rubyneat 0.3.5.alpha.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.directory +4 -0
- data/.gitignore.orig +20 -0
- data/.idea/.name +1 -0
- data/.idea/.rakeTasks +7 -0
- data/.idea/dictionaries/trader.xml +3 -0
- data/.idea/encodings.xml +5 -0
- data/.idea/misc.xml +5 -0
- data/.idea/modules.xml +9 -0
- data/.idea/rubyneat.iml +197 -0
- data/.idea/runConfigurations/invpend_neat.xml +26 -0
- data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
- data/.idea/runConfigurations/xor_neat.xml +26 -0
- data/.idea/runConfigurations/xordebug_neat.xml +24 -0
- data/.idea/runConfigurations/xorsin_neat.xml +24 -0
- data/.idea/scopes/scope_settings.xml +5 -0
- data/.idea/vcs.xml +7 -0
- data/.idea/workspace.xml +1124 -0
- data/.semver +5 -0
- data/.yardoc/checksums +11 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +32 -0
- data/Gemfile.lock +135 -0
- data/Gemfile.lock.orig +147 -0
- data/Guardfile +8 -0
- data/Rakefile +61 -0
- data/bin/neat +83 -0
- data/config/application.rb +5 -0
- data/doc/ControllerPoint.html +125 -0
- data/doc/CuteA.html +286 -0
- data/doc/CuteB.html +297 -0
- data/doc/DSL.html +883 -0
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes.html +136 -0
- data/doc/NEAT/Controller/NeatSettings.html +3985 -0
- data/doc/NEAT/Controller.html +2490 -0
- data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
- data/doc/NEAT/Critter/Genotype.html +1601 -0
- data/doc/NEAT/Critter/Phenotype.html +603 -0
- data/doc/NEAT/Critter.html +1037 -0
- data/doc/NEAT/DSL.html +1255 -0
- data/doc/NEAT/Evaluator.html +420 -0
- data/doc/NEAT/Evolver/CritterOp.html +551 -0
- data/doc/NEAT/Evolver.html +602 -0
- data/doc/NEAT/Expressor.html +327 -0
- data/doc/NEAT/Graph/DependencyResolver.html +478 -0
- data/doc/NEAT/Graph/GraphException.html +123 -0
- data/doc/NEAT/Graph.html +402 -0
- data/doc/NEAT/NeatException.html +123 -0
- data/doc/NEAT/NeatOb.html +567 -0
- data/doc/NEAT/Neuron.html +1067 -0
- data/doc/NEAT/Operator.html +162 -0
- data/doc/NEAT/Population.html +1961 -0
- data/doc/NEAT/Trait.html +169 -0
- data/doc/NEAT.html +588 -0
- data/doc/_index.html +373 -0
- data/doc/class_list.html +54 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +57 -0
- data/doc/css/style.css +339 -0
- data/doc/file_list.html +53 -0
- data/doc/frames.html +26 -0
- data/doc/index.html +373 -0
- data/doc/js/app.js +219 -0
- data/doc/js/full_list.js +178 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1415 -0
- data/doc/top-level-namespace.html +164 -0
- data/foo/foo_aquarium_example.rb +38 -0
- data/foo/foo_gosu.rb +99 -0
- data/foo/foo_rubygoo.rb +104 -0
- data/foo/foo_sdl.rb +34 -0
- data/foo/icon.png +0 -0
- data/lib/rubyneat/critter.rb +374 -0
- data/lib/rubyneat/default_neat.rb +10 -0
- data/lib/rubyneat/dsl.rb +130 -0
- data/lib/rubyneat/evaluator.rb +51 -0
- data/lib/rubyneat/evolver.rb +315 -0
- data/lib/rubyneat/expressor.rb +110 -0
- data/lib/rubyneat/graph.rb +95 -0
- data/lib/rubyneat/neuron.rb +152 -0
- data/lib/rubyneat/population.rb +227 -0
- data/lib/rubyneat/rubyneat.rb +429 -0
- data/lib/rubyneat.rb +8 -0
- data/neater/invpend_neat.rb +150 -0
- data/neater/rnlib/inverted_pendulum.rb +380 -0
- data/neater/rnlib/xor.rb +10 -0
- data/neater/sigdebug_neat.rb +136 -0
- data/neater/xor_neat.rb +137 -0
- data/neater/xoranalog_neat.rb +138 -0
- data/neater/xorsin_neat.rb +143 -0
- data/projectFilesBackup/.idea/rubyneat.iml +180 -0
- data/public/.directory +4 -0
- data/public/background.png +0 -0
- data/public/background.xcf +0 -0
- data/public/cart.png +0 -0
- data/public/cart.xcf +0 -0
- data/public/metalpoles_molton_ball_l.jpg +0 -0
- data/public/old_background.png +0 -0
- data/public/pointer.png +0 -0
- data/public/pointer.xcf +0 -0
- data/public/pole.kra +0 -0
- data/public/pole.png +0 -0
- data/public/pole.xcf +0 -0
- data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
- data/public/wheel.png +0 -0
- data/public/wheel.xcf +0 -0
- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +116 -0
- data/rdoc/CuteA.html +177 -0
- data/rdoc/CuteB.html +178 -0
- data/rdoc/DSLSetup.html +177 -0
- data/rdoc/GameTestWindow.html +242 -0
- data/rdoc/GameWindow.html +292 -0
- data/rdoc/Gemfile.html +215 -0
- data/rdoc/Gemfile_lock.html +327 -0
- data/rdoc/GraphTest.html +210 -0
- data/rdoc/Guardfile.html +198 -0
- data/rdoc/InvertedPendulum/Cart.html +668 -0
- data/rdoc/InvertedPendulum/DSL.html +259 -0
- data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
- data/rdoc/InvertedPendulum.html +198 -0
- data/rdoc/Logger.html +98 -0
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
- data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
- data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
- data/rdoc/NEAT/Controller.html +729 -0
- data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
- data/rdoc/NEAT/Critter/Genotype.html +735 -0
- data/rdoc/NEAT/Critter/Phenotype.html +330 -0
- data/rdoc/NEAT/Critter.html +489 -0
- data/rdoc/NEAT/DSL.html +729 -0
- data/rdoc/NEAT/Evaluator.html +256 -0
- data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
- data/rdoc/NEAT/Evolver.html +891 -0
