rubyneat 0.3.5.alpha.2
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<p>fitness function calls the block with 2 vectors or two hashes, input and
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output vectors of the critter being evaluated for fitness, as well as a
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sequence number that can be used to index what the actual output should be.</p>
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<p>This is used to handle the details of our DSL.</p>
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returns an array or hash of parameters that will be given to the input
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nodes.</p>
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<span class="summary_desc"><div class='inline'></div></span>
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<a href="#report-instance_method" title="#report (instance method)">- (Object) <strong>report</strong>(&block) </a>
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<span class="summary_desc"><div class='inline'>
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<p>Report on evaluations.</p>
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<a href="#run_engine-instance_method" title="#run_engine (instance method)">- (Object) <strong>run_engine</strong>(&block) </a>
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<span class="summary_desc"><div class='inline'>
|
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<p>Run the engine.</p>
|
|
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|
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|
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<span class="summary_signature">
|
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|
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<a href="#simple_fitness_error-instance_method" title="#simple_fitness_error (instance method)">- (Object) <strong>simple_fitness_error</strong>(v1, v2) </a>
|
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|
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|
|
401
|
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<span class="summary_desc"><div class='inline'>
|
|
402
|
+
<p>Helper function to do a simple fitness calculation on the basis of the sum
|
|
403
|
+
of the square of the diffences of the element in the two vectors.</p>
|
|
404
|
+
</div></span>
|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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<span class="summary_signature">
|
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|
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|
|
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|
+
<a href="#stop_on_fitness-instance_method" title="#stop_on_fitness (instance method)">- (Object) <strong>stop_on_fitness</strong>(&block) </a>
|
|
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|
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|
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|
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|
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|
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|
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</span>
|
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|
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|
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|
|
426
|
+
<span class="summary_desc"><div class='inline'>
|
|
427
|
+
<p>Stop the progression once the fitness criteria is reached for the most fit
|
|
428
|
+
critter.</p>
|
|
429
|
+
</div></span>
|
|
430
|
+
|
|
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|
+
</li>
|
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|
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|
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<li class="public ">
|
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|
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<span class="summary_signature">
|
|
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|
+
|
|
437
|
+
<a href="#uncondition_boolean_vector-instance_method" title="#uncondition_boolean_vector (instance method)">- (Object) <strong>uncondition_boolean_vector</strong>(vec, sig = :tanh) </a>
|
|
438
|
+
|
|
439
|
+
|
|
440
|
+
|
|
441
|
+
</span>
|
|
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|
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|
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|
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|
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|
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449
|
+
|
|
450
|
+
|
|
451
|
+
<span class="summary_desc"><div class='inline'>
|
|
452
|
+
<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
|
|
453
|
+
false FIXME we need a better discrimination function.</p>
|
|
454
|
+
</div></span>
|
|
455
|
+
|
|
456
|
+
</li>
|
|
457
|
+
|
|
458
|
+
|
|
459
|
+
</ul>
|
|
460
|
+
|
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461
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|
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|
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|
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|
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|
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|
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|
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469
|
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|
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|
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|
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|
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|
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|
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+
|
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475
|
+
|
|
476
|
+
|
|
477
|
+
|
|
478
|
+
<h3 class="inherited">Methods included from <span class='object_link'><a href="../NEAT.html" title="NEAT (module)">NEAT</a></span></h3>
|
|
479
|
+
