rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
  22. data/.yardoc/objects/root.dat +0 -0
  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
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  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
  55. data/doc/NEAT/Graph.html +402 -0
  56. data/doc/NEAT/NeatException.html +123 -0
  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
  80. data/foo/icon.png +0 -0
  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
  101. data/public/background.png +0 -0
  102. data/public/background.xcf +0 -0
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  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
@@ -0,0 +1,997 @@
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>Gene.html - rubyneat 0.3.4</title>
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+
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+ <link href="../../../../fonts.css" rel="stylesheet">
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+ <link href="../../../../rdoc.css" rel="stylesheet">
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+
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../../../";
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+ </script>
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+
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+ <script src="../../../../js/jquery.js"></script>
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+ <script src="../../../../js/navigation.js"></script>
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+ <script src="../../../../js/search_index.js"></script>
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+ <script src="../../../../js/search.js"></script>
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+ <script src="../../../../js/searcher.js"></script>
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+ <script src="../../../../js/darkfish.js"></script>
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+
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+
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+ <body id="top" role="document" class="file">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../../../index.html" rel="home">Home</a>
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+ <div id="table-of-contents-navigation">
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+ <a href="../../../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ </div>
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+ <div id="project-metadata">
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+ <div id="fileindex-section" class="nav-section">
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+ <h3>Pages</h3>
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+ <ul class="link-list">
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+ <li><a href="../../../../Gemfile.html">Gemfile</a>
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+ <li><a href="../../../../Gemfile_lock.html">Gemfile.lock</a>
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+ <li><a href="../../../../Guardfile.html">Guardfile</a>
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+ <li><a href="../../../../Rakefile.html">Rakefile</a>
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+ <li><a href="../../../../doc/ControllerPoint_html.html">ControllerPoint.html</a>
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+ <li><a href="../../../../doc/CuteA_html.html">CuteA.html</a>
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+ <li><a href="../../../../doc/CuteB_html.html">CuteB.html</a>
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+ <li><a href="../../../../doc/DSL_html.html">DSL.html</a>
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+ <li><a href="../../../../doc/NEAT_html.html">NEAT.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes_html.html">BasicNeuronTypes.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html">BiasNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html">CosineNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/InputNeuron_html.html">InputNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html">SigmoidNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/SineNeuron_html.html">SineNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html">TanhNeuron.html</a>
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+ <li><a href="../../../../doc/NEAT/Critter/Genotype_html.html">Genotype.html</a>
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+ <li><a href="../../../../doc/NEAT/Critter/Genotype/Gene_html.html">Gene.html</a>
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+ <li><a href="../../../../doc/NEAT/Critter/Phenotype_html.html">Phenotype.html</a>
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+ <li><a href="../../../../doc/NEAT/Evaluator_html.html">Evaluator.html</a>
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+ <li><a href="../../../../doc/NEAT/Evolver_html.html">Evolver.html</a>
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+ <li><a href="../../../../doc/NEAT/Evolver/CritterOp_html.html">CritterOp.html</a>
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+ <li><a href="../../../../doc/NEAT/Expressor_html.html">Expressor.html</a>
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+ <li><a href="../../../../doc/NEAT/Graph_html.html">Graph.html</a>
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+ <li><a href="../../../../doc/NEAT/Graph/DependencyResolver_html.html">DependencyResolver.html</a>
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+ <li><a href="../../../../doc/NEAT/Graph/GraphException_html.html">GraphException.html</a>
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+ <li><a href="../../../../doc/NEAT/NeatException_html.html">NeatException.html</a>
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+ <li><a href="../../../../doc/NEAT/NeatOb_html.html">NeatOb.html</a>
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+ <li><a href="../../../../doc/NEAT/Neuron_html.html">Neuron.html</a>
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+ <li><a href="../../../../doc/NEAT/Operator_html.html">Operator.html</a>
