rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
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  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
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  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
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  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
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  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
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  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
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  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
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  73. data/doc/js/jquery.js +4 -0
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  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
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  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
  145. data/rdoc/NEAT/Evaluator.html +256 -0
  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
  147. data/rdoc/NEAT/Evolver.html +891 -0
  148. data/rdoc/NEAT/Expressor.html +402 -0
  149. data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
  150. data/rdoc/NEAT/Graph/GraphException.html +105 -0
  151. data/rdoc/NEAT/Graph.html +263 -0
  152. data/rdoc/NEAT/NeatException.html +105 -0
  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
  155. data/rdoc/NEAT/Operator.html +109 -0
  156. data/rdoc/NEAT/Population.html +935 -0
  157. data/rdoc/NEAT/Trait.html +117 -0
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  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
  167. data/rdoc/Vector.html +195 -0
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  169. data/rdoc/doc/ControllerPoint_html.html +299 -0
  170. data/rdoc/doc/CuteA_html.html +438 -0
  171. data/rdoc/doc/CuteB_html.html +436 -0
  172. data/rdoc/doc/DSL_html.html +992 -0
  173. data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
  181. data/rdoc/doc/NEAT/Controller_html.html +2212 -0
  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
  183. data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
  184. data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
  185. data/rdoc/doc/NEAT/Critter_html.html +1037 -0
  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
  187. data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
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  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
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  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>class NEAT::Controller::NeatSettings - rubyneat 0.3.4</title>
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+
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../";
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+ </script>
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+
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+ <script src="../../js/jquery.js"></script>
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+ <script src="../../js/navigation.js"></script>
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+ <script src="../../js/search_index.js"></script>
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+ <script src="../../js/search.js"></script>
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+ <script src="../../js/searcher.js"></script>
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+ <script src="../../js/darkfish.js"></script>
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+
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+
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+ <body id="top" role="document" class="class">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../index.html" rel="home">Home</a>
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+ </h2>
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+
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+ <div id="table-of-contents-navigation">
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+ <a href="../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+
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+ </div>
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+
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+ <div id="class-metadata">
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+ <div id="parent-class-section" class="nav-section">
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+ <h3>Parent</h3>
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+
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+
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+ <p class="link"><a href="../NeatOb.html">NEAT::NeatOb</a>
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+
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+ </div>
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+