<p class="inherited"><span class='object_link'><a href="../NEAT.html#controller-class_method" title="NEAT.controller (method)">controller</a></span>, <span class='object_link'><a href="../NEAT.html#controller%3D-class_method" title="NEAT.controller= (method)">controller=</a></span>, <span class='object_link'><a href="../NEAT.html#create_controller-class_method" title="NEAT.create_controller (method)">create_controller</a></span>, <span class='object_link'><a href="../NEAT.html#dpp-class_method" title="NEAT.dpp (method)">dpp</a></span>, <span class='object_link'><a href="../NEAT.html#gaussian-class_method" title="NEAT.gaussian (method)">gaussian</a></span>, <span class='object_link'><a href="../NEAT.html#new_innovation-class_method" title="NEAT.new_innovation (method)">new_innovation</a></span>, <span class='object_link'><a href="../NEAT.html#random_name_generator-class_method" title="NEAT.random_name_generator (method)">random_name_generator</a></span></p>
|
|
480
|
+
<div id="method_missing_details" class="method_details_list">
|
|
481
|
+
<h2>Dynamic Method Handling</h2>
|
|
482
|
+
<p class="notice this">
|
|
483
|
+
This class handles dynamic methods through the <tt>method_missing</tt> method
|
|
484
|
+
|
|
485
|
+
</p>
|
|
486
|
+
|
|
487
|
+
<div class="method_details first">
|
|
488
|
+
<h3 class="signature first" id="method_missing-instance_method">
|
|
489
|
+
|
|
490
|
+
- (<tt>Object</tt>) <strong>method_missing</strong>(m, *args, &block)
|
|
491
|
+
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
|
|
495
|
+
|
|
496
|
+
</h3><div class="docstring">
|
|
497
|
+
<div class="discussion">
|
|
498
|
+
|
|
499
|
+
<p>This is used to handle the details of our DSL.</p>
|
|
500
|
+
|
|
501
|
+
|
|
502
|
+
</div>
|
|
503
|
+
</div>
|
|
504
|
+
<div class="tags">
|
|
505
|
+
|
|
506
|
+
|
|
507
|
+
</div><table class="source_code">
|
|
508
|
+
<tr>
|
|
509
|
+
<td>
|
|
510
|
+
<pre class="lines">
|
|
511
|
+
|
|
512
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|
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513
|
+
114
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115
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116
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121
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521
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122
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|
522
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+
123
|
|
523
|
+
124</pre>
|
|
524
|
+
</td>
|
|
525
|
+
<td>
|
|
526
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 114</span>
|
|
527
|
+
|
|
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|
+
<span class='kw'>def</span> <span class='id identifier rubyid_method_missing'>method_missing</span><span class='lparen'>(</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='op'>*</span><span class='id identifier rubyid_args'>args</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
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|
+
<span class='comment'># we want to catch parameters settings here.
|
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</span> <span class='kw'>if</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_respond_to?'>respond_to?</span> <span class='lparen'>(</span><span class='id identifier rubyid_assignment'>assignment</span> <span class='op'>=</span> <span class='lparen'>(</span><span class='id identifier rubyid_m'>m</span><span class='period'>.</span><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>'</span><span class='tstring_content'>=</span><span class='tstring_end'>'</span></span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_to_sym'>to_sym</span><span class='rparen'>)</span>
|
|
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|
+
<span class='id identifier rubyid_raise'>raise</span> <span class='const'>NeatException</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Missing value(s) to %s</span><span class='tstring_end'>"</span></span> <span class='op'>%</span> <span class='id identifier rubyid_m'>m</span><span class='rparen'>)</span> <span class='kw'>if</span> <span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span>
|
|
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|
+
<span class='id identifier rubyid_val'>val</span> <span class='op'>=</span> <span class='lparen'>(</span><span class='id identifier rubyid_args'>args</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span> <span class='op'>==</span> <span class='int'>1</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='id identifier rubyid_args'>args</span><span class='lbracket'>[</span><span class='int'>0</span><span class='rbracket'>]</span> <span class='op'>:</span> <span class='id identifier rubyid_args'>args</span>
|
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|
+
<span class='gvar'>$log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='lbrace'>{</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>Caught method %s with parameter of %s</span><span class='tstring_end'>"</span></span> <span class='op'>%</span> <span class='lbracket'>[</span><span class='id identifier rubyid_assignment'>assignment</span><span class='comma'>,</span> <span class='id identifier rubyid_val'>val</span><span class='rbracket'>]</span> <span class='rbrace'>}</span>
|
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<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_send'>send</span><span class='lparen'>(</span><span class='id identifier rubyid_assignment'>assignment</span><span class='comma'>,</span> <span class='id identifier rubyid_val'>val</span><span class='rparen'>)</span>
|
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<span class='kw'>else</span>
|
|
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<span class='kw'>super</span>
|
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<span class='kw'>end</span>
|
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<span class='kw'>end</span></pre>
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<div id="instance_method_details" class="method_details_list">
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<h2>Instance Method Details</h2>
|
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+
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<div class="method_details first">
|
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<h3 class="signature first" id="compare-instance_method">
|
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|
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- (<tt>Object</tt>) <strong>compare</strong>(&block)
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|
