rubyneat 0.3.5.alpha.2
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<span class="summary_desc"><div class='inline'>
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<p>list of critter in this population.</p>
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<a href="#fitness-instance_method" title="#fitness (instance method)">- (Object) <strong>fitness</strong> </a>
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<span class="note title readonly">readonly</span>
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<p>Overall population fitness and novelty.</p>
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<a href="#hidden_neurons-instance_method" title="#hidden_neurons (instance method)">- (Object) <strong>hidden_neurons</strong> </a>
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<span class="summary_desc"><div class='inline'>
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<p>List of possible neuron classes for hidden neurons.</p>
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<span class="summary_signature">
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<a href="#input_neurons-instance_method" title="#input_neurons (instance method)">- (Object) <strong>input_neurons</strong> </a>
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<span class="summary_desc"><div class='inline'>
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<p>Ordered list or hash of input neuron classes (all critters generated here
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shall have this).</p>
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</div></span>
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<span class="summary_signature">
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<a href="#novelty-instance_method" title="#novelty (instance method)">- (Object) <strong>novelty</strong> </a>
|
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<span class="note title readonly">readonly</span>
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<span class="summary_desc"><div class='inline'>
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<p>Overall population fitness and novelty.</p>
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</div></span>
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</li>
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<li class="public ">
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<span class="summary_signature">
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|
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<a href="#output_neurons-instance_method" title="#output_neurons (instance method)">- (Object) <strong>output_neurons</strong> </a>
|
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|
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</span>
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|
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|
|
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|
+
<span class="summary_desc"><div class='inline'>
|
|
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|
+
<p>Ordered list or hash of output neuron classes (all critters generated here
|
|
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|
+
shall have this).</p>
|
|
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|
+
</div></span>
|
|
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|
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</li>
|
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|
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|
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<li class="public ">
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<span class="summary_signature">
|
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|
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<a href="#species-instance_method" title="#species (instance method)">- (Object) <strong>species</strong> </a>
|
|
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|
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|
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|
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</span>
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|
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|
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|
|
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|
+
<span class="note title readonly">readonly</span>
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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+
|
|
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|
+
|
|
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|
+
<span class="summary_desc"><div class='inline'>
|
|
317
|
+
<p>Hash list of species lists.</p>
|
|
318
|
+
</div></span>
|
|
319
|
+
|
|
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|
+
</li>
|
|
321
|
+
|
|
322
|
+
|
|
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|
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<li class="public ">
|
|
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|
+
<span class="summary_signature">
|
|
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|
+
|
|
326
|
+
<a href="#traits-instance_method" title="#traits (instance method)">- (Object) <strong>traits</strong> </a>
|
|
327
|
+
|
|
328
|
+
|
|
329
|
+
|
|
330
|
+
</span>
|
|
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|
+
|
|
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|
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|
|
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|
+
|
|
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|
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|
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|
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|
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|
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|
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|
+
|
|
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|
+
|
|
341
|
+
|
|
342
|
+
|
|
343
|
+
<span class="summary_desc"><div class='inline'>
|
|
344
|
+
<p>Returns the value of attribute traits.</p>
|
|
345
|
+
</div></span>
|
|
346
|
+
|
|
347
|
+
</li>
|
|
348
|
+
|
|
349
|
+
|
|
350
|
+
</ul>
|
|
351
|
+
|
|
352
|
+
|
|
353
|
+
|
|
354
|
+
|
|
355
|
+
|
|
356
|
+
<h3 class="inherited">Attributes inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
|
357
|
+
