
|
+
</div>
|
|
2302
|
+
|
|
2303
|
+
</div>
|
|
2304
|
+
|
|
2305
|
+
|
|
2306
|
+
<div id="instance_method_details" class="method_details_list">
|
|
2307
|
+
<h2>Instance Method Details</h2>
|
|
2308
|
+
|
|
2309
|
+
|
|
2310
|
+
<div class="method_details first">
|
|
2311
|
+
<h3 class="signature first" id="gaussian-instance_method">
|
|
2312
|
+
|
|
2313
|
+
- (<tt>Object</tt>) <strong>gaussian</strong>
|
|
2314
|
+
|
|
2315
|
+
|
|
2316
|
+
|
|
2317
|
+
|
|
2318
|
+
|
|
2319
|
+
</h3><table class="source_code">
|
|
2320
|
+
<tr>
|
|
2321
|
+
<td>
|
|
2322
|
+
<pre class="lines">
|
|
2323
|
+
|
|
2324
|
+
|
|
2325
|
+
368</pre>
|
|
2326
|
+
</td>
|
|
2327
|
+
<td>
|
|
2328
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 368</span>
|
|
2329
|
+
|
|
2330
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_gaussian'>gaussian</span> <span class='semicolon'>;</span> <span class='ivar'>@gaussian</span><span class='period'>.</span><span class='lparen'>(</span><span class='rparen'>)</span> <span class='semicolon'>;</span> <span class='kw'>end</span></pre>
|
|
2331
|
+
</td>
|
|
2332
|
+
</tr>
|
|
2333
|
+
</table>
|
|
2334
|
+
</div>
|
|
2335
|
+
|
|
2336
|
+
<div class="method_details ">
|
|
2337
|
+
<h3 class="signature " id="new_innovation-instance_method">
|
|
2338
|
+
|
|
2339
|
+
- (<tt>Object</tt>) <strong>new_innovation</strong>
|
|
2340
|
+
|
|
2341
|
+
|
|
2342
|
+
|
|
2343
|
+
|
|
2344
|
+
|
|
2345
|
+
</h3><table class="source_code">
|
|
2346
|
+
<tr>
|
|
2347
|
+
<td>
|
|
2348
|
+
<pre class="lines">
|
|
2349
|
+
|
|
2350
|
+
|
|
2351
|
+
367</pre>
|
|
2352
|
+
</td>
|
|
2353
|
+
<td>
|
|
2354
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 367</span>
|
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<span class='kw'>def</span> <span class='id identifier rubyid_new_innovation'>new_innovation</span> <span class='semicolon'>;</span> <span class='ivar'>@glob_innov_num</span> <span class='op'>+=</span> <span class='int'>1</span><span class='semicolon'>;</span> <span class='kw'>end</span></pre>
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<div class="method_details ">
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<h3 class="signature " id="run-instance_method">
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- (<tt>Object</tt>) <strong>run</strong>
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</h3><div class="docstring">
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<div class="discussion">
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<p>Run this evolution.</p>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/rubyneat.rb', line 371</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_run'>run</span>
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<span class='id identifier rubyid_pre_run_initialize'>pre_run_initialize</span>
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<span class='lparen'>(</span><span class='int'>1</span><span class='op'>..</span><span class='ivar'>@parms</span><span class='period'>.</span><span class='id identifier rubyid_max_generations'>max_generations</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_gen_number'>gen_number</span><span class='op'>|</span>
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<span class='ivar'>@generation_num</span> <span class='op'>=</span> <span class='id identifier rubyid_gen_number'>gen_number</span>
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<span class='ivar'>@population_history</span> <span class='op'><<</span> <span class='kw'>unless</span> <span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
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<span class='ivar'>@population</span>
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<span class='kw'>else</span>
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<span class='ivar'>@population</span> <span class='op'>=</span> <span class='ivar'>@population_class</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span>
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<span class='kw'>end</span>
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<span class='ivar'>@population_history</span><span class='period'>.</span><span class='id identifier rubyid_shift'>shift</span> <span class='kw'>unless</span> <span class='ivar'>@population_history</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span> <span class='op'><=</span> <span class='ivar'>@parms</span><span class='period'>.</span><span class='id identifier rubyid_max_population_history'>max_population_history</span>
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<span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_mutate!'>mutate!</span>
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<span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_express!'>express!</span>
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<span class='comment'>## Evaluate population
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</span> <span class='ivar'>@evaluator</span><span class='period'>.</span><span class='id identifier rubyid_ready_for_evaluation'>ready_for_evaluation</span> <span class='ivar'>@population</span>
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<span class='lparen'>(</span><span class='ivar'>@parms</span><span class='period'>.</span><span class='id identifier rubyid_start_sequence_at'>start_sequence_at</span> <span class='op'>..</span> <span class='ivar'>@parms</span><span class='period'>.</span><span class='id identifier rubyid_end_sequence_at'>end_sequence_at</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_snum'>snum</span><span class='op'>|</span>
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<span class='ivar'>@seq_num</span> <span class='op'>=</span> <span class='id identifier rubyid_snum'>snum</span>
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<span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span>
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<span class='kw'>end</span>
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<span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_analyze!'>analyze!</span>
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<span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_speciate!'>speciate!</span>
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<span class='gvar'>$log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_dump_s'>dump_s</span> <span class='kw'>unless</span> <span class='ivar'>@verbosity</span> <span class='op'><</span> <span class='int'>3</span>
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<span class='id identifier rubyid_new_pop'>new_pop</span> <span class='op'>=</span> <span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_evolve'>evolve</span>
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<span class='comment'>## Report hook for evaluation
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</span> <span class='ivar'>@report_hook</span><span class='period'>.</span><span class='lparen'>(</span><span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_report'>report</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='ivar'>@report_hook</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
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<span class='comment'>## Exit if fitness criteria is reached
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</span> <span class='comment'>#FIXME handle this exit condition better!!!!!
|
|
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</span> <span class='id identifier rubyid_exit'>exit</span> <span class='kw'>if</span> <span class='ivar'>@stop_on_fit_func</span><span class='period'>.</span><span class='lparen'>(</span><span class='ivar'>@population</span><span class='period'>.</span><span class='id identifier rubyid_report'>report</span><span class='lbracket'>[</span><span class='symbol'>:fitness</span><span class='rbracket'>]</span><span class='comma'>,</span> <span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='ivar'>@stop_on_fit_func</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
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<span class='comment'>## Evolve population
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</span> <span class='ivar'>@population</span> <span class='op'>=</span> <span class='id identifier rubyid_new_pop'>new_pop</span>
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<span class='comment'>## Finish up this run
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|
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</span> <span class='ivar'>@end_run_func</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='ivar'>@end_run_func</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
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<span class='kw'>end</span>
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<span class='kw'>end</span></pre>
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<div id="footer">
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Generated on Sun Apr 13 15:54:03 2014 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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0.8.7.4 (ruby-2.1.1).
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