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<div class="discussion">
|
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|
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<p>Fitness ordering – given 2 fitness numbers, use the <=> to compare
|
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|
+
them (or the equivalent, following the +1, 0, -1 that is in the sense of
|
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<=>)</p>
|
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|
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</div><table class="source_code">
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 63</span>
|
|
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|
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|
|
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|
+
<span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
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|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
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|
+
<span class='kw'>end</span></pre>
|
|
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|
+
</td>
|
|
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|
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</div>
|
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|
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|
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|
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<div class="method_details ">
|
|
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|
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<h3 class="signature " id="condition_boolean_vector-instance_method">
|
|
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|
+
|
|
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|
+
- (<tt>Object</tt>) <strong>condition_boolean_vector</strong>(vec, sig = :tanh)
|
|
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|
+
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|
+
|
|
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|
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+
|
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|
+
</h3><div class="docstring">
|
|
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|
+
<div class="discussion">
|
|
605
|
+
|
|
606
|
+
<p>Helper function to Condition boolean vectors to be +1 if true, -1 if false
|
|
607
|
+
(0 if sigmoid)</p>
|
|
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|
+
|
|
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|
+
|
|
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|
+
</div>
|
|
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|
+
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|
+
<div class="tags">
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|
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</div><table class="source_code">
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|
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<pre class="lines">
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|
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|
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83</pre>
|
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|
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|
|
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|
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<td>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 81</span>
|
|
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|
+
|
|
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|
+
<span class='kw'>def</span> <span class='id identifier rubyid_condition_boolean_vector'>condition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
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|
+
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_b'>b</span> <span class='op'>?</span> <span class='int'>1</span> <span class='op'>:</span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='int'>0</span> <span class='op'>:</span> <span class='op'>-</span><span class='int'>1</span><span class='rparen'>)</span><span class='rbrace'>}</span>
|
|
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|
+
<span class='kw'>end</span></pre>
|
|
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|
+
</td>
|
|
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|
+
</tr>
|
|
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|
+
</table>
|
|
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|
+
</div>
|
|
635
|
+
|
|
636
|
+
<div class="method_details ">
|
|
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|
+
<h3 class="signature " id="cost-instance_method">
|
|
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|
+
|
|
639
|
+
- (<tt>Object</tt>) <strong>cost</strong>(&block)
|
|
640
|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
</h3><div class="docstring">
|
|
646
|
+
<div class="discussion">
|
|
647
|
+
|
|
648
|
+
<p>Calculation to add the cost to the fitness, resulting in a fitness that
|
|
649
|
+
incorporates the cost for sorting purposes.</p>
|
|
650
|
+
|
|
651
|
+
|
|
652
|
+
</div>
|
|
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|
+
</div>
|
|
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|
+
<div class="tags">
|
|
655
|
+
|
|
656
|
+
|
|
657
|
+
</div><table class="source_code">
|
|
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|
+
<tr>
|
|
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|
+
<td>
|
|
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|
+
<pre class="lines">
|
|
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|
+
|
|
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|
+
|
|
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|
+
69
|
|
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|
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70
|
|
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|
+
71</pre>
|
|
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|
+
</td>
|
|
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|
+
<td>
|
|
668
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 69</span>
|
|
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|
+
|
|
670
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_cost'>cost</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
671