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+ <li><a href="../../../../doc/NEAT/Population_html.html">Population.html</a>
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+ <li><a href="../../../../doc/NEAT/Trait_html.html">Trait.html</a>
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+ <li><a href="../../../../doc/_index_html.html">_index.html</a>
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+ <li><a href="../../../../doc/class_list_html.html">class_list.html</a>
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+ <li><a href="../../../../doc/css/common_css.html">common.css</a>
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+ <li><a href="../../../../doc/css/full_list_css.html">full_list.css</a>
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+ <li><a href="../../../../doc/css/style_css.html">style.css</a>
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+ <li><a href="../../../../doc/file_list_html.html">file_list.html</a>
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+ <li><a href="../../../../doc/frames_html.html">frames.html</a>
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+ <li><a href="../../../../doc/index_html.html">index.html</a>
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+ <li><a href="../../../../doc/js/full_list_js.html">full_list.js</a>
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+ <li><a href="../../../../doc/method_list_html.html">method_list.html</a>
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+ <li><a href="../../../../doc/top-level-namespace_html.html">top-level-namespace.html</a>
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+
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+ <li><a href="../../../../foo_dump_log.html">foo.dump.log</a>
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+
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+ <li><a href="../../../../rubyneat_gemspec.html">rubyneat.gemspec</a>
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+
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+ <li><a href="../../../../xordebug_log.html">xordebug.log</a>
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+
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+ <li><a href="../../../../xorsin_log.html">xorsin.log</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-label="Page doc/NEAT/Critter/Genotype/Gene.html">
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+
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+ <p>&lt;!DOCTYPE html PUBLIC “-//W3C//DTD XHTML 1.0 Transitional//EN”</p>
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+
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+ <pre>&quot;http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd&quot;&gt;</pre>
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+
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+ href="http://www.w3.org/1999/xhtml">www.w3.org/1999/xhtml</a>”
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+ xml:lang=“en” lang=“en”&gt;</p>
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+ &lt;meta http-equiv=&quot;Content-Type&quot; content=&quot;text/html; charset=utf-8&quot; /&gt;</pre>
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+
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+ <p>&lt;title&gt;</p>
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+
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+ <pre>Class: NEAT::Critter::Genotype::Gene
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+
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+ &amp;mdash; Documentation by YARD 0.8.7.3</pre>
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+
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+ <p>&lt;/title&gt;</p>
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+
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+ <pre>&lt;link rel=&quot;stylesheet&quot; href=&quot;../../../css/style.css&quot; type=&quot;text/css&quot; charset=&quot;utf-8&quot; /&gt;
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+ &lt;link rel=&quot;stylesheet&quot; href=&quot;../../../css/common.css&quot; type=&quot;text/css&quot; charset=&quot;utf-8&quot; /&gt;</pre>
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+ <p>&lt;script type=“text/javascript” charset=“utf-8”&gt;</p>
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+
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+ <pre>hasFrames = window.top.frames.main ? true : false;
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+ relpath = &#39;../../../&#39;;
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+ framesUrl = &quot;../../../frames.html#!&quot; + escape(window.location.href);</pre>
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+
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+ <p>&lt;/script&gt;</p>
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+ <pre>&lt;script type=&quot;text/javascript&quot; charset=&quot;utf-8&quot; src=&quot;../../../js/jquery.js&quot;&gt;&lt;/script&gt;
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+
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+ &lt;script type=&quot;text/javascript&quot; charset=&quot;utf-8&quot; src=&quot;../../../js/app.js&quot;&gt;&lt;/script&gt;
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+
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+ &lt;/head&gt;
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+ &lt;body&gt;
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+ &lt;div id=&quot;header&quot;&gt;
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+ &lt;div id=&quot;menu&quot;&gt;
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+
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+ &lt;a href=&quot;../../../_index.html&quot;&gt;Index (G)&lt;/a&gt; &amp;raquo;
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+ &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../../NEAT.html&quot; title=&quot;NEAT (module)&quot;&gt;NEAT&lt;/a&gt;&lt;/span&gt;&lt;/span&gt; &amp;raquo; &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../Critter.html&quot; title=&quot;NEAT::Critter (class)&quot;&gt;Critter&lt;/a&gt;&lt;/span&gt;&lt;/span&gt; &amp;raquo; &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../Genotype.html&quot; title=&quot;NEAT::Critter::Genotype (class)&quot;&gt;Genotype&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+ &amp;raquo;
