rubyneat 0.3.5.alpha.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (261) hide show
  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
  7. data/.idea/encodings.xml +5 -0
  8. data/.idea/misc.xml +5 -0
  9. data/.idea/modules.xml +9 -0
  10. data/.idea/rubyneat.iml +197 -0
  11. data/.idea/runConfigurations/invpend_neat.xml +26 -0
  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
  14. data/.idea/runConfigurations/xordebug_neat.xml +24 -0
  15. data/.idea/runConfigurations/xorsin_neat.xml +24 -0
  16. data/.idea/scopes/scope_settings.xml +5 -0
  17. data/.idea/vcs.xml +7 -0
  18. data/.idea/workspace.xml +1124 -0
  19. data/.semver +5 -0
  20. data/.yardoc/checksums +11 -0
  21. data/.yardoc/object_types +0 -0
  22. data/.yardoc/objects/root.dat +0 -0
  23. data/.yardoc/proxy_types +0 -0
  24. data/Gemfile +32 -0
  25. data/Gemfile.lock +135 -0
  26. data/Gemfile.lock.orig +147 -0
  27. data/Guardfile +8 -0
  28. data/Rakefile +61 -0
  29. data/bin/neat +83 -0
  30. data/config/application.rb +5 -0
  31. data/doc/ControllerPoint.html +125 -0
  32. data/doc/CuteA.html +286 -0
  33. data/doc/CuteB.html +297 -0
  34. data/doc/DSL.html +883 -0
  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
  41. data/doc/NEAT/BasicNeuronTypes.html +136 -0
  42. data/doc/NEAT/Controller/NeatSettings.html +3985 -0
  43. data/doc/NEAT/Controller.html +2490 -0
  44. data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
  45. data/doc/NEAT/Critter/Genotype.html +1601 -0
  46. data/doc/NEAT/Critter/Phenotype.html +603 -0
  47. data/doc/NEAT/Critter.html +1037 -0
  48. data/doc/NEAT/DSL.html +1255 -0
  49. data/doc/NEAT/Evaluator.html +420 -0
  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
  51. data/doc/NEAT/Evolver.html +602 -0
  52. data/doc/NEAT/Expressor.html +327 -0
  53. data/doc/NEAT/Graph/DependencyResolver.html +478 -0
  54. data/doc/NEAT/Graph/GraphException.html +123 -0
  55. data/doc/NEAT/Graph.html +402 -0
  56. data/doc/NEAT/NeatException.html +123 -0
  57. data/doc/NEAT/NeatOb.html +567 -0
  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
  62. data/doc/NEAT.html +588 -0
  63. data/doc/_index.html +373 -0
  64. data/doc/class_list.html +54 -0
  65. data/doc/css/common.css +1 -0
  66. data/doc/css/full_list.css +57 -0
  67. data/doc/css/style.css +339 -0
  68. data/doc/file_list.html +53 -0
  69. data/doc/frames.html +26 -0
  70. data/doc/index.html +373 -0
  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
  74. data/doc/method_list.html +1415 -0
  75. data/doc/top-level-namespace.html +164 -0
  76. data/foo/foo_aquarium_example.rb +38 -0
  77. data/foo/foo_gosu.rb +99 -0
  78. data/foo/foo_rubygoo.rb +104 -0
  79. data/foo/foo_sdl.rb +34 -0
  80. data/foo/icon.png +0 -0
  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
  101. data/public/background.png +0 -0
  102. data/public/background.xcf +0 -0
  103. data/public/cart.png +0 -0
  104. data/public/cart.xcf +0 -0
  105. data/public/metalpoles_molton_ball_l.jpg +0 -0
  106. data/public/old_background.png +0 -0
  107. data/public/pointer.png +0 -0
  108. data/public/pointer.xcf +0 -0
  109. data/public/pole.kra +0 -0
  110. data/public/pole.png +0 -0
  111. data/public/pole.xcf +0 -0
  112. data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
  113. data/public/wheel.png +0 -0
  114. data/public/wheel.xcf +0 -0
  115. data/public/wood-planks-texture.jpg +0 -0
  116. data/rdoc/ControllerPoint.html +116 -0
  117. data/rdoc/CuteA.html +177 -0
  118. data/rdoc/CuteB.html +178 -0
  119. data/rdoc/DSLSetup.html +177 -0
  120. data/rdoc/GameTestWindow.html +242 -0
  121. data/rdoc/GameWindow.html +292 -0
  122. data/rdoc/Gemfile.html +215 -0
  123. data/rdoc/Gemfile_lock.html +327 -0
  124. data/rdoc/GraphTest.html +210 -0
  125. data/rdoc/Guardfile.html +198 -0
  126. data/rdoc/InvertedPendulum/Cart.html +668 -0
  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
  134. data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
  136. data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
  137. data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
  138. data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
  139. data/rdoc/NEAT/Controller.html +729 -0
  140. data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
  143. data/rdoc/NEAT/Critter.html +489 -0
  144. data/rdoc/NEAT/DSL.html +729 -0
  145. data/rdoc/NEAT/Evaluator.html +256 -0
  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
  147. data/rdoc/NEAT/Evolver.html +891 -0
  148. data/rdoc/NEAT/Expressor.html +402 -0
  149. data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
  150. data/rdoc/NEAT/Graph/GraphException.html +105 -0
