rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
  22. data/.yardoc/objects/root.dat +0 -0
  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
  55. data/doc/NEAT/Graph.html +402 -0
  56. data/doc/NEAT/NeatException.html +123 -0
  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
  80. data/foo/icon.png +0 -0
  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
  101. data/public/background.png +0 -0
  102. data/public/background.xcf +0 -0
  103. data/public/cart.png +0 -0
  104. data/public/cart.xcf +0 -0
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  106. data/public/old_background.png +0 -0
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  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
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  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
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  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
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  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
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  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
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  148. data/rdoc/NEAT/Expressor.html +402 -0
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  151. data/rdoc/NEAT/Graph.html +263 -0
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  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
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  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
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  171. data/rdoc/doc/CuteB_html.html +436 -0
  172. data/rdoc/doc/DSL_html.html +992 -0
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  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
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  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
  183. data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
  184. data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
  185. data/rdoc/doc/NEAT/Critter_html.html +1037 -0
  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
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  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
  193. data/rdoc/doc/NEAT/Graph_html.html +527 -0
  194. data/rdoc/doc/NEAT/NeatException_html.html +299 -0
  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
  200. data/rdoc/doc/NEAT_html.html +736 -0
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  202. data/rdoc/doc/class_list_html.html +369 -0
  203. data/rdoc/doc/css/common_css.html +188 -0
  204. data/rdoc/doc/css/full_list_css.html +243 -0
  205. data/rdoc/doc/css/style_css.html +530 -0
  206. data/rdoc/doc/file_list_html.html +240 -0
  207. data/rdoc/doc/frames_html.html +217 -0
  208. data/rdoc/doc/index_html.html +559 -0
  209. data/rdoc/doc/js/app_js.html +423 -0
  210. data/rdoc/doc/js/full_list_js.html +372 -0
  211. data/rdoc/doc/js/jquery_js.html +1536 -0
  212. data/rdoc/doc/method_list_html.html +1375 -0
  213. data/rdoc/doc/top-level-namespace_html.html +317 -0
  214. data/rdoc/fonts/Lato-Light.ttf +0 -0
  215. data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
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  217. data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
  218. data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
  219. data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
  220. data/rdoc/fonts.css +167 -0
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  245. data/rdoc/images/zoom.png +0 -0
  246. data/rdoc/index.html +282 -0
  247. data/rdoc/js/darkfish.js +140 -0
  248. data/rdoc/js/jquery.js +18 -0
  249. data/rdoc/js/navigation.js +142 -0
  250. data/rdoc/js/search.js +109 -0
  251. data/rdoc/js/search_index.js +1 -0
  252. data/rdoc/js/searcher.js +228 -0
  253. data/rdoc/rdoc.css +580 -0
  254. data/rdoc/rubyneat_gemspec.html +387 -0
  255. data/rdoc/table_of_contents.html +2502 -0
  256. data/rdoc/xordebug_log.html +170598 -0
  257. data/rdoc/xorsin_log.html +22569 -0
  258. data/rubyneat.gemspec +347 -0
  259. data/rubyneat.gemspec.orig +375 -0
  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>NeatSettings.html - rubyneat 0.3.4</title>
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+
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+ <link href="../../../fonts.css" rel="stylesheet">
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+ <link href="../../../rdoc.css" rel="stylesheet">
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+
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../../";
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+ </script>
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+ <script src="../../../js/jquery.js"></script>
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+ <script src="../../../js/navigation.js"></script>
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+ <script src="../../../js/search_index.js"></script>
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+ <script src="../../../js/search.js"></script>
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+ <script src="../../../js/searcher.js"></script>
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+ <script src="../../../js/darkfish.js"></script>
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+ <body id="top" role="document" class="file">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../../index.html" rel="home">Home</a>
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+ </h2>
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+ <div id="table-of-contents-navigation">
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+ <a href="../../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ <div id="project-metadata">
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+ <div id="fileindex-section" class="nav-section">
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+ <h3>Pages</h3>
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+ <ul class="link-list">
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+ <li><a href="../../../Gemfile.html">Gemfile</a>
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+ <li><a href="../../../Gemfile_lock.html">Gemfile.lock</a>
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+ <li><a href="../../../Guardfile.html">Guardfile</a>
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+ <li><a href="../../../Rakefile.html">Rakefile</a>
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+ <li><a href="../../../doc/ControllerPoint_html.html">ControllerPoint.html</a>
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+ <li><a href="../../../doc/CuteA_html.html">CuteA.html</a>
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+ <li><a href="../../../doc/CuteB_html.html">CuteB.html</a>
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+ <li><a href="../../../doc/DSL_html.html">DSL.html</a>
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+ <li><a href="../../../doc/NEAT_html.html">NEAT.html</a>
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+ <li><a href="../../../doc/NEAT/BasicNeuronTypes_html.html">BasicNeuronTypes.html</a>
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+ <li><a href="../../../doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html">BiasNeuron.html</a>
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+ <li><a href="../../../doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html">CosineNeuron.html</a>
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+ <li><a href="../../../doc/NEAT/BasicNeuronTypes/InputNeuron_html.html">InputNeuron.html</a>
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+ <li><a href="../../../doc/NEAT/Graph_html.html">Graph.html</a>
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+ <li><a href="../../../doc/NEAT/Graph/GraphException_html.html">GraphException.html</a>
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+ <li><a href="../../../doc/NEAT/NeatException_html.html">NeatException.html</a>
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+ <li><a href="../../../doc/NEAT/NeatOb_html.html">NeatOb.html</a>
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+ <li><a href="../../../doc/NEAT/Population_html.html">Population.html</a>
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+ <li><a href="../../../doc/class_list_html.html">class_list.html</a>
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+ <li><a href="../../../doc/css/common_css.html">common.css</a>
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+ <li><a href="../../../doc/css/full_list_css.html">full_list.css</a>
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+ <li><a href="../../../doc/css/style_css.html">style.css</a>
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+ <li><a href="../../../doc/js/full_list_js.html">full_list.js</a>
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+
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+ <li><a href="../../../doc/js/jquery_js.html">jquery.js</a>
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+
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+ <li><a href="../../../doc/method_list_html.html">method_list.html</a>
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+
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+ <li><a href="../../../doc/top-level-namespace_html.html">top-level-namespace.html</a>
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+
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+ <li><a href="../../../foo_dump_log.html">foo.dump.log</a>
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+
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+ <li><a href="../../../rubyneat_gemspec.html">rubyneat.gemspec</a>
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+
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+ <li><a href="../../../xordebug_log.html">xordebug.log</a>
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+
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+ <li><a href="../../../xorsin_log.html">xorsin.log</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-label="Page doc/NEAT/Controller/NeatSettings.html">
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+
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+ <p>&lt;!DOCTYPE html PUBLIC “-//W3C//DTD XHTML 1.0 Transitional//EN”</p>
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+
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+ <pre>&quot;http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd&quot;&gt;</pre>
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+
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+ <p>&lt;html xmlns=“<a
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+ href="http://www.w3.org/1999/xhtml">www.w3.org/1999/xhtml</a>”
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+ xml:lang=“en” lang=“en”&gt;</p>
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+
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+ <pre>&lt;head&gt;
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+ &lt;meta http-equiv=&quot;Content-Type&quot; content=&quot;text/html; charset=utf-8&quot; /&gt;</pre>
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+
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+ <p>&lt;title&gt;</p>
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+
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+ <pre>Class: NEAT::Controller::NeatSettings
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+
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+ &amp;mdash; Documentation by YARD 0.8.7.3</pre>
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+
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+ <p>&lt;/title&gt;</p>
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+
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+ <pre>&lt;link rel=&quot;stylesheet&quot; href=&quot;../../css/style.css&quot; type=&quot;text/css&quot; charset=&quot;utf-8&quot; /&gt;
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+
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+ &lt;link rel=&quot;stylesheet&quot; href=&quot;../../css/common.css&quot; type=&quot;text/css&quot; charset=&quot;utf-8&quot; /&gt;</pre>
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+
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+ <p>&lt;script type=“text/javascript” charset=“utf-8”&gt;</p>
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+
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+ <pre>hasFrames = window.top.frames.main ? true : false;
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+ relpath = &#39;../../&#39;;
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+ framesUrl = &quot;../../frames.html#!&quot; + escape(window.location.href);</pre>
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+
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+ <p>&lt;/script&gt;</p>
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+
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+ <pre>&lt;script type=&quot;text/javascript&quot; charset=&quot;utf-8&quot; src=&quot;../../js/jquery.js&quot;&gt;&lt;/script&gt;
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+
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+ &lt;script type=&quot;text/javascript&quot; charset=&quot;utf-8&quot; src=&quot;../../js/app.js&quot;&gt;&lt;/script&gt;
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+
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+ &lt;/head&gt;
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+ &lt;body&gt;
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+ &lt;div id=&quot;header&quot;&gt;
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+ &lt;div id=&quot;menu&quot;&gt;
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+
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+ &lt;a href=&quot;../../_index.html&quot;&gt;Index (N)&lt;/a&gt; &amp;raquo;
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+ &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../../NEAT.html&quot; title=&quot;NEAT (module)&quot;&gt;NEAT&lt;/a&gt;&lt;/span&gt;&lt;/span&gt; &amp;raquo; &lt;span class=&#39;title&#39;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../Controller.html&quot; title=&quot;NEAT::Controller (class)&quot;&gt;Controller&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+ &amp;raquo;
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+ &lt;span class=&quot;title&quot;&gt;NeatSettings&lt;/span&gt;
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+
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+ &lt;div class=&quot;noframes&quot;&gt;&lt;span class=&quot;title&quot;&gt;(&lt;/span&gt;&lt;a href=&quot;.&quot; target=&quot;_top&quot;&gt;no frames&lt;/a&gt;&lt;span class=&quot;title&quot;&gt;)&lt;/span&gt;&lt;/div&gt;</pre>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre> &lt;div id=&quot;search&quot;&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;class_list_link&quot;
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+ href=&quot;../../class_list.html&quot;&gt;
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+ Class List
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+ &lt;/a&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;method_list_link&quot;
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+ href=&quot;../../method_list.html&quot;&gt;
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+ Method List
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+ &lt;/a&gt;
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+
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+ &lt;a class=&quot;full_list_link&quot; id=&quot;file_list_link&quot;
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+ href=&quot;../../file_list.html&quot;&gt;
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+ File List
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+ &lt;/a&gt;</pre>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre> &lt;div class=&quot;clear&quot;&gt;&lt;/div&gt;
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+ &lt;/div&gt;
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+
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+ &lt;iframe id=&quot;search_frame&quot;&gt;&lt;/iframe&gt;
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+
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+ &lt;div id=&quot;content&quot;&gt;&lt;h1&gt;Class: NEAT::Controller::NeatSettings</pre>
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+
253
+ <p>&lt;/h1&gt;</p>
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+
255
+ <p>&lt;dl class=“box”&gt;</p>
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+