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+ &lt;span class=&quot;title&quot;&gt;Gene&lt;/span&gt;
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+
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+ &lt;div class=&quot;noframes&quot;&gt;&lt;span class=&quot;title&quot;&gt;(&lt;/span&gt;&lt;a href=&quot;.&quot; target=&quot;_top&quot;&gt;no frames&lt;/a&gt;&lt;span class=&quot;title&quot;&gt;)&lt;/span&gt;&lt;/div&gt;</pre>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre> &lt;div id=&quot;search&quot;&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;class_list_link&quot;
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+ href=&quot;../../../class_list.html&quot;&gt;
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+ Class List
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+ &lt;/a&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;method_list_link&quot;
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+ href=&quot;../../../method_list.html&quot;&gt;
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+ Method List
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+ &lt;/a&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;file_list_link&quot;
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+ href=&quot;../../../file_list.html&quot;&gt;
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+ File List
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+ &lt;/a&gt;</pre>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre> &lt;div class=&quot;clear&quot;&gt;&lt;/div&gt;
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+ &lt;/div&gt;
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+
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+ &lt;iframe id=&quot;search_frame&quot;&gt;&lt;/iframe&gt;
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+
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+ &lt;div id=&quot;content&quot;&gt;&lt;h1&gt;Class: NEAT::Critter::Genotype::Gene</pre>
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+
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+ <p>&lt;/h1&gt;</p>
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+
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+ <p>&lt;dl class=“box”&gt;</p>
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+
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+ <pre>&lt;dt class=&quot;r1&quot;&gt;Inherits:&lt;/dt&gt;
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+ &lt;dd class=&quot;r1&quot;&gt;
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+ &lt;span class=&quot;inheritName&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+
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+ &lt;ul class=&quot;fullTree&quot;&gt;
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+ &lt;li&gt;Object&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;NEAT::Critter::Genotype::Gene&lt;/li&gt;
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+
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+ &lt;/ul&gt;
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+ &lt;a href=&quot;#&quot; class=&quot;inheritanceTree&quot;&gt;show all&lt;/a&gt;
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+
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+ &lt;/dd&gt;
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+
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+ &lt;dt class=&quot;r2 last&quot;&gt;Defined in:&lt;/dt&gt;
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+ &lt;dd class=&quot;r2 last&quot;&gt;lib/rubyneat/critter.rb&lt;/dd&gt;</pre>
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+
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+ <p>&lt;/dl&gt; &lt;div class=“clear”&gt;&lt;/div&gt;</p>
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+
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+ <p>&lt;h2&gt;Overview&lt;/h2&gt;&lt;div class=“docstring”&gt;</p>
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+
280
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
281
+
282
+ <p>&lt;h1 id=“label-Gene+Specification”&gt;Gene Specification&lt;/h1&gt;</p>
283
+
284
+ <p>&lt;p&gt;The Gene specifices a singlular input and output neuron, which
285
+ represents a connection between them, along with the weight of that
286
+ connection, which may be positive, negative, or zero.&lt;/p&gt;</p>
287
+
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+ <p>&lt;p&gt;There is also the enabled flag&lt;/p&gt;</p>
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+
290
+ <pre>&lt;/div&gt;</pre>
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+
292
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
294
+ <p>&lt;/div&gt;</p>
295
+
296
+ <pre>&lt;h2&gt;Instance Attribute Summary &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;&lt;/h2&gt;
297
+ &lt;ul class=&quot;summary&quot;&gt;
298
+
299
+ &lt;li class=&quot;public &quot;&gt;
300
+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
302
+ &lt;a href=&quot;#enabled-instance_method&quot; title=&quot;#enabled (instance method)&quot;&gt;- (Object) &lt;strong&gt;enabled&lt;/strong&gt; &lt;/a&gt;
303
+
304
+ &lt;/span&gt;
305
+
306
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
307
+
308
+ <p>&lt;p&gt;Is this gene enabled?.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
309
+
310
+ <p>&lt;/li&gt;</p>
311
+
312
+ <pre> &lt;li class=&quot;public &quot;&gt;
313
+ &lt;span class=&quot;summary_signature&quot;&gt;
314
+
315
+ &lt;a href=&quot;#genotype-instance_method&quot; title=&quot;#genotype (instance method)&quot;&gt;- (Object) &lt;strong&gt;genotype&lt;/strong&gt; &lt;/a&gt;
316
+
317
+ &lt;/span&gt;
318
+
319
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
320
+
321
+ <p>&lt;p&gt;parent genotype.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
322
+
323
+ <p>&lt;/li&gt;</p>
324
+
325
+ <pre> &lt;li class=&quot;public &quot;&gt;
326
+ &lt;span class=&quot;summary_signature&quot;&gt;
327
+
328