<p class="inherited"><span class='object_link'><a href="NeatOb.html#controller-instance_method" title="NEAT::NeatOb#controller (method)">#controller</a></span>, <span class='object_link'><a href="NeatOb.html#name-instance_method" title="NEAT::NeatOb#name (method)">#name</a></span></p>
|
|
358
|
+
|
|
359
|
+
|
|
360
|
+
|
|
361
|
+
<h2>
|
|
362
|
+
Class Method Summary
|
|
363
|
+
<small>(<a href="#" class="summary_toggle">collapse</a>)</small>
|
|
364
|
+
</h2>
|
|
365
|
+
|
|
366
|
+
<ul class="summary">
|
|
367
|
+
|
|
368
|
+
<li class="public ">
|
|
369
|
+
<span class="summary_signature">
|
|
370
|
+
|
|
371
|
+
<a href="#compactify%21-class_method" title="compactify! (class method)">+ (Object) <strong>compactify!</strong>(parm) </a>
|
|
372
|
+
|
|
373
|
+
|
|
374
|
+
|
|
375
|
+
</span>
|
|
376
|
+
|
|
377
|
+
|
|
378
|
+
|
|
379
|
+
|
|
380
|
+
|
|
381
|
+
|
|
382
|
+
|
|
383
|
+
|
|
384
|
+
|
|
385
|
+
<span class="summary_desc"><div class='inline'></div></span>
|
|
386
|
+
|
|
387
|
+
</li>
|
|
388
|
+
|
|
389
|
+
|
|
390
|
+
<li class="public ">
|
|
391
|
+
<span class="summary_signature">
|
|
392
|
+
|
|
393
|
+
<a href="#evaluate%21-class_method" title="evaluate! (class method)">+ (Object) <strong>evaluate!</strong> </a>
|
|
394
|
+
|
|
395
|
+
|
|
396
|
+
|
|
397
|
+
</span>
|
|
398
|
+
|
|
399
|
+
|
|
400
|
+
|
|
401
|
+
|
|
402
|
+
|
|
403
|
+
|
|
404
|
+
|
|
405
|
+
|
|
406
|
+
|
|
407
|
+
<span class="summary_desc"><div class='inline'></div></span>
|
|
408
|
+
|
|
409
|
+
</li>
|
|
410
|
+
|
|
411
|
+
|
|
412
|
+
<li class="public ">
|
|
413
|
+
<span class="summary_signature">
|
|
414
|
+
|
|
415
|
+
<a href="#member%3F-class_method" title="member? (class method)">+ (Boolean) <strong>member?</strong>(crit) </a>
|
|
416
|
+
|
|
417
|
+
|
|
418
|
+
|
|
419
|
+
</span>
|
|
420
|
+
|
|
421
|
+
|
|
422
|
+
|
|
423
|
+
|
|
424
|
+
|
|
425
|
+
|
|
426
|
+
|
|
427
|
+
|
|
428
|
+
|
|
429
|
+
<span class="summary_desc"><div class='inline'>
|
|
430
|
+
<p>lists keyed by representative critter.</p>
|
|
431
|
+
</div></span>
|
|
432
|
+
|
|
433
|
+
</li>
|
|
434
|
+
|
|
435
|
+
|
|
436
|
+
</ul>
|
|
437
|
+
|
|
438
|
+
<h2>
|
|
439
|
+
Instance Method Summary
|
|
440
|
+
<small>(<a href="#" class="summary_toggle">collapse</a>)</small>
|
|
441
|
+
</h2>
|
|
442
|
+
|
|
443
|
+
<ul class="summary">
|
|
444
|
+
|
|
445
|
+
<li class="public ">
|
|
446
|
+
<span class="summary_signature">
|
|
447
|
+
|
|
448
|
+
<a href="#analyze%21-instance_method" title="#analyze! (instance method)">- (Object) <strong>analyze!</strong> </a>
|
|
449
|
+
|
|
450
|
+
|
|
451
|
+
|
|
452
|
+
</span>
|
|
453
|
+
|
|
454
|
+
|
|
455
|
+
|
|
456
|
+
|
|
457
|
+
|
|
458
|
+
|
|
459
|
+
|
|
460
|
+
|
|
461
|
+
|
|
462
|
+
<span class="summary_desc"><div class='inline'>
|
|
463
|
+
<p>Alalyze evaluation results.</p>
|
|
464
|
+
</div></span>
|
|
465
|
+
|
|
466
|
+
</li>
|
|
467
|
+
|
|
468
|
+
|
|
469
|
+
<li class="public ">
|
|
470
|
+
<span class="summary_signature">
|
|
471
|
+
|
|
472
|
+
<a href="#best_critter-instance_method" title="#best_critter (instance method)">- (Object) <strong>best_critter</strong> </a>
|
|
473
|
+
|
|
474
|
+
|
|
475
|
+
|
|
476
|
+
</span>
|
|
477
|
+
|
|
478
|
+
|
|
479
|
+
|
|
480
|
+
|
|
481
|
+
|
|
482
|
+
|
|
483
|
+
|
|
484
|
+
|
|
485
|
+
|
|
486
|
+
<span class="summary_desc"><div class='inline'>
|
|
487
|
+
<p>The “best critter” is the critter with the lowest (closet to zero) fitness
|
|
488
|
+
rating.</p>
|
|
489
|
+
</div></span>
|
|
490
|
+
|
|
491
|
+
</li>
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
<li class="public ">
|
|
495
|
+
<span class="summary_signature">
|
|
496
|
+
|
|
497
|
+
<a href="#dump_s-instance_method" title="#dump_s (instance method)">- (Object) <strong>dump_s</strong> </a>
|
|
498
|
+
|
|
499
|
+
|
|
500
|
+
|
|
501
|
+
</span>
|
|
502
|
+
|
|
503
|
+
|
|
504
|
+
|
|
505
|
+
|
|
506
|
+
|
|
507
|
+
|
|
508
|
+
|
|
509
|
+
|
|
510
|
+
|
|
511
|
+
<span class="summary_desc"><div class='inline'></div></span>
|
|
512
|
+
|
|
513
|
+
</li>
|
|
514
|
+
|
|
515
|
+
|
|
516
|
+
<li class="public ">
|
|
517
|
+
<span class="summary_signature">
|
|
518
|
+
|
|
519
|
+
<a href="#evaluate%21-instance_method" title="#evaluate! (instance method)">- (Object) <strong>evaluate!</strong> </a>
|
|
520
|
+
|
|
521
|
+
|
|
522
|
+
|
|
523
|
+
</span>
|
|
524
|
+
|
|
525
|
+
|
|
526
|
+
|
|
527
|
+
|
|
528
|
+
|
|
529
|
+
|
|
530
|
+
|
|
531
|
+
|
|
532
|
+
|
|
533
|
+
<span class="summary_desc"><div class='inline'>
|
|
534
|
+
<p>Called for each sequence.</p>
|
|
535
|
+
</div></span>
|
|
536
|
+
|
|
537
|
+
</li>
|
|
538
|
+
|
|
539
|
+
|
|
540
|
+
<li class="public ">
|
|
541
|
+
<span class="summary_signature">
|
|
542
|
+
|
|
543
|
+
<a href="#evolve-instance_method" title="#evolve (instance method)">- (Object) <strong>evolve</strong> </a>
|
|
544
|
+
|
|
545
|
+
|
|
546
|
+
|
|
547
|
+
</span>
|
|
548
|
+
|
|
549
|
+
|
|
550
|
+
|
|
551
|
+
|
|
552
|
+
|
|
553
|
+
|
|
554
|
+
|
|
555
|
+
|
|
556
|
+
|
|
557
|
+
<span class="summary_desc"><div class='inline'>
|
|
558
|
+
<p>Call this after evaluation.</p>
|
|
559
|
+
</div></span>
|
|
560
|
+
|
|
561
|
+
</li>
|
|
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|
+
|
|
563
|
+
|
|
564
|
+
<li class="public ">
|
|
565
|
+
<span class="summary_signature">
|
|
566
|
+
|
|
567
|
+
<a href="#express%21-instance_method" title="#express! (instance method)">- (Object) <strong>express!</strong> </a>
|
|
568
|
+
|
|
569
|
+
|
|
570
|
+
|
|
571
|
+
</span>
|
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+
|
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+
|
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|
+
|
|
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+
|
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+
|
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+
|
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|
+
|
|
579
|
+
|
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580
|
+
|
|
581
|
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<span class="summary_desc"><div class='inline'>
|
|
582
|
+
<p>Express the entire population.</p>
|
|
583
|
+
</div></span>
|
|
584
|
+
|
|
585
|
+
</li>
|
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+
|
|
587
|
+
|
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|
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<li class="public ">
|
|
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|
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<span class="summary_signature">
|
|
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|