- data/rdoc/NEAT/Expressor.html +402 -0
- data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
- data/rdoc/NEAT/Graph/GraphException.html +105 -0
- data/rdoc/NEAT/Graph.html +263 -0
- data/rdoc/NEAT/NeatException.html +105 -0
- data/rdoc/NEAT/NeatOb.html +325 -0
- data/rdoc/NEAT/Neuron.html +481 -0
- data/rdoc/NEAT/Operator.html +109 -0
- data/rdoc/NEAT/Population.html +935 -0
- data/rdoc/NEAT/Trait.html +117 -0
- data/rdoc/NEAT.html +422 -0
- data/rdoc/Object.html +384 -0
- data/rdoc/Phi.html +98 -0
- data/rdoc/Player.html +383 -0
- data/rdoc/Rakefile.html +254 -0
- data/rdoc/RubyNEAT/Application.html +105 -0
- data/rdoc/RubyNEAT.html +98 -0
- data/rdoc/SDL/Event2.html +98 -0
- data/rdoc/SDL.html +98 -0
- data/rdoc/Vector.html +195 -0
- data/rdoc/created.rid +125 -0
- data/rdoc/doc/ControllerPoint_html.html +299 -0
- data/rdoc/doc/CuteA_html.html +438 -0
- data/rdoc/doc/CuteB_html.html +436 -0
- data/rdoc/doc/DSL_html.html +992 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
- data/rdoc/doc/NEAT/Controller_html.html +2212 -0
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
- data/rdoc/doc/NEAT/Critter_html.html +1037 -0
- data/rdoc/doc/NEAT/DSL_html.html +1349 -0
- data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
- data/rdoc/doc/NEAT/Evolver_html.html +677 -0
- data/rdoc/doc/NEAT/Expressor_html.html +468 -0
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
- data/rdoc/doc/NEAT/Graph_html.html +527 -0
- data/rdoc/doc/NEAT/NeatException_html.html +299 -0
- data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
- data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
- data/rdoc/doc/NEAT/Operator_html.html +337 -0
- data/rdoc/doc/NEAT/Population_html.html +1795 -0
- data/rdoc/doc/NEAT/Trait_html.html +344 -0
- data/rdoc/doc/NEAT_html.html +736 -0
- data/rdoc/doc/_index_html.html +559 -0
- data/rdoc/doc/class_list_html.html +369 -0
- data/rdoc/doc/css/common_css.html +188 -0
- data/rdoc/doc/css/full_list_css.html +243 -0
- data/rdoc/doc/css/style_css.html +530 -0
- data/rdoc/doc/file_list_html.html +240 -0
- data/rdoc/doc/frames_html.html +217 -0
- data/rdoc/doc/index_html.html +559 -0
- data/rdoc/doc/js/app_js.html +423 -0
- data/rdoc/doc/js/full_list_js.html +372 -0
- data/rdoc/doc/js/jquery_js.html +1536 -0
- data/rdoc/doc/method_list_html.html +1375 -0
- data/rdoc/doc/top-level-namespace_html.html +317 -0
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/fonts.css +167 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
- data/rdoc/images/bullet_black.png +0 -0
- data/rdoc/images/bullet_toggle_minus.png +0 -0
- data/rdoc/images/bullet_toggle_plus.png +0 -0
- data/rdoc/images/date.png +0 -0
- data/rdoc/images/delete.png +0 -0
- data/rdoc/images/find.png +0 -0
- data/rdoc/images/loadingAnimation.gif +0 -0
- data/rdoc/images/macFFBgHack.png +0 -0
- data/rdoc/images/package.png +0 -0
- data/rdoc/images/page_green.png +0 -0
- data/rdoc/images/page_white_text.png +0 -0
- data/rdoc/images/page_white_width.png +0 -0
- data/rdoc/images/plugin.png +0 -0
- data/rdoc/images/ruby.png +0 -0
- data/rdoc/images/tag_blue.png +0 -0
- data/rdoc/images/tag_green.png +0 -0
- data/rdoc/images/transparent.png +0 -0
- data/rdoc/images/wrench.png +0 -0
- data/rdoc/images/wrench_orange.png +0 -0
- data/rdoc/images/zoom.png +0 -0
- data/rdoc/index.html +282 -0
- data/rdoc/js/darkfish.js +140 -0
- data/rdoc/js/jquery.js +18 -0
- data/rdoc/js/navigation.js +142 -0
- data/rdoc/js/search.js +109 -0
- data/rdoc/js/search_index.js +1 -0
- data/rdoc/js/searcher.js +228 -0
- data/rdoc/rdoc.css +580 -0
- data/rdoc/rubyneat_gemspec.html +387 -0
- data/rdoc/table_of_contents.html +2502 -0
- data/rdoc/xordebug_log.html +170598 -0
- data/rdoc/xorsin_log.html +22569 -0
- data/rubyneat.gemspec +347 -0
- data/rubyneat.gemspec.orig +375 -0
- data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
- metadata +555 -0
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— Documentation by YARD 0.8.7.4
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<strong class="classes">Classes:</strong> <span class='object_link'><a href="Critter/Genotype.html" title="NEAT::Critter::Genotype (class)">Genotype</a></span>, <span class='object_link'><a href="Critter/Phenotype.html" title="NEAT::Critter::Phenotype (class)">Phenotype</a></span>
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<a href="#phenotype-instance_method" title="#phenotype (instance method)">- (Object) <strong>phenotype</strong> </a>
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<a href="#population-instance_method" title="#population (instance method)">- (Object) <strong>population</strong> </a>
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<span class="note title readonly">readonly</span>
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<h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
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<p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
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<h2>
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Instance Method Summary
