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<div id="content"><h1>Class: NEAT::Evolver::CritterOp</pre>
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<p><p>A set of Critter Genotype operators.</p></p>
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a gene to the genome Unlike adding a new neuron, adding a new gene could
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<a href="#initialize-instance_method" title="#initialize (instance method)">- (CritterOp) <strong>initialize</strong>(evol) </a>
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<p><p>A new instance of CritterOp.</p> </div></span></p>
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<a href="#reenable_gene%21-instance_method" title="#reenable_gene! (instance method)">- (Object) <strong>reenable_gene!</strong>(crit) </a>
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- (<tt><span class='object_link'><a href="" title="NEAT::Evolver::CritterOp (class)">CritterOp</a></span></tt>) <strong>initialize</strong>(evol)</pre>
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<p><p>Returns a new instance of CritterOp</p></p>
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 254</span></pre>
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<span class='ivar'>@evolver</span> <span class='op'>=</span> <span class='id identifier rubyid_evol'>evol</span>
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<span class='ivar'>@npop</span> <span class='op'>=</span> <span class='id identifier rubyid_evol'>evol</span><span class='period'>.</span><span class='id identifier rubyid_npop'>npop</span></pre>
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<p><span class='kw'>end</span></pre></p>
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+
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|
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<pre> </td>
|
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</tr></pre>
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|
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<p></table> </div></p>
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+
|
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<p></div></p>
|
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+
|
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+
<pre><div id="instance_method_details" class="method_details_list">
|
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|
+
<h2>Instance Method Details</h2>
|
|
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|
+
|
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|
+
<div class="method_details first">
|
|
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|
+
<h3 class="signature first" id="add_gene!-instance_method">
|
|
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|
+
|
|
438
|
+
- (<tt>Object</tt>) <strong>add_gene!</strong>(crit)</pre>
|
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|
+
|
|
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|
+
<p></h3><div class=“docstring”></p>
|
|
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|
+
|
|
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|
+
<pre><div class="discussion"></pre>
|
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|
+
|
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|
+
<p><h1 id=“label-Add+a+gene+to+the+genome”>Add a gene to the
|
|
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|
+
genome</h1></p>
|
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+
|
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|
+
<p><p>Unlike adding a new neuron, adding a new gene could result in a
|
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|
+
circular dependency. If so, and if recurrency is switched off, we must
|
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|
+
detect this condition and switch off the offending neurons.</p></p>
|
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|
+
|
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|
+
<p><p>Obviously, this might result in a loss of functionality, but oh
|
|
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|
+
well.</p></p>
|
|
453
|
+
|
|
454
|
+
<p><p>An easy and obvious check is to make sure we don&#39;t accept
|
|
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|