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_cost_func'>cost_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
672
|
+
<span class='kw'>end</span></pre>
|
|
673
|
+
</td>
|
|
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|
+
</tr>
|
|
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|
+
</table>
|
|
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|
+
</div>
|
|
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|
+
|
|
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|
+
<div class="method_details ">
|
|
679
|
+
<h3 class="signature " id="define-instance_method">
|
|
680
|
+
|
|
681
|
+
- (<tt>Object</tt>) <strong>define</strong>(name = NEAT.random_name_generator, &block)
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
</h3><div class="docstring">
|
|
688
|
+
<div class="discussion">
|
|
689
|
+
|
|
690
|
+
<p>DSL – Define defines the parameters to the controller.</p>
|
|
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|
+
|
|
692
|
+
|
|
693
|
+
</div>
|
|
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|
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</div>
|
|
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|
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<div class="tags">
|
|
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|
+
|
|
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|
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|
|
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|
+
</div><table class="source_code">
|
|
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|
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<tr>
|
|
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|
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<td>
|
|
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|
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<pre class="lines">
|
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|
+
36</pre>
|
|
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|
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|
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<td>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 15</span>
|
|
729
|
+
|
|
730
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_define'>define</span><span class='lparen'>(</span><span class='id identifier rubyid_name'>name</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='period'>.</span><span class='id identifier rubyid_random_name_generator'>random_name_generator</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
731
|
+
<span class='lbracket'>[</span>
|
|
732
|
+
<span class='symbol'>:inputs</span><span class='comma'>,</span>
|
|
733
|
+
<span class='symbol'>:outputs</span><span class='comma'>,</span>
|
|
734
|
+
<span class='symbol'>:hidden</span> <span class='comment'># we really don't care about mapping hidden neurons, but we'll ignore them later.
|
|
735
|
+
</span> <span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_iometh'>iometh</span><span class='op'>|</span>
|
|
736
|
+
<span class='id identifier rubyid_instance_eval'>instance_eval</span> <span class='tstring'><span class='tstring_beg'>%Q[</span><span class='tstring_content'>
|
|
737
|
+
def </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_iometh'>iometh</span><span class='embexpr_end'>}</span><span class='tstring_content'>(nodes = nil, &block)
|
|
738
|
+
neui = unless nodes.nil?
|
|
739
|
+
nodes
|
|
740
|
+
else
|
|
741
|
+
block.()
|
|
742
|
+
end
|
|
743
|
+
NEAT::controller.neural_</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_iometh'>iometh</span><span class='embexpr_end'>}</span><span class='tstring_content'> = if neui.kind_of? Hash
|
|
744
|
+
neui
|
|
745
|
+
else
|
|
746
|
+
Hash[neui.map{|n| [NEAT::random_name_generator, n]}]
|
|
747
|
+
end
|
|
748
|
+
end</span><span class='tstring_end'>]</span></span>
|
|
749
|
+
<span class='kw'>end</span>
|
|
750
|
+
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
|
751
|
+
<span class='kw'>end</span></pre>
|
|
752
|
+
</td>
|
|
753
|
+
</tr>
|
|
754
|
+
</table>
|
|
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|
+
</div>
|
|
756
|
+
|
|
757
|
+
<div class="method_details ">
|
|
758
|
+
<h3 class="signature " id="evolve-instance_method">
|
|
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|
+
|
|
760
|
+
- (<tt>Object</tt>) <strong>evolve</strong>(&block)
|
|
761
|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
</h3><div class="docstring">
|
|
767
|
+
<div class="discussion">
|
|
768
|
+
|
|
769
|
+
<p>DSL – Run evolution</p>
|
|
770
|
+
|
|
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|
+
|
|
772
|
+
</div>
|
|
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|
+
</div>
|
|
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|
+
<div class="tags">
|
|
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|
+
|
|
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|
+
|
|
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|
+
</div><table class="source_code">
|
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|
|
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|
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<pre class="lines">
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68
|
|
813
|
+
69
|
|
814
|
+
70
|
|
815
|
+
71
|
|
816
|
+
72
|
|
817
|
+
73
|
|
818
|
+
74
|
|
819
|
+
75
|
|
820
|
+
76
|
|
821
|
+
77
|
|
822
|
+
78
|
|
823
|
+
79
|
|
824
|
+
80
|
|
825
|
+
81
|
|
826
|
+
82
|
|
827
|
+
83
|
|
828
|
+
84
|
|
829
|
+
85
|
|
830
|
+
86
|
|
831
|
+
87
|
|
832
|
+
88
|
|
833
|
+
89
|
|
834
|
+
90
|
|
835
|
+
91
|
|
836
|
+
92
|
|
837
|
+
93
|
|
838
|
+
94
|
|
839
|
+
95
|
|
840
|
+
96
|
|
841
|
+
97
|
|
842
|
+
98
|
|
843
|
+
99
|
|
844
|
+
100</pre>
|
|
845
|
+
</td>
|
|
846
|
+
<td>
|
|
847
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 39</span>
|
|
848
|
+
|
|
849
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evolve'>evolve</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
850
|
+
<span class='comment'># Query function is called with the sequence (time evolution) number,
|
|
851
|
+
</span> <span class='comment'># and returns an array or hash of parameters that will be given
|
|
852
|
+
</span> <span class='comment'># to the input nodes. In the case of hash, the keys in the hash
|
|
853
|
+
</span> <span class='comment'># shall correspond to the names given to the input neurons.