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+
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+ <li class="calls-super" ><a href="#method-c-new">::new</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::Controller::NeatSettings">
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+ <h1 id="class-NEAT::Controller::NeatSettings" class="class">
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+ class NEAT::Controller::NeatSettings
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+ </h1>
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+
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+ <section class="description">
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+
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+ <p>Various parameters affecting evolution. Based somewhat on the C version of
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+ <a href="../../NEAT.html">NEAT</a>. TODO not all of these parameters are
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+ implemented yet!!!</p>
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+
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+ </section>
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+
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+ <section id="5Buntitled-5D" class="documentation-section">
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+
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+ <section class="attribute-method-details" class="method-section">
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+ <header>
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+ <h3>Attributes</h3>
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+ </header>
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+
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+
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+ <div id="attribute-i-age_significance" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">age_significance</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>based on the C version of <a href="../../NEAT.html">NEAT</a></p>
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-babies_stolen" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">babies_stolen</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+ </div>
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+ </div>
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+ <div id="attribute-i-compatibility_threshold" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">compatibility_threshold</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>Species compatability threshold</p>
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-disjoint_coefficient" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">disjoint_coefficient</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+
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+ <p>Speciation coffficient</p>
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+
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+ </div>
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+ </div>
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+ <div id="attribute-i-dropoff_age" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">dropoff_age</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+ <p>Species Peality age for not making progress</p>
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+
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+ </div>
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+ </div>
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+ <div id="attribute-i-end_sequence_at" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">end_sequence_at</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+ </div>
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+ </div>
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+ <div id="attribute-i-evolved_substrate_switch" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">evolved_substrate_switch</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+
200
+ <p>Enable Evolved Substrate HyperNEAT. Meaningless unless <a
201
+ href="NeatSettings.html#attribute-i-hyper_switch">#hyper_switch</a> is also
202
+ enabled.</p>
203
+
204
+ </div>
205
+ </div>
206
+
207
+ <div id="attribute-i-excess_coefficient" class="method-detail">
208
+ <div class="method-heading attribute-method-heading">
209
+ <span class="method-name">excess_coefficient</span><span
210
+ class="attribute-access-type">[RW]</span>
211
+ </div>
212
+
213
+ <div class="method-description">
214
+
215
+ <p>Speciation coffficient</p>
216
+
217
+ </div>
218
+ </div>
219
+
220
+ <div id="attribute-i-feature_selection_switch" class="method-detail">
221
+ <div class="method-heading attribute-method-heading">
222
+ <span class="method-name">feature_selection_switch</span><span
223
+ class="attribute-access-type">[RW]</span>
224
+ </div>
225
+
226
+ <div class="method-description">
227
+
228