+
any inputs from output neurons, and we don&#39;t do any outputs to
|
|
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|
+
input neurons.</p></p>
|
|
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|
+
|
|
458
|
+
<p><p>Constructs for handling recurrency are present in
|
|
459
|
+
Expressor.</p></p>
|
|
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|
+
|
|
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|
+
<pre></div></pre>
|
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|
+
|
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|
+
<p></div> <div class=“tags”></p>
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+
|
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+
<p></div><table class=“source_code”></p>
|
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|
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+
<pre><tr>
|
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|
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<td>
|
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<pre class="lines"></pre>
|
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|
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<p>290 291 292 293 294 295 296 297 298 299 300</pre></p>
|
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+
|
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|
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<pre></td>
|
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|
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<td>
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 290</span></pre>
|
|
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|
+
|
|
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|
+
<p><span class='kw'>def</span> <span class='id
|
|
478
|
+
identifier rubyid_add_gene!'>add_gene!</span><span
|
|
479
|
+
class='lparen'>(</span><span class='id identifier
|
|
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|
+
rubyid_crit'>crit</span><span
|
|
481
|
+
class='rparen'>)</span></p>
|
|
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|
+
|
|
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|
+
<pre><span class='id identifier rubyid_n1'>n1</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_neurons'>neurons</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span> <span class='comment'># input</pre>
|
|
484
|
+
|
|
485
|
+
<p></span> <span class='id identifier
|
|
486
|
+
rubyid_n2'>n2</span> <span
|
|
487
|
+
class='op'>=</span> <span class='id identifier
|
|
488
|
+
rubyid_crit'>crit</span><span
|
|
489
|
+
class='period'>.</span><span class='id identifier
|
|
490
|
+
rubyid_genotype'>genotype</span><span
|
|
491
|
+
class='period'>.</span><span class='id identifier
|
|
492
|
+
rubyid_neurons'>neurons</span><span
|
|
493
|
+
class='period'>.</span><span class='id identifier
|
|
494
|
+
rubyid_values'>values</span><span
|
|
495
|
+
class='period'>.</span><span class='id identifier
|
|
496
|
+
rubyid_sample'>sample</span> <span
|
|
497
|
+
class='comment'># output </span></p>
|
|
498
|
+
|
|
499
|
+
<pre><span class='comment'># Sanity checks!</pre>
|
|
500
|
+
|
|
501
|
+
<p></span> <span class='kw'>unless</span> <span
|
|
502
|
+
class='id identifier rubyid_n1'>n1</span> <span
|
|
503
|
+
class='op'>==</span> <span class='id identifier
|
|
504
|
+
rubyid_n2'>n2</span> <span
|
|
505
|
+
class='kw'>or</span> <span class='id identifier
|
|
506
|
+
rubyid_n1'>n1</span><span
|
|
507
|
+
class='period'>.</span><span class='id identifier
|
|
508
|
+
rubyid_output?'>output?</span> <span
|
|
509
|
+
class='kw'>or</span> <span class='id identifier
|
|
510
|
+
rubyid_n2'>n2</span><span
|
|
511
|
+
class='period'>.</span><span class='id identifier
|
|
512
|
+
rubyid_input?'>input?</span></p>
|
|
513
|
+
|
|
514
|
+
<pre> <span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_n1'>n1</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_n2'>n2</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='const'>NEAT</span><span class='op'>::</span><span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_gaussian'>gaussian</span><span class='rbracket'>]</span>
|
|
515
|
+
<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_genes'>add_genes</span> <span class='id identifier rubyid_gene'>gene</span>
|
|
516
