rubyneat 0.3.5.alpha.2

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  1. checksums.yaml +7 -0
  2. data/.directory +4 -0
  3. data/.gitignore.orig +20 -0
  4. data/.idea/.name +1 -0
  5. data/.idea/.rakeTasks +7 -0
  6. data/.idea/dictionaries/trader.xml +3 -0
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  10. data/.idea/rubyneat.iml +197 -0
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  12. data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
  13. data/.idea/runConfigurations/xor_neat.xml +26 -0
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  30. data/config/application.rb +5 -0
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  35. data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
  36. data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
  37. data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
  38. data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
  39. data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
  40. data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
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  50. data/doc/NEAT/Evolver/CritterOp.html +551 -0
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  52. data/doc/NEAT/Expressor.html +327 -0
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  58. data/doc/NEAT/Neuron.html +1067 -0
  59. data/doc/NEAT/Operator.html +162 -0
  60. data/doc/NEAT/Population.html +1961 -0
  61. data/doc/NEAT/Trait.html +169 -0
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  64. data/doc/class_list.html +54 -0
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  71. data/doc/js/app.js +219 -0
  72. data/doc/js/full_list.js +178 -0
  73. data/doc/js/jquery.js +4 -0
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  78. data/foo/foo_rubygoo.rb +104 -0
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  81. data/lib/rubyneat/critter.rb +374 -0
  82. data/lib/rubyneat/default_neat.rb +10 -0
  83. data/lib/rubyneat/dsl.rb +130 -0
  84. data/lib/rubyneat/evaluator.rb +51 -0
  85. data/lib/rubyneat/evolver.rb +315 -0
  86. data/lib/rubyneat/expressor.rb +110 -0
  87. data/lib/rubyneat/graph.rb +95 -0
  88. data/lib/rubyneat/neuron.rb +152 -0
  89. data/lib/rubyneat/population.rb +227 -0
  90. data/lib/rubyneat/rubyneat.rb +429 -0
  91. data/lib/rubyneat.rb +8 -0
  92. data/neater/invpend_neat.rb +150 -0
  93. data/neater/rnlib/inverted_pendulum.rb +380 -0
  94. data/neater/rnlib/xor.rb +10 -0
  95. data/neater/sigdebug_neat.rb +136 -0
  96. data/neater/xor_neat.rb +137 -0
  97. data/neater/xoranalog_neat.rb +138 -0
  98. data/neater/xorsin_neat.rb +143 -0
  99. data/projectFilesBackup/.idea/rubyneat.iml +180 -0
  100. data/public/.directory +4 -0
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  127. data/rdoc/InvertedPendulum/DSL.html +259 -0
  128. data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
  129. data/rdoc/InvertedPendulum.html +198 -0
  130. data/rdoc/Logger.html +98 -0
  131. data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
  132. data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
  133. data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
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  135. data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
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  141. data/rdoc/NEAT/Critter/Genotype.html +735 -0
  142. data/rdoc/NEAT/Critter/Phenotype.html +330 -0
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  146. data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
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  148. data/rdoc/NEAT/Expressor.html +402 -0
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  151. data/rdoc/NEAT/Graph.html +263 -0
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  153. data/rdoc/NEAT/NeatOb.html +325 -0
  154. data/rdoc/NEAT/Neuron.html +481 -0
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  157. data/rdoc/NEAT/Trait.html +117 -0
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  159. data/rdoc/Object.html +384 -0
  160. data/rdoc/Phi.html +98 -0
  161. data/rdoc/Player.html +383 -0
  162. data/rdoc/Rakefile.html +254 -0
  163. data/rdoc/RubyNEAT/Application.html +105 -0
  164. data/rdoc/RubyNEAT.html +98 -0
  165. data/rdoc/SDL/Event2.html +98 -0
  166. data/rdoc/SDL.html +98 -0
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  175. data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
  176. data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
  177. data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
  178. data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
  179. data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
  180. data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
  181. data/rdoc/doc/NEAT/Controller_html.html +2212 -0
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  189. data/rdoc/doc/NEAT/Evolver_html.html +677 -0
  190. data/rdoc/doc/NEAT/Expressor_html.html +468 -0
  191. data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
  192. data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
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  194. data/rdoc/doc/NEAT/NeatException_html.html +299 -0
  195. data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
  196. data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
  197. data/rdoc/doc/NEAT/Operator_html.html +337 -0
  198. data/rdoc/doc/NEAT/Population_html.html +1795 -0
  199. data/rdoc/doc/NEAT/Trait_html.html +344 -0
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  260. data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
  261. metadata +555 -0
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+ <!DOCTYPE html>
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+
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>class NEAT::Trait - rubyneat 0.3.4</title>
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+
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+ <link href="../fonts.css" rel="stylesheet">
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+ <link href="../rdoc.css" rel="stylesheet">
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "../";
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+ </script>
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+ <script src="../js/jquery.js"></script>
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+ <script src="../js/navigation.js"></script>
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+ <script src="../js/search_index.js"></script>
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+ <script src="../js/search.js"></script>
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+ <script src="../js/searcher.js"></script>
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+ <script src="../js/darkfish.js"></script>
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+ <body id="top" role="document" class="class">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="../index.html" rel="home">Home</a>
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+ </h2>
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+ <div id="table-of-contents-navigation">
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+ <a href="../table_of_contents.html#pages">Pages</a>
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+ <a href="../table_of_contents.html#classes">Classes</a>
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+ <a href="../table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ </div>
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+ <div id="class-metadata">
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+ <div id="parent-class-section" class="nav-section">
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+ <h3>Parent</h3>
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+
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+ <p class="link"><a href="NeatOb.html">NEAT::NeatOb</a>
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+
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+ </div>
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="class-NEAT::Trait">