+ <p>Enable FS-NEAT</p>
229
+
230
+ </div>
231
+ </div>
232
+
233
+ <div id="attribute-i-fitness_cost_per_gene" class="method-detail">
234
+ <div class="method-heading attribute-method-heading">
235
+ <span class="method-name">fitness_cost_per_gene</span><span
236
+ class="attribute-access-type">[RW]</span>
237
+ </div>
238
+
239
+ <div class="method-description">
240
+
241
+
242
+
243
+ </div>
244
+ </div>
245
+
246
+ <div id="attribute-i-fitness_cost_per_neuron" class="method-detail">
247
+ <div class="method-heading attribute-method-heading">
248
+ <span class="method-name">fitness_cost_per_neuron</span><span
249
+ class="attribute-access-type">[RW]</span>
250
+ </div>
251
+
252
+ <div class="method-description">
253
+
254
+ <p>fitness costs, if given, use in the computation of fitness AFTER the
255
+ overall fitness for the applied stimuli have been caclulated.</p>
256
+
257
+ </div>
258
+ </div>
259
+
260
+ <div id="attribute-i-hash_on_fitness" class="method-detail">
261
+ <div class="method-heading attribute-method-heading">
262
+ <span class="method-name">hash_on_fitness</span><span
263
+ class="attribute-access-type">[RW]</span>
264
+ </div>
265
+
266
+ <div class="method-description">
267
+
268
+ <p>Set to true to returned named parameters as hashes to the fitness function
269
+ (the default is to do ordered arrays)</p>
270
+
271
+ </div>
272
+ </div>
273
+
274
+ <div id="attribute-i-hyper_switch" class="method-detail">
275
+ <div class="method-heading attribute-method-heading">
276
+ <span class="method-name">hyper_switch</span><span
277
+ class="attribute-access-type">[RW]</span>
278
+ </div>
279
+
280
+ <div class="method-description">
281
+
282
+ <p>Enable HyperNEAT. This will result in the critters being interpreted as
283
+ CPPNs for substrate weights. Additional setup will be necessary.</p>
284
+
285
+ </div>
286
+ </div>
287
+
288
+ <div id="attribute-i-interspecies_mate_rate" class="method-detail">
289
+ <div class="method-heading attribute-method-heading">
290
+ <span class="method-name">interspecies_mate_rate</span><span
291
+ class="attribute-access-type">[RW]</span>
292
+ </div>
293
+
294
+ <div class="method-description">
295
+
296
+ <p>Ratio of mating are actually interspecies</p>
297
+
298
+ </div>
299
+ </div>
300
+
301
+ <div id="attribute-i-linktrait_mutation_sig" class="method-detail">
302
+ <div class="method-heading attribute-method-heading">
303
+ <span class="method-name">linktrait_mutation_sig</span><span
304
+ class="attribute-access-type">[RW]</span>
305
+ </div>
306
+
307
+ <div class="method-description">
308
+
309
+
310
+
311
+ </div>
312
+ </div>
313
+
314
+ <div id="attribute-i-mate_multipoint_avg_prob" class="method-detail">
315
+ <div class="method-heading attribute-method-heading">
316
+ <span class="method-name">mate_multipoint_avg_prob</span><span
317
+ class="attribute-access-type">[RW]</span>
318
+ </div>
319
+
320
+ <div class="method-description">
321
+
322
+
323
+
324
+ </div>
325
+ </div>
326
+
327
+ <div id="attribute-i-mate_multipoint_prob" class="method-detail">
328
+ <div class="method-heading attribute-method-heading">
329
+ <span class="method-name">mate_multipoint_prob</span><span
330
+ class="attribute-access-type">[RW]</span>
331
+ </div>
332
+
333
+ <div class="method-description">
334
+
335
+
336
+
337
+ </div>
338
+ </div>
339
+
340
+ <div id="attribute-i-mate_only_prob" class="method-detail">
341
+ <div class="method-heading attribute-method-heading">
342
+ <span class="method-name">mate_only_prob</span><span
343
+ class="attribute-access-type">[RW]</span>
344
+ </div>
345
+
346
+ <div class="method-description">
347
+
348
+
349
+
350
+ </div>
351
+ </div>
352
+
353
+ <div id="attribute-i-mate_singlepoint_prob" class="method-detail">
354
+ <div class="method-heading attribute-method-heading">
355
+ <span class="method-name">mate_singlepoint_prob</span><span
356
+ class="attribute-access-type">[RW]</span>
357
+ </div>
358
+
359
+ <div class="method-description">
360
+
361
+
362
+
363
+ </div>
364
+ </div>
365
+
366
+ <div id="attribute-i-max_generations" class="method-detail">
367
+ <div class="method-heading attribute-method-heading">
368
+ <span class="method-name">max_generations</span><span
369
+ class="attribute-access-type">[RW]</span>
370
+ </div>
371
+
372
+ <div class="method-description">
373
+
374
+ <p>Maximum number of generations to run, if given.</p>
375
+
376
+ </div>
377
+ </div>
378
+
379
+ <div id="attribute-i-max_population_history" class="method-detail">
380
+ <div class="method-heading attribute-method-heading">
381
+ <span class="method-name">max_population_history</span><span
382
+ class="attribute-access-type">[RW]</span>
383
+ </div>
384
+
385
+ <div class="method-description">
386
+
387
+ <p>Maximun number of populations to maintain in the history buffer.</p>
388
+
389
+ </div>
390
+ </div>
391
+
392
+ <div id="attribute-i-max_species" class="method-detail">
393
+ <div class="method-heading attribute-method-heading">
394
