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rubyneat 0.3.5.alpha.2

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Files changed (261) hide show

checksums.yaml +7 -0
data/.directory +4 -0
data/.gitignore.orig +20 -0
data/.idea/.name +1 -0
data/.idea/.rakeTasks +7 -0
data/.idea/dictionaries/trader.xml +3 -0
data/.idea/encodings.xml +5 -0
data/.idea/misc.xml +5 -0
data/.idea/modules.xml +9 -0
data/.idea/rubyneat.iml +197 -0
data/.idea/runConfigurations/invpend_neat.xml +26 -0
data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
data/.idea/runConfigurations/xor_neat.xml +26 -0
data/.idea/runConfigurations/xordebug_neat.xml +24 -0
data/.idea/runConfigurations/xorsin_neat.xml +24 -0
data/.idea/scopes/scope_settings.xml +5 -0
data/.idea/vcs.xml +7 -0
data/.idea/workspace.xml +1124 -0
data/.semver +5 -0
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data/.yardoc/object_types +0 -0
data/.yardoc/objects/root.dat +0 -0
data/.yardoc/proxy_types +0 -0
data/Gemfile +32 -0
data/Gemfile.lock +135 -0
data/Gemfile.lock.orig +147 -0
data/Guardfile +8 -0
data/Rakefile +61 -0
data/bin/neat +83 -0
data/config/application.rb +5 -0
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data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
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data/lib/rubyneat/critter.rb +374 -0
data/lib/rubyneat/default_neat.rb +10 -0
data/lib/rubyneat/dsl.rb +130 -0
data/lib/rubyneat/evaluator.rb +51 -0
data/lib/rubyneat/evolver.rb +315 -0
data/lib/rubyneat/expressor.rb +110 -0
data/lib/rubyneat/graph.rb +95 -0
data/lib/rubyneat/neuron.rb +152 -0
data/lib/rubyneat/population.rb +227 -0
data/lib/rubyneat/rubyneat.rb +429 -0
data/lib/rubyneat.rb +8 -0
data/neater/invpend_neat.rb +150 -0
data/neater/rnlib/inverted_pendulum.rb +380 -0
data/neater/rnlib/xor.rb +10 -0
data/neater/sigdebug_neat.rb +136 -0
data/neater/xor_neat.rb +137 -0
data/neater/xoranalog_neat.rb +138 -0
data/neater/xorsin_neat.rb +143 -0
data/projectFilesBackup/.idea/rubyneat.iml +180 -0
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data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
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data/rdoc/NEAT/Controller.html +729 -0
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data/rdoc/NEAT/Critter/Genotype.html +735 -0
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data/rdoc/NEAT/Critter.html +489 -0
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data/rdoc/NEAT/Evolver.html +891 -0
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data/rdoc/NEAT/Graph/GraphException.html +105 -0
data/rdoc/NEAT/Graph.html +263 -0
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data/rdoc/Object.html +384 -0
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data/rdoc/SDL/Event2.html +98 -0
data/rdoc/SDL.html +98 -0
data/rdoc/Vector.html +195 -0
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data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
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data/rdoc/doc/NEAT/Controller_html.html +2212 -0
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data/rdoc/doc/NEAT/DSL_html.html +1349 -0
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data/rdoc/doc/NEAT/Graph_html.html +527 -0
data/rdoc/doc/NEAT/NeatException_html.html +299 -0
data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
data/rdoc/doc/NEAT/Operator_html.html +337 -0
data/rdoc/doc/NEAT/Population_html.html +1795 -0
data/rdoc/doc/NEAT/Trait_html.html +344 -0
data/rdoc/doc/NEAT_html.html +736 -0
data/rdoc/doc/_index_html.html +559 -0
data/rdoc/doc/class_list_html.html +369 -0
data/rdoc/doc/css/common_css.html +188 -0
data/rdoc/doc/css/full_list_css.html +243 -0
data/rdoc/doc/css/style_css.html +530 -0
data/rdoc/doc/file_list_html.html +240 -0
data/rdoc/doc/frames_html.html +217 -0
data/rdoc/doc/index_html.html +559 -0
data/rdoc/doc/js/app_js.html +423 -0
data/rdoc/doc/js/full_list_js.html +372 -0
data/rdoc/doc/js/jquery_js.html +1536 -0
data/rdoc/doc/method_list_html.html +1375 -0
data/rdoc/doc/top-level-namespace_html.html +317 -0
data/rdoc/fonts/Lato-Light.ttf +0 -0
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data/rdoc/fonts/Lato-Regular.ttf +0 -0
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data/rdoc/fonts.css +167 -0
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data/rdoc/index.html +282 -0
data/rdoc/js/darkfish.js +140 -0
data/rdoc/js/jquery.js +18 -0
data/rdoc/js/navigation.js +142 -0
data/rdoc/js/search.js +109 -0
