rubyneat 0.3.5.alpha.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.directory +4 -0
- data/.gitignore.orig +20 -0
- data/.idea/.name +1 -0
- data/.idea/.rakeTasks +7 -0
- data/.idea/dictionaries/trader.xml +3 -0
- data/.idea/encodings.xml +5 -0
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- data/.idea/modules.xml +9 -0
- data/.idea/rubyneat.iml +197 -0
- data/.idea/runConfigurations/invpend_neat.xml +26 -0
- data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
- data/.idea/runConfigurations/xor_neat.xml +26 -0
- data/.idea/runConfigurations/xordebug_neat.xml +24 -0
- data/.idea/runConfigurations/xorsin_neat.xml +24 -0
- data/.idea/scopes/scope_settings.xml +5 -0
- data/.idea/vcs.xml +7 -0
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- data/.semver +5 -0
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- data/bin/neat +83 -0
- data/config/application.rb +5 -0
- data/doc/ControllerPoint.html +125 -0
- data/doc/CuteA.html +286 -0
- data/doc/CuteB.html +297 -0
- data/doc/DSL.html +883 -0
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes.html +136 -0
- data/doc/NEAT/Controller/NeatSettings.html +3985 -0
- data/doc/NEAT/Controller.html +2490 -0
- data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
- data/doc/NEAT/Critter/Genotype.html +1601 -0
- data/doc/NEAT/Critter/Phenotype.html +603 -0
- data/doc/NEAT/Critter.html +1037 -0
- data/doc/NEAT/DSL.html +1255 -0
- data/doc/NEAT/Evaluator.html +420 -0
- data/doc/NEAT/Evolver/CritterOp.html +551 -0
- data/doc/NEAT/Evolver.html +602 -0
- data/doc/NEAT/Expressor.html +327 -0
- data/doc/NEAT/Graph/DependencyResolver.html +478 -0
- data/doc/NEAT/Graph/GraphException.html +123 -0
- data/doc/NEAT/Graph.html +402 -0
- data/doc/NEAT/NeatException.html +123 -0
- data/doc/NEAT/NeatOb.html +567 -0
- data/doc/NEAT/Neuron.html +1067 -0
- data/doc/NEAT/Operator.html +162 -0
- data/doc/NEAT/Population.html +1961 -0
- data/doc/NEAT/Trait.html +169 -0
- data/doc/NEAT.html +588 -0
- data/doc/_index.html +373 -0
- data/doc/class_list.html +54 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +57 -0
- data/doc/css/style.css +339 -0
- data/doc/file_list.html +53 -0
- data/doc/frames.html +26 -0
- data/doc/index.html +373 -0
- data/doc/js/app.js +219 -0
- data/doc/js/full_list.js +178 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1415 -0
- data/doc/top-level-namespace.html +164 -0
- data/foo/foo_aquarium_example.rb +38 -0
- data/foo/foo_gosu.rb +99 -0
- data/foo/foo_rubygoo.rb +104 -0
- data/foo/foo_sdl.rb +34 -0
- data/foo/icon.png +0 -0
- data/lib/rubyneat/critter.rb +374 -0
- data/lib/rubyneat/default_neat.rb +10 -0
- data/lib/rubyneat/dsl.rb +130 -0
- data/lib/rubyneat/evaluator.rb +51 -0
- data/lib/rubyneat/evolver.rb +315 -0
- data/lib/rubyneat/expressor.rb +110 -0
- data/lib/rubyneat/graph.rb +95 -0
- data/lib/rubyneat/neuron.rb +152 -0
- data/lib/rubyneat/population.rb +227 -0
- data/lib/rubyneat/rubyneat.rb +429 -0
- data/lib/rubyneat.rb +8 -0
- data/neater/invpend_neat.rb +150 -0
- data/neater/rnlib/inverted_pendulum.rb +380 -0
- data/neater/rnlib/xor.rb +10 -0
- data/neater/sigdebug_neat.rb +136 -0
- data/neater/xor_neat.rb +137 -0
- data/neater/xoranalog_neat.rb +138 -0
- data/neater/xorsin_neat.rb +143 -0
- data/projectFilesBackup/.idea/rubyneat.iml +180 -0
- data/public/.directory +4 -0
- data/public/background.png +0 -0
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- data/public/wheel.png +0 -0
- data/public/wheel.xcf +0 -0
- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +116 -0