+ <span class="method-name">max_species</span><span
395
+ class="attribute-access-type">[RW]</span>
396
+ </div>
397
+
398
+ <div class="method-description">
399
+
400
+ <p>Max target number of species (will result in the compatability_coeifficient
401
+ being adjusted automatically</p>
402
+
403
+ </div>
404
+ </div>
405
+
406
+ <div id="attribute-i-mutate_add_gene_prob" class="method-detail">
407
+ <div class="method-heading attribute-method-heading">
408
+ <span class="method-name">mutate_add_gene_prob</span><span
409
+ class="attribute-access-type">[RW]</span>
410
+ </div>
411
+
412
+ <div class="method-description">
413
+
414
+
415
+
416
+ </div>
417
+ </div>
418
+
419
+ <div id="attribute-i-mutate_add_neuron_prob" class="method-detail">
420
+ <div class="method-heading attribute-method-heading">
421
+ <span class="method-name">mutate_add_neuron_prob</span><span
422
+ class="attribute-access-type">[RW]</span>
423
+ </div>
424
+
425
+ <div class="method-description">
426
+
427
+
428
+
429
+ </div>
430
+ </div>
431
+
432
+ <div id="attribute-i-mutate_change_gene_weights_prob" class="method-detail">
433
+ <div class="method-heading attribute-method-heading">
434
+ <span class="method-name">mutate_change_gene_weights_prob</span><span
435
+ class="attribute-access-type">[RW]</span>
436
+ </div>
437
+
438
+ <div class="method-description">
439
+
440
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
441
+
442
+ </div>
443
+ </div>
444
+
445
+ <div id="attribute-i-mutate_change_gene_weights_sd" class="method-detail">
446
+ <div class="method-heading attribute-method-heading">
447
+ <span class="method-name">mutate_change_gene_weights_sd</span><span
448
+ class="attribute-access-type">[RW]</span>
449
+ </div>
450
+
451
+ <div class="method-description">
452
+
453
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
454
+
455
+ </div>
456
+ </div>
457
+
458
+ <div id="attribute-i-mutate_gene_disable_prob" class="method-detail">
459
+ <div class="method-heading attribute-method-heading">
460
+ <span class="method-name">mutate_gene_disable_prob</span><span
461
+ class="attribute-access-type">[RW]</span>
462
+ </div>
463
+
464
+ <div class="method-description">
465
+
466
+
467
+
468
+ </div>
469
+ </div>
470
+
471
+ <div id="attribute-i-mutate_gene_reenable_prob" class="method-detail">
472
+ <div class="method-heading attribute-method-heading">
473
+ <span class="method-name">mutate_gene_reenable_prob</span><span
474
+ class="attribute-access-type">[RW]</span>
475
+ </div>
476
+
477
+ <div class="method-description">
478
+
479
+
480
+
481
+ </div>
482
+ </div>
483
+
484
+ <div id="attribute-i-mutate_gene_trait_prob" class="method-detail">
485
+ <div class="method-heading attribute-method-heading">
486
+ <span class="method-name">mutate_gene_trait_prob</span><span
487
+ class="attribute-access-type">[RW]</span>
488
+ </div>
489
+
490
+ <div class="method-description">
491
+
492
+
493
+
494
+ </div>
495
+ </div>
496
+
497
+ <div id="attribute-i-mutate_neuron_trait_prob" class="method-detail">
498
+ <div class="method-heading attribute-method-heading">
499
+ <span class="method-name">mutate_neuron_trait_prob</span><span
500
+ class="attribute-access-type">[RW]</span>
501
+ </div>
502
+
503
+ <div class="method-description">
504
+
505
+
506
+
507
+ </div>
508
+ </div>
509
+
510
+ <div id="attribute-i-mutate_only_prob" class="method-detail">
511
+ <div class="method-heading attribute-method-heading">
512
+ <span class="method-name">mutate_only_prob</span><span
513
+ class="attribute-access-type">[RW]</span>
514
+ </div>
515
+
516
+ <div class="method-description">
517
+
518
+
519
+
520
+ </div>
521
+ </div>
522
+
523
+ <div id="attribute-i-mutate_perturb_gene_weights_prob" class="method-detail">
524
+ <div class="method-heading attribute-method-heading">
525
+ <span class="method-name">mutate_perturb_gene_weights_prob</span><span
526
+ class="attribute-access-type">[RW]</span>
527
+ </div>
528
+
529
+ <div class="method-description">
530
+
531
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
532
+
533
+ </div>
534
+ </div>
535
+
536
+ <div id="attribute-i-mutate_perturb_gene_weights_sd" class="method-detail">
537
+ <div class="method-heading attribute-method-heading">
538
+ <span class="method-name">mutate_perturb_gene_weights_sd</span><span
539
+ class="attribute-access-type">[RW]</span>
540
+ </div>
541
+
542
+ <div class="method-description">
543
+
544
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
545
+
546
+ </div>
547
+ </div>
548
+
549
+ <div id="attribute-i-mutate_random_trait_prob" class="method-detail">
550
+ <div class="method-heading attribute-method-heading">
551
+ <span class="method-name">mutate_random_trait_prob</span><span
552
+ class="attribute-access-type">[RW]</span>
553
+ </div>
554
+
555
+ <div class="method-description">
556
+
557
+
558
+
559
+ </div>
560
+ </div>
561
+
562
+ <div id="attribute-i-mutate_toggle_enable_prob" class="method-detail">
563