+
|
|
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|
+
<a href="#initialize-instance_method" title="#initialize (instance method)">- (Population) <strong>initialize</strong>(c, &block) </a>
|
|
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|
+
|
|
593
|
+
|
|
594
|
+
|
|
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|
+
</span>
|
|
596
|
+
|
|
597
|
+
|
|
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|
+
<span class="note title constructor">constructor</span>
|
|
599
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+
|
|
600
|
+
|
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|
+
|
|
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|
+
|
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+
|
|
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|
+
|
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|
+
|
|
606
|
+
|
|
607
|
+
<span class="summary_desc"><div class='inline'>
|
|
608
|
+
<p>Create initial (ramdom) population of critters.</p>
|
|
609
|
+
</div></span>
|
|
610
|
+
|
|
611
|
+
</li>
|
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|
+
|
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613
|
+
|
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614
|
+
<li class="public ">
|
|
615
|
+
<span class="summary_signature">
|
|
616
|
+
|
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|
+
<a href="#initialize_for_recurrence%21-instance_method" title="#initialize_for_recurrence! (instance method)">- (Object) <strong>initialize_for_recurrence!</strong> </a>
|
|
618
|
+
|
|
619
|
+
|
|
620
|
+
|
|
621
|
+
</span>
|
|
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|
+
|
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623
|
+
|
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+
|
|
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|
+
|
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|
+
|
|
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+
|
|
628
|
+
|
|
629
|
+
|
|
630
|
+
|
|
631
|
+
<span class="summary_desc"><div class='inline'>
|
|
632
|
+
<p>Make sure all critters are reset and prepared for recurrent network
|
|
633
|
+
evaluation.</p>
|
|
634
|
+
</div></span>
|
|
635
|
+
|
|
636
|
+
</li>
|
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|
+
|
|
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|
+
|
|
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|
+
<li class="public ">
|
|
640
|
+
<span class="summary_signature">
|
|
641
|
+
|
|
642
|
+
<a href="#mutate%21-instance_method" title="#mutate! (instance method)">- (Object) <strong>mutate!</strong> </a>
|
|
643
|
+
|
|
644
|
+
|
|
645
|
+
|
|
646
|
+
</span>
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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+
|
|
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|
+
|
|
654
|
+
|
|
655
|
+
|
|
656
|
+
<span class="summary_desc"><div class='inline'>
|
|
657
|
+
<p>Mutate the genes and neurons.</p>
|
|
658
|
+
</div></span>
|
|
659
|
+
|
|
660
|
+
</li>
|
|
661
|
+
|
|
662
|
+
|
|
663
|
+
<li class="public ">
|
|
664
|
+
<span class="summary_signature">
|
|
665
|
+
|
|
666
|
+
<a href="#report-instance_method" title="#report (instance method)">- (Object) <strong>report</strong> </a>
|
|
667
|
+
|
|
668
|
+
|
|
669
|
+
|
|
670
|
+
</span>
|
|
671
|
+
|
|
672
|
+
|
|
673
|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
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|
+
|
|
678
|
+
|
|
679
|
+
|
|
680
|
+
<span class="summary_desc"><div class='inline'>
|
|
681
|
+
<h2 id="label-Generate+a+report+on+the+state+of+this+population.">Generate a report on the state of this population.</h2>
|
|
682
|
+
</div></span>
|
|
683
|
+
|
|
684
|
+
</li>
|
|
685
|
+
|
|
686
|
+
|
|
687
|
+
<li class="public ">
|
|
688
|
+
<span class="summary_signature">
|
|
689
|
+
|
|
690
|
+
<a href="#speciate%21-instance_method" title="#speciate! (instance method)">- (Object) <strong>speciate!</strong> </a>
|
|
691
|
+
|
|
692
|
+
|
|
693
|
+
|
|
694
|
+
</span>
|
|
695
|
+
|
|
696
|
+
|
|
697
|
+
|
|
698
|
+
|
|
699
|
+
|
|
700
|
+
|
|
701
|
+
|
|
702
|
+
|
|
703
|
+
|
|
704
|
+
<span class="summary_desc"><div class='inline'>
|
|
705
|
+
<p>Group critters into species Note that the @species objects have useful
|
|
706
|
+
singleton methods: * @species.member? – checks all of the lists for
|
|
707
|
+
membership, not just the hash * @<a href="crit">species</a>.fitness –
|
|
708
|
+
fitness of the entire species.</p>
|
|
709
|
+
</div></span>
|
|
710
|
+
|
|
711
|
+
</li>
|
|
712
|
+
|
|
713
|
+
|
|
714
|
+
<li class="public ">
|
|
715
|
+
<span class="summary_signature">
|
|
716
|
+
|
|
717
|
+
<a href="#worst_critter-instance_method" title="#worst_critter (instance method)">- (Object) <strong>worst_critter</strong> </a>
|
|
718
|
+
|
|
719
|
+
|
|
720
|
+
|
|
721
|
+
</span>
|
|
722
|
+
|
|
723
|
+
|
|
724
|
+
|
|
725
|
+
|
|
726
|
+
|
|
727
|
+
|
|
728
|
+
|
|
729
|
+
|
|
730
|
+
|
|
731
|
+
<span class="summary_desc"><div class='inline'>
|
|
732
|
+
<p>The “worst critter” is the critter with the highest (away from zero)
|
|
733
|
+
fitness rating.</p>
|
|
734
|
+
</div></span>
|
|
735
|
+
|
|
736
|
+
</li>
|
|
737
|
+
|
|
738
|
+
|
|
739
|
+
</ul>
|
|
740
|
+
|
|
741
|
+
|
|
742
|
+
|
|
743
|
+
|
|
744
|
+
|
|
745
|
+
|
|
746
|
+
|
|
747
|
+
|
|
748
|
+
|
|
749
|
+
|
|
750
|
+
|
|
751
|
+
<h3 class="inherited">Methods inherited from <span class='object_link'><a href="NeatOb.html" title="NEAT::NeatOb (class)">NeatOb</a></span></h3>
|
|
752
|
+
<p class="inherited"><span class='object_link'><a href="NeatOb.html#log-instance_method" title="NEAT::NeatOb#log (method)">#log</a></span>, <span class='object_link'><a href="NeatOb.html#log-class_method" title="NEAT::NeatOb.log (method)">log</a></span>, <span class='object_link'><a href="NeatOb.html#to_s-instance_method" title="NEAT::NeatOb#to_s (method)">#to_s</a></span></p>
|
|
753
|
+
|
|
754
|
+
<div id="constructor_details" class="method_details_list">
|
|
755
|
+
<h2>Constructor Details</h2>
|
|
756
|
+
|
|
757
|
+
<div class="method_details first">
|
|
758
|
+
<h3 class="signature first" id="initialize-instance_method">
|
|
759
|
+
|
|
760
|
+
- (<tt><span class='object_link'><a href="" title="NEAT::Population (class)">Population</a></span></tt>) <strong>initialize</strong>(c, &block)
|
|
761
|
+
|
|
762
|
+
|
|
763
|
+
|
|
764
|
+
|
|
765
|
+
|
|
766
|
+
</h3><div class="docstring">
|
|
767
|
+
<div class="discussion">
|
|
768
|
+
|
|
769
|
+
<p>Create initial (ramdom) population of critters</p>