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+ <h1 id="class-NEAT::Trait" class="class">
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+ class NEAT::Trait
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+ </h1>
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+
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+ <section class="description">
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+
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+ <h1 id="class-NEAT::Trait-label-Traits">Traits<span><a href="#class-NEAT::Trait-label-Traits">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <pre>A Trait is a group of parameters that can be expressed
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+ as a group more than one time. Traits save a genetic
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+ algorithm from having to search vast parameter landscapes
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+ on every node. Instead, each node can simply point to a trait
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+ and those traits can evolve on their own. (Taken from the C version of NEAT)
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+
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+ Since we wish to allow for different classes of Neurons, this trait idea is
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+ super, since all we need to do is have a different trait species for the
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+ different node types.</pre>
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+ </section>
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+ <footer id="validator-badges" role="contentinfo">
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+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+
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+ <title>module NEAT - rubyneat 0.3.4</title>
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+ <link href="./fonts.css" rel="stylesheet">
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+ <link href="./rdoc.css" rel="stylesheet">
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+ <script type="text/javascript">
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+ var rdoc_rel_prefix = "./";
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+ </script>
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+ <script src="./js/jquery.js"></script>
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+ <script src="./js/navigation.js"></script>
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+ <script src="./js/search_index.js"></script>
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+ <script src="./js/search.js"></script>
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+ <script src="./js/searcher.js"></script>
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+ <script src="./js/darkfish.js"></script>
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+
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+
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+ <body id="top" role="document" class="module">
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+ <nav role="navigation">
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+ <div id="project-navigation">
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+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
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+ <h2>
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+ <a href="./index.html" rel="home">Home</a>
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+ </h2>
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+ <div id="table-of-contents-navigation">
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+ <a href="./table_of_contents.html#pages">Pages</a>
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+ <a href="./table_of_contents.html#classes">Classes</a>
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+ <a href="./table_of_contents.html#methods">Methods</a>
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+ </div>
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+ </div>
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+
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+ <div id="search-section" role="search" class="project-section initially-hidden">
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+ <form action="#" method="get" accept-charset="utf-8">
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+ <div id="search-field-wrapper">
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+ <input id="search-field" role="combobox" aria-label="Search"
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+ aria-autocomplete="list" aria-controls="search-results"
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+ type="text" name="search" placeholder="Search" spellcheck="false"
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+ title="Type to search, Up and Down to navigate, Enter to load">
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+ </div>
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+
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+ <ul id="search-results" aria-label="Search Results"
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+ aria-busy="false" aria-expanded="false"
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+ aria-atomic="false" class="initially-hidden"></ul>
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+ </form>
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+ </div>
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+ </div>
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+ <div class="nav-section">
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+ <h3>Table of Contents</h3>
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+
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+ <ul class="link-list" role="directory">
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+ <li><a href="#module-NEAT-label-Critter">Critter</a>
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+ <li><a href="#module-NEAT-label-RubyNEAT+DSL">RubyNEAT DSL</a>
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+ <li><a href="#module-NEAT-label-Neuron+Types">Neuron Types</a>
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+ <li><a href="#module-NEAT-label-NEAT+--+Module+for+RubyNEAT.">NEAT – Module for RubyNEAT.</a>
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+ <li><a href="#module-NEAT-label-Synopsis">Synopsis</a>
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+ <li><a href="#module-NEAT-label-Issues">Issues</a>
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+ <li><a href="#module-NEAT-label-Multicore+%2F+Cloud+Computing">Multicore / Cloud Computing</a>
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+ </ul>
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+ </div>
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+
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+
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+ <div id="class-metadata">
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+
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+
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+
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+
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="nav-section">
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+ <h3>Methods</h3>
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+
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+ <ul class="link-list" role="directory">
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+
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+ <li ><a href="#method-c-controller">::controller</a>
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+
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+ <li ><a href="#method-c-controller-3D">::controller=</a>
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+
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+ <li ><a href="#method-c-create_controller">::create_controller</a>
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+
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+ <li ><a href="#method-c-dpp">::dpp</a>