+ <div class="method-heading attribute-method-heading">
564
+ <span class="method-name">mutate_toggle_enable_prob</span><span
565
+ class="attribute-access-type">[RW]</span>
566
+ </div>
567
+
568
+ <div class="method-description">
569
+
570
+
571
+
572
+ </div>
573
+ </div>
574
+
575
+ <div id="attribute-i-mutdiff_coefficient" class="method-detail">
576
+ <div class="method-heading attribute-method-heading">
577
+ <span class="method-name">mutdiff_coefficient</span><span
578
+ class="attribute-access-type">[RW]</span>
579
+ </div>
580
+
581
+ <div class="method-description">
582
+
583
+
584
+
585
+ </div>
586
+ </div>
587
+
588
+ <div id="attribute-i-neuron_trait_mut_sig" class="method-detail">
589
+ <div class="method-heading attribute-method-heading">
590
+ <span class="method-name">neuron_trait_mut_sig</span><span
591
+ class="attribute-access-type">[RW]</span>
592
+ </div>
593
+
594
+ <div class="method-description">
595
+
596
+
597
+
598
+ </div>
599
+ </div>
600
+
601
+ <div id="attribute-i-newlink_tries" class="method-detail">
602
+ <div class="method-heading attribute-method-heading">
603
+ <span class="method-name">newlink_tries</span><span
604
+ class="attribute-access-type">[RW]</span>
605
+ </div>
606
+
607
+ <div class="method-description">
608
+
609
+
610
+
611
+ </div>
612
+ </div>
613
+
614
+ <div id="attribute-i-population_size" class="method-detail">
615
+ <div class="method-heading attribute-method-heading">
616
+ <span class="method-name">population_size</span><span
617
+ class="attribute-access-type">[RW]</span>
618
+ </div>
619
+
620
+ <div class="method-description">
621
+
622
+ <p>If set, will start off at the specified size and grow to the bigger
623
+ population size</p>
624
+
625
+ </div>
626
+ </div>
627
+
628
+ <div id="attribute-i-print_every" class="method-detail">
629
+ <div class="method-heading attribute-method-heading">
630
+ <span class="method-name">print_every</span><span
631
+ class="attribute-access-type">[RW]</span>
632
+ </div>
633
+
634
+ <div class="method-description">
635
+
636
+
637
+
638
+ </div>
639
+ </div>
640
+
641
+ <div id="attribute-i-real_time_switch" class="method-detail">
642
+ <div class="method-heading attribute-method-heading">
643
+ <span class="method-name">real_time_switch</span><span
644
+ class="attribute-access-type">[RW]</span>
645
+ </div>
646
+
647
+ <div class="method-description">
648
+
649
+ <p>Enable RT-NEAT, for gradual evolution suitable for games and other
650
+ human-interactive systems.</p>
651
+
652
+ </div>
653
+ </div>
654
+
655
+ <div id="attribute-i-recur_only_prob" class="method-detail">
656
+ <div class="method-heading attribute-method-heading">
657
+ <span class="method-name">recur_only_prob</span><span
658
+ class="attribute-access-type">[RW]</span>
659
+ </div>
660
+
661
+ <div class="method-description">
662
+
663
+
664
+
665
+ </div>
666
+ </div>
667
+
668
+ <div id="attribute-i-recur_prob" class="method-detail">
669
+ <div class="method-heading attribute-method-heading">
670
+ <span class="method-name">recur_prob</span><span
671
+ class="attribute-access-type">[RW]</span>
672
+ </div>
673
+
674
+ <div class="method-description">
675
+
676
+
677
+
678
+ </div>
679
+ </div>
680
+
681
+ <div id="attribute-i-recurrency_switch" class="method-detail">
682
+ <div class="method-heading attribute-method-heading">
683
+ <span class="method-name">recurrency_switch</span><span
684
+ class="attribute-access-type">[RW]</span>
685
+ </div>
686
+
687
+ <div class="method-description">
688
+
689
+ <p>If true, allow for recurrent networks.</p>
690
+
691
+ </div>
692
+ </div>
693
+
694
+ <div id="attribute-i-smallest_species" class="method-detail">
695
+ <div class="method-heading attribute-method-heading">
696
+ <span class="method-name">smallest_species</span><span
697
+ class="attribute-access-type">[RW]</span>
698
+ </div>
699
+
700
+ <div class="method-description">
701
+
702
+ <p>Species smallest population allowed (coalse smaller species into one)</p>
703
+
704
+ </div>
705
+ </div>
706
+
707
+ <div id="attribute-i-start_population_size" class="method-detail">
708
+ <div class="method-heading attribute-method-heading">
709
+ <span class="method-name">start_population_size</span><span
710
+ class="attribute-access-type">[RW]</span>
711
+ </div>
712
+
713
+ <div class="method-description">
714
+
715
+ <p>If set, will start off at the specified size and grow to the bigger
716
+ population size</p>
717
+
718
+ </div>
719
+ </div>
720
+
721
+ <div id="attribute-i-start_sequence_at" class="method-detail">
722
+ <div class="method-heading attribute-method-heading">
723
+ <span class="method-name">start_sequence_at</span><span
724
+ class="attribute-access-type">[RW]</span>
725
+ </div>
726
+
727
+ <div class="method-description">
728
+
729
+
730
+
731
+ </div>
732
+ </div>
733
+
734
+ <div id="attribute-i-survival_mininum_per_species" class="method-detail">
735
+ <div class="method-heading attribute-method-heading">
736