+ &lt;a href=&quot;#in_neuron-instance_method&quot; title=&quot;#in_neuron (instance method)&quot;&gt;- (Object) &lt;strong&gt;in_neuron&lt;/strong&gt; &lt;/a&gt;
329
+
330
+ &lt;/span&gt;
331
+
332
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
333
+
334
+ <p>&lt;p&gt;input neuron&amp;#39;s name (where our output goes) ouptut
335
+ neuron&amp;#39;s name (neuron to be queried).&lt;/p&gt;
336
+ &lt;/div&gt;&lt;/span&gt;</p>
337
+
338
+ <p>&lt;/li&gt;</p>
339
+
340
+ <pre> &lt;li class=&quot;public &quot;&gt;
341
+ &lt;span class=&quot;summary_signature&quot;&gt;
342
+
343
+ &lt;a href=&quot;#innovation-instance_method&quot; title=&quot;#innovation (instance method)&quot;&gt;- (Object) &lt;strong&gt;innovation&lt;/strong&gt; &lt;/a&gt;
344
+
345
+ &lt;/span&gt;
346
+
347
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
348
+
349
+ <p>&lt;p&gt;innovation number.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
350
+
351
+ <p>&lt;/li&gt;</p>
352
+
353
+ <pre> &lt;li class=&quot;public &quot;&gt;
354
+ &lt;span class=&quot;summary_signature&quot;&gt;
355
+
356
+ &lt;a href=&quot;#out_neuron-instance_method&quot; title=&quot;#out_neuron (instance method)&quot;&gt;- (Object) &lt;strong&gt;out_neuron&lt;/strong&gt; &lt;/a&gt;
357
+
358
+ &lt;/span&gt;
359
+
360
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
361
+
362
+ <p>&lt;p&gt;input neuron&amp;#39;s name (where our output goes) ouptut
363
+ neuron&amp;#39;s name (neuron to be queried).&lt;/p&gt;
364
+ &lt;/div&gt;&lt;/span&gt;</p>
365
+
366
+ <p>&lt;/li&gt;</p>
367
+
368
+ <pre> &lt;li class=&quot;public &quot;&gt;
369
+ &lt;span class=&quot;summary_signature&quot;&gt;
370
+
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+ &lt;a href=&quot;#weight-instance_method&quot; title=&quot;#weight (instance method)&quot;&gt;- (Object) &lt;strong&gt;weight&lt;/strong&gt; &lt;/a&gt;
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+
373
+ &lt;/span&gt;
374
+
375
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
376
+
377
+ <p>&lt;p&gt;weight of the connection.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
378
+
379
+ <p>&lt;/li&gt;</p>
380
+
381
+ <pre class="ruby"><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/ul&gt;
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+
383
+ &lt;h3 class=&quot;inherited&quot;&gt;Attributes inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../</span><span class="ruby-operator">..</span><span class="ruby-regexp">/NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/</span><span class="ruby-identifier">a</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/span&gt;&lt;/</span><span class="ruby-identifier">h3</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">p</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;inherited&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;object_link&#39;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;../../NeatOb.html#controller-instance_method&quot;</span> <span class="ruby-identifier">title</span>=<span class="ruby-node">&quot;NEAT::NeatOb#controller (method)&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-comment">#controller&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html#name-instance_method&quot; title=&quot;NEAT::NeatOb#name (method)&quot;&gt;#name&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</span>
385
+
386
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">h2</span><span class="ruby-operator">&gt;</span>
387
+ <span class="ruby-constant">Class</span> <span class="ruby-constant">Method</span> <span class="ruby-constant">Summary</span>
388
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">small</span><span class="ruby-operator">&gt;</span>(<span class="ruby-operator">&lt;</span><span class="ruby-identifier">a</span> <span class="ruby-identifier">href</span>=<span class="ruby-node">&quot;#&quot;</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_toggle&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-identifier">collapse</span><span class="ruby-operator">&lt;</span><span class="ruby-regexp">/a&gt;)&lt;/sm</span><span class="ruby-identifier">all</span><span class="ruby-operator">&gt;</span>
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+ <span class="ruby-operator">&lt;</span><span class="ruby-node">/h2&gt;
390
+
391
+ &lt;ul class=&quot;summary&quot;&gt;
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+
393
+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
396
+ &lt;a href=&quot;#%5B%5D-class_method&quot; title=&quot;[] (class method)&quot;&gt;+ (Object) &lt;strong&gt;[]&lt;/s</span><span class="ruby-identifier">trong</span><span class="ruby-operator">&gt;</span>(<span class="ruby-identifier">genotype</span>, <span class="ruby-identifier">input</span>, <span class="ruby-identifier">output</span>, <span class="ruby-identifier">weight</span> = <span class="ruby-value">0.0</span>, <span class="ruby-identifier">innov</span> = <span class="ruby-keyword">nil</span>) <span class="ruby-operator">&lt;</span><span class="ruby-regexp">/a&gt;
397
+
398
+ &lt;/s</span><span class="ruby-identifier">pan</span><span class="ruby-operator">&gt;</span>
399
+
400
+ <span class="ruby-operator">&lt;</span><span class="ruby-identifier">span</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&quot;summary_desc&quot;</span><span class="ruby-operator">&gt;</span><span class="ruby-operator">&lt;</span><span class="ruby-identifier">div</span> <span class="ruby-identifier">class</span>=<span class="ruby-string">&#39;inline&#39;</span><span class="ruby-operator">&gt;</span>
401
+ </pre>
402
+
403
+ <p>&lt;p&gt;Create a new Gene and set it up fully.&lt;/p&gt;
404
+ &lt;/div&gt;&lt;/span&gt;</p>
405
+
406
+ <p>&lt;/li&gt;</p>
407
+
408
+ <pre> &lt;/ul&gt;
409
+
410
+ &lt;h2&gt;
411
+ Instance Method Summary
412
+ &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;
413
+ &lt;/h2&gt;
414
+
415
+ &lt;ul class=&quot;summary&quot;&gt;
416
+
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+ &lt;li class=&quot;public &quot;&gt;
418
+ &lt;span class=&quot;summary_signature&quot;&gt;
419
+
420
+ &lt;a href=&quot;#disabled%3F-instance_method&quot; title=&quot;#disabled? (instance method)&quot;&gt;- (Boolean) &lt;strong&gt;disabled?&lt;/strong&gt; &lt;/a&gt;