|
|
770
|
+
|
|
771
|
+
|
|
772
|
+
</div>
|
|
773
|
+
</div>
|
|
774
|
+
<div class="tags">
|
|
775
|
+
|
|
776
|
+
|
|
777
|
+
</div><table class="source_code">
|
|
778
|
+
<tr>
|
|
779
|
+
<td>
|
|
780
|
+
<pre class="lines">
|
|
781
|
+
|
|
782
|
+
|
|
783
|
+
37
|
|
784
|
+
38
|
|
785
|
+
39
|
|
786
|
+
40
|
|
787
|
+
41
|
|
788
|
+
42
|
|
789
|
+
43
|
|
790
|
+
44
|
|
791
|
+
45
|
|
792
|
+
46
|
|
793
|
+
47
|
|
794
|
+
48
|
|
795
|
+
49
|
|
796
|
+
50</pre>
|
|
797
|
+
</td>
|
|
798
|
+
<td>
|
|
799
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 37</span>
|
|
800
|
+
|
|
801
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize'>initialize</span><span class='lparen'>(</span><span class='id identifier rubyid_c'>c</span><span class='comma'>,</span> <span class='op'>&</span><span class='id identifier rubyid_block'>block</span><span class='rparen'>)</span>
|
|
802
|
+
<span class='kw'>super</span>
|
|
803
|
+
<span class='ivar'>@input_neurons</span> <span class='op'>=</span> <span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_neural_inputs'>neural_inputs</span><span class='period'>.</span><span class='id identifier rubyid_clone'>clone</span>
|
|
804
|
+
<span class='ivar'>@output_neurons</span> <span class='op'>=</span> <span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_neural_outputs'>neural_outputs</span><span class='period'>.</span><span class='id identifier rubyid_clone'>clone</span>
|
|
805
|
+
<span class='ivar'>@hidden_neurons</span> <span class='op'>=</span> <span class='kw'>unless</span> <span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_neural_hidden'>neural_hidden</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
806
|
+
<span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_neural_hidden'>neural_hidden</span>
|
|
807
|
+
<span class='kw'>else</span>
|
|
808
|
+
<span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_neuron_catalog'>neuron_catalog</span><span class='period'>.</span><span class='id identifier rubyid_keep_if'>keep_if</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_n'>n</span><span class='op'>|</span> <span class='kw'>not</span> <span class='id identifier rubyid_n'>n</span><span class='period'>.</span><span class='id identifier rubyid_input?'>input?</span><span class='rbrace'>}</span>
|
|
809
|
+
<span class='kw'>end</span>
|
|
810
|
+
<span class='ivar'>@critters</span> <span class='op'>=</span> <span class='lparen'>(</span><span class='int'>0</span> <span class='op'>...</span> <span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_start_population_size'>start_population_size</span> <span class='op'>||</span> <span class='id identifier rubyid_c'>c</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span><span class='period'>.</span><span class='id identifier rubyid_population_size'>population_size</span><span class='rparen'>)</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='kw'>do</span>
|
|
811
|
+
<span class='const'>Critter</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span>
|
|
812
|
+
<span class='kw'>end</span>
|
|
813
|
+
<span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='lparen'>(</span><span class='kw'>self</span><span class='rparen'>)</span> <span class='kw'>unless</span> <span class='id identifier rubyid_block'>block</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
814
|
+
<span class='kw'>end</span></pre>
|
|
815
|
+
</td>
|
|
816
|
+
</tr>
|
|
817
|
+
</table>
|
|
818
|
+
</div>
|
|
819
|
+
|
|
820
|
+
</div>
|
|
821
|
+
|
|
822
|
+
<div id="instance_attr_details" class="attr_details">
|
|
823
|
+
<h2>Instance Attribute Details</h2>
|
|
824
|
+
|
|
825
|
+
|
|
826
|
+
<span id="critters=-instance_method"></span>
|
|
827
|
+
<div class="method_details first">
|
|
828
|
+
<h3 class="signature first" id="critters-instance_method">
|
|
829
|
+
|
|
830
|
+
- (<tt>Object</tt>) <strong>critters</strong>
|
|
831
|
+
|
|
832
|
+
|
|
833
|
+
|
|
834
|
+
|
|
835
|
+
|
|
836
|
+
</h3><div class="docstring">
|
|
837
|
+
<div class="discussion">
|
|
838
|
+
|
|
839
|
+
<p>list of critter in this population</p>
|
|
840
|
+
|
|
841
|
+
|
|
842
|
+
</div>
|
|
843
|
+
</div>
|
|
844
|
+
<div class="tags">
|
|
845
|
+
|
|
846
|
+
|
|
847
|
+
</div><table class="source_code">
|
|
848
|
+
<tr>
|
|
849
|
+
<td>
|
|
850
|
+
<pre class="lines">
|
|
851
|
+
|
|
852
|
+
|
|
853
|
+
25
|
|
854
|
+
26
|
|
855
|
+
27</pre>
|
|
856
|
+
</td>
|
|
857
|
+
<td>
|
|
858
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 25</span>
|
|
859
|
+
|
|
860
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_critters'>critters</span>
|
|
861
|
+
<span class='ivar'>@critters</span>
|
|
862
|
+
<span class='kw'>end</span></pre>
|
|
863
|
+
</td>
|
|
864
|
+
</tr>
|
|
865
|
+
</table>
|
|
866
|
+
</div>
|
|
867
|
+
|
|
868
|
+
|
|
869
|
+
<span id=""></span>
|
|
870
|
+
<div class="method_details ">
|
|
871
|
+
<h3 class="signature " id="fitness-instance_method">
|
|
872
|
+
|
|
873
|
+
- (<tt>Object</tt>) <strong>fitness</strong> <span class="extras">(readonly)</span>
|
|
874
|
+
|
|
875
|
+
|
|
876
|
+
|
|
877
|
+
|
|
878
|
+
|
|
879
|
+
</h3><div class="docstring">
|
|
880
|
+
<div class="discussion">
|
|
881
|
+
|
|
882
|
+
<p>Overall population fitness and novelty</p>
|
|
883
|
+
|
|
884
|
+
|
|
885
|
+
</div>
|
|
886
|
+
</div>
|
|
887
|
+
<div class="tags">
|
|
888
|
+
|
|
889
|
+
|
|
890
|
+
</div><table class="source_code">
|
|
891
|
+
<tr>
|
|
892
|
+
<td>
|
|
893
|
+
<pre class="lines">
|
|
894
|
+
|
|
895
|
+
|
|
896
|
+
28
|
|
897
|
+
29
|
|
898
|
+
30</pre>
|
|
899
|
+
</td>
|
|
900
|
+
<td>
|
|
901
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 28</span>
|
|
902
|
+
|
|
903
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_fitness'>fitness</span>
|
|
904
|
+
<span class='ivar'>@fitness</span>
|
|
905
|
+
<span class='kw'>end</span></pre>
|
|
906
|
+
</td>
|
|
907
|
+
</tr>
|
|
908
|
+
</table>
|
|
909
|
+
</div>
|
|
910
|
+
|
|
911
|
+
|
|
912
|
+
<span id="hidden_neurons=-instance_method"></span>
|
|
913
|
+
<div class="method_details ">
|
|
914
|
+
<h3 class="signature " id="hidden_neurons-instance_method">
|
|
915
|
+
|
|
916
|
+
- (<tt>Object</tt>) <strong>hidden_neurons</strong>
|
|
917
|
+
|
|
918
|
+
|
|
919
|
+
|
|
920
|
+
|
|
921
|
+
|
|
922
|
+
</h3><div class="docstring">
|
|
923
|
+
<div class="discussion">
|
|
924
|
+
|
|
925
|
+
<p>List of possible neuron classes for hidden neurons.</p>
|
|
926
|
+
|
|
927
|
+
|
|
928
|
+
</div>
|
|
929
|
+
</div>
|
|
930
|
+
<div class="tags">
|
|
931
|
+
