rubyneat 0.3.5.alpha.2
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data/rdoc/NEAT/DSL.html
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 63</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">compare</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">compare_func</span> = <span class="ruby-identifier">block</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 81</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">condition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 69</span>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 15</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">define</span>(<span class="ruby-identifier">name</span> = <span class="ruby-constant">NEAT</span>.<span class="ruby-identifier">random_name_generator</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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[
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].<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">iometh</span><span class="ruby-operator">|</span>
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def #{iometh}(nodes = nil, &block)
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neui = unless nodes.nil?
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else
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end
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end]</span>
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<p><a href="DSL.html">DSL</a> – Run evolution</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 39</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evolve</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-comment"># Query function is called with the sequence (time evolution) number,</span>
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<span class="ruby-comment"># and returns an array or hash of parameters that will be given</span>
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<span class="ruby-comment"># to the input nodes. In the case of hash, the keys in the hash</span>
|
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<span class="ruby-comment"># shall correspond to the names given to the input neurons.</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">query</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">query_func</span> = <span class="ruby-identifier">block</span>
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">recurrence</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">recurrence_func</span> = <span class="ruby-identifier">block</span>
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<span class="ruby-keyword">end</span>
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<span class="ruby-comment"># fitness function calls the block with 2 vectors or two hashes, input and output</span>
|
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<span class="ruby-comment"># vectors of the critter being evaluated for fitness, as well as a sequence</span>
|
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<span class="ruby-comment"># number that can be used to index what the actual output should be.</span>
|
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|
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<span class="ruby-comment"># |vin, vout, seq|</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">fitness_func</span> = <span class="ruby-identifier">block</span>
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<span class="ruby-keyword">end</span>
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|
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<span class="ruby-comment"># Fitness ordering -- given 2 fitness numbers,</span>
|
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<span class="ruby-comment"># use the <=> to compare them (or the equivalent, following</span>
|
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<span class="ruby-comment"># the +1, 0, -1 that is in the sense of <=>)</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">compare</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">compare_func</span> = <span class="ruby-identifier">block</span>
|
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<span class="ruby-keyword">end</span>
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|
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<span class="ruby-comment"># Calculation to add the cost to the fitness, resulting in a fitness</span>
|
|
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|
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<span class="ruby-comment"># that incorporates the cost for sorting purposes.</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">cost</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
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|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">cost_func</span> = <span class="ruby-identifier">block</span>
|
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<span class="ruby-keyword">end</span>
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|
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<span class="ruby-comment"># Stop the progression once the fitness criteria is reached</span>
|
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<span class="ruby-comment"># for the most fit critter</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">stop_on_fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">stop_on_fit_func</span> = <span class="ruby-identifier">block</span>
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<span class="ruby-keyword">end</span>
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<span class="ruby-comment"># Helper function to</span>
|
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|
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<span class="ruby-comment"># Condition boolean vectors to be +1 if true, -1 if false (0 if sigmoid)</span>
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">condition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
|
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+
<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">b</span><span class="ruby-operator">|</span> <span class="ruby-identifier">b</span> <span class="ruby-operator">?</span> <span class="ruby-value">1</span> <span class="ruby-operator">:</span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0</span> <span class="ruby-operator">:</span> <span class="ruby-value">-1</span>)}
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<span class="ruby-keyword">end</span>
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|
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<span class="ruby-comment"># Helper function to</span>
|
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<span class="ruby-comment"># Uncondition boolean vectors to be +1 if true, -1 if false</span>
|
|
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<span class="ruby-comment"># FIXME we need a better discrimination function</span>
|
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">uncondition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
|
|
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|
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<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">o</span><span class="ruby-operator">|</span> <span class="ruby-identifier">o</span> <span class="ruby-operator">></span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0.5</span> <span class="ruby-operator">:</span> <span class="ruby-value">0</span>) <span class="ruby-operator">?</span> <span class="ruby-keyword">true</span> <span class="ruby-operator">:</span> <span class="ruby-keyword">false</span>}
|
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<span class="ruby-keyword">end</span>
|
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|
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<span class="ruby-comment"># Helper function to do a simple fitness calculation</span>
|
|
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<span class="ruby-comment"># on the basis of the sum of the square of the diffences</span>
|
|
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<span class="ruby-comment"># of the element in the two vectors.</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">simple_fitness_error</span>(<span class="ruby-identifier">v1</span>, <span class="ruby-identifier">v2</span>)
|
|
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|
+
<span class="ruby-identifier">sqrt</span> <span class="ruby-identifier">v1</span>.<span class="ruby-identifier">zip</span>(<span class="ruby-identifier">v2</span>).<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> (<span class="ruby-identifier">a</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">**</span> <span class="ruby-value">2.0</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">c</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c</span>}
|
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|
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<span class="ruby-keyword">end</span>
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<p>fitness function calls the block with 2 vectors or two hashes, input and
|
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output vectors of the critter being evaluated for fitness, as well as a
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sequence number that can be used to index what the actual output should be.