data/rdoc/js/search_index.js +1 -0
data/rdoc/js/searcher.js +228 -0
data/rdoc/rdoc.css +580 -0
data/rdoc/rubyneat_gemspec.html +387 -0
data/rdoc/table_of_contents.html +2502 -0
data/rdoc/xordebug_log.html +170598 -0
data/rdoc/xorsin_log.html +22569 -0
data/rubyneat.gemspec +347 -0
data/rubyneat.gemspec.orig +375 -0
data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
metadata +555 -0

data/doc/NEAT/Graph/DependencyResolver.html ADDED Viewed

@@ -0,0 +1,478 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Class: NEAT::Graph::DependencyResolver
+    &mdash; Documentation by YARD 0.8.7.4
+</title>
+  <link rel="stylesheet" href="../../css/style.css" type="text/css" charset="utf-8" />
+  <link rel="stylesheet" href="../../css/common.css" type="text/css" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  hasFrames = window.top.frames.main ? true : false;
+  relpath = '../../';
+  framesUrl = "../../frames.html#!NEAT/Graph/DependencyResolver.html";
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../js/app.js"></script>
+  </head>
+  <body>
+    <div id="header">
+      <div id="menu">
+    <a href="../../_index.html">Index (D)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../NEAT.html" title="NEAT (module)">NEAT</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Graph.html" title="NEAT::Graph (module)">Graph</a></span></span>
+     &raquo;
+    <span class="title">DependencyResolver</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a class="full_list_link" id="class_list_link"
+        href="../../class_list.html">
+      Class List
+    </a>
+    <a class="full_list_link" id="method_list_link"
+        href="../../method_list.html">
+      Method List
+    </a>
+    <a class="full_list_link" id="file_list_link"
+        href="../../file_list.html">
+      File List
+    </a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Class: NEAT::Graph::DependencyResolver
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName"><span class='object_link'><a href="../NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></span>
+        <ul class="fullTree">
+          <li>Object</li>
+            <li class="next"><span class='object_link'><a href="../NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></li>
+            <li class="next">NEAT::Graph::DependencyResolver</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/rubyneat/graph.rb</dd>
+</dl>
+<div class="clear"></div>
+<h2>Overview</h2><div class="docstring">
+  <div class="discussion">
+<p>Create an instantiation of this and pass it a list of nodes to resolve.</p>
+  </div>
+</div>
+<div class="tags">
+</div>
+  <h2>Instance Attribute Summary</h2>
+  <h3 class="inherited">Attributes inherited from <span class='object_link'><a href="../NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="../NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="../NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
+    <h2>
+      Class Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#%5B%5D-class_method" title="[] (class method)">+ (Object) <strong>[]</strong>(*outs) </a>
+  </span>
+    <span class="summary_desc"><div class='inline'>
+<p>Create a DependencyResolver from either an array of outputs or a parameter
+list of outputs.</p>
+</div></span>
+</li>
+    </ul>
+    <h2>
+      Instance Method Summary
+      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
+    </h2>
+    <ul class="summary">
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#initialize-instance_method" title="#initialize (instance method)">- (DependencyResolver) <strong>initialize</strong>(outputs, &amp;block) </a>
+  </span>
+    <span class="note title constructor">constructor</span>
+    <span class="summary_desc"><div class='inline'>
+<p>Given a list of output nodes, we shall work backwards from them to resolve
+their dependencies.</p>
+</div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#resolve-instance_method" title="#resolve (instance method)">- (Object) <strong>resolve</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'>
+<p>Resolve dependencies, and return [dependency_list, circular_ref_node_list]
+Note that circular_ref_node_list shall be nil if there are no
+dependencies!.</p>
+</div></span>
+</li>
+        <li class="public ">
+  <span class="summary_signature">
+      <a href="#resolve%21-instance_method" title="#resolve! (instance method)">- (Object) <strong>resolve!</strong> </a>
+  </span>
+    <span class="summary_desc"><div class='inline'>