|
|
932
|
+
|
|
933
|
+
</div><table class="source_code">
|
|
934
|
+
<tr>
|
|
935
|
+
<td>
|
|
936
|
+
<pre class="lines">
|
|
937
|
+
|
|
938
|
+
|
|
939
|
+
16
|
|
940
|
+
17
|
|
941
|
+
18</pre>
|
|
942
|
+
</td>
|
|
943
|
+
<td>
|
|
944
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 16</span>
|
|
945
|
+
|
|
946
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_hidden_neurons'>hidden_neurons</span>
|
|
947
|
+
<span class='ivar'>@hidden_neurons</span>
|
|
948
|
+
<span class='kw'>end</span></pre>
|
|
949
|
+
</td>
|
|
950
|
+
</tr>
|
|
951
|
+
</table>
|
|
952
|
+
</div>
|
|
953
|
+
|
|
954
|
+
|
|
955
|
+
<span id="input_neurons=-instance_method"></span>
|
|
956
|
+
<div class="method_details ">
|
|
957
|
+
<h3 class="signature " id="input_neurons-instance_method">
|
|
958
|
+
|
|
959
|
+
- (<tt>Object</tt>) <strong>input_neurons</strong>
|
|
960
|
+
|
|
961
|
+
|
|
962
|
+
|
|
963
|
+
|
|
964
|
+
|
|
965
|
+
</h3><div class="docstring">
|
|
966
|
+
<div class="discussion">
|
|
967
|
+
|
|
968
|
+
<p>Ordered list or hash of input neuron classes (all critters generated here
|
|
969
|
+
shall have this)</p>
|
|
970
|
+
|
|
971
|
+
|
|
972
|
+
</div>
|
|
973
|
+
</div>
|
|
974
|
+
<div class="tags">
|
|
975
|
+
|
|
976
|
+
|
|
977
|
+
</div><table class="source_code">
|
|
978
|
+
<tr>
|
|
979
|
+
<td>
|
|
980
|
+
<pre class="lines">
|
|
981
|
+
|
|
982
|
+
|
|
983
|
+
13
|
|
984
|
+
14
|
|
985
|
+
15</pre>
|
|
986
|
+
</td>
|
|
987
|
+
<td>
|
|
988
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 13</span>
|
|
989
|
+
|
|
990
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_input_neurons'>input_neurons</span>
|
|
991
|
+
<span class='ivar'>@input_neurons</span>
|
|
992
|
+
<span class='kw'>end</span></pre>
|
|
993
|
+
</td>
|
|
994
|
+
</tr>
|
|
995
|
+
</table>
|
|
996
|
+
</div>
|
|
997
|
+
|
|
998
|
+
|
|
999
|
+
<span id=""></span>
|
|
1000
|
+
<div class="method_details ">
|
|
1001
|
+
<h3 class="signature " id="novelty-instance_method">
|
|
1002
|
+
|
|
1003
|
+
- (<tt>Object</tt>) <strong>novelty</strong> <span class="extras">(readonly)</span>
|
|
1004
|
+
|
|
1005
|
+
|
|
1006
|
+
|
|
1007
|
+
|
|
1008
|
+
|
|
1009
|
+
</h3><div class="docstring">
|
|
1010
|
+
<div class="discussion">
|
|
1011
|
+
|
|
1012
|
+
<p>Overall population fitness and novelty</p>
|
|
1013
|
+
|
|
1014
|
+
|
|
1015
|
+
</div>
|
|
1016
|
+
</div>
|
|
1017
|
+
<div class="tags">
|
|
1018
|
+
|
|
1019
|
+
|
|
1020
|
+
</div><table class="source_code">
|
|
1021
|
+
<tr>
|
|
1022
|
+
<td>
|
|
1023
|
+
<pre class="lines">
|
|
1024
|
+
|
|
1025
|
+
|
|
1026
|
+
28
|
|
1027
|
+
29
|
|
1028
|
+
30</pre>
|
|
1029
|
+
</td>
|
|
1030
|
+
<td>
|
|
1031
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 28</span>
|
|
1032
|
+
|
|
1033
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_novelty'>novelty</span>
|
|
1034
|
+
<span class='ivar'>@novelty</span>
|
|
1035
|
+
<span class='kw'>end</span></pre>
|
|
1036
|
+
</td>
|
|
1037
|
+
</tr>
|
|
1038
|
+
</table>
|
|
1039
|
+
</div>
|
|
1040
|
+
|
|
1041
|
+
|
|
1042
|
+
<span id="output_neurons=-instance_method"></span>
|
|
1043
|
+
<div class="method_details ">
|
|
1044
|
+
<h3 class="signature " id="output_neurons-instance_method">
|
|
1045
|
+
|
|
1046
|
+
- (<tt>Object</tt>) <strong>output_neurons</strong>
|
|
1047
|
+
|
|
1048
|
+
|
|
1049
|
+
|
|
1050
|
+
|
|
1051
|
+
|
|
1052
|
+
</h3><div class="docstring">
|
|
1053
|
+
<div class="discussion">
|
|
1054
|
+
|
|
1055
|
+
<p>Ordered list or hash of output neuron classes (all critters generated here
|
|
1056
|
+
shall have this)</p>
|
|
1057
|
+
|
|
1058
|
+
|
|
1059
|
+
</div>
|
|
1060
|
+
</div>
|
|
1061
|
+
<div class="tags">
|
|
1062
|
+
|
|
1063
|
+
|
|
1064
|
+
</div><table class="source_code">
|
|
1065
|
+
<tr>
|
|
1066
|
+
<td>
|
|
1067
|
+
<pre class="lines">
|
|
1068
|
+
|
|
1069
|
+
|
|
1070
|
+
20
|
|
1071
|
+
21
|
|
1072
|
+
22</pre>
|
|
1073
|
+
</td>
|
|
1074
|
+
<td>
|
|
1075
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 20</span>
|
|
1076
|
+
|
|
1077
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_output_neurons'>output_neurons</span>
|
|
1078
|
+
<span class='ivar'>@output_neurons</span>
|
|
1079
|
+
<span class='kw'>end</span></pre>
|
|
1080
|
+
</td>
|
|
1081
|
+
</tr>
|
|
1082
|
+
</table>
|
|
1083
|
+
</div>
|
|
1084
|
+
|
|
1085
|
+
|
|
1086
|
+
<span id=""></span>
|
|
1087
|
+
<div class="method_details ">
|
|
1088
|
+
<h3 class="signature " id="species-instance_method">
|
|
1089
|
+
|
|
1090
|
+
- (<tt>Object</tt>) <strong>species</strong> <span class="extras">(readonly)</span>
|
|
1091
|
+
|
|
1092
|
+
|
|
1093
|
+
|
|
1094
|
+
|
|
1095
|
+
|
|
1096
|
+
</h3><div class="docstring">
|
|
1097
|
+
<div class="discussion">
|
|
1098
|
+
|
|
1099
|
+
<p>Hash list of species lists</p>
|
|
1100
|
+
|
|
1101
|
+
|
|
1102
|
+
</div>
|
|
1103
|
+
</div>
|
|
1104
|
+
<div class="tags">
|
|
1105
|
+
|
|
1106
|
+
|
|
1107
|
+
</div><table class="source_code">
|
|
1108
|
+
<tr>
|
|
1109
|
+
<td>
|
|
1110
|
+
<pre class="lines">
|
|
1111
|
+
|
|
1112
|
+
|
|
1113
|
+
31
|
|
1114
|
+
32
|
|
1115
|
+
33</pre>
|
|
1116
|
+
</td>
|
|
1117
|
+
<td>
|
|
1118
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 31</span>
|
|
1119
|
+
|
|
1120
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_species'>species</span>
|
|
1121
|
+
<span class='ivar'>@species</span>
|
|
1122
|
+
<span class='kw'>end</span></pre>
|
|
1123
|
+
</td>
|
|
1124
|
+
</tr>
|
|
1125
|
+
</table>
|
|
1126
|
+
</div>
|
|
1127
|
+
|
|
1128
|
+
|
|
1129
|
+
<span id="traits=-instance_method"></span>
|
|
1130
|
+
<div class="method_details ">
|
|
1131
|
+
<h3 class="signature " id="traits-instance_method">
|
|
1132
|
+
|
|
1133
|
+
- (<tt>Object</tt>) <strong>traits</strong>
|
|
1134
|
+
|
|
1135
|
+
|
|
1136
|
+
|
|
1137
|
+
|
|
1138
|
+
|
|
1139
|
+
</h3><div class="docstring">
|
|
1140
|
+
<div class="discussion">
|
|
1141
|
+
|
|
1142
|
+
<p>Returns the value of attribute traits</p>
|
|
1143
|
+
|
|
1144
|
+
|
|
1145
|
+
</div>
|
|
1146
|
+
</div>
|
|
1147
|
+
<div class="tags">
|
|
1148
|
+
|
|
1149
|
+
|
|
1150
|
+
</div><table class="source_code">
|
|
1151
|
+
<tr>
|
|
1152
|
+
<td>
|
|
1153
|
+
<pre class="lines">
|
|
1154
|
+
|
|
1155
|
+
|
|
1156
|
+
22
|
|
1157
|
+
23
|
|
1158
|
+
24</pre>
|
|
1159
|
+
</td>
|
|
1160
|
+
<td>
|
|
1161
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 22</span>
|
|
1162
|
+
|
|
1163
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_traits'>traits</span>
|
|
1164
|
+
<span class='ivar'>@traits</span>