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|vin, vout, seq|</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 56</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">fitness_func</span> = <span class="ruby-identifier">block</span>
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class="method-args">(m, *args, &block)</span>
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<p>This is used to handle the details of our <a href="DSL.html">DSL</a>.</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 114</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">method_missing</span>(<span class="ruby-identifier">m</span>, <span class="ruby-operator">*</span><span class="ruby-identifier">args</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
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<span class="ruby-comment"># we want to catch parameters settings here.</span>
|
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<span class="ruby-keyword">if</span> <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">respond_to?</span> (<span class="ruby-identifier">assignment</span> = (<span class="ruby-identifier">m</span>.<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">'='</span>).<span class="ruby-identifier">to_sym</span>)
|
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<span class="ruby-identifier">raise</span> <span class="ruby-constant">NeatException</span>.<span class="ruby-identifier">new</span>(<span class="ruby-string">"Missing value(s) to %s"</span> <span class="ruby-operator">%</span> <span class="ruby-identifier">m</span>) <span class="ruby-keyword">if</span> <span class="ruby-identifier">args</span>.<span class="ruby-identifier">empty?</span>
|
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<span class="ruby-identifier">val</span> = (<span class="ruby-identifier">args</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-value">1</span>) <span class="ruby-operator">?</span> <span class="ruby-identifier">args</span>[<span class="ruby-value">0</span>] <span class="ruby-operator">:</span> <span class="ruby-identifier">args</span>
|
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<span class="ruby-identifier">$log</span>.<span class="ruby-identifier">debug</span> { <span class="ruby-string">"Caught method %s with parameter of %s"</span> <span class="ruby-operator">%</span> [<span class="ruby-identifier">assignment</span>, <span class="ruby-identifier">val</span>] }
|
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<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">send</span>(<span class="ruby-identifier">assignment</span>, <span class="ruby-identifier">val</span>)
|
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<span class="ruby-keyword">else</span>
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<span class="ruby-keyword">super</span>
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<span class="ruby-keyword">end</span>
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<span class="ruby-keyword">end</span></pre>
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<div id="method-i-query" class="method-detail ">
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<div class="method-heading">
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<span class="method-name">query</span><span
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class="method-args">(&block)</span>
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<p>Query function is called with the sequence (time evolution) number, and
|
|
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|
+
returns an array or hash of parameters that will be given to the input
|
|
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|
+
nodes. In the case of hash, the keys in the hash shall correspond to the
|
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+
names given to the input neurons.</p>
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|
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<div class="method-source-code" id="query-source">
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 44</span>
|
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">query</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
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|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">query_func</span> = <span class="ruby-identifier">block</span>
|
|
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|
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<span class="ruby-keyword">end</span></pre>
|
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|
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</div>
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</div>
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<div id="method-i-recurrence" class="method-detail ">
|
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|
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|
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<div class="method-heading">
|
|
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|
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<span class="method-name">recurrence</span><span
|
|
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|
+
class="method-args">(&block)</span>
|
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|
+
|
|
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|