|
+
<span class='id identifier rubyid_log'>log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>add_gene! Added gene </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_gene'>gene</span><span class='embexpr_end'>}</span><span class='tstring_content'>(</span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_n1'>n1</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='embexpr_end'>}</span><span class='tstring_content'> -&gt; </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_n2'>n2</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='embexpr_end'>}</span><span class='tstring_content'>) to </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_crit'>crit</span><span class='embexpr_end'>}</span><span class='tstring_end'>&quot;</span></span>
|
|
517
|
+
<span class='kw'>end</span></pre>
|
|
518
|
+
|
|
519
|
+
<p><span class='kw'>end</span></pre></p>
|
|
520
|
+
|
|
521
|
+
<pre> </td>
|
|
522
|
+
</tr></pre>
|
|
523
|
+
|
|
524
|
+
<p></table> </div></p>
|
|
525
|
+
|
|
526
|
+
<pre> <div class="method_details ">
|
|
527
|
+
<h3 class="signature " id="add_neuron!-instance_method">
|
|
528
|
+
|
|
529
|
+
- (<tt>Object</tt>) <strong>add_neuron!</strong>(crit)</pre>
|
|
530
|
+
|
|
531
|
+
<p></h3><div class=“docstring”></p>
|
|
532
|
+
|
|
533
|
+
<pre><div class="discussion"></pre>
|
|
534
|
+
|
|
535
|
+
<p><h1 id=“label-Add+a+neuron+to+given+critter”>Add a neuron to given
|
|
536
|
+
critter</h1></p>
|
|
537
|
+
|
|
538
|
+
<p><p>Here, we add a neuron by randomly picking a gene, and split it
|
|
539
|
+
into two genes with an intervening neuron. The old gene is not replaced,
|
|
540
|
+
but disabled. 2 new genes are created along with the new neuron.</p></p>
|
|
541
|
+
|
|
542
|
+
<pre></div></pre>
|
|
543
|
+
|
|
544
|
+
<p></div> <div class=“tags”></p>
|
|
545
|
+
|
|
546
|
+
<p></div><table class=“source_code”></p>
|
|
547
|
+
|
|
548
|
+
<pre><tr>
|
|
549
|
+
<td>
|
|
550
|
+
<pre class="lines"></pre>
|
|
551
|
+
|
|
552
|
+
<p>265 266 267 268 269 270 271 272 273 274</pre></p>
|
|
553
|
+
|
|
554
|
+
<pre></td>
|
|
555
|
+
<td>
|
|
556
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 265</span></pre>
|
|
557
|
+
|
|
558
|
+
<p><span class='kw'>def</span> <span class='id
|
|
559
|
+
identifier rubyid_add_neuron!'>add_neuron!</span><span
|
|
560
|
+
class='lparen'>(</span><span class='id identifier
|
|
561
|
+
rubyid_crit'>crit</span><span
|
|
562
|
+
class='rparen'>)</span></p>
|
|
563
|
+
|
|
564
|
+
<pre><span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
|
|
565
|
+
<span class='id identifier rubyid_neu'>neu</span> <span class='op'>=</span> <span class='id identifier rubyid_controller'>controller</span><span class='period'>.</span><span class='id identifier rubyid_neural_hidden'>neural_hidden</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='id identifier rubyid_controller'>controller</span><span class='rparen'>)</span>
|
|
566
|
+
<span class='id identifier rubyid_g1'>g1</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_in_neuron'>in_neuron</span><span class='comma'>,</span> <span class='id identifier rubyid_neu'>neu</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_weight'>weight</span><span class='rbracket'>]</span>
|
|
567
|
+
<span class='id identifier rubyid_g2'>g2</span> <span class='op'>=</span> <span class='const'>Critter</span><span class='op'>::</span><span class='const'>Genotype</span><span class='op'>::</span><span class='const'>Gene</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='comma'>,</span> <span class='id identifier rubyid_neu'>neu</span><span class='period'>.</span><span class='id identifier rubyid_name'>name</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_out_neuron'>out_neuron</span><span class='comma'>,</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_weight'>weight</span><span class='rbracket'>]</span>
|
|
568
|
+
<span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled'>enabled</span> <span class='op'>=</span> <span class='kw'>false</span>
|
|
569
|
+
<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_neurons'>add_neurons</span> <span class='id identifier rubyid_neu'>neu</span>
|
|
570
|
+
<span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_add_genes'>add_genes</span> <span class='id identifier rubyid_g1'>g1</span><span class='comma'>,</span> <span class='id identifier rubyid_g2'>g2</span>