|
|
1165
|
+
<span class='kw'>end</span></pre>
|
|
1166
|
+
</td>
|
|
1167
|
+
</tr>
|
|
1168
|
+
</table>
|
|
1169
|
+
</div>
|
|
1170
|
+
|
|
1171
|
+
</div>
|
|
1172
|
+
|
|
1173
|
+
|
|
1174
|
+
<div id="class_method_details" class="method_details_list">
|
|
1175
|
+
<h2>Class Method Details</h2>
|
|
1176
|
+
|
|
1177
|
+
|
|
1178
|
+
<div class="method_details first">
|
|
1179
|
+
<h3 class="signature first" id="compactify!-class_method">
|
|
1180
|
+
|
|
1181
|
+
+ (<tt>Object</tt>) <strong>compactify!</strong>(parm)
|
|
1182
|
+
|
|
1183
|
+
|
|
1184
|
+
|
|
1185
|
+
|
|
1186
|
+
|
|
1187
|
+
</h3><table class="source_code">
|
|
1188
|
+
<tr>
|
|
1189
|
+
<td>
|
|
1190
|
+
<pre class="lines">
|
|
1191
|
+
|
|
1192
|
+
|
|
1193
|
+
102
|
|
1194
|
+
103
|
|
1195
|
+
104
|
|
1196
|
+
105
|
|
1197
|
+
106
|
|
1198
|
+
107
|
|
1199
|
+
108
|
|
1200
|
+
109
|
|
1201
|
+
110
|
|
1202
|
+
111
|
|
1203
|
+
112
|
|
1204
|
+
113
|
|
1205
|
+
114
|
|
1206
|
+
115
|
|
1207
|
+
116
|
|
1208
|
+
117
|
|
1209
|
+
118
|
|
1210
|
+
119
|
|
1211
|
+
120</pre>
|
|
1212
|
+
</td>
|
|
1213
|
+
<td>
|
|
1214
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 102</span>
|
|
1215
|
+
|
|
1216
|
+
<span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_compactify!'>compactify!</span><span class='lparen'>(</span><span class='id identifier rubyid_parm'>parm</span><span class='rparen'>)</span>
|
|
1217
|
+
<span class='id identifier rubyid_mutt'>mutt</span> <span class='op'>=</span> <span class='kw'>self</span><span class='lbracket'>[</span><span class='symbol'>:mutt</span><span class='rbracket'>]</span> <span class='op'>=</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span> <span class='lbracket'>[</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='rbracket'>]</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span>
|
|
1218
|
+
<span class='id identifier rubyid_splist'>splist</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span> <span class='op'>>=</span> <span class='id identifier rubyid_parm'>parm</span><span class='period'>.</span><span class='id identifier rubyid_smallest_species'>smallest_species</span>
|
|
1219
|
+
<span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span>
|
|
1220
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_delete'>delete</span> <span class='id identifier rubyid_k'>k</span>
|
|
1221
|
+
<span class='id identifier rubyid_splist'>splist</span>
|
|
1222
|
+
<span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_flatten'>flatten</span>
|
|
1223
|
+
|
|
1224
|
+
<span class='comment'># FIXME this code is not dry!!!!
|
|
1225
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_mutt'>mutt</span><span class='period'>.</span><span class='id identifier rubyid_fitness='>fitness=</span><span class='lparen'>(</span><span class='id identifier rubyid_fit'>fit</span><span class='rparen'>)</span>
|
|
1226
|
+
<span class='ivar'>@fitness</span> <span class='op'>=</span> <span class='id identifier rubyid_fit'>fit</span>
|
|
1227
|
+
<span class='kw'>end</span>
|
|
1228
|
+
|
|
1229
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_mutt'>mutt</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span>
|
|
1230
|
+
<span class='ivar'>@fitness</span>
|
|
1231
|
+
<span class='kw'>end</span>
|
|
1232
|
+
|
|
1233
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_delete'>delete</span> <span class='symbol'>:mutt</span> <span class='kw'>if</span> <span class='kw'>self</span><span class='lbracket'>[</span><span class='symbol'>:mutt</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span>
|
|
1234
|
+
<span class='kw'>end</span></pre>
|
|
1235
|
+
</td>
|
|
1236
|
+
</tr>
|
|
1237
|
+
</table>
|
|
1238
|
+
</div>
|
|
1239
|
+
|
|
1240
|
+
<div class="method_details ">
|
|
1241
|
+
<h3 class="signature " id="evaluate!-class_method">
|
|
1242
|
+
|
|
1243
|
+
+ (<tt>Object</tt>) <strong>evaluate!</strong>
|
|
1244
|
+
|
|
1245
|
+
|
|
1246
|
+
|
|
1247
|
+
|
|
1248
|
+
|
|
1249
|
+
</h3><table class="source_code">
|
|
1250
|
+
<tr>
|
|
1251
|
+
<td>
|
|
1252
|
+
<pre class="lines">
|
|
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|
+
|
|
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|
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|
|
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97
|
|
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|
+
98
|
|
1258
|
+
99
|
|
1259
|
+
100</pre>
|
|
1260
|
+
</td>
|
|
1261
|
+
<td>
|
|
1262
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 96</span>
|
|
1263
|
+
|
|
1264
|
+
<span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span>
|
|
1265
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_sp'>sp</span><span class='op'>|</span>
|
|
1266
|
+
<span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span> <span class='op'>=</span> <span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_crit'>crit</span><span class='op'>|</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_a'>a</span><span class='op'>+</span><span class='id identifier rubyid_b'>b</span><span class='rbrace'>}</span> <span class='op'>/</span> <span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span>
|
|
1267
|
+
<span class='kw'>end</span>
|
|
1268
|
+
<span class='kw'>end</span></pre>
|
|
1269
|
+
</td>
|
|
1270
|
+
</tr>
|
|
1271
|
+
</table>
|
|
1272
|
+
</div>
|
|
1273
|
+
|
|
1274
|
+
<div class="method_details ">
|
|
1275
|
+
<h3 class="signature " id="member?-class_method">
|
|
1276
|
+
|
|
1277
|
+
+ (<tt>Boolean</tt>) <strong>member?</strong>(crit)
|
|
1278
|
+
|
|
1279
|
+
|
|
1280
|
+
|
|
1281
|
+
|
|
1282
|
+
|
|
1283
|
+
</h3><div class="docstring">
|
|
1284
|
+
<div class="discussion">
|
|
1285
|
+
|
|
1286
|
+
<p>lists keyed by representative critter</p>
|
|
1287
|
+
|
|
1288
|
+
|
|
1289
|
+
</div>
|
|
1290
|
+
</div>
|
|
1291
|
+
<div class="tags">
|
|
1292
|
+
|
|
1293
|
+
<p class="tag_title">Returns:</p>
|
|
1294
|
+
<ul class="return">
|
|
1295
|
+
|
|
1296
|
+
<li>
|
|
1297
|
+
|
|
1298
|
+
|
|
1299
|
+
<span class='type'>(<tt>Boolean</tt>)</span>
|
|
1300
|
+
|
|
1301
|
+
|
|
1302
|
+
|
|
1303
|
+
</li>
|
|
1304
|
+
|
|
1305
|
+
</ul>
|
|
1306
|
+
|
|
1307
|
+
</div><table class="source_code">
|
|
1308
|
+
<tr>
|
|
1309
|
+
<td>
|
|
1310
|
+
<pre class="lines">
|
|
1311
|
+
|
|
1312
|
+
|
|
1313
|
+
92
|
|
1314
|
+
93
|
|
1315
|
+
94</pre>
|
|
1316
|
+
</td>
|
|
1317
|
+
<td>
|
|
1318
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 92</span>
|
|
1319
|
+
|
|
1320
|
+
<span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