+<p>Throw an exception if dependencies are found.</p>
+</div></span>
+</li>
+    </ul>
+  <h3 class="inherited">Methods inherited from <span class='object_link'><a href="../NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
+  <p class="inherited"><span class='object_link'><a href="../NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="../NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="../NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
+  <div id="constructor_details" class="method_details_list">
+  <h2>Constructor Details</h2>
+    <div class="method_details first">
+  <h3 class="signature first" id="initialize-instance_method">
+    - (<tt><span class='object_link'><a href="" title="NEAT::Graph::DependencyResolver (class)">DependencyResolver</a></span></tt>) <strong>initialize</strong>(outputs, &amp;block)
+</h3><div class="docstring">
+  <div class="discussion">
+<p>Given a list of output nodes, we shall work backwards from them to resolve
+their dependencies.</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+40
+41
+42
+43
+44</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/rubyneat/graph.rb', line 40</span>
+<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_outputs'>outputs</span><span class='comma'>,</span> <span class='op'>&amp;</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
+  <span class='ivar'>@outputs</span> <span class='op'>=</span> <span class='id identifier rubyid_outputs'>outputs</span>
+  <span class='kw'>super</span>
+  <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+</div>
+  <div id="class_method_details" class="method_details_list">
+    <h2>Class Method Details</h2>
+      <div class="method_details first">
+  <h3 class="signature first" id="[]-class_method">
+    + (<tt>Object</tt>) <strong>[]</strong>(*outs)
+</h3><div class="docstring">
+  <div class="discussion">
+<p>Create a DependencyResolver from either an array of outputs or a parameter
+list of outputs.</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+48
+49
+50
+51</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/rubyneat/graph.rb', line 48</span>
+<span class='kw'>def</span> <span class='kw'>self</span><span class='period'>.</span><span class='op'>[]</span><span class='lparen'>(</span><span class='op'>*</span><span class='id identifier rubyid_outs'>outs</span><span class='rparen'>)</span>
+  <span class='id identifier rubyid_outs'>outs</span> <span class='op'>=</span> <span class='id identifier rubyid_outs'>outs</span><span class='period'>.</span><span class='id identifier rubyid_first'>first</span> <span class='kw'>if</span> <span class='id identifier rubyid_outs'>outs</span><span class='period'>.</span><span class='id identifier rubyid_first'>first</span><span class='period'>.</span><span class='id identifier rubyid_kind_of?'>kind_of?</span> <span class='const'>Array</span>
+  <span class='const'>DependencyResolver</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span> <span class='id identifier rubyid_outs'>outs</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+  <div id="instance_method_details" class="method_details_list">
+    <h2>Instance Method Details</h2>
+      <div class="method_details first">
+  <h3 class="signature first" id="resolve-instance_method">
+    - (<tt>Object</tt>) <strong>resolve</strong>
+</h3><div class="docstring">
+  <div class="discussion">
+<p>Resolve dependencies, and return [dependency_list, circular_ref_node_list]
+Note that circular_ref_node_list shall be nil if there are no dependencies!</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+56
+57
+58
+59
+60
+61
+62
+63
+64</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/rubyneat/graph.rb', line 56</span>
+<span class='kw'>def</span> <span class='id identifier rubyid_resolve'>resolve</span>
+  <span class='ivar'>@resolved</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
+  <span class='ivar'>@unresolved</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
+  <span class='ivar'>@circular</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='rbracket'>]</span>
+  <span class='ivar'>@outputs</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_onode'>onode</span><span class='op'>|</span>
+    <span class='id identifier rubyid_rdep'>rdep</span> <span class='id identifier rubyid_onode'>onode</span>
+  <span class='kw'>end</span>