421
+
422
+ &lt;/span&gt;
423
+
424
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/div&gt;&lt;/span&gt;</pre>
425
+
426
+ <p>&lt;/li&gt;</p>
427
+
428
+ <pre> &lt;li class=&quot;public &quot;&gt;
429
+ &lt;span class=&quot;summary_signature&quot;&gt;
430
+
431
+ &lt;a href=&quot;#enabled%3F-instance_method&quot; title=&quot;#enabled? (instance method)&quot;&gt;- (Boolean) &lt;strong&gt;enabled?&lt;/strong&gt; &lt;/a&gt;
432
+
433
+ &lt;/span&gt;
434
+
435
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/div&gt;&lt;/span&gt;</pre>
436
+
437
+ <p>&lt;/li&gt;</p>
438
+
439
+ <pre> &lt;li class=&quot;public &quot;&gt;
440
+ &lt;span class=&quot;summary_signature&quot;&gt;
441
+
442
+ &lt;a href=&quot;#initialize-instance_method&quot; title=&quot;#initialize (instance method)&quot;&gt;- (Gene) &lt;strong&gt;initialize&lt;/strong&gt;(genotype, &amp;amp;block) &lt;/a&gt;
443
+
444
+ &lt;/span&gt;
445
+
446
+ &lt;span class=&quot;note title constructor&quot;&gt;constructor&lt;/span&gt;
447
+
448
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
449
+
450
+ <p>&lt;p&gt;A new instance of Gene.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
451
+
452
+ <p>&lt;/li&gt;</p>
453
+
454
+ <pre> &lt;li class=&quot;public &quot;&gt;
455
+ &lt;span class=&quot;summary_signature&quot;&gt;
456
+
457
+ &lt;a href=&quot;#to_s-instance_method&quot; title=&quot;#to_s (instance method)&quot;&gt;- (Object) &lt;strong&gt;to_s&lt;/strong&gt; &lt;/a&gt;
458
+
459
+ (also: #dump_s)
460
+
461
+ &lt;/span&gt;
462
+
463
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;&lt;/div&gt;&lt;/span&gt;</pre>
464
+
465
+ <p>&lt;/li&gt;</p>
466
+
467
+ <pre> &lt;/ul&gt;
468
+
469
+ &lt;h3 class=&quot;inherited&quot;&gt;Methods inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/h3&gt;
470
+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html#log-instance_method&quot; title=&quot;NEAT::NeatOb#log (method)&quot;&gt;#log&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NeatOb.html#log-class_method&quot; title=&quot;NEAT::NeatOb.log (method)&quot;&gt;log&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
471
+
472
+ &lt;div id=&quot;constructor_details&quot; class=&quot;method_details_list&quot;&gt;
473
+ &lt;h2&gt;Constructor Details&lt;/h2&gt;
474
+
475
+ &lt;div class=&quot;method_details first&quot;&gt;
476
+ &lt;h3 class=&quot;signature first&quot; id=&quot;initialize-instance_method&quot;&gt;
477
+
478
+ - (&lt;tt&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;&quot; title=&quot;NEAT::Critter::Genotype::Gene (class)&quot;&gt;Gene&lt;/a&gt;&lt;/span&gt;&lt;/tt&gt;) &lt;strong&gt;initialize&lt;/strong&gt;(genotype, &amp;amp;block)</pre>
479
+
480
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
481
+
482
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
483
+
484
+ <p>&lt;p&gt;Returns a new instance of Gene&lt;/p&gt;</p>
485
+
486
+ <pre>&lt;/div&gt;</pre>
487
+
488
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
489
+
490
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
491
+
492
+ <pre>&lt;tr&gt;
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+ &lt;td&gt;
494
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
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+
496
+ <p>247 248 249 250 251 252 253 254&lt;/pre&gt;</p>
497
+
498
+ <pre>&lt;/td&gt;
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+ &lt;td&gt;
500
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 247&lt;/span&gt;</pre>
501
+
502
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
503
+ identifier rubyid_initialize&#39;&gt;initialize&lt;/span&gt;&lt;span
504
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
505
+ rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span
506
+ class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span
507
+ class=&#39;op&#39;&gt;&amp;amp;&lt;/span&gt;&lt;span class=&#39;id
508
+ identifier rubyid_block&#39;&gt;block&lt;/span&gt;&lt;span
509
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
510
+
511
+ <pre>&lt;span class=&#39;kw&#39;&gt;super&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_controller&#39;&gt;controller&lt;/span&gt;
512
+ &lt;span class=&#39;ivar&#39;&gt;@genotype&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;
513
+ &lt;span class=&#39;ivar&#39;&gt;@enabled&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;true&lt;/span&gt;
514
+ &lt;span class=&#39;ivar&#39;&gt;@innovation&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;NEAT&lt;/span&gt;&lt;span class=&#39;op&#39;&gt;::&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new_innovation&#39;&gt;new_innovation&lt;/span&gt;
515
+ &lt;span class=&#39;ivar&#39;&gt;@in_neuron&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@out_neuron&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;nil&lt;/span&gt;
516
+ &lt;span class=&#39;id identifier rubyid_block&#39;&gt;block&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span class=&#39;rparen&#39;&gt;)&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;unless&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_block&#39;&gt;block&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_nil?&#39;&gt;nil?&lt;/span&gt;</pre>
517
+
518
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
519
+
520
+ <pre> &lt;/td&gt;
521
+ &lt;/tr&gt;</pre>
522
+
523
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
524
+
525
+ <p>&lt;/div&gt;</p>
526
+
527
+ <pre>&lt;div id=&quot;instance_attr_details&quot; class=&quot;attr_details&quot;&gt;
528
+ &lt;h2&gt;Instance Attribute Details&lt;/h2&gt;
529
+
530
+ &lt;span id=&quot;enabled=-instance_method&quot;&gt;&lt;/span&gt;
531
+ &lt;div class=&quot;method_details first&quot;&gt;
532
+ &lt;h3 class=&quot;signature first&quot; id=&quot;enabled-instance_method&quot;&gt;
533
+
534
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;enabled&lt;/strong&gt;</pre>
535
+
536
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
537
+
538
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
539
+
540
+ <p>&lt;p&gt;Is this gene enabled?&lt;/p&gt;</p>
541
+
542
+ <pre>&lt;/div&gt;</pre>
543
+
544
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
545
+
546