|
|
854
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_query'>query</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
855
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_query_func'>query_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
856
|
+
<span class='kw'>end</span>
|
|
857
|
+
|
|
858
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_recurrence'>recurrence</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
859
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_recurrence_func'>recurrence_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
860
|
+
<span class='kw'>end</span>
|
|
861
|
+
|
|
862
|
+
<span class='comment'># fitness function calls the block with 2 vectors or two hashes, input and output
|
|
863
|
+
</span> <span class='comment'># vectors of the critter being evaluated for fitness, as well as a sequence
|
|
864
|
+
</span> <span class='comment'># number that can be used to index what the actual output should be.
|
|
865
|
+
</span> <span class='comment'># |vin, vout, seq|
|
|
866
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
867
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_fitness_func'>fitness_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
868
|
+
<span class='kw'>end</span>
|
|
869
|
+
|
|
870
|
+
<span class='comment'># Fitness ordering -- given 2 fitness numbers,
|
|
871
|
+
</span> <span class='comment'># use the <=> to compare them (or the equivalent, following
|
|
872
|
+
</span> <span class='comment'># the +1, 0, -1 that is in the sense of <=>)
|
|
873
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
874
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
875
|
+
<span class='kw'>end</span>
|
|
876
|
+
|
|
877
|
+
<span class='comment'># Calculation to add the cost to the fitness, resulting in a fitness
|
|
878
|
+
</span> <span class='comment'># that incorporates the cost for sorting purposes.
|
|
879
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_cost'>cost</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
880
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_cost_func'>cost_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
881
|
+
<span class='kw'>end</span>
|
|
882
|
+
|
|
883
|
+
<span class='comment'># Stop the progression once the fitness criteria is reached
|
|
884
|
+
</span> <span class='comment'># for the most fit critter
|
|
885
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_stop_on_fitness'>stop_on_fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
886
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_stop_on_fit_func'>stop_on_fit_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
887
|
+
<span class='kw'>end</span>
|
|
888
|
+
|
|
889
|
+
<span class='comment'># Helper function to
|
|
890
|
+
</span> <span class='comment'># Condition boolean vectors to be +1 if true, -1 if false (0 if sigmoid)
|
|
891
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_condition_boolean_vector'>condition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
892
|
+
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_b'>b</span> <span class='op'>?</span> <span class='int'>1</span> <span class='op'>:</span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='int'>0</span> <span class='op'>:</span> <span class='op'>-</span><span class='int'>1</span><span class='rparen'>)</span><span class='rbrace'>}</span>
|
|
893
|
+
<span class='kw'>end</span>
|
|
894
|
+
|
|
895
|
+
<span class='comment'># Helper function to
|
|
896
|
+
</span> <span class='comment'># Uncondition boolean vectors to be +1 if true, -1 if false
|
|
897
|
+
</span> <span class='comment'># FIXME we need a better discrimination function
|
|
898
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_uncondition_boolean_vector'>uncondition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
899
|
+
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_o'>o</span><span class='op'>|</span> <span class='id identifier rubyid_o'>o</span> <span class='op'>></span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='float'>0.5</span> <span class='op'>:</span> <span class='int'>0</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='kw'>true</span> <span class='op'>:</span> <span class='kw'>false</span><span class='rbrace'>}</span>
|
|
900
|
+
<span class='kw'>end</span>
|
|
901
|
+
|
|
902
|
+
<span class='comment'># Helper function to do a simple fitness calculation
|
|
903
|
+
</span> <span class='comment'># on the basis of the sum of the square of the diffences
|
|
904
|
+
</span> <span class='comment'># of the element in the two vectors.