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+
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+ <li ><a href="#method-c-gaussian">::gaussian</a>
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+
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+ <li ><a href="#method-c-new_innovation">::new_innovation</a>
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+
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+ <li ><a href="#method-c-random_name_generator">::random_name_generator</a>
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+
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+ </ul>
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+ </div>
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+
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+ </div>
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+ </nav>
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+
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+ <main role="main" aria-labelledby="module-NEAT">
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+ <h1 id="module-NEAT" class="module">
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+ module NEAT
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+ </h1>
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+
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+ <section class="description">
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+
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+ <h1 id="module-NEAT-label-Critter"><a href="NEAT/Critter.html">Critter</a><span><a href="#module-NEAT-label-Critter">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <h1 id="module-NEAT-label-RubyNEAT+DSL"><a href="RubyNEAT.html">RubyNEAT</a> <a href="NEAT/DSL.html">DSL</a><span><a href="#module-NEAT-label-RubyNEAT+DSL">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <p><a href="NEAT/DSL.html">DSL</a> is a domain-specific language for <a
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+ href="RubyNEAT.html">RubyNEAT</a> to allow you to configure the <a
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+ href="NEAT.html">NEAT</a> engine for various evolutionary projects.</p>
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+
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+ <h1 id="module-NEAT-label-Neuron+Types"><a href="NEAT/Neuron.html">Neuron</a> Types<span><a href="#module-NEAT-label-Neuron+Types">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <p>We create all the neuron types for this system here.</p>
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+
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+ <h1 id="module-NEAT-label-NEAT+--+Module+for+RubyNEAT."><a href="NEAT.html">NEAT</a> – Module for <a href="RubyNEAT.html">RubyNEAT</a>.<span><a href="#module-NEAT-label-NEAT+--+Module+for+RubyNEAT.">&para;</a> <a href="#documentation">&uarr;</a></span></h1>
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+
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+ <h2 id="module-NEAT-label-Synopsis">Synopsis<span><a href="#module-NEAT-label-Synopsis">&para;</a> <a href="#documentation">&uarr;</a></span></h2>
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+
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+ <p>We have a <a href="NEAT/Population.html">Population</a> of Critters, and
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+ each <a href="NEAT/Critter.html">Critter</a> represents a network of
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+ Neurons and a connection list specifying how those Neurons are connected.</p>
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+
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+ <p>Each <a href="NEAT/Neuron.html">Neuron</a> has an inplicit genotype and
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+ phenotype component. Neurons, from the Ruby persoective, contain their own
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+ code to produce their own phenotypes.</p>
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+
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+ <p>There are input Neurons and output Neurons. The input Neurons are special,
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+ as they do not contain any input from other nodes, but serve as interfaces
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+ from the “real world”. Thier range of inputs are open, and it shall be up
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+ to the input Neuron&#39;s phenotype generators to condition those inputs,
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+ if need be, to someething more suiable for the neural network.</p>
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+
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+ <h2 id="module-NEAT-label-Issues">Issues<span><a href="#module-NEAT-label-Issues">&para;</a> <a href="#documentation">&uarr;</a></span></h2>
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+
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+ <h3 id="module-NEAT-label-Multicore+%2F+Cloud+Computing">Multicore / Cloud Computing<span><a href="#module-NEAT-label-Multicore+%2F+Cloud+Computing">&para;</a> <a href="#documentation">&uarr;</a></span></h3>
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+
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+ <p>Some thought needs to be given to how to make this anenable to multiple
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+ processes so that we can leverage the power of multicore systems as well as
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+ multiple computers in the Cloud, etc.</p>
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+
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+ <p>Our initial inclination is to put all of that functionality in the
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+ Conroller.</p>
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+
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+ </section>
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+
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+
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+
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+
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+ <section id="5Buntitled-5D" class="documentation-section">
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+
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+
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+
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+
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+
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+ <section class="constants-list">
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+ <header>
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+ <h3>Constants</h3>
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+ </header>
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+ <dl>
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+
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+ <dt id="STIMULUS">STIMULUS
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+
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+ <dd><p>Name of the stimulus method in <a
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+ href="NEAT/Critter/Phenotype.html">NEAT::Critter::Phenotype</a> to use for
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+ the singleton method expression of the critter.</p>
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+
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+
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+ </dl>
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+ </section>
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+
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+
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+
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+
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+
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+ <section id="public-class-5Buntitled-5D-method-details" class="method-section">