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<small>(<a href="#" class="summary_toggle">collapse</a>)</small>
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<a href="#compare-instance_method" title="#compare (instance method)">- (Object) <strong>compare</strong>(oc) </a>
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<p>Compare ourselves against another critter for compability.</p>
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<a href="#dump_s-instance_method" title="#dump_s (instance method)">- (Object) <strong>dump_s</strong> </a>
|
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<span class="summary_desc"><div class='inline'>
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<p>Critter print.</p>
|
|
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</div></span>
|
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|
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<a href="#evaluate%21-instance_method" title="#evaluate! (instance method)">- (Object) <strong>evaluate!</strong> </a>
|
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</span>
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<span class="summary_desc"><div class='inline'>
|
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<p>A single evaluation step.</p>
|
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</div></span>
|
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|
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<span class="summary_signature">
|
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|
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<a href="#express%21-instance_method" title="#express! (instance method)">- (Object) <strong>express!</strong> </a>
|
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|
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<span class="summary_desc"><div class='inline'>
|
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|
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<p>Exoress this critter using the Expressor plugin.</p>
|
|
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|
+
</div></span>
|
|
382
|
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|
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|
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</li>
|
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|
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|
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<span class="summary_signature">
|
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388
|
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|
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|
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<a href="#initialize-instance_method" title="#initialize (instance method)">- (Critter) <strong>initialize</strong>(pop, mating = false, &block) </a>
|
|
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|
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|
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|
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</span>
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|
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|
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|
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<span class="note title constructor">constructor</span>
|
|
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|
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|
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|
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|
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|
|
404
|
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|
|
405
|
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<span class="summary_desc"><div class='inline'>
|
|
406
|
+
<p>Critter construction.</p>
|
|
407
|
+
</div></span>
|
|
408
|
+
|
|
409
|
+
</li>
|
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|
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|
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|
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|
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<li class="public ">
|
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|
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<span class="summary_signature">
|
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414
|
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|
|
415
|
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<a href="#initialize_neurons%21-instance_method" title="#initialize_neurons! (instance method)">- (Object) <strong>initialize_neurons!</strong> </a>
|
|
416
|
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|
|
417
|
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|
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418
|
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|
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419
|
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</span>