  151. data/rdoc/NEAT/Graph.html +263 -0
  152. data/rdoc/NEAT/NeatException.html +105 -0
  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
  155. data/rdoc/NEAT/Operator.html +109 -0
  156. data/rdoc/NEAT/Population.html +935 -0
  157. data/rdoc/NEAT/Trait.html +117 -0
  158. data/rdoc/NEAT.html +422 -0
  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
  167. data/rdoc/Vector.html +195 -0
  168. data/rdoc/created.rid +125 -0
  169. data/rdoc/doc/ControllerPoint_html.html +299 -0
  170. data/rdoc/doc/CuteA_html.html +438 -0
  171. data/rdoc/doc/CuteB_html.html +436 -0
  172. data/rdoc/doc/DSL_html.html +992 -0
  173. data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
  174. data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
  181. data/rdoc/doc/NEAT/Controller_html.html +2212 -0
  182. data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
  183. data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
  184. data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
  185. data/rdoc/doc/NEAT/Critter_html.html +1037 -0
  186. data/rdoc/doc/NEAT/DSL_html.html +1349 -0
  187. data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
  188. data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
  193. data/rdoc/doc/NEAT/Graph_html.html +527 -0
  194. data/rdoc/doc/NEAT/NeatException_html.html +299 -0
  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
  200. data/rdoc/doc/NEAT_html.html +736 -0
  201. data/rdoc/doc/_index_html.html +559 -0
  202. data/rdoc/doc/class_list_html.html +369 -0
  203. data/rdoc/doc/css/common_css.html +188 -0
  204. data/rdoc/doc/css/full_list_css.html +243 -0
  205. data/rdoc/doc/css/style_css.html +530 -0
  206. data/rdoc/doc/file_list_html.html +240 -0
  207. data/rdoc/doc/frames_html.html +217 -0
  208. data/rdoc/doc/index_html.html +559 -0
  209. data/rdoc/doc/js/app_js.html +423 -0
  210. data/rdoc/doc/js/full_list_js.html +372 -0
  211. data/rdoc/doc/js/jquery_js.html +1536 -0
  212. data/rdoc/doc/method_list_html.html +1375 -0
  213. data/rdoc/doc/top-level-namespace_html.html +317 -0
  214. data/rdoc/fonts/Lato-Light.ttf +0 -0
  215. data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
  216. data/rdoc/fonts/Lato-Regular.ttf +0 -0
  217. data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
  218. data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
  219. data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
  220. data/rdoc/fonts.css +167 -0
  221. data/rdoc/images/add.png +0 -0
  222. data/rdoc/images/arrow_up.png +0 -0
  223. data/rdoc/images/brick.png +0 -0
  224. data/rdoc/images/brick_link.png +0 -0
  225. data/rdoc/images/bug.png +0 -0
  226. data/rdoc/images/bullet_black.png +0 -0
  227. data/rdoc/images/bullet_toggle_minus.png +0 -0
  228. data/rdoc/images/bullet_toggle_plus.png +0 -0
  229. data/rdoc/images/date.png +0 -0
  230. data/rdoc/images/delete.png +0 -0
  231. data/rdoc/images/find.png +0 -0
  232. data/rdoc/images/loadingAnimation.gif +0 -0
  233. data/rdoc/images/macFFBgHack.png +0 -0
  234. data/rdoc/images/package.png +0 -0
  235. data/rdoc/images/page_green.png +0 -0
  236. data/rdoc/images/page_white_text.png +0 -0
  237. data/rdoc/images/page_white_width.png +0 -0
  238. data/rdoc/images/plugin.png +0 -0
  239. data/rdoc/images/ruby.png +0 -0
  240. data/rdoc/images/tag_blue.png +0 -0
  241. data/rdoc/images/tag_green.png +0 -0
  242. data/rdoc/images/transparent.png +0 -0
  243. data/rdoc/images/wrench.png +0 -0
  244. data/rdoc/images/wrench_orange.png +0 -0
  245. data/rdoc/images/zoom.png +0 -0
  246. data/rdoc/index.html +282 -0
  247. data/rdoc/js/darkfish.js +140 -0
  248. data/rdoc/js/jquery.js +18 -0
  249. data/rdoc/js/navigation.js +142 -0
  250. data/rdoc/js/search.js +109 -0
  251. data/rdoc/js/search_index.js +1 -0
  252. data/rdoc/js/searcher.js +228 -0
  253. data/rdoc/rdoc.css +580 -0
  254. data/rdoc/rubyneat_gemspec.html +387 -0
  255. data/rdoc/table_of_contents.html +2502 -0
  256. data/rdoc/xordebug_log.html +170598 -0
  257. data/rdoc/xorsin_log.html +22569 -0
  258. data/rubyneat.gemspec +347 -0
  259. data/rubyneat.gemspec.orig +375 -0
  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
@@ -0,0 +1,880 @@
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>class NEAT::Controller::NeatSettings - rubyneat 0.3.4</title>
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+
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+ <link href="../../fonts.css" rel="stylesheet">
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+ <link href="../../rdoc.css" rel="stylesheet">
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+
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../../";