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
547
+
548
+ <pre>&lt;tr&gt;
549
+ &lt;td&gt;
550
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
551
+
552
+ <p>245 246 247&lt;/pre&gt;</p>
553
+
554
+ <pre>&lt;/td&gt;
555
+ &lt;td&gt;
556
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 245&lt;/span&gt;</pre>
557
+
558
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
559
+ identifier rubyid_enabled&#39;&gt;enabled&lt;/span&gt;</p>
560
+
561
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@enabled&lt;/span&gt;</pre>
562
+
563
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
564
+
565
+ <pre> &lt;/td&gt;
566
+ &lt;/tr&gt;</pre>
567
+
568
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
569
+
570
+ <pre> &lt;span id=&quot;genotype=-instance_method&quot;&gt;&lt;/span&gt;
571
+ &lt;div class=&quot;method_details &quot;&gt;
572
+ &lt;h3 class=&quot;signature &quot; id=&quot;genotype-instance_method&quot;&gt;
573
+
574
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;genotype&lt;/strong&gt;</pre>
575
+
576
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
577
+
578
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
579
+
580
+ <p>&lt;p&gt;parent genotype&lt;/p&gt;</p>
581
+
582
+ <pre>&lt;/div&gt;</pre>
583
+
584
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
585
+
586
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
587
+
588
+ <pre>&lt;tr&gt;
589
+ &lt;td&gt;
590
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
591
+
592
+ <p>233 234 235&lt;/pre&gt;</p>
593
+
594
+ <pre>&lt;/td&gt;
595
+ &lt;td&gt;
596
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 233&lt;/span&gt;</pre>
597
+
598
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
599
+ identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;</p>
600
+
601
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@genotype&lt;/span&gt;</pre>
602
+
603
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
604
+
605
+ <pre> &lt;/td&gt;
606
+ &lt;/tr&gt;</pre>
607
+
608
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
609
+
610
+ <pre> &lt;span id=&quot;in_neuron=-instance_method&quot;&gt;&lt;/span&gt;
611
+ &lt;div class=&quot;method_details &quot;&gt;
612
+ &lt;h3 class=&quot;signature &quot; id=&quot;in_neuron-instance_method&quot;&gt;
613
+
614
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;in_neuron&lt;/strong&gt;</pre>
615
+
616
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
617
+
618
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
619
+
620
+ <p>&lt;p&gt;input neuron&amp;#39;s name (where our output goes) ouptut
621
+ neuron&amp;#39;s name (neuron to be queried)&lt;/p&gt;</p>
622
+
623
+ <pre>&lt;/div&gt;</pre>
624
+
625
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
626
+
627
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
628
+
629
+ <pre>&lt;tr&gt;
630
+ &lt;td&gt;
631
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
632
+
633
+ <p>240 241 242&lt;/pre&gt;</p>
634
+
635
+ <pre>&lt;/td&gt;
636
+ &lt;td&gt;
637
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 240&lt;/span&gt;</pre>
638
+
639
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
640
+ identifier rubyid_in_neuron&#39;&gt;in_neuron&lt;/span&gt;</p>
641
+
642
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@in_neuron&lt;/span&gt;</pre>
643
+
644
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
645
+
646
+ <pre> &lt;/td&gt;
647
+ &lt;/tr&gt;</pre>
648
+
649
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
650
+
651
+ <pre> &lt;span id=&quot;innovation=-instance_method&quot;&gt;&lt;/span&gt;
652
+ &lt;div class=&quot;method_details &quot;&gt;
653
+ &lt;h3 class=&quot;signature &quot; id=&quot;innovation-instance_method&quot;&gt;
654
+
655
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;innovation&lt;/strong&gt;</pre>
656
+
657
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
658
+
659
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
660
+
661
+ <p>&lt;p&gt;innovation number&lt;/p&gt;</p>
662
+
663
+ <pre>&lt;/div&gt;</pre>
664
+
665
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
666
+
667
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
668
+
669
+ <pre>&lt;tr&gt;
670
+ &lt;td&gt;
671
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
672
+
673
+ <p>236 237 238&lt;/pre&gt;</p>
674
+
675
+ <pre>&lt;/td&gt;
676
+ &lt;td&gt;
677
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 236&lt;/span&gt;</pre>
678
+
679
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
680
+ identifier rubyid_innovation&#39;&gt;innovation&lt;/span&gt;</p>
681
+
682
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@innovation&lt;/span&gt;</pre>
683
+
684
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
685
+
686
+ <pre> &lt;/td&gt;
687
+ &lt;/tr&gt;</pre>
688
+
689
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
690
+
691
+ <pre> &lt;span id=&quot;out_neuron=-instance_method&quot;&gt;&lt;/span&gt;
692
+ &lt;div class=&quot;method_details &quot;&gt;
693
+ &lt;h3 class=&quot;signature &quot; id=&quot;out_neuron-instance_method&quot;&gt;
694
+
695
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;out_neuron&lt;/strong&gt;</pre>
696
+
697
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
698
+
699
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
700
+
701
+ <p>&lt;p&gt;input neuron&amp;#39;s name (where our output goes) ouptut
702
+ neuron&amp;#39;s name (neuron to be queried)&lt;/p&gt;</p>
703
+
704
+ <pre>&lt;/div&gt;</pre>
705
+
706
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
707
+
708
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
709
+
710
+ <pre>&lt;tr&gt;
711
+ &lt;td&gt;
712
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
713
+
714
+ <p>240 241 242&lt;/pre&gt;</p>
715
+
716
+ <pre>&lt;/td&gt;
717
+ &lt;td&gt;
718
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 240&lt;/span&gt;</pre>
719
+
720
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
721
+ identifier rubyid_out_neuron&#39;&gt;out_neuron&lt;/span&gt;</p>
722
+
723
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@out_neuron&lt;/span&gt;</pre>
724
+
725
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
726
+
727
+ <pre> &lt;/td&gt;