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+ <header>
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+ <h3>Public Class Methods</h3>
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+ </header>
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+
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+
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+ <div id="method-c-controller" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">controller</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+
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+ <div class="method-source-code" id="controller-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 422</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">controller</span> ; <span class="ruby-ivar">@controller</span> ; <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-controller-3D" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">controller=</span><span
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+ class="method-args">(controller)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+
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+ <div class="method-source-code" id="controller-3D-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 423</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">controller=</span>(<span class="ruby-identifier">controller</span>) ; <span class="ruby-ivar">@controller</span> = <span class="ruby-identifier">controller</span> ; <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-create_controller" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">create_controller</span><span
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+ class="method-args">(*parms)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+
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+ <div class="method-source-code" id="create_controller-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 424</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">create_controller</span>(<span class="ruby-operator">*</span><span class="ruby-identifier">parms</span>); <span class="ruby-ivar">@controller</span> = <span class="ruby-constant">Controller</span>.<span class="ruby-identifier">new</span>(<span class="ruby-operator">*</span><span class="ruby-identifier">parms</span>); <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-dpp" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">dpp</span><span
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+ class="method-args">(ob)</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>PrettyPrint to log.debug</p>
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+
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+
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+
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+
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+ <div class="method-source-code" id="dpp-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 77</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">dpp</span> <span class="ruby-identifier">ob</span>
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+ <span class="ruby-comment">#$log.ap ob</span>
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-gaussian" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">gaussian</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Mixin for the gaussian object.</p>
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+
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+
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+
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+
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+ <div class="method-source-code" id="gaussian-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 74</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">gaussian</span> ; <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">gaussian</span>; <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-new_innovation" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">new_innovation</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Mixin for new innovation numbers.</p>
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+
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+
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+
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+
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+ <div class="method-source-code" id="new_innovation-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 71</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">new_innovation</span>; <span class="ruby-ivar">@controller</span>.<span class="ruby-identifier">new_innovation</span>; <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ <div id="method-c-random_name_generator" class="method-detail ">
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+
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+ <div class="method-heading">
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+ <span class="method-name">random_name_generator</span><span
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+ class="method-args">()</span>
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+
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+ <span class="method-click-advice">click to toggle source</span>
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+
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+
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+ <div class="method-source-code" id="random_name_generator-source">
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+ <pre><span class="ruby-comment"># File lib/rubyneat/rubyneat.rb, line 60</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-keyword">self</span>.<span class="ruby-identifier">random_name_generator</span>
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+ (<span class="ruby-value">1</span><span class="ruby-operator">..</span><span class="ruby-value">3</span>).<span class="ruby-identifier">map</span> {
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+ <span class="ruby-ivar">@rng_names</span>[<span class="ruby-identifier">rand</span> <span class="ruby-ivar">@rng_names</span>.<span class="ruby-identifier">size</span>]
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+ }.<span class="ruby-identifier">push</span>(<span class="ruby-ivar">@rng_count</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>).<span class="ruby-identifier">join</span>(<span class="ruby-string">&#39;_&#39;</span>).<span class="ruby-identifier">to_sym</span>
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+ <span class="ruby-keyword">end</span></pre>
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+ </div>
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+
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+ </div>
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+
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+
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+
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+
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+ </div>
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+
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+
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+ </section>
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+
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+ </section>
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+ </main>
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+
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+
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+ <footer id="validator-badges" role="contentinfo">
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+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
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+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
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+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
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+ </footer>
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+