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+ </script>
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+
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+ <script src="../../js/jquery.js"></script>
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+ <script src="../../js/navigation.js"></script>
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+ <script src="../../js/search_index.js"></script>
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+ <script src="../../js/search.js"></script>
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+ <script src="../../js/searcher.js"></script>
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+ <script src="../../js/darkfish.js"></script>
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+
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+
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+ <body id="top" role="document" class="class">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../../index.html" rel="home">Home</a>
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+ </h2>
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+
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+ <div id="table-of-contents-navigation">
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+ <a href="../../table_of_contents.html#pages">Pages</a>
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+ <a href="../../table_of_contents.html#classes">Classes</a>
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+ <a href="../../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+
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+ </div>
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+
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+
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+ <div id="class-metadata">
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+
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+ <div id="parent-class-section" class="nav-section">
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+ <h3>Parent</h3>
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+
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+
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+ <p class="link"><a href="../NeatOb.html">NEAT::NeatOb</a>
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+
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+ </div>
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+
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+
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+ <li class="calls-super" ><a href="#method-c-new">::new</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::Controller::NeatSettings">
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+ <h1 id="class-NEAT::Controller::NeatSettings" class="class">
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+ class NEAT::Controller::NeatSettings
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+ </h1>
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+
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+ <section class="description">
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+
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+ <p>Various parameters affecting evolution. Based somewhat on the C version of
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+ <a href="../../NEAT.html">NEAT</a>. TODO not all of these parameters are
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+ implemented yet!!!</p>
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+
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+ </section>
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+
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+ <section id="5Buntitled-5D" class="documentation-section">
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+
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+ <section class="attribute-method-details" class="method-section">
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+ <header>
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+ <h3>Attributes</h3>
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+ </header>
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+
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+
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+ <div id="attribute-i-age_significance" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">age_significance</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>based on the C version of <a href="../../NEAT.html">NEAT</a></p>