- data/rdoc/CuteA.html +177 -0
- data/rdoc/CuteB.html +178 -0
- data/rdoc/DSLSetup.html +177 -0
- data/rdoc/GameTestWindow.html +242 -0
- data/rdoc/GameWindow.html +292 -0
- data/rdoc/Gemfile.html +215 -0
- data/rdoc/Gemfile_lock.html +327 -0
- data/rdoc/GraphTest.html +210 -0
- data/rdoc/Guardfile.html +198 -0
- data/rdoc/InvertedPendulum/Cart.html +668 -0
- data/rdoc/InvertedPendulum/DSL.html +259 -0
- data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
- data/rdoc/InvertedPendulum.html +198 -0
- data/rdoc/Logger.html +98 -0
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
- data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
- data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
- data/rdoc/NEAT/Controller.html +729 -0
- data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
- data/rdoc/NEAT/Critter/Genotype.html +735 -0
- data/rdoc/NEAT/Critter/Phenotype.html +330 -0
- data/rdoc/NEAT/Critter.html +489 -0
- data/rdoc/NEAT/DSL.html +729 -0
- data/rdoc/NEAT/Evaluator.html +256 -0
- data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
- data/rdoc/NEAT/Evolver.html +891 -0
- data/rdoc/NEAT/Expressor.html +402 -0
- data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
- data/rdoc/NEAT/Graph/GraphException.html +105 -0
- data/rdoc/NEAT/Graph.html +263 -0
- data/rdoc/NEAT/NeatException.html +105 -0
- data/rdoc/NEAT/NeatOb.html +325 -0
- data/rdoc/NEAT/Neuron.html +481 -0
- data/rdoc/NEAT/Operator.html +109 -0
- data/rdoc/NEAT/Population.html +935 -0
- data/rdoc/NEAT/Trait.html +117 -0
- data/rdoc/NEAT.html +422 -0
- data/rdoc/Object.html +384 -0
- data/rdoc/Phi.html +98 -0
- data/rdoc/Player.html +383 -0
- data/rdoc/Rakefile.html +254 -0
- data/rdoc/RubyNEAT/Application.html +105 -0
- data/rdoc/RubyNEAT.html +98 -0
- data/rdoc/SDL/Event2.html +98 -0
- data/rdoc/SDL.html +98 -0
- data/rdoc/Vector.html +195 -0
- data/rdoc/created.rid +125 -0
- data/rdoc/doc/ControllerPoint_html.html +299 -0
- data/rdoc/doc/CuteA_html.html +438 -0
- data/rdoc/doc/CuteB_html.html +436 -0
- data/rdoc/doc/DSL_html.html +992 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
- data/rdoc/doc/NEAT/Controller_html.html +2212 -0
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
- data/rdoc/doc/NEAT/Critter_html.html +1037 -0
- data/rdoc/doc/NEAT/DSL_html.html +1349 -0
- data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
- data/rdoc/doc/NEAT/Evolver_html.html +677 -0
- data/rdoc/doc/NEAT/Expressor_html.html +468 -0
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
- data/rdoc/doc/NEAT/Graph_html.html +527 -0
- data/rdoc/doc/NEAT/NeatException_html.html +299 -0
- data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
- data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
- data/rdoc/doc/NEAT/Operator_html.html +337 -0
- data/rdoc/doc/NEAT/Population_html.html +1795 -0
- data/rdoc/doc/NEAT/Trait_html.html +344 -0
- data/rdoc/doc/NEAT_html.html +736 -0
- data/rdoc/doc/_index_html.html +559 -0
- data/rdoc/doc/class_list_html.html +369 -0
- data/rdoc/doc/css/common_css.html +188 -0
- data/rdoc/doc/css/full_list_css.html +243 -0
- data/rdoc/doc/css/style_css.html +530 -0
- data/rdoc/doc/file_list_html.html +240 -0
- data/rdoc/doc/frames_html.html +217 -0
- data/rdoc/doc/index_html.html +559 -0
- data/rdoc/doc/js/app_js.html +423 -0
- data/rdoc/doc/js/full_list_js.html +372 -0
- data/rdoc/doc/js/jquery_js.html +1536 -0
- data/rdoc/doc/method_list_html.html +1375 -0
- data/rdoc/doc/top-level-namespace_html.html +317 -0