|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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<span class="summary_desc"><div class='inline'>
|
|
430
|
+
<p>This initializes neurons in preparation for recurrence.</p>
|
|
431
|
+
</div></span>
|
|
432
|
+
|
|
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|
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</li>
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|
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|
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<li class="public ">
|
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|
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<span class="summary_signature">
|
|
438
|
+
|
|
439
|
+
<a href="#ready_for_expression%21-instance_method" title="#ready_for_expression! (instance method)">- (Object) <strong>ready_for_expression!</strong> </a>
|
|
440
|
+
|
|
441
|
+
|
|
442
|
+
|
|
443
|
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</span>
|
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|
|
452
|
+
|
|
453
|
+
<span class="summary_desc"><div class='inline'>
|
|
454
|
+
<p>Get the Critter ready for the Expressor to express the geneotype.</p>
|
|
455
|
+
</div></span>
|
|
456
|
+
|
|
457
|
+
</li>
|
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|
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459
|
+
|
|
460
|
+
</ul>
|
|
461
|
+
|
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462
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|
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463
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|
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|
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467
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469
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|
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470
|
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|
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471
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|
|
472
|
+
<h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
|
473
|
+
<p class="inherited"><span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
|
|
474
|
+
|
|
475
|
+
<div id="constructor_details" class="method_details_list">
|
|
476
|
+
<h2>Constructor Details</h2>
|
|
477
|
+
|
|
478
|
+
<div class="method_details first">
|
|
479
|
+
<h3 class="signature first" id="initialize-instance_method">
|
|
480
|
+
|
|
481
|
+
- (<tt><span class='object_link'><a href="" title="NEAT::Critter (class)">Critter</a></span></tt>) <strong>initialize</strong>(pop, mating = false, &block)
|
|
482
|
+
|
|
483
|
+
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
|
|
487
|
+
</h3><div class="docstring">
|
|
488
|
+
<div class="discussion">
|
|
489
|
+
|
|
490
|
+
<p>Critter construction. We construct the genotype. The phenotype will be
|
|
491
|
+
constructed by the Expressor operator.</p>
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
</div>
|
|
495
|
+
</div>
|
|
496
|
+
<div class="tags">
|
|
497
|
+
|
|
498
|
+
|
|
499
|
+
</div><table class="source_code">
|
|
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<tr>
|
|
501
|
+
<td>
|
|
502
|
+
<pre class="lines">
|
|
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|
+
|
|
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|
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|
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20
|
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506
|
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21
|
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|
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22
|
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|
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23
|
|
509
|
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24
|
|
510
|
+
25</pre>
|
|
511
|
+
</td>
|
|
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|
+
<td>
|
|
513
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 20</span>
|
|
514
|
+
|
|
515
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_pop'>pop</span><span class='comma'>,</span> <span class='id identifier rubyid_mating'>mating</span> <span class='op'>=</span> <span class='kw'>false</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
516
|
+
<span class='kw'>super</span> <span class='id identifier rubyid_pop'>pop</span><span class='period'>.</span><span class='id identifier rubyid_controller'>controller</span>
|
|
517
|
+
<span class='ivar'>@population</span> <span class='op'>=</span> <span class='id identifier rubyid_pop'>pop</span>
|
|
518
|
+
<span class='ivar'>@genotype</span> <span class='op'>=</span> <span class='const'>Genotype</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='comma'>,</span> <span class='id identifier rubyid_mating'>mating</span><span class='rparen'>)</span>
|
|
519
|
+
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
520
|
+
<span class='kw'>end</span></pre>
|
|
521
|
+
</td>
|
|
522
|
+
</tr>
|
|
523
|
+
</table>
|
|
524
|
+
</div>
|
|