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-babies_stolen" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">babies_stolen</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-compatibility_threshold" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">compatibility_threshold</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>Species compatability threshold</p>
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-disjoint_coefficient" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">disjoint_coefficient</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>Speciation coffficient</p>
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+
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+ </div>
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+ </div>
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+
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+ <div id="attribute-i-dropoff_age" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">dropoff_age</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+
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+ <div class="method-description">
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+
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+ <p>Species Peality age for not making progress</p>
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+
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+ </div>
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+ </div>
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+ <div id="attribute-i-end_sequence_at" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">end_sequence_at</span><span
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+ class="attribute-access-type">[RW]</span>
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+ </div>
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+ <div class="method-description">
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+ </div>
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+ </div>
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+ <div id="attribute-i-evolved_substrate_switch" class="method-detail">
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+ <div class="method-heading attribute-method-heading">
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+ <span class="method-name">evolved_substrate_switch</span><span
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+ class="attribute-access-type">[RW]</span>
196
+ </div>
197
+
198
+ <div class="method-description">
199
+
200
+ <p>Enable Evolved Substrate HyperNEAT. Meaningless unless <a
201
+ href="NeatSettings.html#attribute-i-hyper_switch">#hyper_switch</a> is also
202
+ enabled.</p>
203
+
204
+ </div>
205
+ </div>
206
+
207
+ <div id="attribute-i-excess_coefficient" class="method-detail">
208
+ <div class="method-heading attribute-method-heading">
209
+ <span class="method-name">excess_coefficient</span><span
210
+ class="attribute-access-type">[RW]</span>
211
+ </div>
212
+
213
+ <div class="method-description">
214
+
215
+ <p>Speciation coffficient</p>
216
+
217
+ </div>
218
+ </div>
219
+
220
+ <div id="attribute-i-feature_selection_switch" class="method-detail">
221
+ <div class="method-heading attribute-method-heading">
222
+ <span class="method-name">feature_selection_switch</span><span
223
+ class="attribute-access-type">[RW]</span>
224
+ </div>
225
+
226
+ <div class="method-description">
227
+
228
+ <p>Enable FS-NEAT</p>
229
+
230
+ </div>
231
+ </div>
232
+
233
+ <div id="attribute-i-fitness_cost_per_gene" class="method-detail">
234
+ <div class="method-heading attribute-method-heading">
235
+ <span class="method-name">fitness_cost_per_gene</span><span
236
+ class="attribute-access-type">[RW]</span>
237
+ </div>
238
+
239
+ <div class="method-description">
240
+
241
+
242
+
243
+ </div>
244
+ </div>
245
+
246
+ <div id="attribute-i-fitness_cost_per_neuron" class="method-detail">
247
+ <div class="method-heading attribute-method-heading">
248
+ <span class="method-name">fitness_cost_per_neuron</span><span
249
+ class="attribute-access-type">[RW]</span>
250
+ </div>
251
+
252
+ <div class="method-description">
253
+
254
+ <p>fitness costs, if given, use in the computation of fitness AFTER the
255
+ overall fitness for the applied stimuli have been caclulated.</p>
256
+
257
+ </div>
258
+ </div>
259
+
260
+ <div id="attribute-i-hash_on_fitness" class="method-detail">
261
+ <div class="method-heading attribute-method-heading">
262
+ <span class="method-name">hash_on_fitness</span><span
263
+ class="attribute-access-type">[RW]</span>
264
+ </div>
265
+
266
+ <div class="method-description">
267
+
268
+ <p>Set to true to returned named parameters as hashes to the fitness function
269
+ (the default is to do ordered arrays)</p>