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+ <pre>&lt;dt class=&quot;r1&quot;&gt;Inherits:&lt;/dt&gt;
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+ &lt;dd class=&quot;r1&quot;&gt;
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+ &lt;span class=&quot;inheritName&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;
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+
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+ &lt;ul class=&quot;fullTree&quot;&gt;
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+ &lt;li&gt;Object&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/li&gt;
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+
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+ &lt;li class=&quot;next&quot;&gt;NEAT::Controller::NeatSettings&lt;/li&gt;
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+
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+ &lt;/ul&gt;
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+ &lt;a href=&quot;#&quot; class=&quot;inheritanceTree&quot;&gt;show all&lt;/a&gt;
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+
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+ &lt;/dd&gt;
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+
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+ &lt;dt class=&quot;r2 last&quot;&gt;Defined in:&lt;/dt&gt;
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+ &lt;dd class=&quot;r2 last&quot;&gt;lib/rubyneat/rubyneat.rb&lt;/dd&gt;</pre>
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+
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+ <p>&lt;/dl&gt; &lt;div class=“clear”&gt;&lt;/div&gt;</p>
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+
278
+ <p>&lt;h2&gt;Overview&lt;/h2&gt;&lt;div class=“docstring”&gt;</p>
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+
280
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
281
+
282
+ <p>&lt;p&gt;Various parameters affecting evolution. Based somewhat on the C
283
+ version of <a href="../../../NEAT.html">NEAT</a>. TODO not all of these
284
+ parameters are implemented yet!!!&lt;/p&gt;</p>
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+
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+ <pre>&lt;/div&gt;</pre>
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+
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+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
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+
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+ <p>&lt;/div&gt;</p>
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+
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+ <pre>&lt;h2&gt;Instance Attribute Summary &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;&lt;/h2&gt;
293
+ &lt;ul class=&quot;summary&quot;&gt;
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+
295
+ &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
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+
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+ &lt;a href=&quot;#age_significance-instance_method&quot; title=&quot;#age_significance (instance method)&quot;&gt;- (Object) &lt;strong&gt;age_significance&lt;/strong&gt; &lt;/a&gt;
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+
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+ &lt;/span&gt;
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+
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+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
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+
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+ <p>&lt;p&gt;based on the C version of <a
305
+ href="../../../NEAT.html">NEAT</a>.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
306
+
307
+ <p>&lt;/li&gt;</p>
308
+
309
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
311
+
312
+ &lt;a href=&quot;#babies_stolen-instance_method&quot; title=&quot;#babies_stolen (instance method)&quot;&gt;- (Object) &lt;strong&gt;babies_stolen&lt;/strong&gt; &lt;/a&gt;
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+
314
+ &lt;/span&gt;
315
+
316
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
317
+
318
+ <p>&lt;p&gt;Returns the value of attribute babies_stolen.&lt;/p&gt;
319
+ &lt;/div&gt;&lt;/span&gt;</p>
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+
321
+ <p>&lt;/li&gt;</p>
322
+
323
+ <pre> &lt;li class=&quot;public &quot;&gt;
324
+ &lt;span class=&quot;summary_signature&quot;&gt;
325
+
326
+ &lt;a href=&quot;#compatibility_threshold-instance_method&quot; title=&quot;#compatibility_threshold (instance method)&quot;&gt;- (Object) &lt;strong&gt;compatibility_threshold&lt;/strong&gt; &lt;/a&gt;
327
+
328
+ &lt;/span&gt;
329
+
330
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
331
+
332
+ <p>&lt;p&gt;Species compatability threshold.&lt;/p&gt;
333
+ &lt;/div&gt;&lt;/span&gt;</p>
334
+
335
+ <p>&lt;/li&gt;</p>
336
+
337
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
339
+
340
+ &lt;a href=&quot;#disjoint_coefficient-instance_method&quot; title=&quot;#disjoint_coefficient (instance method)&quot;&gt;- (Object) &lt;strong&gt;disjoint_coefficient&lt;/strong&gt; &lt;/a&gt;
341
+
342
+ &lt;/span&gt;
343
+
344
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
345
+
346
+ <p>&lt;p&gt;Speciation coffficient.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
347
+
348
+ <p>&lt;/li&gt;</p>
349
+
350
+ <pre> &lt;li class=&quot;public &quot;&gt;
351
+ &lt;span class=&quot;summary_signature&quot;&gt;
352
+
353
+ &lt;a href=&quot;#dropoff_age-instance_method&quot; title=&quot;#dropoff_age (instance method)&quot;&gt;- (Object) &lt;strong&gt;dropoff_age&lt;/strong&gt; &lt;/a&gt;
354
+
355
+ &lt;/span&gt;
356
+
357
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
358
+
359
+ <p>&lt;p&gt;Species Peality age for not making progress.&lt;/p&gt;
360
+ &lt;/div&gt;&lt;/span&gt;</p>
361
+
362
+ <p>&lt;/li&gt;</p>
363
+
364
+ <pre> &lt;li class=&quot;public &quot;&gt;
365
+ &lt;span class=&quot;summary_signature&quot;&gt;
366
+
367
+ &lt;a href=&quot;#end_sequence_at-instance_method&quot; title=&quot;#end_sequence_at (instance method)&quot;&gt;- (Object) &lt;strong&gt;end_sequence_at&lt;/strong&gt; &lt;/a&gt;
368
+
369
+ &lt;/span&gt;
370
+
371
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
372
+
373
+ <p>&lt;p&gt;Returns the value of attribute end_sequence_at.&lt;/p&gt;
374
+ &lt;/div&gt;&lt;/span&gt;</p>
375
+
376
+ <p>&lt;/li&gt;</p>
377
+
378
+ <pre> &lt;li class=&quot;public &quot;&gt;
379
+ &lt;span class=&quot;summary_signature&quot;&gt;
380
+
381
+ &lt;a href=&quot;#evolved_substrate_switch-instance_method&quot; title=&quot;#evolved_substrate_switch (instance method)&quot;&gt;- (Object) &lt;strong&gt;evolved_substrate_switch&lt;/strong&gt; &lt;/a&gt;
382
+
383
+ &lt;/span&gt;
384
+
385
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
386
+
387
+ <p>&lt;p&gt;Enable Evolved Substrate HyperNEAT.&lt;/p&gt;
388
+ &lt;/div&gt;&lt;/span&gt;</p>
389
+
390
+ <p>&lt;/li&gt;</p>
391
+
392
+ <pre> &lt;li class=&quot;public &quot;&gt;
393
+ &lt;span class=&quot;summary_signature&quot;&gt;
394
+
395
+ &lt;a href=&quot;#excess_coefficient-instance_method&quot; title=&quot;#excess_coefficient (instance method)&quot;&gt;- (Object) &lt;strong&gt;excess_coefficient&lt;/strong&gt; &lt;/a&gt;
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+
397
+ &lt;/span&gt;
398
+
399
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
400
+
401
+ <p>&lt;p&gt;Speciation coffficient.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
402
+
403
+ <p>&lt;/li&gt;</p>
404
+
405
+ <pre> &lt;li class=&quot;public &quot;&gt;
406
+ &lt;span class=&quot;summary_signature&quot;&gt;
407
+
408
+ &lt;a href=&quot;#feature_selection_switch-instance_method&quot; title=&quot;#feature_selection_switch (instance method)&quot;&gt;- (Object) &lt;strong&gt;feature_selection_switch&lt;/strong&gt; &lt;/a&gt;
409
+
410
+ &lt;/span&gt;
411
+
412
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
413
+
414
+ <p>&lt;p&gt;Enable FS-NEAT.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
415
+
416
+ <p>&lt;/li&gt;</p>
417
+
418
+ <pre> &lt;li class=&quot;public &quot;&gt;
419
+ &lt;span class=&quot;summary_signature&quot;&gt;
420
+
421
+ &lt;a href=&quot;#fitness_cost_per_gene-instance_method&quot; title=&quot;#fitness_cost_per_gene (instance method)&quot;&gt;- (Object) &lt;strong&gt;fitness_cost_per_gene&lt;/strong&gt; &lt;/a&gt;
422
+
423
+ &lt;/span&gt;
424
+
425
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
426
+
427
+ <p>&lt;p&gt;Returns the value of attribute fitness_cost_per_gene.&lt;/p&gt;
428
+ &lt;/div&gt;&lt;/span&gt;</p>
429
+
430
+ <p>&lt;/li&gt;</p>
431
+
432
+ <pre> &lt;li class=&quot;public &quot;&gt;
433
+ &lt;span class=&quot;summary_signature&quot;&gt;
434
+
435
+ &lt;a href=&quot;#fitness_cost_per_neuron-instance_method&quot; title=&quot;#fitness_cost_per_neuron (instance method)&quot;&gt;- (Object) &lt;strong&gt;fitness_cost_per_neuron&lt;/strong&gt; &lt;/a&gt;
436
+
437
+ &lt;/span&gt;
438
+
439
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
440
+
441
+ <p>&lt;p&gt;fitness costs, if given, use in the computation of fitness AFTER
442
+ the overall fitness for the applied stimuli have been caclulated.&lt;/p&gt;
443
+ &lt;/div&gt;&lt;/span&gt;</p>
444
+
445
+ <p>&lt;/li&gt;</p>
446
+
447
+ <pre> &lt;li class=&quot;public &quot;&gt;
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+ &lt;span class=&quot;summary_signature&quot;&gt;
449
+
450
+ &lt;a href=&quot;#hash_on_fitness-instance_method&quot; title=&quot;#hash_on_fitness (instance method)&quot;&gt;- (Object) &lt;strong&gt;hash_on_fitness&lt;/strong&gt; &lt;/a&gt;
451
+
452
+ &lt;/span&gt;
453
+
454
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
455
+
456
+ <p>&lt;p&gt;Set to true to returned named parameters as hashes to the fitness
457
+ function (the default is to do ordered arrays).&lt;/p&gt;
458
+ &lt;/div&gt;&lt;/span&gt;</p>
459
+
460
+ <p>&lt;/li&gt;</p>
461
+
462
+ <pre> &lt;li class=&quot;public &quot;&gt;
463
+ &lt;span class=&quot;summary_signature&quot;&gt;
464
+
465
+ &lt;a href=&quot;#hyper_switch-instance_method&quot; title=&quot;#hyper_switch (instance method)&quot;&gt;- (Object) &lt;strong&gt;hyper_switch&lt;/strong&gt; &lt;/a&gt;
466
+
467
+ &lt;/span&gt;
468
+
469
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
470
+
471
+ <p>&lt;p&gt;Enable HyperNEAT.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
472
+
473
+ <p>&lt;/li&gt;</p>
474
+
475
+ <pre> &lt;li class=&quot;public &quot;&gt;
476
+ &lt;span class=&quot;summary_signature&quot;&gt;
477
+
478
+ &lt;a href=&quot;#interspecies_mate_rate-instance_method&quot; title=&quot;#interspecies_mate_rate (instance method)&quot;&gt;- (Object) &lt;strong&gt;interspecies_mate_rate&lt;/strong&gt; &lt;/a&gt;
479
+
480
+ &lt;/span&gt;
481
+
482
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
483
+
484
+ <p>&lt;p&gt;Ratio of mating are actually interspecies.&lt;/p&gt;
485
+ &lt;/div&gt;&lt;/span&gt;</p>
486
+
487
+ <p>&lt;/li&gt;</p>
488
+
489
+ <pre> &lt;li class=&quot;public &quot;&gt;
490
+ &lt;span class=&quot;summary_signature&quot;&gt;
491
+
492
+ &lt;a href=&quot;#linktrait_mutation_sig-instance_method&quot; title=&quot;#linktrait_mutation_sig (instance method)&quot;&gt;- (Object) &lt;strong&gt;linktrait_mutation_sig&lt;/strong&gt; &lt;/a&gt;
493
+
494
+ &lt;/span&gt;
495
+
496
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
497
+
498
+ <p>&lt;p&gt;Returns the value of attribute linktrait_mutation_sig.&lt;/p&gt;
499
+ &lt;/div&gt;&lt;/span&gt;</p>
500
+
501
+ <p>&lt;/li&gt;</p>
502
+
503
+ <pre> &lt;li class=&quot;public &quot;&gt;
504
+ &lt;span class=&quot;summary_signature&quot;&gt;
505
+
506
+ &lt;a href=&quot;#mate_multipoint_avg_prob-instance_method&quot; title=&quot;#mate_multipoint_avg_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mate_multipoint_avg_prob&lt;/strong&gt; &lt;/a&gt;
507
+
508
+ &lt;/span&gt;
509
+
510
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
511
+
512
+ <p>&lt;p&gt;Returns the value of attribute mate_multipoint_avg_prob.&lt;/p&gt;
513
+ &lt;/div&gt;&lt;/span&gt;</p>
514
+
515
+ <p>&lt;/li&gt;</p>
516
+
517
+ <pre> &lt;li class=&quot;public &quot;&gt;
518
+ &lt;span class=&quot;summary_signature&quot;&gt;
519
+
520
+ &lt;a href=&quot;#mate_multipoint_prob-instance_method&quot; title=&quot;#mate_multipoint_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mate_multipoint_prob&lt;/strong&gt; &lt;/a&gt;
521
+
522
+ &lt;/span&gt;
523
+
524
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
525
+
526
+ <p>&lt;p&gt;Returns the value of attribute mate_multipoint_prob.&lt;/p&gt;
527
+ &lt;/div&gt;&lt;/span&gt;</p>
528
+
529
+ <p>&lt;/li&gt;</p>
530
+
531
+ <pre> &lt;li class=&quot;public &quot;&gt;
532
+ &lt;span class=&quot;summary_signature&quot;&gt;
533
+
534
+ &lt;a href=&quot;#mate_only_prob-instance_method&quot; title=&quot;#mate_only_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mate_only_prob&lt;/strong&gt; &lt;/a&gt;
535
+
536
+ &lt;/span&gt;
537
+
538
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
539
+
540
+ <p>&lt;p&gt;Returns the value of attribute mate_only_prob.&lt;/p&gt;
541
+ &lt;/div&gt;&lt;/span&gt;</p>
542
+
543
+ <p>&lt;/li&gt;</p>
544
+
545
+ <pre> &lt;li class=&quot;public &quot;&gt;
546
+ &lt;span class=&quot;summary_signature&quot;&gt;
547
+
548
+ &lt;a href=&quot;#mate_singlepoint_prob-instance_method&quot; title=&quot;#mate_singlepoint_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mate_singlepoint_prob&lt;/strong&gt; &lt;/a&gt;
549
+
550
+ &lt;/span&gt;
551
+
552
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
553
+
554
+ <p>&lt;p&gt;Returns the value of attribute mate_singlepoint_prob.&lt;/p&gt;
555
+ &lt;/div&gt;&lt;/span&gt;</p>
556
+
557
+ <p>&lt;/li&gt;</p>
558
+
559
+ <pre> &lt;li class=&quot;public &quot;&gt;
560
+ &lt;span class=&quot;summary_signature&quot;&gt;
561
+
562
+ &lt;a href=&quot;#max_generations-instance_method&quot; title=&quot;#max_generations (instance method)&quot;&gt;- (Object) &lt;strong&gt;max_generations&lt;/strong&gt; &lt;/a&gt;
563
+
564
+ &lt;/span&gt;
565
+
566
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
567
+
568
+ <p>&lt;p&gt;Maximum number of generations to run, if given.&lt;/p&gt;
569
+ &lt;/div&gt;&lt;/span&gt;</p>
570
+
571
+ <p>&lt;/li&gt;</p>
572
+
573
+ <pre> &lt;li class=&quot;public &quot;&gt;
574
+ &lt;span class=&quot;summary_signature&quot;&gt;
575
+
576
+ &lt;a href=&quot;#max_population_history-instance_method&quot; title=&quot;#max_population_history (instance method)&quot;&gt;- (Object) &lt;strong&gt;max_population_history&lt;/strong&gt; &lt;/a&gt;
577
+
578
+ &lt;/span&gt;
579
+
580
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
581
+
582
+ <p>&lt;p&gt;Maximun number of populations to maintain in the history
583
+ buffer.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
584
+
585
+ <p>&lt;/li&gt;</p>
586
+
587
+ <pre> &lt;li class=&quot;public &quot;&gt;
588
+ &lt;span class=&quot;summary_signature&quot;&gt;
589
+
590
+ &lt;a href=&quot;#max_species-instance_method&quot; title=&quot;#max_species (instance method)&quot;&gt;- (Object) &lt;strong&gt;max_species&lt;/strong&gt; &lt;/a&gt;
591
+
592
+ &lt;/span&gt;
593
+
594
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
595
+
596
+ <p>&lt;p&gt;Max target number of species (will result in the
597
+ compatability_coeifficient being adjusted automatically.&lt;/p&gt;
598
+ &lt;/div&gt;&lt;/span&gt;</p>
599
+
600
+ <p>&lt;/li&gt;</p>
601
+
602
+ <pre> &lt;li class=&quot;public &quot;&gt;
603
+ &lt;span class=&quot;summary_signature&quot;&gt;
604
+
605
+ &lt;a href=&quot;#mutate_add_gene_prob-instance_method&quot; title=&quot;#mutate_add_gene_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_add_gene_prob&lt;/strong&gt; &lt;/a&gt;
606
+
607
+ &lt;/span&gt;
608
+
609
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
610
+
611
+ <p>&lt;p&gt;Returns the value of attribute mutate_add_gene_prob.&lt;/p&gt;
612
+ &lt;/div&gt;&lt;/span&gt;</p>
613
+
614
+ <p>&lt;/li&gt;</p>
615
+
616
+ <pre> &lt;li class=&quot;public &quot;&gt;
617
+ &lt;span class=&quot;summary_signature&quot;&gt;
618
+
619
+ &lt;a href=&quot;#mutate_add_neuron_prob-instance_method&quot; title=&quot;#mutate_add_neuron_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_add_neuron_prob&lt;/strong&gt; &lt;/a&gt;
620
+
621
+ &lt;/span&gt;
622
+
623
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
624
+
625
+ <p>&lt;p&gt;Returns the value of attribute mutate_add_neuron_prob.&lt;/p&gt;
626
+ &lt;/div&gt;&lt;/span&gt;</p>
627
+
628
+ <p>&lt;/li&gt;</p>
629
+
630
+ <pre> &lt;li class=&quot;public &quot;&gt;
631
+ &lt;span class=&quot;summary_signature&quot;&gt;
632
+
633
+ &lt;a href=&quot;#mutate_change_gene_weights_prob-instance_method&quot; title=&quot;#mutate_change_gene_weights_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_change_gene_weights_prob&lt;/strong&gt; &lt;/a&gt;