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|
+
|
|
526
|
+
</div>
|
|
527
|
+
|
|
528
|
+
<div id="instance_attr_details" class="attr_details">
|
|
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|
+
<h2>Instance Attribute Details</h2>
|
|
530
|
+
|
|
531
|
+
|
|
532
|
+
<span id="fitness=-instance_method"></span>
|
|
533
|
+
<div class="method_details first">
|
|
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|
+
<h3 class="signature first" id="fitness-instance_method">
|
|
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|
+
|
|
536
|
+
- (<tt>Object</tt>) <strong>fitness</strong>
|
|
537
|
+
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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</h3><div class="docstring">
|
|
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|
+
<div class="discussion">
|
|
544
|
+
|
|
545
|
+
<p>Ratings assigned by Evaluator</p>
|
|
546
|
+
|
|
547
|
+
|
|
548
|
+
</div>
|
|
549
|
+
</div>
|
|
550
|
+
<div class="tags">
|
|
551
|
+
|
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552
|
+
|
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553
|
+
</div><table class="source_code">
|
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<tr>
|
|
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|
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<td>
|
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|
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<pre class="lines">
|
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|
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|
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|
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16
|
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|
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17
|
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|
+
18</pre>
|
|
562
|
+
</td>
|
|
563
|
+
<td>
|
|
564
|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span>
|
|
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|
+
|
|
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|
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<span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span>
|
|
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|
+
<span class='ivar'>@fitness</span>
|
|
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|
+
<span class='kw'>end</span></pre>
|
|
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|
+
</td>
|
|
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|
+
</tr>
|
|
571
|
+
</table>
|
|
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|
+
</div>
|
|
573
|
+
|
|
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|
+
|
|
575
|
+
<span id="genotype=-instance_method"></span>
|
|
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|
+
<div class="method_details ">
|
|
577
|
+
<h3 class="signature " id="genotype-instance_method">
|
|
578
|
+
|
|
579
|
+
- (<tt>Object</tt>) <strong>genotype</strong>
|
|
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|
+
|
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|
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|
|
582
|
+
|
|
583
|
+
|
|
584
|
+
|
|
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|
+
</h3><div class="docstring">
|
|
586
|
+
<div class="discussion">
|
|
587
|
+
|
|
588
|
+
<p>Returns the value of attribute genotype</p>
|
|
589
|
+
|
|
590
|
+
|
|
591
|
+
</div>
|
|
592
|
+
</div>
|
|
593
|
+
<div class="tags">
|
|
594
|
+
|
|
595
|
+
|
|
596
|
+
</div><table class="source_code">
|
|
597
|
+
<tr>
|
|
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|
+
<td>
|
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|
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<pre class="lines">
|
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|
+
|
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|
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|
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|
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13
|
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|
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14
|
|
604
|
+
15</pre>
|
|
605
|
+
</td>
|
|
606
|
+
<td>
|
|
607
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span>
|
|
608
|
+
|
|
609
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_genotype'>genotype</span>
|
|
610
|
+
<span class='ivar'>@genotype</span>
|
|
611
|
+
<span class='kw'>end</span></pre>
|
|
612
|
+
</td>
|
|
613
|
+
</tr>
|
|
614
|
+
</table>
|
|
615
|
+
</div>
|
|
616
|
+
|
|
617
|
+
|
|
618
|
+
<span id="novelty=-instance_method"></span>
|
|
619
|
+
<div class="method_details ">
|
|
620
|
+
<h3 class="signature " id="novelty-instance_method">
|
|
621
|
+
|
|
622
|
+
- (<tt>Object</tt>) <strong>novelty</strong>
|
|
623
|
+
|
|
624
|
+
|
|
625
|
+
|
|
626
|
+
|
|
627
|
+
|
|
628
|
+
</h3><div class="docstring">
|
|
629
|
+
<div class="discussion">
|
|
630
|
+
|
|
631
|
+
<p>Ratings assigned by Evaluator</p>
|
|
632
|
+
|
|
633
|
+
|
|
634
|
+
</div>
|
|
635
|
+
</div>
|
|
636
|
+