270
+
271
+ </div>
272
+ </div>
273
+
274
+ <div id="attribute-i-hyper_switch" class="method-detail">
275
+ <div class="method-heading attribute-method-heading">
276
+ <span class="method-name">hyper_switch</span><span
277
+ class="attribute-access-type">[RW]</span>
278
+ </div>
279
+
280
+ <div class="method-description">
281
+
282
+ <p>Enable HyperNEAT. This will result in the critters being interpreted as
283
+ CPPNs for substrate weights. Additional setup will be necessary.</p>
284
+
285
+ </div>
286
+ </div>
287
+
288
+ <div id="attribute-i-interspecies_mate_rate" class="method-detail">
289
+ <div class="method-heading attribute-method-heading">
290
+ <span class="method-name">interspecies_mate_rate</span><span
291
+ class="attribute-access-type">[RW]</span>
292
+ </div>
293
+
294
+ <div class="method-description">
295
+
296
+ <p>Ratio of mating are actually interspecies</p>
297
+
298
+ </div>
299
+ </div>
300
+
301
+ <div id="attribute-i-linktrait_mutation_sig" class="method-detail">
302
+ <div class="method-heading attribute-method-heading">
303
+ <span class="method-name">linktrait_mutation_sig</span><span
304
+ class="attribute-access-type">[RW]</span>
305
+ </div>
306
+
307
+ <div class="method-description">
308
+
309
+
310
+
311
+ </div>
312
+ </div>
313
+
314
+ <div id="attribute-i-mate_multipoint_avg_prob" class="method-detail">
315
+ <div class="method-heading attribute-method-heading">
316
+ <span class="method-name">mate_multipoint_avg_prob</span><span
317
+ class="attribute-access-type">[RW]</span>
318
+ </div>
319
+
320
+ <div class="method-description">
321
+
322
+
323
+
324
+ </div>
325
+ </div>
326
+
327
+ <div id="attribute-i-mate_multipoint_prob" class="method-detail">
328
+ <div class="method-heading attribute-method-heading">
329
+ <span class="method-name">mate_multipoint_prob</span><span
330
+ class="attribute-access-type">[RW]</span>
331
+ </div>
332
+
333
+ <div class="method-description">
334
+
335
+
336
+
337
+ </div>
338
+ </div>
339
+
340
+ <div id="attribute-i-mate_only_prob" class="method-detail">
341
+ <div class="method-heading attribute-method-heading">
342
+ <span class="method-name">mate_only_prob</span><span
343
+ class="attribute-access-type">[RW]</span>
344
+ </div>
345
+
346
+ <div class="method-description">
347
+
348
+
349
+
350
+ </div>
351
+ </div>
352
+
353
+ <div id="attribute-i-mate_singlepoint_prob" class="method-detail">
354
+ <div class="method-heading attribute-method-heading">
355
+ <span class="method-name">mate_singlepoint_prob</span><span
356
+ class="attribute-access-type">[RW]</span>
357
+ </div>
358
+
359
+ <div class="method-description">
360
+
361
+
362
+
363
+ </div>
364
+ </div>
365
+
366
+ <div id="attribute-i-max_generations" class="method-detail">
367
+ <div class="method-heading attribute-method-heading">
368
+ <span class="method-name">max_generations</span><span
369
+ class="attribute-access-type">[RW]</span>
370
+ </div>
371
+
372
+ <div class="method-description">
373
+
374
+ <p>Maximum number of generations to run, if given.</p>
375
+
376
+ </div>
377
+ </div>
378
+
379
+ <div id="attribute-i-max_population_history" class="method-detail">
380
+ <div class="method-heading attribute-method-heading">
381
+ <span class="method-name">max_population_history</span><span
382
+ class="attribute-access-type">[RW]</span>
383
+ </div>
384
+
385
+ <div class="method-description">
386
+
387
+ <p>Maximun number of populations to maintain in the history buffer.</p>
388
+
389
+ </div>
390
+ </div>
391
+
392
+ <div id="attribute-i-max_species" class="method-detail">
393
+ <div class="method-heading attribute-method-heading">
394
+ <span class="method-name">max_species</span><span
395
+ class="attribute-access-type">[RW]</span>
396
+ </div>
397
+
398
+ <div class="method-description">
399
+
400
+ <p>Max target number of species (will result in the compatability_coeifficient
401
+ being adjusted automatically</p>
402
+
403
+ </div>
404
+ </div>
405
+
406
+ <div id="attribute-i-mutate_add_gene_prob" class="method-detail">
407
+ <div class="method-heading attribute-method-heading">
408
+ <span class="method-name">mutate_add_gene_prob</span><span
409
+ class="attribute-access-type">[RW]</span>
410
+ </div>
411
+
412
+ <div class="method-description">
413
+
414
+
415
+
416
+ </div>
417
+ </div>
418
+
419
+ <div id="attribute-i-mutate_add_neuron_prob" class="method-detail">
420
+ <div class="method-heading attribute-method-heading">
421
+ <span class="method-name">mutate_add_neuron_prob</span><span
422
+ class="attribute-access-type">[RW]</span>
423
+ </div>
424
+
425
+ <div class="method-description">
426
+
427
+
428
+
429
+ </div>
430
+ </div>
431
+
432