634
+
635
+ &lt;/span&gt;
636
+
637
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
638
+
639
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
640
+ overwrites).&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
641
+
642
+ <p>&lt;/li&gt;</p>
643
+
644
+ <pre> &lt;li class=&quot;public &quot;&gt;
645
+ &lt;span class=&quot;summary_signature&quot;&gt;
646
+
647
+ &lt;a href=&quot;#mutate_change_gene_weights_sd-instance_method&quot; title=&quot;#mutate_change_gene_weights_sd (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_change_gene_weights_sd&lt;/strong&gt; &lt;/a&gt;
648
+
649
+ &lt;/span&gt;
650
+
651
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
652
+
653
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
654
+ overwrites).&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
655
+
656
+ <p>&lt;/li&gt;</p>
657
+
658
+ <pre> &lt;li class=&quot;public &quot;&gt;
659
+ &lt;span class=&quot;summary_signature&quot;&gt;
660
+
661
+ &lt;a href=&quot;#mutate_gene_disable_prob-instance_method&quot; title=&quot;#mutate_gene_disable_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_gene_disable_prob&lt;/strong&gt; &lt;/a&gt;
662
+
663
+ &lt;/span&gt;
664
+
665
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
666
+
667
+ <p>&lt;p&gt;Returns the value of attribute mutate_gene_disable_prob.&lt;/p&gt;
668
+ &lt;/div&gt;&lt;/span&gt;</p>
669
+
670
+ <p>&lt;/li&gt;</p>
671
+
672
+ <pre> &lt;li class=&quot;public &quot;&gt;
673
+ &lt;span class=&quot;summary_signature&quot;&gt;
674
+
675
+ &lt;a href=&quot;#mutate_gene_reenable_prob-instance_method&quot; title=&quot;#mutate_gene_reenable_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_gene_reenable_prob&lt;/strong&gt; &lt;/a&gt;
676
+
677
+ &lt;/span&gt;
678
+
679
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
680
+
681
+ <p>&lt;p&gt;Returns the value of attribute
682
+ mutate_gene_reenable_prob.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
683
+
684
+ <p>&lt;/li&gt;</p>
685
+
686
+ <pre> &lt;li class=&quot;public &quot;&gt;
687
+ &lt;span class=&quot;summary_signature&quot;&gt;
688
+
689
+ &lt;a href=&quot;#mutate_gene_trait_prob-instance_method&quot; title=&quot;#mutate_gene_trait_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_gene_trait_prob&lt;/strong&gt; &lt;/a&gt;
690
+
691
+ &lt;/span&gt;
692
+
693
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
694
+
695
+ <p>&lt;p&gt;Returns the value of attribute mutate_gene_trait_prob.&lt;/p&gt;
696
+ &lt;/div&gt;&lt;/span&gt;</p>
697
+
698
+ <p>&lt;/li&gt;</p>
699
+
700
+ <pre> &lt;li class=&quot;public &quot;&gt;
701
+ &lt;span class=&quot;summary_signature&quot;&gt;
702
+
703
+ &lt;a href=&quot;#mutate_neuron_trait_prob-instance_method&quot; title=&quot;#mutate_neuron_trait_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_neuron_trait_prob&lt;/strong&gt; &lt;/a&gt;
704
+
705
+ &lt;/span&gt;
706
+
707
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
708
+
709
+ <p>&lt;p&gt;Returns the value of attribute mutate_neuron_trait_prob.&lt;/p&gt;
710
+ &lt;/div&gt;&lt;/span&gt;</p>
711
+
712
+ <p>&lt;/li&gt;</p>
713
+
714
+ <pre> &lt;li class=&quot;public &quot;&gt;
715
+ &lt;span class=&quot;summary_signature&quot;&gt;
716
+
717
+ &lt;a href=&quot;#mutate_only_prob-instance_method&quot; title=&quot;#mutate_only_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_only_prob&lt;/strong&gt; &lt;/a&gt;
718
+
719
+ &lt;/span&gt;
720
+
721
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
722
+
723
+ <p>&lt;p&gt;Returns the value of attribute mutate_only_prob.&lt;/p&gt;
724
+ &lt;/div&gt;&lt;/span&gt;</p>
725
+
726
+ <p>&lt;/li&gt;</p>
727
+
728
+ <pre> &lt;li class=&quot;public &quot;&gt;
729
+ &lt;span class=&quot;summary_signature&quot;&gt;
730
+
731
+ &lt;a href=&quot;#mutate_perturb_gene_weights_prob-instance_method&quot; title=&quot;#mutate_perturb_gene_weights_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_perturb_gene_weights_prob&lt;/strong&gt; &lt;/a&gt;
732
+
733
+ &lt;/span&gt;
734
+
735
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
736
+
737
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
738
+ overwrites).&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
739
+
740
+ <p>&lt;/li&gt;</p>
741
+
742
+ <pre> &lt;li class=&quot;public &quot;&gt;
743
+ &lt;span class=&quot;summary_signature&quot;&gt;
744
+
745
+ &lt;a href=&quot;#mutate_perturb_gene_weights_sd-instance_method&quot; title=&quot;#mutate_perturb_gene_weights_sd (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_perturb_gene_weights_sd&lt;/strong&gt; &lt;/a&gt;
746
+
747
+ &lt;/span&gt;
748
+
749
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
750
+
751
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
752
+ overwrites).&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
753
+
754
+ <p>&lt;/li&gt;</p>
755
+
756
+ <pre> &lt;li class=&quot;public &quot;&gt;
757
+ &lt;span class=&quot;summary_signature&quot;&gt;
758
+
759
+ &lt;a href=&quot;#mutate_random_trait_prob-instance_method&quot; title=&quot;#mutate_random_trait_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_random_trait_prob&lt;/strong&gt; &lt;/a&gt;
760
+
761
+ &lt;/span&gt;
762
+
763
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
764
+
765
+ <p>&lt;p&gt;Returns the value of attribute mutate_random_trait_prob.&lt;/p&gt;
766
+ &lt;/div&gt;&lt;/span&gt;</p>
767
+
768
+ <p>&lt;/li&gt;</p>
769
+
770
+ <pre> &lt;li class=&quot;public &quot;&gt;
771
+ &lt;span class=&quot;summary_signature&quot;&gt;
772
+
773
+ &lt;a href=&quot;#mutate_toggle_enable_prob-instance_method&quot; title=&quot;#mutate_toggle_enable_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutate_toggle_enable_prob&lt;/strong&gt; &lt;/a&gt;
774
+
775
+ &lt;/span&gt;
776
+
777
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
778
+
779
+ <p>&lt;p&gt;Returns the value of attribute
780
+ mutate_toggle_enable_prob.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
781
+
782
+ <p>&lt;/li&gt;</p>
783
+
784
+ <pre> &lt;li class=&quot;public &quot;&gt;
785
+ &lt;span class=&quot;summary_signature&quot;&gt;
786
+
787
+ &lt;a href=&quot;#mutdiff_coefficient-instance_method&quot; title=&quot;#mutdiff_coefficient (instance method)&quot;&gt;- (Object) &lt;strong&gt;mutdiff_coefficient&lt;/strong&gt; &lt;/a&gt;
788
+
789
+ &lt;/span&gt;
790
+
791
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
792
+
793
+ <p>&lt;p&gt;Returns the value of attribute mutdiff_coefficient.&lt;/p&gt;
794
+ &lt;/div&gt;&lt;/span&gt;</p>
795
+
796
+ <p>&lt;/li&gt;</p>
797
+
798
+ <pre> &lt;li class=&quot;public &quot;&gt;
799
+ &lt;span class=&quot;summary_signature&quot;&gt;
800
+
801
+ &lt;a href=&quot;#neuron_trait_mut_sig-instance_method&quot; title=&quot;#neuron_trait_mut_sig (instance method)&quot;&gt;- (Object) &lt;strong&gt;neuron_trait_mut_sig&lt;/strong&gt; &lt;/a&gt;
802
+
803
+ &lt;/span&gt;
804
+
805
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
806
+
807
+ <p>&lt;p&gt;Returns the value of attribute neuron_trait_mut_sig.&lt;/p&gt;
808
+ &lt;/div&gt;&lt;/span&gt;</p>
809
+
810
+ <p>&lt;/li&gt;</p>
811
+
812
+ <pre> &lt;li class=&quot;public &quot;&gt;
813
+ &lt;span class=&quot;summary_signature&quot;&gt;
814
+
815
+ &lt;a href=&quot;#newlink_tries-instance_method&quot; title=&quot;#newlink_tries (instance method)&quot;&gt;- (Object) &lt;strong&gt;newlink_tries&lt;/strong&gt; &lt;/a&gt;
816
+
817
+ &lt;/span&gt;
818
+
819
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
820
+
821
+ <p>&lt;p&gt;Returns the value of attribute newlink_tries.&lt;/p&gt;
822
+ &lt;/div&gt;&lt;/span&gt;</p>
823
+
824
+ <p>&lt;/li&gt;</p>
825
+
826
+ <pre> &lt;li class=&quot;public &quot;&gt;
827
+ &lt;span class=&quot;summary_signature&quot;&gt;
828
+
829
+ &lt;a href=&quot;#population_size-instance_method&quot; title=&quot;#population_size (instance method)&quot;&gt;- (Object) &lt;strong&gt;population_size&lt;/strong&gt; &lt;/a&gt;
830
+
831
+ &lt;/span&gt;
832
+
833
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
834
+
835
+ <p>&lt;p&gt;If set, will start off at the specified size and grow to the
836
+ bigger population size.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
837
+
838
+ <p>&lt;/li&gt;</p>
839
+
840
+ <pre> &lt;li class=&quot;public &quot;&gt;
841
+ &lt;span class=&quot;summary_signature&quot;&gt;
842
+
843
+ &lt;a href=&quot;#print_every-instance_method&quot; title=&quot;#print_every (instance method)&quot;&gt;- (Object) &lt;strong&gt;print_every&lt;/strong&gt; &lt;/a&gt;
844
+
845
+ &lt;/span&gt;
846
+
847
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
848
+
849
+ <p>&lt;p&gt;Returns the value of attribute print_every.&lt;/p&gt;
850
+ &lt;/div&gt;&lt;/span&gt;</p>
851
+
852
+ <p>&lt;/li&gt;</p>
853
+
854
+ <pre> &lt;li class=&quot;public &quot;&gt;
855
+ &lt;span class=&quot;summary_signature&quot;&gt;
856
+
857
+ &lt;a href=&quot;#real_time_switch-instance_method&quot; title=&quot;#real_time_switch (instance method)&quot;&gt;- (Object) &lt;strong&gt;real_time_switch&lt;/strong&gt; &lt;/a&gt;
858
+
859
+ &lt;/span&gt;
860
+
861
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
862
+
863
+ <p>&lt;p&gt;Enable RT-NEAT, for gradual evolution suitable for games and other
864
+ human-interactive systems.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
865
+
866
+ <p>&lt;/li&gt;</p>
867
+
868
+ <pre> &lt;li class=&quot;public &quot;&gt;
869
+ &lt;span class=&quot;summary_signature&quot;&gt;
870
+
871
+ &lt;a href=&quot;#recur_only_prob-instance_method&quot; title=&quot;#recur_only_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;recur_only_prob&lt;/strong&gt; &lt;/a&gt;
872
+
873
+ &lt;/span&gt;
874
+
875
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
876
+
877
+ <p>&lt;p&gt;Returns the value of attribute recur_only_prob.&lt;/p&gt;
878
+ &lt;/div&gt;&lt;/span&gt;</p>
879
+
880
+ <p>&lt;/li&gt;</p>
881
+
882
+ <pre> &lt;li class=&quot;public &quot;&gt;
883
+ &lt;span class=&quot;summary_signature&quot;&gt;
884
+
885
+ &lt;a href=&quot;#recur_prob-instance_method&quot; title=&quot;#recur_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;recur_prob&lt;/strong&gt; &lt;/a&gt;
886
+
887
+ &lt;/span&gt;
888
+
889
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
890
+
891
+ <p>&lt;p&gt;Returns the value of attribute recur_prob.&lt;/p&gt;
892
+ &lt;/div&gt;&lt;/span&gt;</p>
893
+
894
+ <p>&lt;/li&gt;</p>
895
+
896
+ <pre> &lt;li class=&quot;public &quot;&gt;
897
+ &lt;span class=&quot;summary_signature&quot;&gt;
898
+
899
+ &lt;a href=&quot;#recurrency_switch-instance_method&quot; title=&quot;#recurrency_switch (instance method)&quot;&gt;- (Object) &lt;strong&gt;recurrency_switch&lt;/strong&gt; &lt;/a&gt;
900
+
901
+ &lt;/span&gt;
902
+
903
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
904
+
905
+ <p>&lt;p&gt;If true, allow for recurrent networks.&lt;/p&gt;
906
+ &lt;/div&gt;&lt;/span&gt;</p>
907
+
908
+ <p>&lt;/li&gt;</p>
909
+
910
+ <pre> &lt;li class=&quot;public &quot;&gt;
911
+ &lt;span class=&quot;summary_signature&quot;&gt;
912
+
913
+ &lt;a href=&quot;#smallest_species-instance_method&quot; title=&quot;#smallest_species (instance method)&quot;&gt;- (Object) &lt;strong&gt;smallest_species&lt;/strong&gt; &lt;/a&gt;
914
+
915
+ &lt;/span&gt;
916
+
917
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
918
+
919
+ <p>&lt;p&gt;Species smallest population allowed (coalse smaller species into
920
+ one).&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
921
+
922
+ <p>&lt;/li&gt;</p>
923
+
924
+ <pre> &lt;li class=&quot;public &quot;&gt;
925
+ &lt;span class=&quot;summary_signature&quot;&gt;
926
+
927
+ &lt;a href=&quot;#start_population_size-instance_method&quot; title=&quot;#start_population_size (instance method)&quot;&gt;- (Object) &lt;strong&gt;start_population_size&lt;/strong&gt; &lt;/a&gt;
928
+
929
+ &lt;/span&gt;
930
+
931
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
932
+
933
+ <p>&lt;p&gt;If set, will start off at the specified size and grow to the
934
+ bigger population size.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
935
+
936
+ <p>&lt;/li&gt;</p>
937
+
938
+ <pre> &lt;li class=&quot;public &quot;&gt;
939
+ &lt;span class=&quot;summary_signature&quot;&gt;
940
+
941
+ &lt;a href=&quot;#start_sequence_at-instance_method&quot; title=&quot;#start_sequence_at (instance method)&quot;&gt;- (Object) &lt;strong&gt;start_sequence_at&lt;/strong&gt; &lt;/a&gt;
942
+
943
+ &lt;/span&gt;
944
+
945
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
946
+
947
+ <p>&lt;p&gt;Returns the value of attribute start_sequence_at.&lt;/p&gt;
948
+ &lt;/div&gt;&lt;/span&gt;</p>
949
+
950
+ <p>&lt;/li&gt;</p>
951
+
952
+ <pre> &lt;li class=&quot;public &quot;&gt;
953
+ &lt;span class=&quot;summary_signature&quot;&gt;
954
+
955
+ &lt;a href=&quot;#survival_mininum_per_species-instance_method&quot; title=&quot;#survival_mininum_per_species (instance method)&quot;&gt;- (Object) &lt;strong&gt;survival_mininum_per_species&lt;/strong&gt; &lt;/a&gt;
956
+
957
+ &lt;/span&gt;
958
+
959
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
960
+
961
+ <p>&lt;p&gt;Returns the value of attribute
962
+ survival_mininum_per_species.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
963
+
964
+ <p>&lt;/li&gt;</p>
965
+
966
+ <pre> &lt;li class=&quot;public &quot;&gt;
967
+ &lt;span class=&quot;summary_signature&quot;&gt;
968
+
969
+ &lt;a href=&quot;#survival_threshold-instance_method&quot; title=&quot;#survival_threshold (instance method)&quot;&gt;- (Object) &lt;strong&gt;survival_threshold&lt;/strong&gt; &lt;/a&gt;
970
+
971
+ &lt;/span&gt;
972
+
973
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
974
+
975
+ <p>&lt;p&gt;factor (0 to 1) of the top percentage of the species
976
+ that&amp;#39;s allowed to mate.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
977
+
978
+ <p>&lt;/li&gt;</p>
979
+
980
+ <pre> &lt;li class=&quot;public &quot;&gt;
981
+ &lt;span class=&quot;summary_signature&quot;&gt;
982
+
983
+ &lt;a href=&quot;#trait_mutation_power-instance_method&quot; title=&quot;#trait_mutation_power (instance method)&quot;&gt;- (Object) &lt;strong&gt;trait_mutation_power&lt;/strong&gt; &lt;/a&gt;
984
+
985
+ &lt;/span&gt;
986
+
987
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
988
+
989
+ <p>&lt;p&gt;Returns the value of attribute trait_mutation_power.&lt;/p&gt;
990
+ &lt;/div&gt;&lt;/span&gt;</p>
991
+
992
+ <p>&lt;/li&gt;</p>
993
+
994
+ <pre> &lt;li class=&quot;public &quot;&gt;
995
+ &lt;span class=&quot;summary_signature&quot;&gt;
996
+
997
+ &lt;a href=&quot;#trait_param_mut_prob-instance_method&quot; title=&quot;#trait_param_mut_prob (instance method)&quot;&gt;- (Object) &lt;strong&gt;trait_param_mut_prob&lt;/strong&gt; &lt;/a&gt;
998
+
999
+ &lt;/span&gt;
1000
+
1001
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
1002
+
1003
+ <p>&lt;p&gt;Returns the value of attribute trait_param_mut_prob.&lt;/p&gt;
1004
+ &lt;/div&gt;&lt;/span&gt;</p>
1005
+
1006
+ <p>&lt;/li&gt;</p>
1007
+
1008
+ <pre> &lt;li class=&quot;public &quot;&gt;
1009
+ &lt;span class=&quot;summary_signature&quot;&gt;
1010
+
1011
+ &lt;a href=&quot;#weigh_mut_power-instance_method&quot; title=&quot;#weigh_mut_power (instance method)&quot;&gt;- (Object) &lt;strong&gt;weigh_mut_power&lt;/strong&gt; &lt;/a&gt;
1012
+
1013
+ &lt;/span&gt;
1014
+
1015
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
1016
+
1017
+ <p>&lt;p&gt;Returns the value of attribute weigh_mut_power.&lt;/p&gt;
1018
+ &lt;/div&gt;&lt;/span&gt;</p>
1019
+
1020
+ <p>&lt;/li&gt;</p>
1021
+
1022
+ <pre> &lt;li class=&quot;public &quot;&gt;
1023
+ &lt;span class=&quot;summary_signature&quot;&gt;
1024
+
1025
+ &lt;a href=&quot;#weight_coefficient-instance_method&quot; title=&quot;#weight_coefficient (instance method)&quot;&gt;- (Object) &lt;strong&gt;weight_coefficient&lt;/strong&gt; &lt;/a&gt;
1026
+
1027
+ &lt;/span&gt;
1028
+
1029
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
1030
+
1031
+ <p>&lt;p&gt;Speciation coffficient.&lt;/p&gt; &lt;/div&gt;&lt;/span&gt;</p>
1032
+
1033
+ <p>&lt;/li&gt;</p>
1034
+
1035
+ <pre>&lt;/ul&gt;
1036
+
1037
+ &lt;h3 class=&quot;inherited&quot;&gt;Attributes inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/h3&gt;
1038
+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html#controller-instance_method&quot; title=&quot;NEAT::NeatOb#controller (method)&quot;&gt;#controller&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html#name-instance_method&quot; title=&quot;NEAT::NeatOb#name (method)&quot;&gt;#name&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
1039
+
1040
+ &lt;h2&gt;
1041
+ Instance Method Summary
1042
+ &lt;small&gt;(&lt;a href=&quot;#&quot; class=&quot;summary_toggle&quot;&gt;collapse&lt;/a&gt;)&lt;/small&gt;