|
|
905
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_simple_fitness_error'>simple_fitness_error</span><span class='lparen'>(</span><span class='id identifier rubyid_v1'>v1</span><span class='comma'>,</span> <span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span>
|
|
906
|
+
<span class='id identifier rubyid_sqrt'>sqrt</span> <span class='id identifier rubyid_v1'>v1</span><span class='period'>.</span><span class='id identifier rubyid_zip'>zip</span><span class='lparen'>(</span><span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span> <span class='op'>-</span> <span class='id identifier rubyid_b'>b</span><span class='rparen'>)</span> <span class='op'>**</span> <span class='float'>2.0</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='id identifier rubyid_c'>c</span><span class='op'>|</span> <span class='id identifier rubyid_m'>m</span> <span class='op'>+</span> <span class='id identifier rubyid_c'>c</span><span class='rbrace'>}</span>
|
|
907
|
+
<span class='kw'>end</span>
|
|
908
|
+
|
|
909
|
+
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
|
910
|
+
<span class='kw'>end</span></pre>
|
|
911
|
+
</td>
|
|
912
|
+
</tr>
|
|
913
|
+
</table>
|
|
914
|
+
</div>
|
|
915
|
+
|
|
916
|
+
<div class="method_details ">
|
|
917
|
+
<h3 class="signature " id="fitness-instance_method">
|
|
918
|
+
|
|
919
|
+
- (<tt>Object</tt>) <strong>fitness</strong>(&block)
|
|
920
|
+
|
|
921
|
+
|
|
922
|
+
|
|
923
|
+
|
|
924
|
+
|
|
925
|
+
</h3><div class="docstring">
|
|
926
|
+
<div class="discussion">
|
|
927
|
+
|
|
928
|
+
<p>fitness function calls the block with 2 vectors or two hashes, input and
|
|
929
|
+
output vectors of the critter being evaluated for fitness, as well as a
|
|
930
|
+
sequence number that can be used to index what the actual output should be.
|
|
931
|
+
|vin, vout, seq|</p>
|
|
932
|
+
|
|
933
|
+
|
|
934
|
+
</div>
|
|
935
|
+
</div>
|
|
936
|
+
<div class="tags">
|
|
937
|
+
|
|
938
|
+
|
|
939
|
+
</div><table class="source_code">
|
|
940
|
+
<tr>
|
|
941
|
+
<td>
|
|
942
|
+
<pre class="lines">
|
|
943
|
+
|
|
944
|
+
|
|
945
|
+
56
|
|
946
|
+
57
|
|
947
|
+
58</pre>
|
|
948
|
+
</td>
|
|
949
|
+
<td>
|
|
950
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 56</span>
|
|
951
|
+
|
|
952
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
953
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_fitness_func'>fitness_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
954
|
+
<span class='kw'>end</span></pre>
|
|
955
|
+
</td>
|
|
956
|
+
</tr>
|
|
957
|
+
</table>
|
|
958
|
+
</div>
|
|
959
|
+
|
|
960
|
+
<div class="method_details ">
|
|
961
|
+
<h3 class="signature " id="query-instance_method">
|
|
962
|
+
|
|
963
|
+
- (<tt>Object</tt>) <strong>query</strong>(&block)
|
|
964
|
+
|
|
965
|
+
|
|
966
|
+
|
|
967
|
+
|
|
968
|
+
|
|
969
|
+
</h3><div class="docstring">
|
|
970
|
+
<div class="discussion">
|
|
971
|
+
|
|
972
|
+
<p>Query function is called with the sequence (time evolution) number, and
|
|
973
|
+
returns an array or hash of parameters that will be given to the input
|
|
974
|
+
nodes. In the case of hash, the keys in the hash shall correspond to the
|
|
975
|
+
names given to the input neurons.</p>
|
|
976
|
+
|
|
977
|
+
|
|
978
|
+
</div>
|
|
979
|
+
</div>
|
|
980
|
+
<div class="tags">
|
|
981
|
+
|
|
982
|
+
|
|
983
|
+
</div><table class="source_code">
|
|
984
|
+
<tr>
|
|
985
|
+
<td>
|
|
986
|
+
<pre class="lines">
|
|
987
|
+
|
|
988
|
+
|
|
989
|
+
44
|
|
990
|
+
45
|
|
991
|
+
46</pre>
|
|
992
|
+
</td>
|
|
993
|
+
<td>
|
|
994
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 44</span>
|
|
995
|
+
|
|
996
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_query'>query</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
997
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_query_func'>query_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
998
|
+
<span class='kw'>end</span></pre>
|
|
999
|
+
</td>
|
|
1000
|
+
</tr>
|
|
1001
|
+
</table>
|
|
1002
|
+
</div>
|
|
1003
|
+
|
|
1004
|
+
<div class="method_details ">
|
|
1005
|
+
<h3 class="signature " id="recurrence-instance_method">
|
|
1006
|
+
|
|
1007
|
+
- (<tt>Object</tt>) <strong>recurrence</strong>(&block)
|
|
1008
|
+
|
|
1009
|
+
|
|
1010
|
+
|
|
1011
|
+
|
|
1012
|
+
|
|
1013
|
+
</h3><table class="source_code">
|
|
1014
|
+
<tr>
|
|
1015
|
+
<td>
|
|
1016
|
+
<pre class="lines">
|
|
1017
|
+
|
|
1018
|
+
|
|
1019
|
+
48
|
|
1020
|
+
49
|
|
1021
|
+
50</pre>
|
|
1022
|
+
</td>
|
|
1023
|
+
<td>
|
|
1024
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 48</span>
|
|
1025
|
+
|
|
1026
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_recurrence'>recurrence</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1027
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_recurrence_func'>recurrence_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1028
|
+
<span class='kw'>end</span></pre>
|
|
1029
|
+
</td>
|
|
1030
|
+
</tr>
|
|
1031
|
+
</table>
|
|
1032
|
+
</div>
|
|
1033
|
+
|
|
1034
|
+
<div class="method_details ">
|
|
1035
|
+
<h3 class="signature " id="report-instance_method">
|
|
1036
|
+
|
|
1037
|
+