+ <div id="attribute-i-mutate_change_gene_weights_prob" class="method-detail">
433
+ <div class="method-heading attribute-method-heading">
434
+ <span class="method-name">mutate_change_gene_weights_prob</span><span
435
+ class="attribute-access-type">[RW]</span>
436
+ </div>
437
+
438
+ <div class="method-description">
439
+
440
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
441
+
442
+ </div>
443
+ </div>
444
+
445
+ <div id="attribute-i-mutate_change_gene_weights_sd" class="method-detail">
446
+ <div class="method-heading attribute-method-heading">
447
+ <span class="method-name">mutate_change_gene_weights_sd</span><span
448
+ class="attribute-access-type">[RW]</span>
449
+ </div>
450
+
451
+ <div class="method-description">
452
+
453
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
454
+
455
+ </div>
456
+ </div>
457
+
458
+ <div id="attribute-i-mutate_gene_disable_prob" class="method-detail">
459
+ <div class="method-heading attribute-method-heading">
460
+ <span class="method-name">mutate_gene_disable_prob</span><span
461
+ class="attribute-access-type">[RW]</span>
462
+ </div>
463
+
464
+ <div class="method-description">
465
+
466
+
467
+
468
+ </div>
469
+ </div>
470
+
471
+ <div id="attribute-i-mutate_gene_reenable_prob" class="method-detail">
472
+ <div class="method-heading attribute-method-heading">
473
+ <span class="method-name">mutate_gene_reenable_prob</span><span
474
+ class="attribute-access-type">[RW]</span>
475
+ </div>
476
+
477
+ <div class="method-description">
478
+
479
+
480
+
481
+ </div>
482
+ </div>
483
+
484
+ <div id="attribute-i-mutate_gene_trait_prob" class="method-detail">
485
+ <div class="method-heading attribute-method-heading">
486
+ <span class="method-name">mutate_gene_trait_prob</span><span
487
+ class="attribute-access-type">[RW]</span>
488
+ </div>
489
+
490
+ <div class="method-description">
491
+
492
+
493
+
494
+ </div>
495
+ </div>
496
+
497
+ <div id="attribute-i-mutate_neuron_trait_prob" class="method-detail">
498
+ <div class="method-heading attribute-method-heading">
499
+ <span class="method-name">mutate_neuron_trait_prob</span><span
500
+ class="attribute-access-type">[RW]</span>
501
+ </div>
502
+
503
+ <div class="method-description">
504
+
505
+
506
+
507
+ </div>
508
+ </div>
509
+
510
+ <div id="attribute-i-mutate_only_prob" class="method-detail">
511
+ <div class="method-heading attribute-method-heading">
512
+ <span class="method-name">mutate_only_prob</span><span
513
+ class="attribute-access-type">[RW]</span>
514
+ </div>
515
+
516
+ <div class="method-description">
517
+
518
+
519
+
520
+ </div>
521
+ </div>
522
+
523
+ <div id="attribute-i-mutate_perturb_gene_weights_prob" class="method-detail">
524
+ <div class="method-heading attribute-method-heading">
525
+ <span class="method-name">mutate_perturb_gene_weights_prob</span><span
526
+ class="attribute-access-type">[RW]</span>
527
+ </div>
528
+
529
+ <div class="method-description">
530
+
531
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
532
+
533
+ </div>
534
+ </div>
535
+
536
+ <div id="attribute-i-mutate_perturb_gene_weights_sd" class="method-detail">
537
+ <div class="method-heading attribute-method-heading">
538
+ <span class="method-name">mutate_perturb_gene_weights_sd</span><span
539
+ class="attribute-access-type">[RW]</span>
540
+ </div>
541
+
542
+ <div class="method-description">
543
+
544
+ <p>For gene weights perturbations and changes (complete overwrites)</p>
545
+
546
+ </div>
547
+ </div>
548
+
549
+ <div id="attribute-i-mutate_random_trait_prob" class="method-detail">
550
+ <div class="method-heading attribute-method-heading">
551
+ <span class="method-name">mutate_random_trait_prob</span><span
552
+ class="attribute-access-type">[RW]</span>
553
+ </div>
554
+
555
+ <div class="method-description">
556
+
557
+
558
+
559
+ </div>
560
+ </div>
561
+
562
+ <div id="attribute-i-mutate_toggle_enable_prob" class="method-detail">
563
+ <div class="method-heading attribute-method-heading">
564
+ <span class="method-name">mutate_toggle_enable_prob</span><span
565
+ class="attribute-access-type">[RW]</span>
566
+ </div>
567
+
568
+ <div class="method-description">
569
+
570
+
571
+
572
+ </div>
573
+ </div>
574
+
575
+ <div id="attribute-i-mutdiff_coefficient" class="method-detail">
576
+ <div class="method-heading attribute-method-heading">
577
+ <span class="method-name">mutdiff_coefficient</span><span
578
+ class="attribute-access-type">[RW]</span>
579
+ </div>
580
+
581
+ <div class="method-description">
582
+
583
+
584
+
585
+ </div>
586
+ </div>
587
+
588
+ <div id="attribute-i-neuron_trait_mut_sig" class="method-detail">
589
+ <div class="method-heading attribute-method-heading">