|
|
571
|
+
<span class='id identifier rubyid_log'>log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='tstring'><span class='tstring_beg'>&quot;</span><span class='tstring_content'>add_neuron!: neu </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_neu'>neu</span><span class='embexpr_end'>}</span><span class='tstring_content'>, g1 </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_g1'>g1</span><span class='embexpr_end'>}</span><span class='tstring_content'>, g2 </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_g2'>g2</span><span class='embexpr_end'>}</span><span class='tstring_end'>&quot;</span></span></pre>
|
|
572
|
+
|
|
573
|
+
<p><span class='kw'>end</span></pre></p>
|
|
574
|
+
|
|
575
|
+
<pre> </td>
|
|
576
|
+
</tr></pre>
|
|
577
|
+
|
|
578
|
+
<p></table> </div></p>
|
|
579
|
+
|
|
580
|
+
<pre> <div class="method_details ">
|
|
581
|
+
<h3 class="signature " id="disable_gene!-instance_method">
|
|
582
|
+
|
|
583
|
+
- (<tt>Object</tt>) <strong>disable_gene!</strong>(crit)</pre>
|
|
584
|
+
|
|
585
|
+
<p></h3><div class=“docstring”></p>
|
|
586
|
+
|
|
587
|
+
<pre><div class="discussion"></pre>
|
|
588
|
+
|
|
589
|
+
<p><p>Pick an enabled gene at random and disable it.</p></p>
|
|
590
|
+
|
|
591
|
+
<pre></div></pre>
|
|
592
|
+
|
|
593
|
+
<p></div> <div class=“tags”></p>
|
|
594
|
+
|
|
595
|
+
<p></div><table class=“source_code”></p>
|
|
596
|
+
|
|
597
|
+
<pre><tr>
|
|
598
|
+
<td>
|
|
599
|
+
<pre class="lines"></pre>
|
|
600
|
+
|
|
601
|
+
<p>303 304 305 306</pre></p>
|
|
602
|
+
|
|
603
|
+
<pre></td>
|
|
604
|
+
<td>
|
|
605
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 303</span></pre>
|
|
606
|
+
|
|
607
|
+
<p><span class='kw'>def</span> <span class='id
|
|
608
|
+
identifier rubyid_disable_gene!'>disable_gene!</span><span
|
|
609
|
+
class='lparen'>(</span><span class='id identifier
|
|
610
|
+
rubyid_crit'>crit</span><span
|
|
611
|
+
class='rparen'>)</span></p>
|
|
612
|
+
|
|
613
|
+
<pre><span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_gene'>gene</span><span class='op'>|</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_disabled?'>disabled?</span> <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
|
|
614
|
+
<span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled'>enabled</span> <span class='op'>=</span> <span class='kw'>false</span> <span class='kw'>unless</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span></pre>
|
|
615
|
+
|
|
616
|
+
<p><span class='kw'>end</span></pre></p>
|
|
617
|
+
|
|
618
|
+
<pre> </td>
|
|
619
|
+
</tr></pre>
|
|
620
|
+
|
|
621
|
+
<p></table> </div></p>
|
|
622
|
+
|
|
623
|
+
<pre> <div class="method_details ">
|
|
624
|
+
<h3 class="signature " id="reenable_gene!-instance_method">
|
|
625
|
+
|
|
626
|
+
- (<tt>Object</tt>) <strong>reenable_gene!</strong>(crit)</pre>
|
|
627
|
+
|
|
628
|
+
<p></h3><div class=“docstring”></p>
|
|
629
|
+
|
|
630
|
+
<pre><div class="discussion"></pre>
|
|
631
|
+
|
|
632
|
+
<p><p>Pick a disabled gene at random and reenable it.</p></p>
|
|
633
|
+
|
|
634
|
+
<pre></div></pre>
|
|
635
|
+
|
|
636
|
+
<p></div> <div class=“tags”></p>
|
|
637
|
+
|
|
638
|
+
<p></div><table class=“source_code”></p>
|
|
639
|
+
|
|
640
|
+
<pre><tr>
|
|
641
|
+
<td>
|
|
642
|
+
<pre class="lines"></pre>
|
|
643
|
+
|
|
644
|
+
<p>309 310 311 312</pre></p>
|
|
645
|
+
|
|
646
|
+
<pre></td>
|
|
647
|
+
<td>
|
|
648
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/evolver.rb', line 309</span></pre>
|
|
649
|
+
|
|
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<pre><span class='id identifier rubyid_gene'>gene</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_genotype'>genotype</span><span class='period'>.</span><span class='id identifier rubyid_genes'>genes</span><span class='period'>.</span><span class='id identifier rubyid_values'>values</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_gene'>gene</span><span class='op'>|</span> <span class='id identifier rubyid_gene'>gene</span><span class='period'>.</span><span class='id identifier rubyid_enabled?'>enabled?</span> <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_sample'>sample</span>
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