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/fonts.css +167 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
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- data/rdoc/images/delete.png +0 -0
- data/rdoc/images/find.png +0 -0
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- data/rdoc/images/macFFBgHack.png +0 -0
- data/rdoc/images/package.png +0 -0
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- data/rdoc/images/ruby.png +0 -0
- data/rdoc/images/tag_blue.png +0 -0
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- data/rdoc/images/transparent.png +0 -0
- data/rdoc/images/wrench.png +0 -0
- data/rdoc/images/wrench_orange.png +0 -0
- data/rdoc/images/zoom.png +0 -0
- data/rdoc/index.html +282 -0
- data/rdoc/js/darkfish.js +140 -0
- data/rdoc/js/jquery.js +18 -0
- data/rdoc/js/navigation.js +142 -0
- data/rdoc/js/search.js +109 -0
- data/rdoc/js/search_index.js +1 -0
- data/rdoc/js/searcher.js +228 -0
- data/rdoc/rdoc.css +580 -0
- data/rdoc/rubyneat_gemspec.html +387 -0
- data/rdoc/table_of_contents.html +2502 -0
- data/rdoc/xordebug_log.html +170598 -0
- data/rdoc/xorsin_log.html +22569 -0
- data/rubyneat.gemspec +347 -0
- data/rubyneat.gemspec.orig +375 -0
- data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
- metadata +555 -0
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<h1 id="class-NEAT::Critter-label-Critters+for+NEAT">Critters for <a href="../NEAT.html">NEAT</a><span><a href="#class-NEAT::Critter-label-Critters+for+NEAT">¶</a> <a href="#documentation">↑</a></span></h1>
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<pre class="ruby"><span class="ruby-constant">The</span> <span class="ruby-constant">Critter</span> <span class="ruby-keyword">class</span> <span class="ruby-identifier">comprises</span> <span class="ruby-identifier">a</span> <span class="ruby-constant">Genotype</span> <span class="ruby-keyword">and</span> <span class="ruby-identifier">a</span> <span class="ruby-constant">Phenotype</span>.
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<span class="ruby-constant">The</span> <span class="ruby-constant">Genotype</span> <span class="ruby-identifier">comprises</span> <span class="ruby-constant">Genes</span> <span class="ruby-keyword">and</span> <span class="ruby-constant">Neurons</span>.
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<p><a href="Critter.html">Critter</a> construction. We construct the genotype.
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The phenotype will be constructed by the <a
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 20</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">pop</span>, <span class="ruby-identifier">mating</span> = <span class="ruby-keyword">false</span>, <span class="ruby-operator">&</span><span class="ruby-identifier">block</span>)
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<p>Compare ourselves against another critter for compability.</p>
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<p>The function to be used here is:</p>
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|
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<pre>distance = c1*E + c2*D + c3*W</pre>
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|
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<p>Where:</p>
|
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<pre>E, D - The number of excess and disjoint genes repesctively.
|
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N - The number of genes in the largest genome.