590
+ <span class="method-name">neuron_trait_mut_sig</span><span
591
+ class="attribute-access-type">[RW]</span>
592
+ </div>
593
+
594
+ <div class="method-description">
595
+
596
+
597
+
598
+ </div>
599
+ </div>
600
+
601
+ <div id="attribute-i-newlink_tries" class="method-detail">
602
+ <div class="method-heading attribute-method-heading">
603
+ <span class="method-name">newlink_tries</span><span
604
+ class="attribute-access-type">[RW]</span>
605
+ </div>
606
+
607
+ <div class="method-description">
608
+
609
+
610
+
611
+ </div>
612
+ </div>
613
+
614
+ <div id="attribute-i-population_size" class="method-detail">
615
+ <div class="method-heading attribute-method-heading">
616
+ <span class="method-name">population_size</span><span
617
+ class="attribute-access-type">[RW]</span>
618
+ </div>
619
+
620
+ <div class="method-description">
621
+
622
+ <p>If set, will start off at the specified size and grow to the bigger
623
+ population size</p>
624
+
625
+ </div>
626
+ </div>
627
+
628
+ <div id="attribute-i-print_every" class="method-detail">
629
+ <div class="method-heading attribute-method-heading">
630
+ <span class="method-name">print_every</span><span
631
+ class="attribute-access-type">[RW]</span>
632
+ </div>
633
+
634
+ <div class="method-description">
635
+
636
+
637
+
638
+ </div>
639
+ </div>
640
+
641
+ <div id="attribute-i-real_time_switch" class="method-detail">
642
+ <div class="method-heading attribute-method-heading">
643
+ <span class="method-name">real_time_switch</span><span
644
+ class="attribute-access-type">[RW]</span>
645
+ </div>
646
+
647
+ <div class="method-description">
648
+
649
+ <p>Enable RT-NEAT, for gradual evolution suitable for games and other
650
+ human-interactive systems.</p>
651
+
652
+ </div>
653
+ </div>
654
+
655
+ <div id="attribute-i-recur_only_prob" class="method-detail">
656
+ <div class="method-heading attribute-method-heading">
657
+ <span class="method-name">recur_only_prob</span><span
658
+ class="attribute-access-type">[RW]</span>
659
+ </div>
660
+
661
+ <div class="method-description">
662
+
663
+
664
+
665
+ </div>
666
+ </div>
667
+
668
+ <div id="attribute-i-recur_prob" class="method-detail">
669
+ <div class="method-heading attribute-method-heading">
670
+ <span class="method-name">recur_prob</span><span
671
+ class="attribute-access-type">[RW]</span>
672
+ </div>
673
+
674
+ <div class="method-description">
675
+
676
+
677
+
678
+ </div>
679
+ </div>
680
+
681
+ <div id="attribute-i-recurrency_switch" class="method-detail">
682
+ <div class="method-heading attribute-method-heading">
683
+ <span class="method-name">recurrency_switch</span><span
684
+ class="attribute-access-type">[RW]</span>
685
+ </div>
686
+
687
+ <div class="method-description">
688
+
689
+ <p>If true, allow for recurrent networks.</p>
690
+
691
+ </div>
692
+ </div>
693
+
694
+ <div id="attribute-i-smallest_species" class="method-detail">
695
+ <div class="method-heading attribute-method-heading">
696
+ <span class="method-name">smallest_species</span><span
697
+ class="attribute-access-type">[RW]</span>
698
+ </div>
699
+
700
+ <div class="method-description">
701
+
702
+ <p>Species smallest population allowed (coalse smaller species into one)</p>
703
+
704
+ </div>
705
+ </div>
706
+
707
+ <div id="attribute-i-start_population_size" class="method-detail">
708
+ <div class="method-heading attribute-method-heading">
709
+ <span class="method-name">start_population_size</span><span
710
+ class="attribute-access-type">[RW]</span>
711
+ </div>
712
+
713
+ <div class="method-description">
714
+
715
+ <p>If set, will start off at the specified size and grow to the bigger
716
+ population size</p>
717
+
718
+ </div>
719
+ </div>
720
+
721
+ <div id="attribute-i-start_sequence_at" class="method-detail">
722
+ <div class="method-heading attribute-method-heading">
723
+ <span class="method-name">start_sequence_at</span><span
724
+ class="attribute-access-type">[RW]</span>
725
+ </div>
726
+
727
+ <div class="method-description">
728
+
729
+
730
+
731
+ </div>
732
+ </div>
733
+
734
+ <div id="attribute-i-survival_mininum_per_species" class="method-detail">
735
+ <div class="method-heading attribute-method-heading">
736
+ <span class="method-name">survival_mininum_per_species</span><span
737
+ class="attribute-access-type">[RW]</span>
738
+ </div>
739
+
740
+ <div class="method-description">
741
+
742
+
743
+
744
+ </div>
745
+ </div>
746
+
747
+ <div id="attribute-i-survival_threshold" class="method-detail">
748
+ <div class="method-heading attribute-method-heading">
749
+ <span class="method-name">survival_threshold</span><span
750
+ class="attribute-access-type">[RW]</span>
751