1043
+ &lt;/h2&gt;
1044
+
1045
+ &lt;ul class=&quot;summary&quot;&gt;
1046
+
1047
+ &lt;li class=&quot;public &quot;&gt;
1048
+ &lt;span class=&quot;summary_signature&quot;&gt;
1049
+
1050
+ &lt;a href=&quot;#initialize-instance_method&quot; title=&quot;#initialize (instance method)&quot;&gt;- (NeatSettings) &lt;strong&gt;initialize&lt;/strong&gt; &lt;/a&gt;
1051
+
1052
+ &lt;/span&gt;
1053
+
1054
+ &lt;span class=&quot;note title constructor&quot;&gt;constructor&lt;/span&gt;
1055
+
1056
+ &lt;span class=&quot;summary_desc&quot;&gt;&lt;div class=&#39;inline&#39;&gt;</pre>
1057
+
1058
+ <p>&lt;p&gt;Set up defaults for mandatory entries.&lt;/p&gt;
1059
+ &lt;/div&gt;&lt;/span&gt;</p>
1060
+
1061
+ <p>&lt;/li&gt;</p>
1062
+
1063
+ <pre> &lt;/ul&gt;
1064
+
1065
+ &lt;h3 class=&quot;inherited&quot;&gt;Methods inherited from &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html&quot; title=&quot;NEAT::NeatOb (class)&quot;&gt;NeatOb&lt;/a&gt;&lt;/span&gt;&lt;/h3&gt;
1066
+ &lt;p class=&quot;inherited&quot;&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html#log-instance_method&quot; title=&quot;NEAT::NeatOb#log (method)&quot;&gt;#log&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html#log-class_method&quot; title=&quot;NEAT::NeatOb.log (method)&quot;&gt;log&lt;/a&gt;&lt;/span&gt;, &lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;../NeatOb.html#to_s-instance_method&quot; title=&quot;NEAT::NeatOb#to_s (method)&quot;&gt;#to_s&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;
1067
+
1068
+ &lt;div id=&quot;constructor_details&quot; class=&quot;method_details_list&quot;&gt;
1069
+ &lt;h2&gt;Constructor Details&lt;/h2&gt;
1070
+
1071
+ &lt;div class=&quot;method_details first&quot;&gt;
1072
+ &lt;h3 class=&quot;signature first&quot; id=&quot;initialize-instance_method&quot;&gt;
1073
+
1074
+ - (&lt;tt&gt;&lt;span class=&#39;object_link&#39;&gt;&lt;a href=&quot;&quot; title=&quot;NEAT::Controller::NeatSettings (class)&quot;&gt;NeatSettings&lt;/a&gt;&lt;/span&gt;&lt;/tt&gt;) &lt;strong&gt;initialize&lt;/strong&gt;</pre>
1075
+
1076
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1077
+
1078
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1079
+
1080
+ <p>&lt;p&gt;Set up defaults for mandatory entries.&lt;/p&gt;</p>
1081
+
1082
+ <pre>&lt;/div&gt;</pre>
1083
+
1084
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1085
+
1086
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1087
+
1088
+ <pre>&lt;tr&gt;
1089
+ &lt;td&gt;
1090
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1091
+
1092
+ <p>318 319 320 321 322 323 324 325 326 327 328&lt;/pre&gt;</p>
1093
+
1094
+ <pre>&lt;/td&gt;
1095
+ &lt;td&gt;
1096
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 318&lt;/span&gt;</pre>
1097
+
1098
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1099
+ identifier rubyid_initialize&#39;&gt;initialize&lt;/span&gt;</p>
1100
+
1101
+ <pre>&lt;span class=&#39;kw&#39;&gt;super&lt;/span&gt;
1102
+ &lt;span class=&#39;ivar&#39;&gt;@start_sequence_at&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;int&#39;&gt;0&lt;/span&gt;
1103
+ &lt;span class=&#39;ivar&#39;&gt;@end_sequence_at&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;int&#39;&gt;100&lt;/span&gt;
1104
+ &lt;span class=&#39;ivar&#39;&gt;@max_generations&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;int&#39;&gt;1000&lt;/span&gt;
1105
+
1106
+ &lt;span class=&#39;comment&#39;&gt;# Default operators</pre>
1107
+
1108
+ <p>&lt;/span&gt; &lt;span class=&#39;ivar&#39;&gt;@evaluator&lt;/span&gt;
1109
+ &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span
1110
+ class=&#39;const&#39;&gt;Evaluator&lt;/span&gt;&lt;span
1111
+ class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier
1112
+ rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span
1113
+ class=&#39;kw&#39;&gt;self&lt;/span&gt;</p>
1114
+
1115
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@expressor&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Expressor&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;self&lt;/span&gt;
1116
+ &lt;span class=&#39;ivar&#39;&gt;@evolver&lt;/span&gt; &lt;span class=&#39;op&#39;&gt;=&lt;/span&gt; &lt;span class=&#39;const&#39;&gt;Evolver&lt;/span&gt;&lt;span class=&#39;period&#39;&gt;.&lt;/span&gt;&lt;span class=&#39;id identifier rubyid_new&#39;&gt;new&lt;/span&gt; &lt;span class=&#39;kw&#39;&gt;self&lt;/span&gt;</pre>
1117
+
1118
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1119
+
1120
+ <pre> &lt;/td&gt;
1121
+ &lt;/tr&gt;</pre>
1122
+
1123
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1124
+
1125
+ <p>&lt;/div&gt;</p>
1126
+
1127
+ <pre>&lt;div id=&quot;instance_attr_details&quot; class=&quot;attr_details&quot;&gt;
1128
+ &lt;h2&gt;Instance Attribute Details&lt;/h2&gt;
1129
+
1130
+ &lt;span id=&quot;age_significance=-instance_method&quot;&gt;&lt;/span&gt;
1131
+ &lt;div class=&quot;method_details first&quot;&gt;
1132
+ &lt;h3 class=&quot;signature first&quot; id=&quot;age_significance-instance_method&quot;&gt;
1133
+
1134
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;age_significance&lt;/strong&gt;</pre>
1135
+
1136
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1137
+
1138
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1139
+
1140
+ <p>&lt;p&gt;based on the C version of <a
1141
+ href="../../../NEAT.html">NEAT</a>&lt;/p&gt;</p>
1142
+
1143
+ <pre>&lt;/div&gt;</pre>
1144
+
1145
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1146
+
1147
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1148
+
1149
+ <pre>&lt;tr&gt;
1150
+ &lt;td&gt;
1151
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1152
+
1153
+ <p>217 218 219&lt;/pre&gt;</p>
1154
+
1155
+ <pre>&lt;/td&gt;
1156
+ &lt;td&gt;
1157
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 217&lt;/span&gt;</pre>
1158
+
1159
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1160
+ identifier rubyid_age_significance&#39;&gt;age_significance&lt;/span&gt;</p>
1161
+
1162
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@age_significance&lt;/span&gt;</pre>
1163
+
1164
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1165
+
1166
+ <pre> &lt;/td&gt;
1167
+ &lt;/tr&gt;</pre>
1168
+
1169
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1170
+
1171
+ <pre> &lt;span id=&quot;babies_stolen=-instance_method&quot;&gt;&lt;/span&gt;
1172
+ &lt;div class=&quot;method_details &quot;&gt;
1173
+ &lt;h3 class=&quot;signature &quot; id=&quot;babies_stolen-instance_method&quot;&gt;
1174
+
1175
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;babies_stolen&lt;/strong&gt;</pre>
1176
+
1177
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1178
+
1179
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1180
+
1181
+ <p>&lt;p&gt;Returns the value of attribute babies_stolen&lt;/p&gt;</p>
1182
+
1183
+ <pre>&lt;/div&gt;</pre>
1184
+
1185
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1186
+
1187
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1188
+
1189
+ <pre>&lt;tr&gt;
1190
+ &lt;td&gt;
1191
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1192
+
1193
+ <p>218 219 220&lt;/pre&gt;</p>
1194
+
1195
+ <pre>&lt;/td&gt;
1196
+ &lt;td&gt;
1197
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 218&lt;/span&gt;</pre>
1198
+
1199
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1200
+ identifier rubyid_babies_stolen&#39;&gt;babies_stolen&lt;/span&gt;</p>
1201
+
1202
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@babies_stolen&lt;/span&gt;</pre>
1203
+
1204
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1205
+
1206
+ <pre> &lt;/td&gt;
1207
+ &lt;/tr&gt;</pre>
1208
+
1209
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1210
+
1211
+ <pre> &lt;span id=&quot;compatibility_threshold=-instance_method&quot;&gt;&lt;/span&gt;
1212
+ &lt;div class=&quot;method_details &quot;&gt;
1213
+ &lt;h3 class=&quot;signature &quot; id=&quot;compatibility_threshold-instance_method&quot;&gt;
1214
+
1215
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;compatibility_threshold&lt;/strong&gt;</pre>
1216
+
1217
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1218
+
1219
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1220
+
1221
+ <p>&lt;p&gt;Species compatability threshold&lt;/p&gt;</p>
1222
+
1223
+ <pre>&lt;/div&gt;</pre>
1224
+
1225
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1226
+
1227
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1228
+
1229
+ <pre>&lt;tr&gt;
1230
+ &lt;td&gt;
1231
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1232
+
1233
+ <p>221 222 223&lt;/pre&gt;</p>
1234
+
1235
+ <pre>&lt;/td&gt;
1236
+ &lt;td&gt;
1237
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 221&lt;/span&gt;</pre>
1238
+
1239
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1240
+ identifier
1241
+ rubyid_compatibility_threshold&#39;&gt;compatibility_threshold&lt;/span&gt;</p>
1242
+
1243
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@compatibility_threshold&lt;/span&gt;</pre>
1244
+
1245
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1246
+
1247
+ <pre> &lt;/td&gt;
1248
+ &lt;/tr&gt;</pre>
1249
+
1250
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1251
+
1252
+ <pre> &lt;span id=&quot;disjoint_coefficient=-instance_method&quot;&gt;&lt;/span&gt;
1253
+ &lt;div class=&quot;method_details &quot;&gt;
1254
+ &lt;h3 class=&quot;signature &quot; id=&quot;disjoint_coefficient-instance_method&quot;&gt;
1255
+
1256
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;disjoint_coefficient&lt;/strong&gt;</pre>
1257
+
1258
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1259
+
1260
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1261
+
1262
+ <p>&lt;p&gt;Speciation coffficient&lt;/p&gt;</p>
1263
+
1264
+ <pre>&lt;/div&gt;</pre>
1265
+
1266
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1267
+
1268
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1269
+
1270
+ <pre>&lt;tr&gt;
1271
+ &lt;td&gt;
1272
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1273
+
1274
+ <p>224 225 226&lt;/pre&gt;</p>
1275
+
1276
+ <pre>&lt;/td&gt;
1277
+ &lt;td&gt;
1278
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 224&lt;/span&gt;</pre>
1279
+
1280
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1281
+ identifier
1282
+ rubyid_disjoint_coefficient&#39;&gt;disjoint_coefficient&lt;/span&gt;</p>
1283
+
1284
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@disjoint_coefficient&lt;/span&gt;</pre>
1285
+
1286
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1287
+
1288
+ <pre> &lt;/td&gt;
1289
+ &lt;/tr&gt;</pre>
1290
+
1291
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1292
+
1293
+ <pre> &lt;span id=&quot;dropoff_age=-instance_method&quot;&gt;&lt;/span&gt;
1294
+ &lt;div class=&quot;method_details &quot;&gt;
1295
+ &lt;h3 class=&quot;signature &quot; id=&quot;dropoff_age-instance_method&quot;&gt;
1296
+
1297
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;dropoff_age&lt;/strong&gt;</pre>
1298
+
1299
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1300
+
1301
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1302
+
1303
+ <p>&lt;p&gt;Species Peality age for not making progress&lt;/p&gt;</p>
1304
+
1305
+ <pre>&lt;/div&gt;</pre>
1306
+
1307
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1308
+
1309
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1310
+
1311
+ <pre>&lt;tr&gt;
1312
+ &lt;td&gt;
1313
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1314
+
1315
+ <p>231 232 233&lt;/pre&gt;</p>
1316
+
1317
+ <pre>&lt;/td&gt;
1318
+ &lt;td&gt;
1319
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 231&lt;/span&gt;</pre>
1320
+
1321
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1322
+ identifier rubyid_dropoff_age&#39;&gt;dropoff_age&lt;/span&gt;</p>
1323
+
1324
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@dropoff_age&lt;/span&gt;</pre>
1325
+
1326
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1327
+
1328
+ <pre> &lt;/td&gt;
1329
+ &lt;/tr&gt;</pre>
1330
+
1331
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1332
+
1333
+ <pre> &lt;span id=&quot;end_sequence_at=-instance_method&quot;&gt;&lt;/span&gt;
1334
+ &lt;div class=&quot;method_details &quot;&gt;
1335
+ &lt;h3 class=&quot;signature &quot; id=&quot;end_sequence_at-instance_method&quot;&gt;
1336
+
1337
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;end_sequence_at&lt;/strong&gt;</pre>
1338
+
1339
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1340
+
1341
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1342
+
1343
+ <p>&lt;p&gt;Returns the value of attribute end_sequence_at&lt;/p&gt;</p>
1344
+
1345
+ <pre>&lt;/div&gt;</pre>
1346
+
1347
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1348
+
1349
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1350
+
1351
+ <pre>&lt;tr&gt;
1352
+ &lt;td&gt;
1353
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1354
+
1355
+ <p>283 284 285&lt;/pre&gt;</p>
1356
+
1357
+ <pre>&lt;/td&gt;
1358
+ &lt;td&gt;
1359
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 283&lt;/span&gt;</pre>
1360
+
1361
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1362
+ identifier rubyid_end_sequence_at&#39;&gt;end_sequence_at&lt;/span&gt;</p>
1363
+
1364
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@end_sequence_at&lt;/span&gt;</pre>
1365
+
1366
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1367
+
1368
+ <pre> &lt;/td&gt;
1369
+ &lt;/tr&gt;</pre>
1370
+
1371
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1372
+
1373
+ <pre> &lt;span id=&quot;evolved_substrate_switch=-instance_method&quot;&gt;&lt;/span&gt;
1374
+ &lt;div class=&quot;method_details &quot;&gt;
1375
+ &lt;h3 class=&quot;signature &quot; id=&quot;evolved_substrate_switch-instance_method&quot;&gt;
1376
+
1377
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;evolved_substrate_switch&lt;/strong&gt;</pre>
1378
+
1379
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1380
+
1381
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1382
+
1383
+ <p>&lt;p&gt;Enable Evolved Substrate HyperNEAT. Meaningless unless
1384
+ hyper_switch is also enabled.&lt;/p&gt;</p>
1385
+
1386
+ <pre>&lt;/div&gt;</pre>
1387
+
1388
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1389
+
1390
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1391
+
1392
+ <pre>&lt;tr&gt;
1393
+ &lt;td&gt;
1394
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1395
+
1396
+ <p>308 309 310&lt;/pre&gt;</p>
1397
+
1398
+ <pre>&lt;/td&gt;
1399
+ &lt;td&gt;
1400
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 308&lt;/span&gt;</pre>
1401
+
1402
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1403
+ identifier
1404
+ rubyid_evolved_substrate_switch&#39;&gt;evolved_substrate_switch&lt;/span&gt;</p>
1405
+
1406
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@evolved_substrate_switch&lt;/span&gt;</pre>
1407
+
1408
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1409
+
1410
+ <pre> &lt;/td&gt;
1411
+ &lt;/tr&gt;</pre>
1412
+
1413
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1414
+
1415
+ <pre> &lt;span id=&quot;excess_coefficient=-instance_method&quot;&gt;&lt;/span&gt;
1416
+ &lt;div class=&quot;method_details &quot;&gt;
1417
+ &lt;h3 class=&quot;signature &quot; id=&quot;excess_coefficient-instance_method&quot;&gt;
1418
+
1419
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;excess_coefficient&lt;/strong&gt;</pre>
1420
+
1421
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1422
+
1423
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1424
+
1425
+ <p>&lt;p&gt;Speciation coffficient&lt;/p&gt;</p>
1426
+
1427
+ <pre>&lt;/div&gt;</pre>
1428
+
1429
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1430
+
1431
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1432
+
1433
+ <pre>&lt;tr&gt;
1434
+ &lt;td&gt;
1435
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1436
+
1437
+ <p>224 225 226&lt;/pre&gt;</p>
1438
+
1439
+ <pre>&lt;/td&gt;
1440
+ &lt;td&gt;
1441
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 224&lt;/span&gt;</pre>
1442
+
1443
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1444
+ identifier
1445
+ rubyid_excess_coefficient&#39;&gt;excess_coefficient&lt;/span&gt;</p>
1446
+
1447
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@excess_coefficient&lt;/span&gt;</pre>
1448
+
1449
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1450
+
1451
+ <pre> &lt;/td&gt;
1452
+ &lt;/tr&gt;</pre>
1453
+
1454
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1455
+
1456
+ <pre> &lt;span id=&quot;feature_selection_switch=-instance_method&quot;&gt;&lt;/span&gt;
1457
+ &lt;div class=&quot;method_details &quot;&gt;
1458
+ &lt;h3 class=&quot;signature &quot; id=&quot;feature_selection_switch-instance_method&quot;&gt;
1459
+
1460
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;feature_selection_switch&lt;/strong&gt;</pre>
1461