728
+ &lt;/tr&gt;</pre>
729
+
730
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
731
+
732
+ <pre> &lt;span id=&quot;weight=-instance_method&quot;&gt;&lt;/span&gt;
733
+ &lt;div class=&quot;method_details &quot;&gt;
734
+ &lt;h3 class=&quot;signature &quot; id=&quot;weight-instance_method&quot;&gt;
735
+
736
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;weight&lt;/strong&gt;</pre>
737
+
738
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
739
+
740
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
741
+
742
+ <p>&lt;p&gt;weight of the connection&lt;/p&gt;</p>
743
+
744
+ <pre>&lt;/div&gt;</pre>
745
+
746
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
747
+
748
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
749
+
750
+ <pre>&lt;tr&gt;
751
+ &lt;td&gt;
752
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
753
+
754
+ <p>243 244 245&lt;/pre&gt;</p>
755
+
756
+ <pre>&lt;/td&gt;
757
+ &lt;td&gt;
758
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 243&lt;/span&gt;</pre>
759
+
760
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
761
+ identifier rubyid_weight&#39;&gt;weight&lt;/span&gt;</p>
762
+
763
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@weight&lt;/span&gt;</pre>
764
+
765
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
766
+
767
+ <pre> &lt;/td&gt;
768
+ &lt;/tr&gt;</pre>
769
+
770
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
771
+
772
+ <pre>&lt;/div&gt;
773
+
774
+ &lt;div id=&quot;class_method_details&quot; class=&quot;method_details_list&quot;&gt;
775
+ &lt;h2&gt;Class Method Details&lt;/h2&gt;
776
+
777
+ &lt;div class=&quot;method_details first&quot;&gt;
778
+ &lt;h3 class=&quot;signature first&quot; id=&quot;[]-class_method&quot;&gt;
779
+
780
+ + (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;[]&lt;/strong&gt;(genotype, input, output, weight = 0.0, innov = nil)</pre>
781
+
782
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
783
+
784
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
785
+
786
+ <p>&lt;p&gt;Create a new Gene and set it up fully. genotype – genotype input –
787
+ name of input neuron connection output – name of output neuron connection
788
+ weight – weight to give neuron (optional) innov – innovation number of gene
789
+ (optional)&lt;/p&gt;</p>
790
+
791
+ <pre>&lt;/div&gt;</pre>
792
+
793
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
794
+
795
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
796
+
797
+ <pre>&lt;tr&gt;
798
+ &lt;td&gt;
799
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
800
+
801
+ <p>265 266 267 268 269 270 271 272&lt;/pre&gt;</p>
802
+
803
+ <pre>&lt;/td&gt;
804
+ &lt;td&gt;
805
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 265&lt;/span&gt;</pre>
806
+
807
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span
808
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span
809
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span
810
+ class=&#39;op&#39;&gt;[]&lt;/span&gt;&lt;span
811
+ class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier
812
+ rubyid_genotype&#39;&gt;genotype&lt;/span&gt;&lt;span
813
+ class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier
814
+ rubyid_input&#39;&gt;input&lt;/span&gt;&lt;span
815
+ class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier
816
+ rubyid_output&#39;&gt;output&lt;/span&gt;&lt;span
817
+ class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier
818
+ rubyid_weight&#39;&gt;weight&lt;/span&gt; &lt;span
819
+ class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span
820
+ class=&#39;float&#39;&gt;0.0&lt;/span&gt;&lt;span
821
+ class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;id identifier
822
+ rubyid_innov&#39;&gt;innov&lt;/span&gt; &lt;span
823
+ class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span
824
+ class=&#39;kw&#39;&gt;nil&lt;/span&gt;&lt;span
825
+ class=&#39;rparen&#39;&gt;)&lt;/span&gt;</p>
826
+
827
+ <pre>&lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Gene&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_genotype&#39;&gt;genotype&lt;/span&gt;
828
+ &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_in_neuron&#39;&gt;in_neuron&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_input&#39;&gt;input&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_kind_of?&#39;&gt;kind_of?&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Symbol&lt;/span&gt;&lt;span class=&#39;rparen&#39;&gt;)&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;?&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_input&#39;&gt;input&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;:&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_input&#39;&gt;input&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_name&#39;&gt;name&lt;/span&gt;
829
+ &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_out_neuron&#39;&gt;out_neuron&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;lparen&#39;&gt;(&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_output&#39;&gt;output&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_kind_of?&#39;&gt;kind_of?&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Symbol&lt;/span&gt;&lt;span class=&#39;rparen&#39;&gt;)&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;?&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_output&#39;&gt;output&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;:&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_output&#39;&gt;output&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_name&#39;&gt;name&lt;/span&gt;
830
+ &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_weight&#39;&gt;weight&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_weight&#39;&gt;weight&lt;/span&gt;
831
+ &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_innovation&#39;&gt;innovation&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_innov&#39;&gt;innov&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;unless&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_innov&#39;&gt;innov&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_nil?&#39;&gt;nil?&lt;/span&gt;
832
+ &lt;span class=&#39;kw&#39;&gt;return&lt;/span&gt; &lt;span class=&#39;id identifier rubyid_g&#39;&gt;g&lt;/span&gt;</pre>