|
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W - The sum of absolute weight differences.</pre>
|
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|
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<p>This is a variation of the formulation suggested by the Stanley paper,
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which normalizes the E and D terms by N.</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 333</span>
|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">compare</span>(<span class="ruby-identifier">oc</span>)
|
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<span class="ruby-identifier">c1</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">excess_coefficient</span>
|
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<span class="ruby-identifier">c2</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">disjoint_coefficient</span>
|
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<span class="ruby-identifier">c3</span> = <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">parms</span>.<span class="ruby-identifier">weight_coefficient</span>
|
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<span class="ruby-identifier">e</span> = <span class="ruby-identifier">excess</span>(<span class="ruby-identifier">oc</span>)
|
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<span class="ruby-identifier">d</span> = <span class="ruby-identifier">disjoint</span>(<span class="ruby-identifier">oc</span>)
|
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<span class="ruby-identifier">w</span> = <span class="ruby-identifier">weight_diff</span>(<span class="ruby-identifier">oc</span>)
|
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<span class="ruby-keyword">return</span> <span class="ruby-identifier">c1</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">e</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c2</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">d</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">c3</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">w</span>
|
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<span class="ruby-keyword">end</span></pre>
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<p><a href="Critter.html">Critter</a> print</p>
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 344</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">dump_s</span>
|
|
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|
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<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@genotype</span>.<span class="ruby-identifier">dump_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">"\n"</span> <span class="ruby-operator">+</span> <span class="ruby-ivar">@phenotype</span>.<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-string">"\n"</span>
|
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|
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<span class="ruby-keyword">end</span></pre>
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</div>
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<div id="method-i-evaluate-21" class="method-detail ">
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<div class="method-heading">
|
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<span class="method-name">evaluate!</span><span
|
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class="method-args">()</span>
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|
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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<p>A single evaluation step. Evaluate and generate fitness, novelty, etc.
|
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Returns the result.</p>
|
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<div class="method-source-code" id="evaluate-21-source">
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 50</span>
|
|
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|
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">evaluate!</span>
|
|
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|
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<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">evaluator</span>.<span class="ruby-identifier">evaluate!</span> <span class="ruby-keyword">self</span>
|
|
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|
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<span class="ruby-keyword">end</span></pre>
|
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</div>
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</div>
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<div id="method-i-express-21" class="method-detail ">
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|
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<div class="method-heading">
|
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<span class="method-name">express!</span><span
|
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class="method-args">()</span>
|
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|
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<span class="method-click-advice">click to toggle source</span>
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</div>
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|
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<div class="method-description">
|
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|
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|
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|
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<p>Exoress this critter using the <a href="Expressor.html">Expressor</a>
|
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|
+
plugin.</p>
|
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+
|
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|
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|
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|
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|
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<div class="method-source-code" id="express-21-source">
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 36</span>
|
|
394
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express!</span>
|
|
395
|
+
<span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">expressor</span>.<span class="ruby-identifier">express!</span> <span class="ruby-keyword">self</span>
|
|
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|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
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</div>
|
|
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|
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|
|
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|
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</div>
|
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|
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|
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|
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|
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|
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|
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|
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|
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</div>
|
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405
|
+
|
|
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|
+
|
|
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|
+
<div id="method-i-initialize_neurons-21" class="method-detail ">
|
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|
+
|
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|
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<div class="method-heading">
|
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|
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<span class="method-name">initialize_neurons!</span><span
|
|
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|
+
class="method-args">()</span>
|
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|
+
|
|
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|
+
<span class="method-click-advice">click to toggle source</span>
|
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|
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|
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</div>
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|
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|
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|
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|
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<div class="method-description">
|
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|
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|
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<p>This initializes neurons in preparation for recurrence. Note that the <a
|
|
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|
+
href="Critter.html">Critter</a> should already have expressed its genotype
|
|
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|
+
before this is called.</p>
|
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|
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|
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|
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|
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|
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|
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<div class="method-source-code" id="initialize_neurons-21-source">
|
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|
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<pre><span class="ruby-comment"># File lib/rubyneat/critter.rb, line 43</span>
|
|
429
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize_neurons!</span>
|
|
430
|
+
<span class="ruby-ivar">@phenotype</span>.<span class="ruby-identifier">initialize_neurons</span>
|
|
431
|
+
<span class="ruby-keyword">end</span></pre>
|
|
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|
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</div>
|
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|
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|
|
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|
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</div>
|
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|
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|
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|
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|
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|
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|
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|
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</div>
|
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|
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|
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|
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|
|
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|
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<div id="method-i-ready_for_expression-21" class="method-detail ">
|
|
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|
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|
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|
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<div class="method-heading">
|
|
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|
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<span class="method-name">ready_for_expression!</span><span
|
|
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|
+
class="method-args">()</span>
|
|
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|
+
|
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<p>Get the <a href="Critter.html">Critter</a> ready for the <a
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">ready_for_expression!</span>
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<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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