+
1462
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1463
+
1464
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1465
+
1466
+ <p>&lt;p&gt;Enable FS-NEAT&lt;/p&gt;</p>
1467
+
1468
+ <pre>&lt;/div&gt;</pre>
1469
+
1470
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1471
+
1472
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1473
+
1474
+ <pre>&lt;tr&gt;
1475
+ &lt;td&gt;
1476
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1477
+
1478
+ <p>299 300 301&lt;/pre&gt;</p>
1479
+
1480
+ <pre>&lt;/td&gt;
1481
+ &lt;td&gt;
1482
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 299&lt;/span&gt;</pre>
1483
+
1484
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1485
+ identifier
1486
+ rubyid_feature_selection_switch&#39;&gt;feature_selection_switch&lt;/span&gt;</p>
1487
+
1488
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@feature_selection_switch&lt;/span&gt;</pre>
1489
+
1490
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1491
+
1492
+ <pre> &lt;/td&gt;
1493
+ &lt;/tr&gt;</pre>
1494
+
1495
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1496
+
1497
+ <pre> &lt;span id=&quot;fitness_cost_per_gene=-instance_method&quot;&gt;&lt;/span&gt;
1498
+ &lt;div class=&quot;method_details &quot;&gt;
1499
+ &lt;h3 class=&quot;signature &quot; id=&quot;fitness_cost_per_gene-instance_method&quot;&gt;
1500
+
1501
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;fitness_cost_per_gene&lt;/strong&gt;</pre>
1502
+
1503
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1504
+
1505
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1506
+
1507
+ <p>&lt;p&gt;Returns the value of attribute fitness_cost_per_gene&lt;/p&gt;</p>
1508
+
1509
+ <pre>&lt;/div&gt;</pre>
1510
+
1511
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1512
+
1513
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1514
+
1515
+ <pre>&lt;tr&gt;
1516
+ &lt;td&gt;
1517
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1518
+
1519
+ <p>277 278 279&lt;/pre&gt;</p>
1520
+
1521
+ <pre>&lt;/td&gt;
1522
+ &lt;td&gt;
1523
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 277&lt;/span&gt;</pre>
1524
+
1525
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1526
+ identifier
1527
+ rubyid_fitness_cost_per_gene&#39;&gt;fitness_cost_per_gene&lt;/span&gt;</p>
1528
+
1529
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@fitness_cost_per_gene&lt;/span&gt;</pre>
1530
+
1531
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1532
+
1533
+ <pre> &lt;/td&gt;
1534
+ &lt;/tr&gt;</pre>
1535
+
1536
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1537
+
1538
+ <pre> &lt;span id=&quot;fitness_cost_per_neuron=-instance_method&quot;&gt;&lt;/span&gt;
1539
+ &lt;div class=&quot;method_details &quot;&gt;
1540
+ &lt;h3 class=&quot;signature &quot; id=&quot;fitness_cost_per_neuron-instance_method&quot;&gt;
1541
+
1542
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;fitness_cost_per_neuron&lt;/strong&gt;</pre>
1543
+
1544
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1545
+
1546
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1547
+
1548
+ <p>&lt;p&gt;fitness costs, if given, use in the computation of fitness AFTER
1549
+ the overall fitness for the applied stimuli have been caclulated.&lt;/p&gt;</p>
1550
+
1551
+ <pre>&lt;/div&gt;</pre>
1552
+
1553
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1554
+
1555
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1556
+
1557
+ <pre>&lt;tr&gt;
1558
+ &lt;td&gt;
1559
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1560
+
1561
+ <p>276 277 278&lt;/pre&gt;</p>
1562
+
1563
+ <pre>&lt;/td&gt;
1564
+ &lt;td&gt;
1565
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 276&lt;/span&gt;</pre>
1566
+
1567
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1568
+ identifier
1569
+ rubyid_fitness_cost_per_neuron&#39;&gt;fitness_cost_per_neuron&lt;/span&gt;</p>
1570
+
1571
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@fitness_cost_per_neuron&lt;/span&gt;</pre>
1572
+
1573
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1574
+
1575
+ <pre> &lt;/td&gt;
1576
+ &lt;/tr&gt;</pre>
1577
+
1578
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1579
+
1580
+ <pre> &lt;span id=&quot;hash_on_fitness=-instance_method&quot;&gt;&lt;/span&gt;
1581
+ &lt;div class=&quot;method_details &quot;&gt;
1582
+ &lt;h3 class=&quot;signature &quot; id=&quot;hash_on_fitness-instance_method&quot;&gt;
1583
+
1584
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;hash_on_fitness&lt;/strong&gt;</pre>
1585
+
1586
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1587
+
1588
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1589
+
1590
+ <p>&lt;p&gt;Set to true to returned named parameters as hashes to the fitness
1591
+ function (the default is to do ordered arrays)&lt;/p&gt;</p>
1592
+
1593
+ <pre>&lt;/div&gt;</pre>
1594
+
1595
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1596
+
1597
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1598
+
1599
+ <pre>&lt;tr&gt;
1600
+ &lt;td&gt;
1601
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1602
+
1603
+ <p>214 215 216&lt;/pre&gt;</p>
1604
+
1605
+ <pre>&lt;/td&gt;
1606
+ &lt;td&gt;
1607
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 214&lt;/span&gt;</pre>
1608
+
1609
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1610
+ identifier rubyid_hash_on_fitness&#39;&gt;hash_on_fitness&lt;/span&gt;</p>
1611
+
1612
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@hash_on_fitness&lt;/span&gt;</pre>
1613
+
1614
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1615
+
1616
+ <pre> &lt;/td&gt;
1617
+ &lt;/tr&gt;</pre>
1618
+
1619
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1620
+
1621
+ <pre> &lt;span id=&quot;hyper_switch=-instance_method&quot;&gt;&lt;/span&gt;
1622
+ &lt;div class=&quot;method_details &quot;&gt;
1623
+ &lt;h3 class=&quot;signature &quot; id=&quot;hyper_switch-instance_method&quot;&gt;
1624
+
1625
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;hyper_switch&lt;/strong&gt;</pre>
1626
+
1627
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1628
+
1629
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1630
+
1631
+ <p>&lt;p&gt;Enable HyperNEAT. This will result in the critters being
1632
+ interpreted as CPPNs for substrate weights. Additional setup will be
1633
+ necessary.&lt;/p&gt;</p>
1634
+
1635
+ <pre>&lt;/div&gt;</pre>
1636
+
1637
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1638
+
1639
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1640
+
1641
+ <pre>&lt;tr&gt;
1642
+ &lt;td&gt;
1643
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1644
+
1645
+ <p>304 305 306&lt;/pre&gt;</p>
1646
+
1647
+ <pre>&lt;/td&gt;
1648
+ &lt;td&gt;
1649
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 304&lt;/span&gt;</pre>
1650
+
1651
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1652
+ identifier rubyid_hyper_switch&#39;&gt;hyper_switch&lt;/span&gt;</p>
1653
+
1654
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@hyper_switch&lt;/span&gt;</pre>
1655
+
1656
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1657
+
1658
+ <pre> &lt;/td&gt;
1659
+ &lt;/tr&gt;</pre>
1660
+
1661
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1662
+
1663
+ <pre> &lt;span id=&quot;interspecies_mate_rate=-instance_method&quot;&gt;&lt;/span&gt;
1664
+ &lt;div class=&quot;method_details &quot;&gt;
1665
+ &lt;h3 class=&quot;signature &quot; id=&quot;interspecies_mate_rate-instance_method&quot;&gt;
1666
+
1667
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;interspecies_mate_rate&lt;/strong&gt;</pre>
1668
+
1669
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1670
+
1671
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1672
+
1673
+ <p>&lt;p&gt;Ratio of mating are actually interspecies&lt;/p&gt;</p>
1674
+
1675
+ <pre>&lt;/div&gt;</pre>
1676
+
1677
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1678
+
1679
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1680
+
1681
+ <pre>&lt;tr&gt;
1682
+ &lt;td&gt;
1683
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1684
+
1685
+ <p>237 238 239&lt;/pre&gt;</p>
1686
+
1687
+ <pre>&lt;/td&gt;
1688
+ &lt;td&gt;
1689
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 237&lt;/span&gt;</pre>
1690
+
1691
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1692
+ identifier
1693
+ rubyid_interspecies_mate_rate&#39;&gt;interspecies_mate_rate&lt;/span&gt;</p>
1694
+
1695
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@interspecies_mate_rate&lt;/span&gt;</pre>
1696
+
1697
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1698
+
1699
+ <pre> &lt;/td&gt;
1700
+ &lt;/tr&gt;</pre>
1701
+
1702
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1703
+
1704
+ <pre> &lt;span id=&quot;linktrait_mutation_sig=-instance_method&quot;&gt;&lt;/span&gt;
1705
+ &lt;div class=&quot;method_details &quot;&gt;
1706
+ &lt;h3 class=&quot;signature &quot; id=&quot;linktrait_mutation_sig-instance_method&quot;&gt;
1707
+
1708
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;linktrait_mutation_sig&lt;/strong&gt;</pre>
1709
+
1710
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1711
+
1712
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1713
+
1714
+ <p>&lt;p&gt;Returns the value of attribute linktrait_mutation_sig&lt;/p&gt;</p>
1715
+
1716
+ <pre>&lt;/div&gt;</pre>
1717
+
1718
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1719
+
1720
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1721
+
1722
+ <pre>&lt;tr&gt;
1723
+ &lt;td&gt;
1724
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1725
+
1726
+ <p>239 240 241&lt;/pre&gt;</p>
1727
+
1728
+ <pre>&lt;/td&gt;
1729
+ &lt;td&gt;
1730
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 239&lt;/span&gt;</pre>
1731
+
1732
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1733
+ identifier
1734
+ rubyid_linktrait_mutation_sig&#39;&gt;linktrait_mutation_sig&lt;/span&gt;</p>
1735
+
1736
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@linktrait_mutation_sig&lt;/span&gt;</pre>
1737
+
1738
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1739
+
1740
+ <pre> &lt;/td&gt;
1741
+ &lt;/tr&gt;</pre>
1742
+
1743
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1744
+
1745
+ <pre> &lt;span id=&quot;mate_multipoint_avg_prob=-instance_method&quot;&gt;&lt;/span&gt;
1746
+ &lt;div class=&quot;method_details &quot;&gt;
1747
+ &lt;h3 class=&quot;signature &quot; id=&quot;mate_multipoint_avg_prob-instance_method&quot;&gt;
1748
+
1749
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mate_multipoint_avg_prob&lt;/strong&gt;</pre>
1750
+
1751
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1752
+
1753
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1754
+
1755
+ <p>&lt;p&gt;Returns the value of attribute mate_multipoint_avg_prob&lt;/p&gt;</p>
1756
+
1757
+ <pre>&lt;/div&gt;</pre>
1758
+
1759
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1760
+
1761
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1762
+
1763
+ <pre>&lt;tr&gt;
1764
+ &lt;td&gt;
1765
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1766
+
1767
+ <p>240 241 242&lt;/pre&gt;</p>
1768
+
1769
+ <pre>&lt;/td&gt;
1770
+ &lt;td&gt;
1771
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 240&lt;/span&gt;</pre>
1772
+
1773
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1774
+ identifier
1775
+ rubyid_mate_multipoint_avg_prob&#39;&gt;mate_multipoint_avg_prob&lt;/span&gt;</p>
1776
+
1777
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mate_multipoint_avg_prob&lt;/span&gt;</pre>
1778
+
1779
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1780
+
1781
+ <pre> &lt;/td&gt;
1782
+ &lt;/tr&gt;</pre>
1783
+
1784
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1785
+
1786
+ <pre> &lt;span id=&quot;mate_multipoint_prob=-instance_method&quot;&gt;&lt;/span&gt;
1787
+ &lt;div class=&quot;method_details &quot;&gt;
1788
+ &lt;h3 class=&quot;signature &quot; id=&quot;mate_multipoint_prob-instance_method&quot;&gt;
1789
+
1790
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mate_multipoint_prob&lt;/strong&gt;</pre>
1791
+
1792
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1793
+
1794
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1795
+
1796
+ <p>&lt;p&gt;Returns the value of attribute mate_multipoint_prob&lt;/p&gt;</p>
1797
+
1798
+ <pre>&lt;/div&gt;</pre>
1799
+
1800
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1801
+
1802
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1803
+
1804
+ <pre>&lt;tr&gt;
1805
+ &lt;td&gt;
1806
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1807
+
1808
+ <p>241 242 243&lt;/pre&gt;</p>
1809
+
1810
+ <pre>&lt;/td&gt;
1811
+ &lt;td&gt;
1812
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 241&lt;/span&gt;</pre>
1813
+
1814
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1815
+ identifier
1816
+ rubyid_mate_multipoint_prob&#39;&gt;mate_multipoint_prob&lt;/span&gt;</p>
1817
+
1818
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mate_multipoint_prob&lt;/span&gt;</pre>
1819
+
1820
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1821
+
1822
+ <pre> &lt;/td&gt;
1823
+ &lt;/tr&gt;</pre>
1824
+
1825
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1826
+
1827
+ <pre> &lt;span id=&quot;mate_only_prob=-instance_method&quot;&gt;&lt;/span&gt;
1828
+ &lt;div class=&quot;method_details &quot;&gt;
1829
+ &lt;h3 class=&quot;signature &quot; id=&quot;mate_only_prob-instance_method&quot;&gt;
1830
+
1831
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mate_only_prob&lt;/strong&gt;</pre>
1832
+
1833
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1834
+
1835
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1836
+
1837
+ <p>&lt;p&gt;Returns the value of attribute mate_only_prob&lt;/p&gt;</p>
1838
+
1839
+ <pre>&lt;/div&gt;</pre>
1840
+
1841
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1842
+
1843
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1844
+
1845
+ <pre>&lt;tr&gt;
1846
+ &lt;td&gt;
1847
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1848
+
1849
+ <p>242 243 244&lt;/pre&gt;</p>
1850
+
1851
+ <pre>&lt;/td&gt;
1852
+ &lt;td&gt;
1853
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 242&lt;/span&gt;</pre>
1854
+
1855
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1856
+ identifier rubyid_mate_only_prob&#39;&gt;mate_only_prob&lt;/span&gt;</p>
1857
+
1858
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mate_only_prob&lt;/span&gt;</pre>
1859
+
1860
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1861
+
1862
+ <pre> &lt;/td&gt;
1863
+ &lt;/tr&gt;</pre>
1864
+
1865
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1866
+
1867
+ <pre> &lt;span id=&quot;mate_singlepoint_prob=-instance_method&quot;&gt;&lt;/span&gt;
1868
+ &lt;div class=&quot;method_details &quot;&gt;
1869
+ &lt;h3 class=&quot;signature &quot; id=&quot;mate_singlepoint_prob-instance_method&quot;&gt;
1870
+
1871
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mate_singlepoint_prob&lt;/strong&gt;</pre>
1872
+
1873
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1874
+
1875
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1876
+
1877
+ <p>&lt;p&gt;Returns the value of attribute mate_singlepoint_prob&lt;/p&gt;</p>
1878
+
1879
+ <pre>&lt;/div&gt;</pre>
1880
+
1881
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1882
+
1883
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1884
+
1885
+ <pre>&lt;tr&gt;
1886
+ &lt;td&gt;
1887
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1888
+
1889
+ <p>243 244 245&lt;/pre&gt;</p>
1890
+
1891
+ <pre>&lt;/td&gt;
1892
+ &lt;td&gt;
1893
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 243&lt;/span&gt;</pre>
1894
+
1895
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1896
+ identifier
1897
+ rubyid_mate_singlepoint_prob&#39;&gt;mate_singlepoint_prob&lt;/span&gt;</p>
1898
+
1899
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mate_singlepoint_prob&lt;/span&gt;</pre>
1900
+
1901
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1902
+
1903
+ <pre> &lt;/td&gt;
1904
+ &lt;/tr&gt;</pre>
1905
+
1906
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1907
+
1908
+ <pre> &lt;span id=&quot;max_generations=-instance_method&quot;&gt;&lt;/span&gt;
1909
+ &lt;div class=&quot;method_details &quot;&gt;
1910
+ &lt;h3 class=&quot;signature &quot; id=&quot;max_generations-instance_method&quot;&gt;
1911
+
1912
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;max_generations&lt;/strong&gt;</pre>
1913
+
1914
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1915
+
1916
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1917
+
1918
+ <p>&lt;p&gt;Maximum number of generations to run, if given.&lt;/p&gt;</p>
1919
+
1920
+ <pre>&lt;/div&gt;</pre>
1921
+
1922
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1923
+
1924
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1925
+