+  <span class='lbracket'>[</span><span class='ivar'>@resolved</span><span class='comma'>,</span> <span class='ivar'>@circular</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span> <span class='op'>?</span> <span class='kw'>nil</span> <span class='op'>:</span> <span class='ivar'>@circular</span><span class='rbracket'>]</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+      <div class="method_details ">
+  <h3 class="signature " id="resolve!-instance_method">
+    - (<tt>Object</tt>) <strong>resolve!</strong>
+</h3><div class="docstring">
+  <div class="discussion">
+<p>Throw an exception if dependencies are found. We only return the dependency
+list since we throw an exception on circular dependencies.</p>
+  </div>
+</div>
+<div class="tags">
+</div><table class="source_code">
+  <tr>
+    <td>
+      <pre class="lines">
+69
+70
+71
+72
+73</pre>
+    </td>
+    <td>
+      <pre class="code"><span class="info file"># File 'lib/rubyneat/graph.rb', line 69</span>
+<span class='kw'>def</span> <span class='id identifier rubyid_resolve!'>resolve!</span>
+  <span class='id identifier rubyid_dl'>dl</span><span class='comma'>,</span> <span class='id identifier rubyid_cl'>cl</span> <span class='op'>=</span> <span class='id identifier rubyid_resolve'>resolve</span>
+  <span class='id identifier rubyid_raise'>raise</span> <span class='const'>GraphException</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>Circular Dependency Detected: %s</span><span class='tstring_end'>&quot;</span></span> <span class='op'>%</span> <span class='id identifier rubyid_cl'>cl</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_cl'>cl</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
+  <span class='id identifier rubyid_dl'>dl</span>
+<span class='kw'>end</span></pre>
+    </td>
+  </tr>
+</table>
+</div>
+  </div>
+</div>
+    <div id="footer">
+  Generated on Sun Apr 13 15:54:02 2014 by
+  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
+  0.8.7.4 (ruby-2.1.1).
+</div>
+  </body>
+</html>

data/doc/NEAT/Graph/GraphException.html ADDED Viewed

@@ -0,0 +1,123 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
+  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+  <head>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+<title>
+  Exception: NEAT::Graph::GraphException
+    &mdash; Documentation by YARD 0.8.7.4
+</title>
+  <link rel="stylesheet" href="../../css/style.css" type="text/css" charset="utf-8" />
+  <link rel="stylesheet" href="../../css/common.css" type="text/css" charset="utf-8" />
+<script type="text/javascript" charset="utf-8">
+  hasFrames = window.top.frames.main ? true : false;
+  relpath = '../../';
+  framesUrl = "../../frames.html#!NEAT/Graph/GraphException.html";
+</script>
+  <script type="text/javascript" charset="utf-8" src="../../js/jquery.js"></script>
+  <script type="text/javascript" charset="utf-8" src="../../js/app.js"></script>
+  </head>
+  <body>
+    <div id="header">
+      <div id="menu">
+    <a href="../../_index.html">Index (G)</a> &raquo;
+    <span class='title'><span class='object_link'><a href="../../NEAT.html" title="NEAT (module)">NEAT</a></span></span> &raquo; <span class='title'><span class='object_link'><a href="../Graph.html" title="NEAT::Graph (module)">Graph</a></span></span>
+     &raquo;
+    <span class="title">GraphException</span>
+  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
+</div>
+      <div id="search">
+    <a class="full_list_link" id="class_list_link"
+        href="../../class_list.html">
+      Class List
+    </a>
+    <a class="full_list_link" id="method_list_link"
+        href="../../method_list.html">
+      Method List
+    </a>
+    <a class="full_list_link" id="file_list_link"
+        href="../../file_list.html">
+      File List
+    </a>
+</div>
+      <div class="clear"></div>
+    </div>
+    <iframe id="search_frame"></iframe>
+    <div id="content"><h1>Exception: NEAT::Graph::GraphException
+</h1>
+<dl class="box">
+    <dt class="r1">Inherits:</dt>
+    <dd class="r1">
+      <span class="inheritName">Exception</span>
+        <ul class="fullTree">
+          <li>Object</li>
+            <li class="next">Exception</li>
+            <li class="next">NEAT::Graph::GraphException</li>
+        </ul>
+        <a href="#" class="inheritanceTree">show all</a>
+      </dd>
+    <dt class="r2 last">Defined in:</dt>
+    <dd class="r2 last">lib/rubyneat/graph.rb</dd>
+</dl>
+<div class="clear"></div>
+</div>
+    <div id="footer">
+  Generated on Sun Apr 13 15:54:02 2014 by
+  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
+  0.8.7.4 (ruby-2.1.1).
+</div>
+  </body>
+</html>