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<span class="method-click-advice">click to toggle source</span>
|
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|
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|
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|
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</div>
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|
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|
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|
|
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|
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<div class="method-source-code" id="recurrence-source">
|
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 48</span>
|
|
536
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">recurrence</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
537
|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">recurrence_func</span> = <span class="ruby-identifier">block</span>
|
|
538
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
+
</div>
|
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|
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|
|
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|
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</div>
|
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|
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|
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|
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|
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</div>
|
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|
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|
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|
|
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|
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<div id="method-i-report" class="method-detail ">
|
|
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|
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|
|
551
|
+
<div class="method-heading">
|
|
552
|
+
<span class="method-name">report</span><span
|
|
553
|
+
class="method-args">(&block)</span>
|
|
554
|
+
|
|
555
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
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|
+
|
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|
+
</div>
|
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|
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|
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|
+
|
|
560
|
+
<div class="method-description">
|
|
561
|
+
|
|
562
|
+
<p>Report on evaluations</p>
|
|
563
|
+
|
|
564
|
+
|
|
565
|
+
|
|
566
|
+
|
|
567
|
+
<div class="method-source-code" id="report-source">
|
|
568
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 103</span>
|
|
569
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">report</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
570
|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">report_hook</span> = <span class="ruby-identifier">block</span>
|
|
571
|
+
<span class="ruby-keyword">end</span></pre>
|
|
572
|
+
</div>
|
|
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|
+
|
|
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|
+
</div>
|
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|
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|
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|
+
|
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|
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|
|
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|
|
579
|
+
</div>
|
|
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|
+
|
|
581
|
+
|
|
582
|
+
<div id="method-i-run_engine" class="method-detail ">
|
|
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|
+
|
|
584
|
+
<div class="method-heading">
|
|
585
|
+
<span class="method-name">run_engine</span><span
|
|
586
|
+
class="method-args">(&block)</span>
|
|
587
|
+
|
|
588
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
589
|
+
|
|
590
|
+
</div>
|
|
591
|
+
|
|
592
|
+
|
|
593
|
+
<div class="method-description">
|
|
594
|
+
|
|
595
|
+
<p>Run the engine. The block is called on each generation.</p>
|
|
596
|
+
|
|
597
|
+
|
|
598
|
+
|
|
599
|
+
|
|
600
|
+
<div class="method-source-code" id="run_engine-source">
|
|
601
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 108</span>
|
|
602
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">run_engine</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
603
|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">end_run_func</span> = <span class="ruby-identifier">block</span>
|
|
604
|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">run</span>
|
|
605
|
+
<span class="ruby-keyword">end</span></pre>
|
|
606
|
+
</div>
|
|
607
|
+
|
|
608
|
+
</div>
|
|
609
|
+
|
|
610
|
+
|
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|
+
|
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|
+
|
|
613
|
+
</div>
|
|
614
|
+
|
|
615
|
+
|
|
616
|
+
<div id="method-i-simple_fitness_error" class="method-detail ">
|
|
617
|
+
|
|
618
|
+
<div class="method-heading">
|
|
619
|
+
<span class="method-name">simple_fitness_error</span><span
|
|
620
|
+
class="method-args">(v1, v2)</span>
|
|
621
|
+
|
|
622
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
623
|
+
|
|
624
|
+
</div>
|
|
625
|
+
|
|
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|
+
|
|
627
|
+
<div class="method-description">