<div class="tags">
|
|
637
|
+
|
|
638
|
+
|
|
639
|
+
</div><table class="source_code">
|
|
640
|
+
<tr>
|
|
641
|
+
<td>
|
|
642
|
+
<pre class="lines">
|
|
643
|
+
|
|
644
|
+
|
|
645
|
+
16
|
|
646
|
+
17
|
|
647
|
+
18</pre>
|
|
648
|
+
</td>
|
|
649
|
+
<td>
|
|
650
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 16</span>
|
|
651
|
+
|
|
652
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_novelty'>novelty</span>
|
|
653
|
+
<span class='ivar'>@novelty</span>
|
|
654
|
+
<span class='kw'>end</span></pre>
|
|
655
|
+
</td>
|
|
656
|
+
</tr>
|
|
657
|
+
</table>
|
|
658
|
+
</div>
|
|
659
|
+
|
|
660
|
+
|
|
661
|
+
<span id="phenotype=-instance_method"></span>
|
|
662
|
+
<div class="method_details ">
|
|
663
|
+
<h3 class="signature " id="phenotype-instance_method">
|
|
664
|
+
|
|
665
|
+
- (<tt>Object</tt>) <strong>phenotype</strong>
|
|
666
|
+
|
|
667
|
+
|
|
668
|
+
|
|
669
|
+
|
|
670
|
+
|
|
671
|
+
</h3><div class="docstring">
|
|
672
|
+
<div class="discussion">
|
|
673
|
+
|
|
674
|
+
<p>Returns the value of attribute phenotype</p>
|
|
675
|
+
|
|
676
|
+
|
|
677
|
+
</div>
|
|
678
|
+
</div>
|
|
679
|
+
<div class="tags">
|
|
680
|
+
|
|
681
|
+
|
|
682
|
+
</div><table class="source_code">
|
|
683
|
+
<tr>
|
|
684
|
+
<td>
|
|
685
|
+
<pre class="lines">
|
|
686
|
+
|
|
687
|
+
|
|
688
|
+
13
|
|
689
|
+
14
|
|
690
|
+
15</pre>
|
|
691
|
+
</td>
|
|
692
|
+
<td>
|
|
693
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 13</span>
|
|
694
|
+
|
|
695
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_phenotype'>phenotype</span>
|
|
696
|
+
<span class='ivar'>@phenotype</span>
|
|
697
|
+
<span class='kw'>end</span></pre>
|
|
698
|
+
</td>
|
|
699
|
+
</tr>
|
|
700
|
+
</table>
|
|
701
|
+
</div>
|
|
702
|
+
|
|
703
|
+
|
|
704
|
+
<span id=""></span>
|
|
705
|
+
<div class="method_details ">
|
|
706
|
+
<h3 class="signature " id="population-instance_method">
|
|
707
|
+
|
|
708
|
+
- (<tt>Object</tt>) <strong>population</strong> <span class="extras">(readonly)</span>
|
|
709
|
+
|
|
710
|
+
|
|
711
|
+
|
|
712
|
+
|
|
713
|
+
|
|
714
|
+
</h3><div class="docstring">
|
|
715
|
+
<div class="discussion">
|
|
716
|
+
|
|
717
|
+
<p>Returns the value of attribute population</p>
|
|
718
|
+
|
|
719
|
+
|
|
720
|
+
</div>
|
|
721
|
+
</div>
|
|
722
|
+
<div class="tags">
|
|
723
|
+
|
|
724
|
+
|
|
725
|
+
</div><table class="source_code">
|
|
726
|
+
<tr>
|
|
727
|
+
<td>
|
|
728
|
+
<pre class="lines">
|
|
729
|
+
|
|
730
|
+
|
|
731
|
+
12
|
|
732
|
+
13
|
|
733
|
+
14</pre>
|
|
734
|
+
</td>
|
|
735
|
+
<td>
|
|
736
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 12</span>
|
|
737
|
+
|
|
738
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_population'>population</span>
|
|
739
|
+
<span class='ivar'>@population</span>
|
|
740
|
+
<span class='kw'>end</span></pre>
|
|
741
|
+
</td>
|
|
742
|
+
</tr>
|
|
743
|
+
</table>
|
|
744
|
+
</div>
|
|
745
|
+
|
|
746
|
+
</div>
|
|
747
|
+
|
|
748
|
+
|
|
749
|
+
<div id="instance_method_details" class="method_details_list">
|
|
750
|
+
<h2>Instance Method Details</h2>
|
|
751
|
+
|
|
752
|
+
|
|
753
|
+
<div class="method_details first">
|
|
754
|
+
<h3 class="signature first" id="compare-instance_method">
|
|
755
|
+
|
|
756
|
+
- (<tt>Object</tt>) <strong>compare</strong>(oc)
|
|
757
|
+
|
|
758
|
+
|
|
759
|
+
|
|
760
|
+
|
|
761
|
+
|
|
762
|
+
</h3><div class="docstring">
|
|
763
|
+
<div class="discussion">
|
|
764
|
+
|
|
765
|
+
<p>Compare ourselves against another critter for compability.</p>
|
|
766
|
+
|
|
767
|
+
<p>The function to be used here is: distance = c1*E + c2*D + c3*W</p>
|
|
768
|
+
|
|
769
|
+
<p>Where: E, D - The number of excess and disjoint genes repesctively. N - The
|
|
770
|
+
number of genes in the largest genome. W - The sum of absolute weight
|
|
771
|
+
differences.</p>
|
|
772
|
+
|
|
773
|
+
<p>This is a variation of the formulation suggested by the Stanley paper,
|
|
774
|
+
which normalizes the E and D terms by N.</p>
|
|
775
|
+
|
|
776
|
+
|
|
777
|
+
</div>
|
|
778
|
+
</div>
|
|
779
|
+
<div class="tags">
|
|
780
|
+
|
|
781
|
+
|
|
782
|
+
</div><table class="source_code">
|
|
783
|
+
<tr>
|
|
784
|
+
<td>
|
|
785
|
+
<pre class="lines">
|
|
786
|
+
|
|
787
|
+
|
|
788
|
+
333
|
|
789
|
+
334
|
|
790
|
+
335
|
|
791
|
+
336
|
|
792
|
+
337
|
|
793
|
+
338
|
|
794
|
+
339
|
|
795
|
+
340
|
|
796
|
+
341</pre>
|
|
797
|
+
</td>
|
|
798
|
+
<td>
|
|
799
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 333</span>
|
|
800
|
+
|
|
801
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
802
|
+
<span class='id identifier rubyid_c1'>c1</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_excess_coefficient'>excess_coefficient</span>
|
|
803
|
+
<span class='id identifier rubyid_c2'>c2</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_disjoint_coefficient'>disjoint_coefficient</span>
|
|
804
|
+
<span class='id identifier rubyid_c3'>c3</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_weight_coefficient'>weight_coefficient</span>
|
|
805
|
+