833
+
834
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
835
+
836
+ <pre> &lt;/td&gt;
837
+ &lt;/tr&gt;</pre>
838
+
839
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
840
+
841
+ <pre>&lt;/div&gt;
842
+
843
+ &lt;div id=&quot;instance_method_details&quot; class=&quot;method_details_list&quot;&gt;
844
+ &lt;h2&gt;Instance Method Details&lt;/h2&gt;
845
+
846
+ &lt;div class=&quot;method_details first&quot;&gt;
847
+ &lt;h3 class=&quot;signature first&quot; id=&quot;disabled?-instance_method&quot;&gt;
848
+
849
+ - (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;disabled?&lt;/strong&gt;</pre>
850
+
851
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
852
+
853
+ <pre>&lt;div class=&quot;discussion&quot;&gt;
854
+
855
+ &lt;/div&gt;</pre>
856
+
857
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
858
+
859
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
860
+
861
+ <pre>&lt;li&gt;
862
+
863
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
864
+
865
+ &lt;/li&gt;</pre>
866
+
867
+ <p>&lt;/ul&gt;</p>
868
+
869
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
870
+
871
+ <pre>&lt;tr&gt;
872
+ &lt;td&gt;
873
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
874
+
875
+ <p>257&lt;/pre&gt;</p>
876
+
877
+ <pre>&lt;/td&gt;
878
+ &lt;td&gt;
879
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 257&lt;/span&gt;</pre>
880
+
881
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
882
+ identifier rubyid_disabled?&#39;&gt;disabled?&lt;/span&gt; &lt;span
883
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
884
+ class=&#39;kw&#39;&gt;not&lt;/span&gt; &lt;span class=&#39;id identifier
885
+ rubyid_enabled?&#39;&gt;enabled?&lt;/span&gt; &lt;span
886
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
887
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
888
+
889
+ <pre> &lt;/td&gt;
890
+ &lt;/tr&gt;</pre>
891
+
892
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
893
+
894
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
895
+ &lt;h3 class=&quot;signature &quot; id=&quot;enabled?-instance_method&quot;&gt;
896
+
897
+ - (&lt;tt&gt;Boolean&lt;/tt&gt;) &lt;strong&gt;enabled?&lt;/strong&gt;</pre>
898
+
899
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
900
+
901
+ <pre>&lt;div class=&quot;discussion&quot;&gt;
902
+
903
+ &lt;/div&gt;</pre>
904
+
905
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
906
+
907
+ <p>&lt;p class=“tag_title”&gt;Returns:&lt;/p&gt; &lt;ul class=“return”&gt;</p>
908
+
909
+ <pre>&lt;li&gt;
910
+
911
+ &lt;span class=&#39;type&#39;&gt;(&lt;tt&gt;Boolean&lt;/tt&gt;)&lt;/span&gt;
912
+
913
+ &lt;/li&gt;</pre>
914
+
915
+ <p>&lt;/ul&gt;</p>
916
+
917
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
918
+
919
+ <pre>&lt;tr&gt;
920
+ &lt;td&gt;
921
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
922
+
923
+ <p>256&lt;/pre&gt;</p>
924
+
925
+ <pre>&lt;/td&gt;
926
+ &lt;td&gt;
927
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 256&lt;/span&gt;</pre>
928
+
929
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
930
+ identifier rubyid_enabled?&#39;&gt;enabled?&lt;/span&gt; &lt;span
931
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
932
+ class=&#39;ivar&#39;&gt;@enabled&lt;/span&gt; &lt;span
933
+ class=&#39;semicolon&#39;&gt;;&lt;/span&gt; &lt;span
934
+ class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
935
+
936
+ <pre> &lt;/td&gt;
937
+ &lt;/tr&gt;</pre>
938
+
939
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
940
+
941
+ <pre> &lt;div class=&quot;method_details &quot;&gt;
942
+ &lt;h3 class=&quot;signature &quot; id=&quot;to_s-instance_method&quot;&gt;
943
+
944
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;to_s&lt;/strong&gt;
945
+
946
+ &lt;span class=&quot;aliases&quot;&gt;Also known as:
947
+ &lt;span class=&quot;names&quot;&gt;&lt;span id=&#39;dump_s-instance_method&#39;&gt;dump_s&lt;/span&gt;&lt;/span&gt;
948
+ &lt;/span&gt;</pre>
949
+
950
+ <p>&lt;/h3&gt;&lt;table class=“source_code”&gt;</p>
951
+
952
+ <pre>&lt;tr&gt;
953
+ &lt;td&gt;
954
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
955
+
956
+ <p>274 275 276&lt;/pre&gt;</p>
957
+
958
+ <pre>&lt;/td&gt;
959
+ &lt;td&gt;
960
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/critter.rb&#39;, line 274&lt;/span&gt;</pre>
961
+
962
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
963
+ identifier rubyid_to_s&#39;&gt;to_s&lt;/span&gt;</p>
964
+
965
+ <pre>&lt;span class=&#39;kw&#39;&gt;super&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;+&lt;/span&gt; &lt;span class=&#39;tstring&#39;&gt;&lt;span class=&#39;tstring_beg&#39;&gt;&amp;quot;&lt;/span&gt;&lt;span class=&#39;tstring_content&#39;&gt;[i%s,w%s,%s]&lt;/span&gt;&lt;span class=&#39;tstring_end&#39;&gt;&amp;quot;&lt;/span&gt;&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;%&lt;/span&gt; &lt;span class=&#39;lbracket&#39;&gt;[&lt;/span&gt;&lt;span class=&#39;ivar&#39;&gt;@innovation&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@weight&lt;/span&gt;&lt;span class=&#39;comma&#39;&gt;,&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;self&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_enabled?&#39;&gt;enabled?&lt;/span&gt;&lt;span class=&#39;rbracket&#39;&gt;]&lt;/span&gt;</pre>
966
+
967
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
968
+
969
+ <pre> &lt;/td&gt;
970
+ &lt;/tr&gt;</pre>
971
+
972
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
973
+
974
+ <pre>&lt;/div&gt;</pre>
975
+
976
+ <p>&lt;/div&gt;</p>
977
+
978
+ <pre> &lt;div id=&quot;footer&quot;&gt;
979
+ Generated on Sun Mar 16 16:36:51 2014 by
980
+ &lt;a href=&quot;http://yardoc.org&quot; title=&quot;Yay! A Ruby Documentation Tool&quot; target=&quot;_parent&quot;&gt;yard&lt;/a&gt;
981
+ 0.8.7.3 (ruby-2.1.1).</pre>
982
+
983
+ <p>&lt;/div&gt;</p>
984
+
985
+ <pre>&lt;/body&gt;</pre>
986
+
987
+ <p>&lt;/html&gt;</p>
988
+ </main>
989
+
990
+
991
+
992
+ <footer id="validator-badges" role="contentinfo">
993
+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
994
+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
995
+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
996
+ </footer>
997
+