+ <span class="method-name">survival_mininum_per_species</span><span
737
+ class="attribute-access-type">[RW]</span>
738
+ </div>
739
+
740
+ <div class="method-description">
741
+
742
+
743
+
744
+ </div>
745
+ </div>
746
+
747
+ <div id="attribute-i-survival_threshold" class="method-detail">
748
+ <div class="method-heading attribute-method-heading">
749
+ <span class="method-name">survival_threshold</span><span
750
+ class="attribute-access-type">[RW]</span>
751
+ </div>
752
+
753
+ <div class="method-description">
754
+
755
+ <p>factor (0 to 1) of the top percentage of the species that&#39;s allowed to
756
+ mate.</p>
757
+
758
+ </div>
759
+ </div>
760
+
761
+ <div id="attribute-i-trait_mutation_power" class="method-detail">
762
+ <div class="method-heading attribute-method-heading">
763
+ <span class="method-name">trait_mutation_power</span><span
764
+ class="attribute-access-type">[RW]</span>
765
+ </div>
766
+
767
+ <div class="method-description">
768
+
769
+
770
+
771
+ </div>
772
+ </div>
773
+
774
+ <div id="attribute-i-trait_param_mut_prob" class="method-detail">
775
+ <div class="method-heading attribute-method-heading">
776
+ <span class="method-name">trait_param_mut_prob</span><span
777
+ class="attribute-access-type">[RW]</span>
778
+ </div>
779
+
780
+ <div class="method-description">
781
+
782
+
783
+
784
+ </div>
785
+ </div>
786
+
787
+ <div id="attribute-i-weigh_mut_power" class="method-detail">
788
+ <div class="method-heading attribute-method-heading">
789
+ <span class="method-name">weigh_mut_power</span><span
790
+ class="attribute-access-type">[RW]</span>
791
+ </div>
792
+
793
+ <div class="method-description">
794
+
795
+
796
+
797
+ </div>
798
+ </div>
799
+
800
+ <div id="attribute-i-weight_coefficient" class="method-detail">
801
+ <div class="method-heading attribute-method-heading">
802
+ <span class="method-name">weight_coefficient</span><span
803
+ class="attribute-access-type">[RW]</span>
804
+ </div>
805
+
806
+ <div class="method-description">
807
+
808
+ <p>Speciation coffficient</p>
809
+
810
+ </div>
811
+ </div>
812
+
813
+ </section>
814
+
815
+
816
+
817
+ <section id="public-class-5Buntitled-5D-method-details" class="method-section">
818
+ <header>
819
+ <h3>Public Class Methods</h3>
820
+ </header>
821
+
822
+
823
+ <div id="method-c-new" class="method-detail ">
824
+
825
+ <div class="method-heading">
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+ <span class="method-name">new</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Set up defaults for mandatory entries.</p>
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+
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+
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+ <div class="method-calls-super">
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+ Calls superclass method
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+ <a href="../NeatOb.html#method-c-new">NEAT::NeatOb.new</a>
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+ </div>
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+
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+
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+
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+ <div class="method-source-code" id="new-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 318</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>
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+ <span class="ruby-keyword">super</span>
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+ <span class="ruby-ivar">@start_sequence_at</span> = <span class="ruby-value">0</span>
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+ <span class="ruby-ivar">@end_sequence_at</span> = <span class="ruby-value">100</span>
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+ <span class="ruby-ivar">@max_generations</span> = <span class="ruby-value">1000</span>
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+
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+ <span class="ruby-comment"># Default operators</span>
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+ <span class="ruby-ivar">@evaluator</span> = <span class="ruby-constant">Evaluator</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-ivar">@expressor</span> = <span class="ruby-constant">Expressor</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-ivar">@evolver</span> = <span class="ruby-constant">Evolver</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ </section>
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+
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+ </section>
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+ </main>
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+
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+
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+ <footer id="validator-badges" role="contentinfo">
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+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+