|
|
628
|
+
|
|
629
|
+
<p>Helper function to do a simple fitness calculation on the basis of the sum
|
|
630
|
+
of the square of the diffences of the element in the two vectors.</p>
|
|
631
|
+
|
|
632
|
+
|
|
633
|
+
|
|
634
|
+
|
|
635
|
+
<div class="method-source-code" id="simple_fitness_error-source">
|
|
636
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 95</span>
|
|
637
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">simple_fitness_error</span>(<span class="ruby-identifier">v1</span>, <span class="ruby-identifier">v2</span>)
|
|
638
|
+
<span class="ruby-identifier">sqrt</span> <span class="ruby-identifier">v1</span>.<span class="ruby-identifier">zip</span>(<span class="ruby-identifier">v2</span>).<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">a</span>, <span class="ruby-identifier">b</span><span class="ruby-operator">|</span> (<span class="ruby-identifier">a</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">b</span>) <span class="ruby-operator">**</span> <span class="ruby-value">2.0</span>}.<span class="ruby-identifier">reduce</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">m</span>, <span class="ruby-identifier">c</span><span class="ruby-operator">|</span> <span class="ruby-identifier">m</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c</span>}
|
|
639
|
+
<span class="ruby-keyword">end</span></pre>
|
|
640
|
+
</div>
|
|
641
|
+
|
|
642
|
+
</div>
|
|
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|
|
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|
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|
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|
|
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|
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|
|
647
|
+
</div>
|
|
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|
+
|
|
649
|
+
|
|
650
|
+
<div id="method-i-stop_on_fitness" class="method-detail ">
|
|
651
|
+
|
|
652
|
+
<div class="method-heading">
|
|
653
|
+
<span class="method-name">stop_on_fitness</span><span
|
|
654
|
+
class="method-args">(&block)</span>
|
|
655
|
+
|
|
656
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
657
|
+
|
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658
|
+
</div>
|
|
659
|
+
|
|
660
|
+
|
|
661
|
+
<div class="method-description">
|
|
662
|
+
|
|
663
|
+
<p>Stop the progression once the fitness criteria is reached for the most fit
|
|
664
|
+
critter</p>
|
|
665
|
+
|
|
666
|
+
|
|
667
|
+
|
|
668
|
+
|
|
669
|
+
<div class="method-source-code" id="stop_on_fitness-source">
|
|
670
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 75</span>
|
|
671
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">stop_on_fitness</span>(<span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
|
|
672
|
+
<span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-identifier">controller</span>.<span class="ruby-identifier">stop_on_fit_func</span> = <span class="ruby-identifier">block</span>
|
|
673
|
+
<span class="ruby-keyword">end</span></pre>
|
|
674
|
+
</div>
|
|
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|
+
|
|
676
|
+
</div>
|
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|
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|
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|
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|
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680
|
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|
|
681
|
+
</div>
|
|
682
|
+
|
|
683
|
+
|
|
684
|
+
<div id="method-i-uncondition_boolean_vector" class="method-detail ">
|
|
685
|
+
|
|
686
|
+
<div class="method-heading">
|
|
687
|
+
<span class="method-name">uncondition_boolean_vector</span><span
|
|
688
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class="method-args">(vec, sig = :tanh)</span>
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<p>Helper function to Uncondition boolean vectors to be +1 if true, -1 if
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false FIXME we need a better discrimination function</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/dsl.rb, line 88</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">uncondition_boolean_vector</span>(<span class="ruby-identifier">vec</span>, <span class="ruby-identifier">sig</span> = <span class="ruby-value">:tanh</span>)
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<span class="ruby-identifier">vec</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">o</span><span class="ruby-operator">|</span> <span class="ruby-identifier">o</span> <span class="ruby-operator">></span> ((<span class="ruby-identifier">sig</span> <span class="ruby-operator">==</span> <span class="ruby-value">:sigmoid</span>) <span class="ruby-operator">?</span> <span class="ruby-value">0.5</span> <span class="ruby-operator">:</span> <span class="ruby-value">0</span>) <span class="ruby-operator">?</span> <span class="ruby-keyword">true</span> <span class="ruby-operator">:</span> <span class="ruby-keyword">false</span>}
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<span class="ruby-keyword">end</span></pre>
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<footer id="validator-badges" role="contentinfo">
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<p><a href="http://validator.w3.org/check/referer">Validate</a>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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