<span class='id identifier rubyid_e'>e</span> <span class='op'>=</span> <span class='id identifier rubyid_excess'>excess</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
806
|
+
<span class='id identifier rubyid_d'>d</span> <span class='op'>=</span> <span class='id identifier rubyid_disjoint'>disjoint</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
807
|
+
<span class='id identifier rubyid_w'>w</span> <span class='op'>=</span> <span class='id identifier rubyid_weight_diff'>weight_diff</span><span class='lparen'>(</span><span class='id identifier rubyid_oc'>oc</span><span class='rparen'>)</span>
|
|
808
|
+
<span class='kw'>return</span> <span class='id identifier rubyid_c1'>c1</span> <span class='op'>*</span> <span class='id identifier rubyid_e'>e</span> <span class='op'>+</span> <span class='id identifier rubyid_c2'>c2</span> <span class='op'>*</span> <span class='id identifier rubyid_d'>d</span> <span class='op'>+</span> <span class='id identifier rubyid_c3'>c3</span> <span class='op'>*</span> <span class='id identifier rubyid_w'>w</span>
|
|
809
|
+
<span class='kw'>end</span></pre>
|
|
810
|
+
</td>
|
|
811
|
+
</tr>
|
|
812
|
+
</table>
|
|
813
|
+
</div>
|
|
814
|
+
|
|
815
|
+
<div class="method_details ">
|
|
816
|
+
<h3 class="signature " id="dump_s-instance_method">
|
|
817
|
+
|
|
818
|
+
- (<tt>Object</tt>) <strong>dump_s</strong>
|
|
819
|
+
|
|
820
|
+
|
|
821
|
+
|
|
822
|
+
|
|
823
|
+
|
|
824
|
+
</h3><div class="docstring">
|
|
825
|
+
<div class="discussion">
|
|
826
|
+
|
|
827
|
+
<p>Critter print</p>
|
|
828
|
+
|
|
829
|
+
|
|
830
|
+
</div>
|
|
831
|
+
</div>
|
|
832
|
+
<div class="tags">
|
|
833
|
+
|
|
834
|
+
|
|
835
|
+
</div><table class="source_code">
|
|
836
|
+
<tr>
|
|
837
|
+
<td>
|
|
838
|
+
<pre class="lines">
|
|
839
|
+
|
|
840
|
+
|
|
841
|
+
344
|
|
842
|
+
345
|
|
843
|
+
346</pre>
|
|
844
|
+
</td>
|
|
845
|
+
<td>
|
|
846
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 344</span>
|
|
847
|
+
|
|
848
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_dump_s'>dump_s</span>
|
|
849
|
+
<span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_dump_s'>dump_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\n</span><span class='tstring_end'>"</span></span> <span class='op'>+</span> <span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\n</span><span class='tstring_end'>"</span></span>
|
|
850
|
+
<span class='kw'>end</span></pre>
|
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851
|
+
</td>
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852
|
+
</tr>
|
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853
|
+
</table>
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854
|
+
</div>
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855
|
+
|
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856
|
+
<div class="method_details ">
|
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857
|
+
<h3 class="signature " id="evaluate!-instance_method">
|
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858
|
+
|
|
859
|
+
- (<tt>Object</tt>) <strong>evaluate!</strong>
|
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860
|
+
|
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861
|
+
|
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862
|
+
|
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863
|
+
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864
|
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|
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865
|
+
</h3><div class="docstring">
|
|
866
|
+
<div class="discussion">
|
|
867
|
+
|
|
868
|
+
<p>A single evaluation step. Evaluate and generate fitness, novelty, etc.
|
|
869
|
+
Returns the result.</p>
|
|
870
|
+
|
|
871
|
+
|
|
872
|
+
</div>
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873
|
+
</div>
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874
|
+
<div class="tags">
|
|
875
|
+
|
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876
|
+
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877
|
+
</div><table class="source_code">
|
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878
|
+
<tr>
|
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879
|
+
<td>
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880
|
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<pre class="lines">
|
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881
|
+
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882
|
+
|
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|
+
50
|
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884
|
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51
|
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885
|
+
52</pre>
|
|
886
|
+
</td>
|
|
887
|
+
<td>
|
|
888
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 50</span>
|
|
889
|
+
|
|
890
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evaluate!'>evaluate!</span>
|
|
891
|
+
<span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evaluator'>evaluator</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span> <span class='kw'>self</span>
|
|
892