1926
+ <pre>&lt;tr&gt;
1927
+ &lt;td&gt;
1928
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1929
+
1930
+ <p>246 247 248&lt;/pre&gt;</p>
1931
+
1932
+ <pre>&lt;/td&gt;
1933
+ &lt;td&gt;
1934
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 246&lt;/span&gt;</pre>
1935
+
1936
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1937
+ identifier rubyid_max_generations&#39;&gt;max_generations&lt;/span&gt;</p>
1938
+
1939
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@max_generations&lt;/span&gt;</pre>
1940
+
1941
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1942
+
1943
+ <pre> &lt;/td&gt;
1944
+ &lt;/tr&gt;</pre>
1945
+
1946
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1947
+
1948
+ <pre> &lt;span id=&quot;max_population_history=-instance_method&quot;&gt;&lt;/span&gt;
1949
+ &lt;div class=&quot;method_details &quot;&gt;
1950
+ &lt;h3 class=&quot;signature &quot; id=&quot;max_population_history-instance_method&quot;&gt;
1951
+
1952
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;max_population_history&lt;/strong&gt;</pre>
1953
+
1954
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1955
+
1956
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1957
+
1958
+ <p>&lt;p&gt;Maximun number of populations to maintain in the history
1959
+ buffer.&lt;/p&gt;</p>
1960
+
1961
+ <pre>&lt;/div&gt;</pre>
1962
+
1963
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
1964
+
1965
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
1966
+
1967
+ <pre>&lt;tr&gt;
1968
+ &lt;td&gt;
1969
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
1970
+
1971
+ <p>249 250 251&lt;/pre&gt;</p>
1972
+
1973
+ <pre>&lt;/td&gt;
1974
+ &lt;td&gt;
1975
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 249&lt;/span&gt;</pre>
1976
+
1977
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
1978
+ identifier
1979
+ rubyid_max_population_history&#39;&gt;max_population_history&lt;/span&gt;</p>
1980
+
1981
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@max_population_history&lt;/span&gt;</pre>
1982
+
1983
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
1984
+
1985
+ <pre> &lt;/td&gt;
1986
+ &lt;/tr&gt;</pre>
1987
+
1988
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
1989
+
1990
+ <pre> &lt;span id=&quot;max_species=-instance_method&quot;&gt;&lt;/span&gt;
1991
+ &lt;div class=&quot;method_details &quot;&gt;
1992
+ &lt;h3 class=&quot;signature &quot; id=&quot;max_species-instance_method&quot;&gt;
1993
+
1994
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;max_species&lt;/strong&gt;</pre>
1995
+
1996
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
1997
+
1998
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
1999
+
2000
+ <p>&lt;p&gt;Max target number of species (will result in the
2001
+ compatability_coeifficient being adjusted automatically&lt;/p&gt;</p>
2002
+
2003
+ <pre>&lt;/div&gt;</pre>
2004
+
2005
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2006
+
2007
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2008
+
2009
+ <pre>&lt;tr&gt;
2010
+ &lt;td&gt;
2011
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2012
+
2013
+ <p>228 229 230&lt;/pre&gt;</p>
2014
+
2015
+ <pre>&lt;/td&gt;
2016
+ &lt;td&gt;
2017
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 228&lt;/span&gt;</pre>
2018
+
2019
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2020
+ identifier rubyid_max_species&#39;&gt;max_species&lt;/span&gt;</p>
2021
+
2022
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@max_species&lt;/span&gt;</pre>
2023
+
2024
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2025
+
2026
+ <pre> &lt;/td&gt;
2027
+ &lt;/tr&gt;</pre>
2028
+
2029
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2030
+
2031
+ <pre> &lt;span id=&quot;mutate_add_gene_prob=-instance_method&quot;&gt;&lt;/span&gt;
2032
+ &lt;div class=&quot;method_details &quot;&gt;
2033
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_add_gene_prob-instance_method&quot;&gt;
2034
+
2035
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_add_gene_prob&lt;/strong&gt;</pre>
2036
+
2037
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2038
+
2039
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2040
+
2041
+ <p>&lt;p&gt;Returns the value of attribute mutate_add_gene_prob&lt;/p&gt;</p>
2042
+
2043
+ <pre>&lt;/div&gt;</pre>
2044
+
2045
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2046
+
2047
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2048
+
2049
+ <pre>&lt;tr&gt;
2050
+ &lt;td&gt;
2051
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2052
+
2053
+ <p>251 252 253&lt;/pre&gt;</p>
2054
+
2055
+ <pre>&lt;/td&gt;
2056
+ &lt;td&gt;
2057
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 251&lt;/span&gt;</pre>
2058
+
2059
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2060
+ identifier
2061
+ rubyid_mutate_add_gene_prob&#39;&gt;mutate_add_gene_prob&lt;/span&gt;</p>
2062
+
2063
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_add_gene_prob&lt;/span&gt;</pre>
2064
+
2065
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2066
+
2067
+ <pre> &lt;/td&gt;
2068
+ &lt;/tr&gt;</pre>
2069
+
2070
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2071
+
2072
+ <pre> &lt;span id=&quot;mutate_add_neuron_prob=-instance_method&quot;&gt;&lt;/span&gt;
2073
+ &lt;div class=&quot;method_details &quot;&gt;
2074
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_add_neuron_prob-instance_method&quot;&gt;
2075
+
2076
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_add_neuron_prob&lt;/strong&gt;</pre>
2077
+
2078
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2079
+
2080
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2081
+
2082
+ <p>&lt;p&gt;Returns the value of attribute mutate_add_neuron_prob&lt;/p&gt;</p>
2083
+
2084
+ <pre>&lt;/div&gt;</pre>
2085
+
2086
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2087
+
2088
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2089
+
2090
+ <pre>&lt;tr&gt;
2091
+ &lt;td&gt;
2092
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2093
+
2094
+ <p>252 253 254&lt;/pre&gt;</p>
2095
+
2096
+ <pre>&lt;/td&gt;
2097
+ &lt;td&gt;
2098
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 252&lt;/span&gt;</pre>
2099
+
2100
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2101
+ identifier
2102
+ rubyid_mutate_add_neuron_prob&#39;&gt;mutate_add_neuron_prob&lt;/span&gt;</p>
2103
+
2104
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_add_neuron_prob&lt;/span&gt;</pre>
2105
+
2106
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2107
+
2108
+ <pre> &lt;/td&gt;
2109
+ &lt;/tr&gt;</pre>
2110
+
2111
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2112
+
2113
+ <pre> &lt;span id=&quot;mutate_change_gene_weights_prob=-instance_method&quot;&gt;&lt;/span&gt;
2114
+ &lt;div class=&quot;method_details &quot;&gt;
2115
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_change_gene_weights_prob-instance_method&quot;&gt;
2116
+
2117
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_change_gene_weights_prob&lt;/strong&gt;</pre>
2118
+
2119
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2120
+
2121
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2122
+
2123
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
2124
+ overwrites)&lt;/p&gt;</p>
2125
+
2126
+ <pre>&lt;/div&gt;</pre>
2127
+
2128
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2129
+
2130
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2131
+
2132
+ <pre>&lt;tr&gt;
2133
+ &lt;td&gt;
2134
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2135
+
2136
+ <p>260 261 262&lt;/pre&gt;</p>
2137
+
2138
+ <pre>&lt;/td&gt;
2139
+ &lt;td&gt;
2140
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 260&lt;/span&gt;</pre>
2141
+
2142
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2143
+ identifier
2144
+ rubyid_mutate_change_gene_weights_prob&#39;&gt;mutate_change_gene_weights_prob&lt;/span&gt;</p>
2145
+
2146
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_change_gene_weights_prob&lt;/span&gt;</pre>
2147
+
2148
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2149
+
2150
+ <pre> &lt;/td&gt;
2151
+ &lt;/tr&gt;</pre>
2152
+
2153
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2154
+
2155
+ <pre> &lt;span id=&quot;mutate_change_gene_weights_sd=-instance_method&quot;&gt;&lt;/span&gt;
2156
+ &lt;div class=&quot;method_details &quot;&gt;
2157
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_change_gene_weights_sd-instance_method&quot;&gt;
2158
+
2159
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_change_gene_weights_sd&lt;/strong&gt;</pre>
2160
+
2161
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2162
+
2163
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2164
+
2165
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
2166
+ overwrites)&lt;/p&gt;</p>
2167
+
2168
+ <pre>&lt;/div&gt;</pre>
2169
+
2170
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2171
+
2172
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2173
+
2174
+ <pre>&lt;tr&gt;
2175
+ &lt;td&gt;
2176
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2177
+
2178
+ <p>260 261 262&lt;/pre&gt;</p>
2179
+
2180
+ <pre>&lt;/td&gt;
2181
+ &lt;td&gt;
2182
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 260&lt;/span&gt;</pre>
2183
+
2184
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2185
+ identifier
2186
+ rubyid_mutate_change_gene_weights_sd&#39;&gt;mutate_change_gene_weights_sd&lt;/span&gt;</p>
2187
+
2188
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_change_gene_weights_sd&lt;/span&gt;</pre>
2189
+
2190
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2191
+
2192
+ <pre> &lt;/td&gt;
2193
+ &lt;/tr&gt;</pre>
2194
+
2195
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2196
+
2197
+ <pre> &lt;span id=&quot;mutate_gene_disable_prob=-instance_method&quot;&gt;&lt;/span&gt;
2198
+ &lt;div class=&quot;method_details &quot;&gt;
2199
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_gene_disable_prob-instance_method&quot;&gt;
2200
+
2201
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_gene_disable_prob&lt;/strong&gt;</pre>
2202
+
2203
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2204
+
2205
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2206
+
2207
+ <p>&lt;p&gt;Returns the value of attribute mutate_gene_disable_prob&lt;/p&gt;</p>
2208
+
2209
+ <pre>&lt;/div&gt;</pre>
2210
+
2211
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2212
+
2213
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2214
+
2215
+ <pre>&lt;tr&gt;
2216
+ &lt;td&gt;
2217
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2218
+
2219
+ <p>254 255 256&lt;/pre&gt;</p>
2220
+
2221
+ <pre>&lt;/td&gt;
2222
+ &lt;td&gt;
2223
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 254&lt;/span&gt;</pre>
2224
+
2225
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2226
+ identifier
2227
+ rubyid_mutate_gene_disable_prob&#39;&gt;mutate_gene_disable_prob&lt;/span&gt;</p>
2228
+
2229
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_gene_disable_prob&lt;/span&gt;</pre>
2230
+
2231
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2232
+
2233
+ <pre> &lt;/td&gt;
2234
+ &lt;/tr&gt;</pre>
2235
+
2236
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2237
+
2238
+ <pre> &lt;span id=&quot;mutate_gene_reenable_prob=-instance_method&quot;&gt;&lt;/span&gt;
2239
+ &lt;div class=&quot;method_details &quot;&gt;
2240
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_gene_reenable_prob-instance_method&quot;&gt;
2241
+
2242
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_gene_reenable_prob&lt;/strong&gt;</pre>
2243
+
2244
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2245
+
2246
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2247
+
2248
+ <p>&lt;p&gt;Returns the value of attribute mutate_gene_reenable_prob&lt;/p&gt;</p>
2249
+
2250
+ <pre>&lt;/div&gt;</pre>
2251
+
2252
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2253
+
2254
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2255
+
2256
+ <pre>&lt;tr&gt;
2257
+ &lt;td&gt;
2258
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2259
+
2260
+ <p>255 256 257&lt;/pre&gt;</p>
2261
+
2262
+ <pre>&lt;/td&gt;
2263
+ &lt;td&gt;
2264
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 255&lt;/span&gt;</pre>
2265
+
2266
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2267
+ identifier
2268
+ rubyid_mutate_gene_reenable_prob&#39;&gt;mutate_gene_reenable_prob&lt;/span&gt;</p>
2269
+
2270
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_gene_reenable_prob&lt;/span&gt;</pre>
2271
+
2272
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2273
+
2274
+ <pre> &lt;/td&gt;
2275
+ &lt;/tr&gt;</pre>
2276
+
2277
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2278
+
2279
+ <pre> &lt;span id=&quot;mutate_gene_trait_prob=-instance_method&quot;&gt;&lt;/span&gt;
2280
+ &lt;div class=&quot;method_details &quot;&gt;
2281
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_gene_trait_prob-instance_method&quot;&gt;
2282
+
2283
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_gene_trait_prob&lt;/strong&gt;</pre>
2284
+
2285
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2286
+
2287
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2288
+
2289
+ <p>&lt;p&gt;Returns the value of attribute mutate_gene_trait_prob&lt;/p&gt;</p>
2290
+
2291
+ <pre>&lt;/div&gt;</pre>
2292
+
2293
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2294
+
2295
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2296
+
2297
+ <pre>&lt;tr&gt;
2298
+ &lt;td&gt;
2299
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2300
+
2301
+ <p>257 258 259&lt;/pre&gt;</p>
2302
+
2303
+ <pre>&lt;/td&gt;
2304
+ &lt;td&gt;
2305
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 257&lt;/span&gt;</pre>
2306
+
2307
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2308
+ identifier
2309
+ rubyid_mutate_gene_trait_prob&#39;&gt;mutate_gene_trait_prob&lt;/span&gt;</p>
2310
+
2311
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_gene_trait_prob&lt;/span&gt;</pre>
2312
+
2313
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2314
+
2315
+ <pre> &lt;/td&gt;
2316
+ &lt;/tr&gt;</pre>
2317
+
2318
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2319
+
2320
+ <pre> &lt;span id=&quot;mutate_neuron_trait_prob=-instance_method&quot;&gt;&lt;/span&gt;
2321
+ &lt;div class=&quot;method_details &quot;&gt;
2322
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_neuron_trait_prob-instance_method&quot;&gt;
2323
+
2324
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_neuron_trait_prob&lt;/strong&gt;</pre>
2325
+
2326
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2327
+
2328
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2329
+
2330
+ <p>&lt;p&gt;Returns the value of attribute mutate_neuron_trait_prob&lt;/p&gt;</p>
2331
+
2332
+ <pre>&lt;/div&gt;</pre>
2333
+
2334
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2335
+
2336
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2337
+
2338
+ <pre>&lt;tr&gt;
2339
+ &lt;td&gt;
2340
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2341
+
2342
+ <p>265 266 267&lt;/pre&gt;</p>
2343
+
2344
+ <pre>&lt;/td&gt;
2345
+ &lt;td&gt;
2346
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 265&lt;/span&gt;</pre>
2347
+
2348
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2349
+ identifier
2350
+ rubyid_mutate_neuron_trait_prob&#39;&gt;mutate_neuron_trait_prob&lt;/span&gt;</p>
2351
+
2352
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_neuron_trait_prob&lt;/span&gt;</pre>
2353
+
2354
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2355
+
2356
+ <pre> &lt;/td&gt;
2357
+ &lt;/tr&gt;</pre>
2358
+
2359
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2360
+
2361
+ <pre> &lt;span id=&quot;mutate_only_prob=-instance_method&quot;&gt;&lt;/span&gt;
2362
+ &lt;div class=&quot;method_details &quot;&gt;
2363
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_only_prob-instance_method&quot;&gt;
2364
+
2365
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_only_prob&lt;/strong&gt;</pre>
2366
+
2367
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2368
+
2369
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2370
+
2371
+ <p>&lt;p&gt;Returns the value of attribute mutate_only_prob&lt;/p&gt;</p>
2372
+
2373
+ <pre>&lt;/div&gt;</pre>
2374
+
2375
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2376
+
2377
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2378
+
2379
+ <pre>&lt;tr&gt;
2380
+ &lt;td&gt;
2381
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2382
+
2383
+ <p>266 267 268&lt;/pre&gt;</p>
2384
+
2385
+ <pre>&lt;/td&gt;
2386
+ &lt;td&gt;
2387
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 266&lt;/span&gt;</pre>
2388
+
2389
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2390
+ identifier rubyid_mutate_only_prob&#39;&gt;mutate_only_prob&lt;/span&gt;</p>