- (<tt>Object</tt>) <strong>report</strong>(&block)
|
|
1038
|
+
|
|
1039
|
+
|
|
1040
|
+
|
|
1041
|
+
|
|
1042
|
+
|
|
1043
|
+
</h3><div class="docstring">
|
|
1044
|
+
<div class="discussion">
|
|
1045
|
+
|
|
1046
|
+
<p>Report on evaluations</p>
|
|
1047
|
+
|
|
1048
|
+
|
|
1049
|
+
</div>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 103</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_report'>report</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
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<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_report_hook'>report_hook</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
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<span class='kw'>end</span></pre>
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<p>Run the engine. The block is called on each generation.</p>
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111</pre>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 108</span>
|
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|
+
|
|
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|
+
<span class='kw'>def</span> <span class='id identifier rubyid_run_engine'>run_engine</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
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|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_end_run_func'>end_run_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
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|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_run'>run</span>
|
|
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|
+
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|
|
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- (<tt>Object</tt>) <strong>simple_fitness_error</strong>(v1, v2)
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<div class="discussion">
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|
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|
+
|
|
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|
+
<p>Helper function to do a simple fitness calculation on the basis of the sum
|
|
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|
+
of the square of the diffences of the element in the two vectors.</p>
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|
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<pre class="lines">
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|
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|
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|
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|
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|
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|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 95</span>
|
|
1151
|
+
|
|
1152
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_simple_fitness_error'>simple_fitness_error</span><span class='lparen'>(</span><span class='id identifier rubyid_v1'>v1</span><span class='comma'>,</span> <span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span>
|
|
1153
|
+
<span class='id identifier rubyid_sqrt'>sqrt</span> <span class='id identifier rubyid_v1'>v1</span><span class='period'>.</span><span class='id identifier rubyid_zip'>zip</span><span class='lparen'>(</span><span class='id identifier rubyid_v2'>v2</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span> <span class='op'>-</span> <span class='id identifier rubyid_b'>b</span><span class='rparen'>)</span> <span class='op'>**</span> <span class='float'>2.0</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_m'>m</span><span class='comma'>,</span> <span class='id identifier rubyid_c'>c</span><span class='op'>|</span> <span class='id identifier rubyid_m'>m</span> <span class='op'>+</span> <span class='id identifier rubyid_c'>c</span><span class='rbrace'>}</span>
|
|
1154
|
+
<span class='kw'>end</span></pre>
|
|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
+
<h3 class="signature " id="stop_on_fitness-instance_method">
|
|
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|
+
|
|
1163
|
+
- (<tt>Object</tt>) <strong>stop_on_fitness</strong>(&block)
|
|
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|
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|
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|
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|
|
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|
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|
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|
|
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|
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|
|
1170
|
+
<div class="discussion">
|
|
1171
|
+
|
|
1172
|
+
<p>Stop the progression once the fitness criteria is reached for the most fit
|
|
1173
|
+
critter</p>
|
|
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|
+
|
|
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|
+
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|
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|
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|
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|