|
+
<span class='kw'>end</span></pre>
|
|
893
|
+
</td>
|
|
894
|
+
</tr>
|
|
895
|
+
</table>
|
|
896
|
+
</div>
|
|
897
|
+
|
|
898
|
+
<div class="method_details ">
|
|
899
|
+
<h3 class="signature " id="express!-instance_method">
|
|
900
|
+
|
|
901
|
+
- (<tt>Object</tt>) <strong>express!</strong>
|
|
902
|
+
|
|
903
|
+
|
|
904
|
+
|
|
905
|
+
|
|
906
|
+
|
|
907
|
+
</h3><div class="docstring">
|
|
908
|
+
<div class="discussion">
|
|
909
|
+
|
|
910
|
+
<p>Exoress this critter using the Expressor plugin.</p>
|
|
911
|
+
|
|
912
|
+
|
|
913
|
+
</div>
|
|
914
|
+
</div>
|
|
915
|
+
<div class="tags">
|
|
916
|
+
|
|
917
|
+
|
|
918
|
+
</div><table class="source_code">
|
|
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|
+
<tr>
|
|
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|
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<td>
|
|
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|
+
<pre class="lines">
|
|
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|
+
|
|
923
|
+
|
|
924
|
+
36
|
|
925
|
+
37
|
|
926
|
+
38</pre>
|
|
927
|
+
</td>
|
|
928
|
+
<td>
|
|
929
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 36</span>
|
|
930
|
+
|
|
931
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_express!'>express!</span>
|
|
932
|
+
<span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_expressor'>expressor</span><span class='period'>.</span><span class='id identifier rubyid_express!'>express!</span> <span class='kw'>self</span>
|
|
933
|
+
<span class='kw'>end</span></pre>
|
|
934
|
+
</td>
|
|
935
|
+
</tr>
|
|
936
|
+
</table>
|
|
937
|
+
</div>
|
|
938
|
+
|
|
939
|
+
<div class="method_details ">
|
|
940
|
+
<h3 class="signature " id="initialize_neurons!-instance_method">
|
|
941
|
+
|
|
942
|
+
- (<tt>Object</tt>) <strong>initialize_neurons!</strong>
|
|
943
|
+
|
|
944
|
+
|
|
945
|
+
|
|
946
|
+
|
|
947
|
+
|
|
948
|
+
</h3><div class="docstring">
|
|
949
|
+
<div class="discussion">
|
|
950
|
+
|
|
951
|
+
<p>This initializes neurons in preparation for recurrence. Note that the
|
|
952
|
+
Critter should already have expressed its genotype before this is called.</p>
|
|
953
|
+
|
|
954
|
+
|
|
955
|
+
</div>
|
|
956
|
+
</div>
|
|
957
|
+
<div class="tags">
|
|
958
|
+
|
|
959
|
+
|
|
960
|
+
</div><table class="source_code">
|
|
961
|
+
<tr>
|
|
962
|
+
<td>
|
|
963
|
+
<pre class="lines">
|
|
964
|
+
|
|
965
|
+
|
|
966
|
+
43
|
|
967
|
+
44
|
|
968
|
+
45</pre>
|
|
969
|
+
</td>
|
|
970
|
+
<td>
|
|
971
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 43</span>
|
|
972
|
+
|
|
973
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize_neurons!'>initialize_neurons!</span>
|
|
974
|
+
<span class='ivar'>@phenotype</span><span class='period'>.</span><span class='id identifier rubyid_initialize_neurons'>initialize_neurons</span>
|
|
975
|
+
<span class='kw'>end</span></pre>
|
|
976
|
+
</td>
|
|
977
|
+
</tr>
|
|
978
|
+
</table>
|
|
979
|
+
</div>
|
|
980
|
+
|
|
981
|
+
<div class="method_details ">
|
|
982
|
+
<h3 class="signature " id="ready_for_expression!-instance_method">
|
|
983
|
+
|
|
984
|
+
- (<tt>Object</tt>) <strong>ready_for_expression!</strong>
|
|
985
|
+
|
|
986
|
+
|
|
987
|
+
|
|
988
|
+
|
|
989
|
+
|
|
990
|
+
</h3><div class="docstring">
|
|
991
|
+
<div class="discussion">
|
|
992
|
+
|
|
993
|
+
<p>Get the Critter ready for the Expressor to express the geneotype.</p>
|
|
994
|
+
|
|
995
|
+
|
|
996
|
+
</div>
|
|
997
|
+
</div>
|
|
998
|
+
<div class="tags">
|
|
999
|
+
|
|
1000
|
+
|
|
1001
|
+
</div><table class="source_code">
|
|
1002
|
+
<tr>
|
|
1003
|
+
<td>
|
|
1004
|
+
<pre class="lines">
|
|
1005
|
+
|
|
1006
|
+
|
|
1007
|
+
29
|
|
1008
|
+
30
|
|
1009
|
+
31
|
|
1010
|
+
32
|
|
1011
|
+
33</pre>
|
|
1012
|
+
</td>
|
|
1013
|
+
<td>
|
|
1014
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/critter.rb', line 29</span>
|
|
1015
|
+
|
|
1016
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_ready_for_expression!'>ready_for_expression!</span>
|
|
1017
|
+
<span class='ivar'>@genotype</span><span class='period'>.</span><span class='id identifier rubyid_wire!'>wire!</span>
|
|
1018
|
+
<span class='ivar'>@phenotype</span> <span class='op'>=</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='const'>Critter</span><span class='op'>::</span><span class='const'>Phenotype</span><span class='lbracket'>[</span><span class='kw'>self</span><span class='rbracket'>]</span>
|
|
1019
|
+
<span class='ivar'>@phenotype</span>
|
|
1020
|
+
<span class='kw'>end</span></pre>
|
|
1021
|
+
</td>
|
|
1022
|
+
</tr>
|
|
1023
|
+
</table>
|
|
1024
|
+
</div>
|
|
1025
|
+
|
|
1026
|
+
</div>
|
|
1027
|
+
|
|
1028
|
+
</div>
|
|
1029
|
+
|
|
1030
|
+
<div id="footer">
|
|
1031
|
+
Generated on Sun Apr 13 15:54:02 2014 by
|
|
1032
|
+
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
|
|
1033
|
+
0.8.7.4 (ruby-2.1.1).
|
|
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|
+
</div>
|
|
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1036
|
+
</body>
|
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1037
|
+
</html>
|