2391
+
2392
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_only_prob&lt;/span&gt;</pre>
2393
+
2394
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2395
+
2396
+ <pre> &lt;/td&gt;
2397
+ &lt;/tr&gt;</pre>
2398
+
2399
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2400
+
2401
+ <pre> &lt;span id=&quot;mutate_perturb_gene_weights_prob=-instance_method&quot;&gt;&lt;/span&gt;
2402
+ &lt;div class=&quot;method_details &quot;&gt;
2403
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_perturb_gene_weights_prob-instance_method&quot;&gt;
2404
+
2405
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_perturb_gene_weights_prob&lt;/strong&gt;</pre>
2406
+
2407
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2408
+
2409
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2410
+
2411
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
2412
+ overwrites)&lt;/p&gt;</p>
2413
+
2414
+ <pre>&lt;/div&gt;</pre>
2415
+
2416
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2417
+
2418
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2419
+
2420
+ <pre>&lt;tr&gt;
2421
+ &lt;td&gt;
2422
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2423
+
2424
+ <p>260 261 262&lt;/pre&gt;</p>
2425
+
2426
+ <pre>&lt;/td&gt;
2427
+ &lt;td&gt;
2428
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 260&lt;/span&gt;</pre>
2429
+
2430
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2431
+ identifier
2432
+ rubyid_mutate_perturb_gene_weights_prob&#39;&gt;mutate_perturb_gene_weights_prob&lt;/span&gt;</p>
2433
+
2434
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_perturb_gene_weights_prob&lt;/span&gt;</pre>
2435
+
2436
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2437
+
2438
+ <pre> &lt;/td&gt;
2439
+ &lt;/tr&gt;</pre>
2440
+
2441
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2442
+
2443
+ <pre> &lt;span id=&quot;mutate_perturb_gene_weights_sd=-instance_method&quot;&gt;&lt;/span&gt;
2444
+ &lt;div class=&quot;method_details &quot;&gt;
2445
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_perturb_gene_weights_sd-instance_method&quot;&gt;
2446
+
2447
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_perturb_gene_weights_sd&lt;/strong&gt;</pre>
2448
+
2449
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2450
+
2451
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2452
+
2453
+ <p>&lt;p&gt;For gene weights perturbations and changes (complete
2454
+ overwrites)&lt;/p&gt;</p>
2455
+
2456
+ <pre>&lt;/div&gt;</pre>
2457
+
2458
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2459
+
2460
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2461
+
2462
+ <pre>&lt;tr&gt;
2463
+ &lt;td&gt;
2464
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2465
+
2466
+ <p>260 261 262&lt;/pre&gt;</p>
2467
+
2468
+ <pre>&lt;/td&gt;
2469
+ &lt;td&gt;
2470
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 260&lt;/span&gt;</pre>
2471
+
2472
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2473
+ identifier
2474
+ rubyid_mutate_perturb_gene_weights_sd&#39;&gt;mutate_perturb_gene_weights_sd&lt;/span&gt;</p>
2475
+
2476
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_perturb_gene_weights_sd&lt;/span&gt;</pre>
2477
+
2478
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2479
+
2480
+ <pre> &lt;/td&gt;
2481
+ &lt;/tr&gt;</pre>
2482
+
2483
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2484
+
2485
+ <pre> &lt;span id=&quot;mutate_random_trait_prob=-instance_method&quot;&gt;&lt;/span&gt;
2486
+ &lt;div class=&quot;method_details &quot;&gt;
2487
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_random_trait_prob-instance_method&quot;&gt;
2488
+
2489
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_random_trait_prob&lt;/strong&gt;</pre>
2490
+
2491
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2492
+
2493
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2494
+
2495
+ <p>&lt;p&gt;Returns the value of attribute mutate_random_trait_prob&lt;/p&gt;</p>
2496
+
2497
+ <pre>&lt;/div&gt;</pre>
2498
+
2499
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2500
+
2501
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2502
+
2503
+ <pre>&lt;tr&gt;
2504
+ &lt;td&gt;
2505
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2506
+
2507
+ <p>267 268 269&lt;/pre&gt;</p>
2508
+
2509
+ <pre>&lt;/td&gt;
2510
+ &lt;td&gt;
2511
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 267&lt;/span&gt;</pre>
2512
+
2513
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2514
+ identifier
2515
+ rubyid_mutate_random_trait_prob&#39;&gt;mutate_random_trait_prob&lt;/span&gt;</p>
2516
+
2517
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_random_trait_prob&lt;/span&gt;</pre>
2518
+
2519
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2520
+
2521
+ <pre> &lt;/td&gt;
2522
+ &lt;/tr&gt;</pre>
2523
+
2524
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2525
+
2526
+ <pre> &lt;span id=&quot;mutate_toggle_enable_prob=-instance_method&quot;&gt;&lt;/span&gt;
2527
+ &lt;div class=&quot;method_details &quot;&gt;
2528
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutate_toggle_enable_prob-instance_method&quot;&gt;
2529
+
2530
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutate_toggle_enable_prob&lt;/strong&gt;</pre>
2531
+
2532
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2533
+
2534
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2535
+
2536
+ <p>&lt;p&gt;Returns the value of attribute mutate_toggle_enable_prob&lt;/p&gt;</p>
2537
+
2538
+ <pre>&lt;/div&gt;</pre>
2539
+
2540
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2541
+
2542
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2543
+
2544
+ <pre>&lt;tr&gt;
2545
+ &lt;td&gt;
2546
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2547
+
2548
+ <p>268 269 270&lt;/pre&gt;</p>
2549
+
2550
+ <pre>&lt;/td&gt;
2551
+ &lt;td&gt;
2552
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 268&lt;/span&gt;</pre>
2553
+
2554
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2555
+ identifier
2556
+ rubyid_mutate_toggle_enable_prob&#39;&gt;mutate_toggle_enable_prob&lt;/span&gt;</p>
2557
+
2558
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutate_toggle_enable_prob&lt;/span&gt;</pre>
2559
+
2560
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2561
+
2562
+ <pre> &lt;/td&gt;
2563
+ &lt;/tr&gt;</pre>
2564
+
2565
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2566
+
2567
+ <pre> &lt;span id=&quot;mutdiff_coefficient=-instance_method&quot;&gt;&lt;/span&gt;
2568
+ &lt;div class=&quot;method_details &quot;&gt;
2569
+ &lt;h3 class=&quot;signature &quot; id=&quot;mutdiff_coefficient-instance_method&quot;&gt;
2570
+
2571
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;mutdiff_coefficient&lt;/strong&gt;</pre>
2572
+
2573
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2574
+
2575
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2576
+
2577
+ <p>&lt;p&gt;Returns the value of attribute mutdiff_coefficient&lt;/p&gt;</p>
2578
+
2579
+ <pre>&lt;/div&gt;</pre>
2580
+
2581
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2582
+
2583
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2584
+
2585
+ <pre>&lt;tr&gt;
2586
+ &lt;td&gt;
2587
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2588
+
2589
+ <p>269 270 271&lt;/pre&gt;</p>
2590
+
2591
+ <pre>&lt;/td&gt;
2592
+ &lt;td&gt;
2593
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 269&lt;/span&gt;</pre>
2594
+
2595
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2596
+ identifier
2597
+ rubyid_mutdiff_coefficient&#39;&gt;mutdiff_coefficient&lt;/span&gt;</p>
2598
+
2599
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@mutdiff_coefficient&lt;/span&gt;</pre>
2600
+
2601
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2602
+
2603
+ <pre> &lt;/td&gt;
2604
+ &lt;/tr&gt;</pre>
2605
+
2606
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2607
+
2608
+ <pre> &lt;span id=&quot;neuron_trait_mut_sig=-instance_method&quot;&gt;&lt;/span&gt;
2609
+ &lt;div class=&quot;method_details &quot;&gt;
2610
+ &lt;h3 class=&quot;signature &quot; id=&quot;neuron_trait_mut_sig-instance_method&quot;&gt;
2611
+
2612
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;neuron_trait_mut_sig&lt;/strong&gt;</pre>
2613
+
2614
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2615
+
2616
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2617
+
2618
+ <p>&lt;p&gt;Returns the value of attribute neuron_trait_mut_sig&lt;/p&gt;</p>
2619
+
2620
+ <pre>&lt;/div&gt;</pre>
2621
+
2622
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2623
+
2624
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2625
+
2626
+ <pre>&lt;tr&gt;
2627
+ &lt;td&gt;
2628
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2629
+
2630
+ <p>271 272 273&lt;/pre&gt;</p>
2631
+
2632
+ <pre>&lt;/td&gt;
2633
+ &lt;td&gt;
2634
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 271&lt;/span&gt;</pre>
2635
+
2636
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2637
+ identifier
2638
+ rubyid_neuron_trait_mut_sig&#39;&gt;neuron_trait_mut_sig&lt;/span&gt;</p>
2639
+
2640
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@neuron_trait_mut_sig&lt;/span&gt;</pre>
2641
+
2642
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2643
+
2644
+ <pre> &lt;/td&gt;
2645
+ &lt;/tr&gt;</pre>
2646
+
2647
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2648
+
2649
+ <pre> &lt;span id=&quot;newlink_tries=-instance_method&quot;&gt;&lt;/span&gt;
2650
+ &lt;div class=&quot;method_details &quot;&gt;
2651
+ &lt;h3 class=&quot;signature &quot; id=&quot;newlink_tries-instance_method&quot;&gt;
2652
+
2653
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;newlink_tries&lt;/strong&gt;</pre>
2654
+
2655
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2656
+
2657
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2658
+
2659
+ <p>&lt;p&gt;Returns the value of attribute newlink_tries&lt;/p&gt;</p>
2660
+
2661
+ <pre>&lt;/div&gt;</pre>
2662
+
2663
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2664
+
2665
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2666
+
2667
+ <pre>&lt;tr&gt;
2668
+ &lt;td&gt;
2669
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2670
+
2671
+ <p>270 271 272&lt;/pre&gt;</p>
2672
+
2673
+ <pre>&lt;/td&gt;
2674
+ &lt;td&gt;
2675
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 270&lt;/span&gt;</pre>
2676
+
2677
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2678
+ identifier rubyid_newlink_tries&#39;&gt;newlink_tries&lt;/span&gt;</p>
2679
+
2680
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@newlink_tries&lt;/span&gt;</pre>
2681
+
2682
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2683
+
2684
+ <pre> &lt;/td&gt;
2685
+ &lt;/tr&gt;</pre>
2686
+
2687
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2688
+
2689
+ <pre> &lt;span id=&quot;population_size=-instance_method&quot;&gt;&lt;/span&gt;
2690
+ &lt;div class=&quot;method_details &quot;&gt;
2691
+ &lt;h3 class=&quot;signature &quot; id=&quot;population_size-instance_method&quot;&gt;
2692
+
2693
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;population_size&lt;/strong&gt;</pre>
2694
+
2695
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2696
+
2697
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2698
+
2699
+ <p>&lt;p&gt;If set, will start off at the specified size and grow to the
2700
+ bigger population size&lt;/p&gt;</p>
2701
+
2702
+ <pre>&lt;/div&gt;</pre>
2703
+
2704
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2705
+
2706
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2707
+
2708
+ <pre>&lt;tr&gt;
2709
+ &lt;td&gt;
2710
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2711
+
2712
+ <p>281 282 283&lt;/pre&gt;</p>
2713
+
2714
+ <pre>&lt;/td&gt;
2715
+ &lt;td&gt;
2716
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 281&lt;/span&gt;</pre>
2717
+
2718
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2719
+ identifier rubyid_population_size&#39;&gt;population_size&lt;/span&gt;</p>
2720
+
2721
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@population_size&lt;/span&gt;</pre>
2722
+
2723
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2724
+
2725
+ <pre> &lt;/td&gt;
2726
+ &lt;/tr&gt;</pre>
2727
+
2728
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2729
+
2730
+ <pre> &lt;span id=&quot;print_every=-instance_method&quot;&gt;&lt;/span&gt;
2731
+ &lt;div class=&quot;method_details &quot;&gt;
2732
+ &lt;h3 class=&quot;signature &quot; id=&quot;print_every-instance_method&quot;&gt;
2733
+
2734
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;print_every&lt;/strong&gt;</pre>
2735
+
2736
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2737
+
2738
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2739
+
2740
+ <p>&lt;p&gt;Returns the value of attribute print_every&lt;/p&gt;</p>
2741
+
2742
+ <pre>&lt;/div&gt;</pre>
2743
+
2744
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2745
+
2746
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2747
+
2748
+ <pre>&lt;tr&gt;
2749
+ &lt;td&gt;
2750
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2751
+
2752
+ <p>285 286 287&lt;/pre&gt;</p>
2753
+
2754
+ <pre>&lt;/td&gt;
2755
+ &lt;td&gt;
2756
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 285&lt;/span&gt;</pre>
2757
+
2758
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2759
+ identifier rubyid_print_every&#39;&gt;print_every&lt;/span&gt;</p>
2760
+
2761
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@print_every&lt;/span&gt;</pre>
2762
+
2763
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2764
+
2765
+ <pre> &lt;/td&gt;
2766
+ &lt;/tr&gt;</pre>
2767
+
2768
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2769
+
2770
+ <pre> &lt;span id=&quot;real_time_switch=-instance_method&quot;&gt;&lt;/span&gt;
2771
+ &lt;div class=&quot;method_details &quot;&gt;
2772
+ &lt;h3 class=&quot;signature &quot; id=&quot;real_time_switch-instance_method&quot;&gt;
2773
+
2774
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;real_time_switch&lt;/strong&gt;</pre>
2775
+
2776
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2777
+
2778
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2779
+
2780
+ <p>&lt;p&gt;Enable RT-NEAT, for gradual evolution suitable for games and other
2781
+ human-interactive systems.&lt;/p&gt;</p>
2782
+
2783
+ <pre>&lt;/div&gt;</pre>
2784
+
2785
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2786
+
2787
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2788
+
2789
+ <pre>&lt;tr&gt;
2790
+ &lt;td&gt;
2791
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2792
+
2793
+ <p>312 313 314&lt;/pre&gt;</p>
2794
+
2795
+ <pre>&lt;/td&gt;
2796
+ &lt;td&gt;
2797
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 312&lt;/span&gt;</pre>
2798
+
2799
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2800
+ identifier rubyid_real_time_switch&#39;&gt;real_time_switch&lt;/span&gt;</p>
2801
+
2802
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@real_time_switch&lt;/span&gt;</pre>
2803
+
2804
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2805
+
2806
+ <pre> &lt;/td&gt;
2807
+ &lt;/tr&gt;</pre>
2808
+
2809
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2810
+
2811
+ <pre> &lt;span id=&quot;recur_only_prob=-instance_method&quot;&gt;&lt;/span&gt;
2812
+ &lt;div class=&quot;method_details &quot;&gt;
2813
+ &lt;h3 class=&quot;signature &quot; id=&quot;recur_only_prob-instance_method&quot;&gt;
2814
+
2815
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;recur_only_prob&lt;/strong&gt;</pre>
2816
+
2817
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2818
+
2819
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2820
+
2821
+ <p>&lt;p&gt;Returns the value of attribute recur_only_prob&lt;/p&gt;</p>
2822
+
2823
+ <pre>&lt;/div&gt;</pre>
2824
+
2825
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2826
+
2827
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2828
+
2829
+ <pre>&lt;tr&gt;
2830
+ &lt;td&gt;
2831
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2832
+
2833
+ <p>286 287 288&lt;/pre&gt;</p>
2834
+
2835
+ <pre>&lt;/td&gt;
2836
+ &lt;td&gt;
2837
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 286&lt;/span&gt;</pre>
2838
+
2839
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2840
+ identifier rubyid_recur_only_prob&#39;&gt;recur_only_prob&lt;/span&gt;</p>
2841
+
2842
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@recur_only_prob&lt;/span&gt;</pre>
2843
+
2844
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2845
+
2846
+ <pre> &lt;/td&gt;
2847
+ &lt;/tr&gt;</pre>
2848
+
2849
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2850
+
2851
+ <pre> &lt;span id=&quot;recur_prob=-instance_method&quot;&gt;&lt;/span&gt;
2852
+ &lt;div class=&quot;method_details &quot;&gt;
2853
+ &lt;h3 class=&quot;signature &quot; id=&quot;recur_prob-instance_method&quot;&gt;