|
|
1321
|
+
<span class='kw'>super</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span> <span class='kw'>or</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_li'>li</span><span class='op'>|</span> <span class='id identifier rubyid_li'>li</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span> <span class='id identifier rubyid_crit'>crit</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_t1'>t1</span><span class='comma'>,</span> <span class='id identifier rubyid_t2'>t2</span><span class='op'>|</span> <span class='id identifier rubyid_t1'>t1</span> <span class='kw'>or</span> <span class='id identifier rubyid_t2'>t2</span> <span class='rbrace'>}</span>
|
|
1322
|
+
<span class='kw'>end</span></pre>
|
|
1323
|
+
</td>
|
|
1324
|
+
</tr>
|
|
1325
|
+
</table>
|
|
1326
|
+
</div>
|
|
1327
|
+
|
|
1328
|
+
</div>
|
|
1329
|
+
|
|
1330
|
+
<div id="instance_method_details" class="method_details_list">
|
|
1331
|
+
<h2>Instance Method Details</h2>
|
|
1332
|
+
|
|
1333
|
+
|
|
1334
|
+
<div class="method_details first">
|
|
1335
|
+
<h3 class="signature first" id="analyze!-instance_method">
|
|
1336
|
+
|
|
1337
|
+
- (<tt>Object</tt>) <strong>analyze!</strong>
|
|
1338
|
+
|
|
1339
|
+
|
|
1340
|
+
|
|
1341
|
+
|
|
1342
|
+
|
|
1343
|
+
</h3><div class="docstring">
|
|
1344
|
+
<div class="discussion">
|
|
1345
|
+
|
|
1346
|
+
<p>Alalyze evaluation results.</p>
|
|
1347
|
+
|
|
1348
|
+
|
|
1349
|
+
</div>
|
|
1350
|
+
</div>
|
|
1351
|
+
<div class="tags">
|
|
1352
|
+
|
|
1353
|
+
|
|
1354
|
+
</div><table class="source_code">
|
|
1355
|
+
<tr>
|
|
1356
|
+
<td>
|
|
1357
|
+
<pre class="lines">
|
|
1358
|
+
|
|
1359
|
+
|
|
1360
|
+
74
|
|
1361
|
+
75
|
|
1362
|
+
76</pre>
|
|
1363
|
+
</td>
|
|
1364
|
+
<td>
|
|
1365
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 74</span>
|
|
1366
|
+
|
|
1367
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_analyze!'>analyze!</span>
|
|
1368
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_critter'>critter</span><span class='op'>|</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evaluator'>evaluator</span><span class='period'>.</span><span class='id identifier rubyid_analyze_for_fitness!'>analyze_for_fitness!</span> <span class='id identifier rubyid_critter'>critter</span> <span class='rbrace'>}</span>
|
|
1369
|
+
<span class='kw'>end</span></pre>
|
|
1370
|
+
</td>
|
|
1371
|
+
</tr>
|
|
1372
|
+
</table>
|
|
1373
|
+
</div>
|
|
1374
|
+
|
|
1375
|
+
<div class="method_details ">
|
|
1376
|
+
<h3 class="signature " id="best_critter-instance_method">
|
|
1377
|
+
|
|
1378
|
+
- (<tt>Object</tt>) <strong>best_critter</strong>
|
|
1379
|
+
|
|
1380
|
+
|
|
1381
|
+
|
|
1382
|
+
|
|
1383
|
+
|
|
1384
|
+
</h3><div class="docstring">
|
|
1385
|
+
<div class="discussion">
|
|
1386
|
+
|
|
1387
|
+
<p>The “best critter” is the critter with the lowest (closet to zero) fitness
|
|
1388
|
+
rating.</p>
|
|
1389
|
+
|
|
1390
|
+
|
|
1391
|
+
</div>
|
|
1392
|
+
</div>
|
|
1393
|
+
<div class="tags">
|
|
1394
|
+
|
|
1395
|
+
|
|
1396
|
+
</div><table class="source_code">
|
|
1397
|
+
<tr>
|
|
1398
|
+
<td>
|
|
1399
|
+
<pre class="lines">
|
|
1400
|
+
|
|
1401
|
+
|
|
1402
|
+
176
|
|
1403
|
+
177
|
|
1404
|
+
178
|
|
1405
|
+
179
|
|
1406
|
+
180
|
|
1407
|
+
181
|
|
1408
|
+
182</pre>
|
|
1409
|
+
</td>
|
|
1410
|
+
<td>
|
|
1411
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 176</span>
|
|
1412
|
+
|
|
1413
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_best_critter'>best_critter</span>
|
|
1414
|
+
<span class='kw'>unless</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
1415
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_min'>min</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span><span class='period'>.</span><span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rparen'>)</span> <span class='rbrace'>}</span>
|
|
1416
|
+
<span class='kw'>else</span>
|
|
1417
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_min'>min</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_a'>a</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span> <span class='op'><=></span> <span class='id identifier rubyid_b'>b</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rbrace'>}</span>
|
|
1418
|
+
<span class='kw'>end</span>
|
|
1419
|
+
<span class='kw'>end</span></pre>
|
|
1420
|
+
</td>
|
|
1421
|
+
</tr>
|
|
1422
|
+
</table>
|
|
1423
|
+
</div>
|
|
1424
|
+
|
|
1425
|
+
<div class="method_details ">
|
|
1426
|
+
<h3 class="signature " id="dump_s-instance_method">
|
|
1427
|
+
|
|
1428
|
+
- (<tt>Object</tt>) <strong>dump_s</strong>
|
|
1429
|
+
|
|
1430
|
+
|
|
1431
|
+
|
|
1432
|
+
|
|
1433
|
+
|
|
1434
|
+
</h3><table class="source_code">
|
|
1435
|
+
<tr>
|
|
1436
|
+
<td>
|
|
1437
|
+
<pre class="lines">
|
|
1438
|
+
|
|
1439
|
+
|
|
1440
|
+
194
|
|
1441
|
+
195
|
|
1442
|
+
196</pre>
|
|
1443
|
+
</td>
|
|
1444
|
+
<td>
|
|
1445
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 194</span>
|
|
1446
|
+
|
|
1447
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_dump_s'>dump_s</span>
|
|
1448
|
+
<span class='id identifier rubyid_to_s'>to_s</span> <span class='op'>+</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\npopulation:\n</span><span class='tstring_end'>"</span></span> <span class='op'>+</span> <span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_crit'>crit</span><span class='op'>|</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_dump_s'>dump_s</span> <span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_join'>join</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>\n</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span>
|
|
1449
|
+
<span class='kw'>end</span></pre>
|
|
1450
|
+
</td>
|
|
1451
|
+
</tr>
|
|
1452
|
+
</table>
|
|
1453
|
+
</div>
|
|
1454
|
+
|
|
1455
|
+
<div class="method_details ">
|
|
1456
|
+
<h3 class="signature " id="evaluate!-instance_method">
|
|
1457
|
+
|
|
1458
|
+
- (<tt>Object</tt>) <strong>evaluate!</strong>
|
|
1459
|
+
|
|
1460
|
+
|
|
1461
|
+
|
|
1462
|
+
|
|
1463
|
+
|
|
1464
|
+
</h3><div class="docstring">
|
|
1465
|
+
<div class="discussion">
|
|
1466
|
+
|
|
1467
|
+
<p>Called for each sequence.</p>
|
|
1468
|
+
|
|
1469
|
+
|
|
1470
|
+
</div>
|
|
1471
|
+
</div>
|
|
1472
|
+
<div class="tags">
|
|
1473
|
+
|
|
1474
|
+
|
|
1475
|
+
</div><table class="source_code">
|
|
1476
|
+
<tr>
|
|
1477
|
+
<td>
|
|
1478
|
+
<pre class="lines">
|
|
1479
|
+
|
|
1480
|
+
|
|
1481
|
+
69
|
|
1482
|
+
70
|
|
1483
|
+
71</pre>
|
|
1484
|
+
</td>
|