+ </div>
752
+
753
+ <div class="method-description">
754
+
755
+ <p>factor (0 to 1) of the top percentage of the species that&#39;s allowed to
756
+ mate.</p>
757
+
758
+ </div>
759
+ </div>
760
+
761
+ <div id="attribute-i-trait_mutation_power" class="method-detail">
762
+ <div class="method-heading attribute-method-heading">
763
+ <span class="method-name">trait_mutation_power</span><span
764
+ class="attribute-access-type">[RW]</span>
765
+ </div>
766
+
767
+ <div class="method-description">
768
+
769
+
770
+
771
+ </div>
772
+ </div>
773
+
774
+ <div id="attribute-i-trait_param_mut_prob" class="method-detail">
775
+ <div class="method-heading attribute-method-heading">
776
+ <span class="method-name">trait_param_mut_prob</span><span
777
+ class="attribute-access-type">[RW]</span>
778
+ </div>
779
+
780
+ <div class="method-description">
781
+
782
+
783
+
784
+ </div>
785
+ </div>
786
+
787
+ <div id="attribute-i-weigh_mut_power" class="method-detail">
788
+ <div class="method-heading attribute-method-heading">
789
+ <span class="method-name">weigh_mut_power</span><span
790
+ class="attribute-access-type">[RW]</span>
791
+ </div>
792
+
793
+ <div class="method-description">
794
+
795
+
796
+
797
+ </div>
798
+ </div>
799
+
800
+ <div id="attribute-i-weight_coefficient" class="method-detail">
801
+ <div class="method-heading attribute-method-heading">
802
+ <span class="method-name">weight_coefficient</span><span
803
+ class="attribute-access-type">[RW]</span>
804
+ </div>
805
+
806
+ <div class="method-description">
807
+
808
+ <p>Speciation coffficient</p>
809
+
810
+ </div>
811
+ </div>
812
+
813
+ </section>
814
+
815
+
816
+
817
+ <section id="public-class-5Buntitled-5D-method-details" class="method-section">
818
+ <header>
819
+ <h3>Public Class Methods</h3>
820
+ </header>
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+
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+
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+ <div id="method-c-new" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">new</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Set up defaults for mandatory entries.</p>
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+
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+
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+ <div class="method-calls-super">
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+ Calls superclass method
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+ <a href="../NeatOb.html#method-c-new">NEAT::NeatOb.new</a>
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+ </div>
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+
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+
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+
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+ <div class="method-source-code" id="new-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 318</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>
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+ <span class="ruby-keyword">super</span>
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+ <span class="ruby-ivar">@start_sequence_at</span> = <span class="ruby-value">0</span>
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+ <span class="ruby-ivar">@end_sequence_at</span> = <span class="ruby-value">100</span>
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+ <span class="ruby-ivar">@max_generations</span> = <span class="ruby-value">1000</span>
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+
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+ <span class="ruby-comment"># Default operators</span>
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+ <span class="ruby-ivar">@evaluator</span> = <span class="ruby-constant">Evaluator</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-ivar">@expressor</span> = <span class="ruby-constant">Expressor</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-ivar">@evolver</span> = <span class="ruby-constant">Evolver</span>.<span class="ruby-identifier">new</span> <span class="ruby-keyword">self</span>
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ </section>
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+
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+ </section>
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+ </main>
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+
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+
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+ <footer id="validator-badges" role="contentinfo">
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+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+