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|
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76
|
|
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|
+
77</pre>
|
|
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|
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|
|
1191
|
+
<td>
|
|
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|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 75</span>
|
|
1193
|
+
|
|
1194
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_stop_on_fitness'>stop_on_fitness</span><span class='lparen'>(</span><span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
1195
|
+
<span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_stop_on_fit_func'>stop_on_fit_func</span> <span class='op'>=</span> <span class='id identifier rubyid_block'>block</span>
|
|
1196
|
+
<span class='kw'>end</span></pre>
|
|
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|
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|
|
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|
+
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|
|
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|
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|
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|
|
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|
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|
|
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|
+
<div class="method_details ">
|
|
1203
|
+
<h3 class="signature " id="uncondition_boolean_vector-instance_method">
|
|
1204
|
+
|
|
1205
|
+
- (<tt>Object</tt>) <strong>uncondition_boolean_vector</strong>(vec, sig = :tanh)
|
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|
+
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|
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|
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|
|
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|
|
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|
|
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|
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|
|
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|
+
<div class="discussion">
|
|
1213
|
+
|
|
1214
|
+
<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
|
|
1215
|
+
false FIXME we need a better discrimination function</p>
|
|
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|
+
|
|
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|
+
|
|
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|
+
</div>
|
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|
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|
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|
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|
|
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|
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|
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<pre class="lines">
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|
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|
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|
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|
|
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|
+
88
|
|
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|
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89
|
|
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|
+
90</pre>
|
|
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|
+
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|
|
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|
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|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/dsl.rb', line 88</span>
|
|
1235
|
+
|
|
1236
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_uncondition_boolean_vector'>uncondition_boolean_vector</span><span class='lparen'>(</span><span class='id identifier rubyid_vec'>vec</span><span class='comma'>,</span> <span class='id identifier rubyid_sig'>sig</span> <span class='op'>=</span> <span class='symbol'>:tanh</span><span class='rparen'>)</span>
|
|
1237
|
+
<span class='id identifier rubyid_vec'>vec</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_o'>o</span><span class='op'>|</span> <span class='id identifier rubyid_o'>o</span> <span class='op'>></span> <span class='lparen'>(</span><span class='lparen'>(</span><span class='id identifier rubyid_sig'>sig</span> <span class='op'>==</span> <span class='symbol'>:sigmoid</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='float'>0.5</span> <span class='op'>:</span> <span class='int'>0</span><span class='rparen'>)</span> <span class='op'>?</span> <span class='kw'>true</span> <span class='op'>:</span> <span class='kw'>false</span><span class='rbrace'>}</span>
|
|
1238
|
+
<span class='kw'>end</span></pre>
|
|
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|
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Generated on Sun Apr 13 15:54:01 2014 by
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<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
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0.8.7.4 (ruby-2.1.1).
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