2854
+
2855
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;recur_prob&lt;/strong&gt;</pre>
2856
+
2857
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2858
+
2859
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2860
+
2861
+ <p>&lt;p&gt;Returns the value of attribute recur_prob&lt;/p&gt;</p>
2862
+
2863
+ <pre>&lt;/div&gt;</pre>
2864
+
2865
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2866
+
2867
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2868
+
2869
+ <pre>&lt;tr&gt;
2870
+ &lt;td&gt;
2871
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2872
+
2873
+ <p>287 288 289&lt;/pre&gt;</p>
2874
+
2875
+ <pre>&lt;/td&gt;
2876
+ &lt;td&gt;
2877
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 287&lt;/span&gt;</pre>
2878
+
2879
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2880
+ identifier rubyid_recur_prob&#39;&gt;recur_prob&lt;/span&gt;</p>
2881
+
2882
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@recur_prob&lt;/span&gt;</pre>
2883
+
2884
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2885
+
2886
+ <pre> &lt;/td&gt;
2887
+ &lt;/tr&gt;</pre>
2888
+
2889
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2890
+
2891
+ <pre> &lt;span id=&quot;recurrency_switch=-instance_method&quot;&gt;&lt;/span&gt;
2892
+ &lt;div class=&quot;method_details &quot;&gt;
2893
+ &lt;h3 class=&quot;signature &quot; id=&quot;recurrency_switch-instance_method&quot;&gt;
2894
+
2895
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;recurrency_switch&lt;/strong&gt;</pre>
2896
+
2897
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2898
+
2899
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2900
+
2901
+ <p>&lt;p&gt;If true, allow for recurrent networks.&lt;/p&gt;</p>
2902
+
2903
+ <pre>&lt;/div&gt;</pre>
2904
+
2905
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2906
+
2907
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2908
+
2909
+ <pre>&lt;tr&gt;
2910
+ &lt;td&gt;
2911
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2912
+
2913
+ <p>315 316 317&lt;/pre&gt;</p>
2914
+
2915
+ <pre>&lt;/td&gt;
2916
+ &lt;td&gt;
2917
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 315&lt;/span&gt;</pre>
2918
+
2919
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2920
+ identifier rubyid_recurrency_switch&#39;&gt;recurrency_switch&lt;/span&gt;</p>
2921
+
2922
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@recurrency_switch&lt;/span&gt;</pre>
2923
+
2924
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2925
+
2926
+ <pre> &lt;/td&gt;
2927
+ &lt;/tr&gt;</pre>
2928
+
2929
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2930
+
2931
+ <pre> &lt;span id=&quot;smallest_species=-instance_method&quot;&gt;&lt;/span&gt;
2932
+ &lt;div class=&quot;method_details &quot;&gt;
2933
+ &lt;h3 class=&quot;signature &quot; id=&quot;smallest_species-instance_method&quot;&gt;
2934
+
2935
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;smallest_species&lt;/strong&gt;</pre>
2936
+
2937
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2938
+
2939
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2940
+
2941
+ <p>&lt;p&gt;Species smallest population allowed (coalse smaller species into
2942
+ one)&lt;/p&gt;</p>
2943
+
2944
+ <pre>&lt;/div&gt;</pre>
2945
+
2946
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2947
+
2948
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2949
+
2950
+ <pre>&lt;tr&gt;
2951
+ &lt;td&gt;
2952
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2953
+
2954
+ <p>234 235 236&lt;/pre&gt;</p>
2955
+
2956
+ <pre>&lt;/td&gt;
2957
+ &lt;td&gt;
2958
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 234&lt;/span&gt;</pre>
2959
+
2960
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
2961
+ identifier rubyid_smallest_species&#39;&gt;smallest_species&lt;/span&gt;</p>
2962
+
2963
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@smallest_species&lt;/span&gt;</pre>
2964
+
2965
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
2966
+
2967
+ <pre> &lt;/td&gt;
2968
+ &lt;/tr&gt;</pre>
2969
+
2970
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
2971
+
2972
+ <pre> &lt;span id=&quot;start_population_size=-instance_method&quot;&gt;&lt;/span&gt;
2973
+ &lt;div class=&quot;method_details &quot;&gt;
2974
+ &lt;h3 class=&quot;signature &quot; id=&quot;start_population_size-instance_method&quot;&gt;
2975
+
2976
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;start_population_size&lt;/strong&gt;</pre>
2977
+
2978
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
2979
+
2980
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
2981
+
2982
+ <p>&lt;p&gt;If set, will start off at the specified size and grow to the
2983
+ bigger population size&lt;/p&gt;</p>
2984
+
2985
+ <pre>&lt;/div&gt;</pre>
2986
+
2987
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
2988
+
2989
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
2990
+
2991
+ <pre>&lt;tr&gt;
2992
+ &lt;td&gt;
2993
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
2994
+
2995
+ <p>281 282 283&lt;/pre&gt;</p>
2996
+
2997
+ <pre>&lt;/td&gt;
2998
+ &lt;td&gt;
2999
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 281&lt;/span&gt;</pre>
3000
+
3001
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3002
+ identifier
3003
+ rubyid_start_population_size&#39;&gt;start_population_size&lt;/span&gt;</p>
3004
+
3005
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@start_population_size&lt;/span&gt;</pre>
3006
+
3007
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3008
+
3009
+ <pre> &lt;/td&gt;
3010
+ &lt;/tr&gt;</pre>
3011
+
3012
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3013
+
3014
+ <pre> &lt;span id=&quot;start_sequence_at=-instance_method&quot;&gt;&lt;/span&gt;
3015
+ &lt;div class=&quot;method_details &quot;&gt;
3016
+ &lt;h3 class=&quot;signature &quot; id=&quot;start_sequence_at-instance_method&quot;&gt;
3017
+
3018
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;start_sequence_at&lt;/strong&gt;</pre>
3019
+
3020
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3021
+
3022
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3023
+
3024
+ <p>&lt;p&gt;Returns the value of attribute start_sequence_at&lt;/p&gt;</p>
3025
+
3026
+ <pre>&lt;/div&gt;</pre>
3027
+
3028
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3029
+
3030
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3031
+
3032
+ <pre>&lt;tr&gt;
3033
+ &lt;td&gt;
3034
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3035
+
3036
+ <p>283 284 285&lt;/pre&gt;</p>
3037
+
3038
+ <pre>&lt;/td&gt;
3039
+ &lt;td&gt;
3040
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 283&lt;/span&gt;</pre>
3041
+
3042
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3043
+ identifier rubyid_start_sequence_at&#39;&gt;start_sequence_at&lt;/span&gt;</p>
3044
+
3045
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@start_sequence_at&lt;/span&gt;</pre>
3046
+
3047
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3048
+
3049
+ <pre> &lt;/td&gt;
3050
+ &lt;/tr&gt;</pre>
3051
+
3052
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3053
+
3054
+ <pre> &lt;span id=&quot;survival_mininum_per_species=-instance_method&quot;&gt;&lt;/span&gt;
3055
+ &lt;div class=&quot;method_details &quot;&gt;
3056
+ &lt;h3 class=&quot;signature &quot; id=&quot;survival_mininum_per_species-instance_method&quot;&gt;
3057
+
3058
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;survival_mininum_per_species&lt;/strong&gt;</pre>
3059
+
3060
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3061
+
3062
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3063
+
3064
+ <p>&lt;p&gt;Returns the value of attribute
3065
+ survival_mininum_per_species&lt;/p&gt;</p>
3066
+
3067
+ <pre>&lt;/div&gt;</pre>
3068
+
3069
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3070
+
3071
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3072
+
3073
+ <pre>&lt;tr&gt;
3074
+ &lt;td&gt;
3075
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3076
+
3077
+ <p>292 293 294&lt;/pre&gt;</p>
3078
+
3079
+ <pre>&lt;/td&gt;
3080
+ &lt;td&gt;
3081
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 292&lt;/span&gt;</pre>
3082
+
3083
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3084
+ identifier
3085
+ rubyid_survival_mininum_per_species&#39;&gt;survival_mininum_per_species&lt;/span&gt;</p>
3086
+
3087
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@survival_mininum_per_species&lt;/span&gt;</pre>
3088
+
3089
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3090
+
3091
+ <pre> &lt;/td&gt;
3092
+ &lt;/tr&gt;</pre>
3093
+
3094
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3095
+
3096
+ <pre> &lt;span id=&quot;survival_threshold=-instance_method&quot;&gt;&lt;/span&gt;
3097
+ &lt;div class=&quot;method_details &quot;&gt;
3098
+ &lt;h3 class=&quot;signature &quot; id=&quot;survival_threshold-instance_method&quot;&gt;
3099
+
3100
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;survival_threshold&lt;/strong&gt;</pre>
3101
+
3102
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3103
+
3104
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3105
+
3106
+ <p>&lt;p&gt;factor (0 to 1) of the top percentage of the species
3107
+ that&amp;#39;s allowed to mate.&lt;/p&gt;</p>
3108
+
3109
+ <pre>&lt;/div&gt;</pre>
3110
+
3111
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3112
+
3113
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3114
+
3115
+ <pre>&lt;tr&gt;
3116
+ &lt;td&gt;
3117
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3118
+
3119
+ <p>291 292 293&lt;/pre&gt;</p>
3120
+
3121
+ <pre>&lt;/td&gt;
3122
+ &lt;td&gt;
3123
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 291&lt;/span&gt;</pre>
3124
+
3125
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3126
+ identifier
3127
+ rubyid_survival_threshold&#39;&gt;survival_threshold&lt;/span&gt;</p>
3128
+
3129
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@survival_threshold&lt;/span&gt;</pre>
3130
+
3131
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3132
+
3133
+ <pre> &lt;/td&gt;
3134
+ &lt;/tr&gt;</pre>
3135
+
3136
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3137
+
3138
+ <pre> &lt;span id=&quot;trait_mutation_power=-instance_method&quot;&gt;&lt;/span&gt;
3139
+ &lt;div class=&quot;method_details &quot;&gt;
3140
+ &lt;h3 class=&quot;signature &quot; id=&quot;trait_mutation_power-instance_method&quot;&gt;
3141
+
3142
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;trait_mutation_power&lt;/strong&gt;</pre>
3143
+
3144
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3145
+
3146
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3147
+
3148
+ <p>&lt;p&gt;Returns the value of attribute trait_mutation_power&lt;/p&gt;</p>
3149
+
3150
+ <pre>&lt;/div&gt;</pre>
3151
+
3152
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3153
+
3154
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3155
+
3156
+ <pre>&lt;tr&gt;
3157
+ &lt;td&gt;
3158
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3159
+
3160
+ <p>294 295 296&lt;/pre&gt;</p>
3161
+
3162
+ <pre>&lt;/td&gt;
3163
+ &lt;td&gt;
3164
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 294&lt;/span&gt;</pre>
3165
+
3166
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3167
+ identifier
3168
+ rubyid_trait_mutation_power&#39;&gt;trait_mutation_power&lt;/span&gt;</p>
3169
+
3170
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@trait_mutation_power&lt;/span&gt;</pre>
3171
+
3172
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3173
+
3174
+ <pre> &lt;/td&gt;
3175
+ &lt;/tr&gt;</pre>
3176
+
3177
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3178
+
3179
+ <pre> &lt;span id=&quot;trait_param_mut_prob=-instance_method&quot;&gt;&lt;/span&gt;
3180
+ &lt;div class=&quot;method_details &quot;&gt;
3181
+ &lt;h3 class=&quot;signature &quot; id=&quot;trait_param_mut_prob-instance_method&quot;&gt;
3182
+
3183
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;trait_param_mut_prob&lt;/strong&gt;</pre>
3184
+
3185
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3186
+
3187
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3188
+
3189
+ <p>&lt;p&gt;Returns the value of attribute trait_param_mut_prob&lt;/p&gt;</p>
3190
+
3191
+ <pre>&lt;/div&gt;</pre>
3192
+
3193
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3194
+
3195
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3196
+
3197
+ <pre>&lt;tr&gt;
3198
+ &lt;td&gt;
3199
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3200
+
3201
+ <p>295 296 297&lt;/pre&gt;</p>
3202
+
3203
+ <pre>&lt;/td&gt;
3204
+ &lt;td&gt;
3205
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 295&lt;/span&gt;</pre>
3206
+
3207
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3208
+ identifier
3209
+ rubyid_trait_param_mut_prob&#39;&gt;trait_param_mut_prob&lt;/span&gt;</p>
3210
+
3211
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@trait_param_mut_prob&lt;/span&gt;</pre>
3212
+
3213
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3214
+
3215
+ <pre> &lt;/td&gt;
3216
+ &lt;/tr&gt;</pre>
3217
+
3218
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3219
+
3220
+ <pre> &lt;span id=&quot;weigh_mut_power=-instance_method&quot;&gt;&lt;/span&gt;
3221
+ &lt;div class=&quot;method_details &quot;&gt;
3222
+ &lt;h3 class=&quot;signature &quot; id=&quot;weigh_mut_power-instance_method&quot;&gt;
3223
+
3224
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;weigh_mut_power&lt;/strong&gt;</pre>
3225
+
3226
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3227
+
3228
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3229
+
3230
+ <p>&lt;p&gt;Returns the value of attribute weigh_mut_power&lt;/p&gt;</p>
3231
+
3232
+ <pre>&lt;/div&gt;</pre>
3233
+
3234
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3235
+
3236
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3237
+
3238
+ <pre>&lt;tr&gt;
3239
+ &lt;td&gt;
3240
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3241
+
3242
+ <p>296 297 298&lt;/pre&gt;</p>
3243
+
3244
+ <pre>&lt;/td&gt;
3245
+ &lt;td&gt;
3246
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 296&lt;/span&gt;</pre>
3247
+
3248
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3249
+ identifier rubyid_weigh_mut_power&#39;&gt;weigh_mut_power&lt;/span&gt;</p>
3250
+
3251
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@weigh_mut_power&lt;/span&gt;</pre>
3252
+
3253
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3254
+
3255
+ <pre> &lt;/td&gt;
3256
+ &lt;/tr&gt;</pre>
3257
+
3258
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3259
+
3260
+ <pre> &lt;span id=&quot;weight_coefficient=-instance_method&quot;&gt;&lt;/span&gt;
3261
+ &lt;div class=&quot;method_details &quot;&gt;
3262
+ &lt;h3 class=&quot;signature &quot; id=&quot;weight_coefficient-instance_method&quot;&gt;
3263
+
3264
+ - (&lt;tt&gt;Object&lt;/tt&gt;) &lt;strong&gt;weight_coefficient&lt;/strong&gt;</pre>
3265
+
3266
+ <p>&lt;/h3&gt;&lt;div class=“docstring”&gt;</p>
3267
+
3268
+ <pre>&lt;div class=&quot;discussion&quot;&gt;</pre>
3269
+
3270
+ <p>&lt;p&gt;Speciation coffficient&lt;/p&gt;</p>
3271
+
3272
+ <pre>&lt;/div&gt;</pre>
3273
+
3274
+ <p>&lt;/div&gt; &lt;div class=“tags”&gt;</p>
3275
+
3276
+ <p>&lt;/div&gt;&lt;table class=“source_code”&gt;</p>
3277
+
3278
+ <pre>&lt;tr&gt;
3279
+ &lt;td&gt;
3280
+ &lt;pre class=&quot;lines&quot;&gt;</pre>
3281
+
3282
+ <p>224 225 226&lt;/pre&gt;</p>
3283
+
3284
+ <pre>&lt;/td&gt;
3285
+ &lt;td&gt;
3286
+ &lt;pre class=&quot;code&quot;&gt;&lt;span class=&quot;info file&quot;&gt;# File &#39;lib/rubyneat/rubyneat.rb&#39;, line 224&lt;/span&gt;</pre>
3287
+
3288
+ <p>&lt;span class=&#39;kw&#39;&gt;def&lt;/span&gt; &lt;span class=&#39;id
3289
+ identifier
3290
+ rubyid_weight_coefficient&#39;&gt;weight_coefficient&lt;/span&gt;</p>
3291
+
3292
+ <pre>&lt;span class=&#39;ivar&#39;&gt;@weight_coefficient&lt;/span&gt;</pre>
3293
+
3294
+ <p>&lt;span class=&#39;kw&#39;&gt;end&lt;/span&gt;&lt;/pre&gt;</p>
3295
+
3296
+ <pre> &lt;/td&gt;
3297
+ &lt;/tr&gt;</pre>
3298
+
3299
+ <p>&lt;/table&gt; &lt;/div&gt;</p>
3300
+
3301
+ <pre>&lt;/div&gt;</pre>
3302
+
3303
+ <p>&lt;/div&gt;</p>
3304
+
3305
+ <pre> &lt;div id=&quot;footer&quot;&gt;
3306
+ Generated on Sun Mar 16 16:36:52 2014 by
3307
+ &lt;a href=&quot;http://yardoc.org&quot; title=&quot;Yay! A Ruby Documentation Tool&quot; target=&quot;_parent&quot;&gt;yard&lt;/a&gt;
3308
+ 0.8.7.3 (ruby-2.1.1).</pre>
3309
+
3310
+ <p>&lt;/div&gt;</p>
3311
+
3312
+ <pre>&lt;/body&gt;</pre>
3313
+
3314
+ <p>&lt;/html&gt;</p>
3315
+ </main>
3316
+
3317
+
3318
+
3319
+ <footer id="validator-badges" role="contentinfo">
3320
+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
3321
+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
3322
+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
3323
+ </footer>
3324
+