|
1485
|
+
<td>
|
|
1486
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 69</span>
|
|
1487
|
+
|
|
1488
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evaluate!'>evaluate!</span>
|
|
1489
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_critter'>critter</span><span class='op'>|</span> <span class='id identifier rubyid_critter'>critter</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span> <span class='rbrace'>}</span>
|
|
1490
|
+
<span class='kw'>end</span></pre>
|
|
1491
|
+
</td>
|
|
1492
|
+
</tr>
|
|
1493
|
+
</table>
|
|
1494
|
+
</div>
|
|
1495
|
+
|
|
1496
|
+
<div class="method_details ">
|
|
1497
|
+
<h3 class="signature " id="evolve-instance_method">
|
|
1498
|
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|
|
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|
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- (<tt>Object</tt>) <strong>evolve</strong>
|
|
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|
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|
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|
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|
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|
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|
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|
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</h3><div class="docstring">
|
|
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|
+
<div class="discussion">
|
|
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|
+
|
|
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|
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<p>Call this after evaluation. Returns a newly-evolved population.</p>
|
|
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|
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|
|
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|
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|
|
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|
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</div>
|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
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|
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</div><table class="source_code">
|
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|
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|
|
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|
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|
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|
|
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|
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82</pre>
|
|
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|
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|
|
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|
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<td>
|
|
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|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 80</span>
|
|
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|
+
|
|
1529
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_evolve'>evolve</span>
|
|
1530
|
+
<span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evolver'>evolver</span><span class='period'>.</span><span class='id identifier rubyid_evolve'>evolve</span> <span class='kw'>self</span>
|
|
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|
+
<span class='kw'>end</span></pre>
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
1537
|
+
<div class="method_details ">
|
|
1538
|
+
<h3 class="signature " id="express!-instance_method">
|
|
1539
|
+
|
|
1540
|
+
- (<tt>Object</tt>) <strong>express!</strong>
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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|
|
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|
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</h3><div class="docstring">
|
|
1547
|
+
<div class="discussion">
|
|
1548
|
+
|
|
1549
|
+
<p>Express the entire population.</p>
|
|
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|
+
|
|
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|
+
|
|
1552
|
+
</div>
|
|
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|
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|
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|
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<div class="tags">
|
|
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|
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|
|
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|
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|
|
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|
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</div><table class="source_code">
|
|
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|
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|
|
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|
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|
|
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|
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<pre class="lines">
|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
+
66</pre>
|
|
1566
|
+
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|
|
1567
|
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<td>
|
|
1568
|
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<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 64</span>
|
|
1569
|
+
|
|
1570
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_express!'>express!</span>
|
|
1571
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_critter'>critter</span><span class='op'>|</span> <span class='id identifier rubyid_critter'>critter</span><span class='period'>.</span><span class='id identifier rubyid_express!'>express!</span> <span class='rbrace'>}</span>
|
|
1572
|
+
<span class='kw'>end</span></pre>
|
|
1573
|
+
</td>
|
|
1574
|
+
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|
|
1575
|
+
</table>
|
|
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|
+
</div>
|
|
1577
|
+
|
|
1578
|
+
<div class="method_details ">
|
|
1579
|
+
<h3 class="signature " id="initialize_for_recurrence!-instance_method">
|
|
1580
|
+
|
|
1581
|
+
- (<tt>Object</tt>) <strong>initialize_for_recurrence!</strong>
|
|
1582
|
+
|
|
1583
|
+
|
|
1584
|
+
|
|
1585
|
+
|
|
1586
|
+
|
|
1587
|
+
</h3><div class="docstring">
|
|
1588
|
+
<div class="discussion">
|
|
1589
|
+
|
|
1590
|
+
<p>Make sure all critters are reset and prepared for recurrent network
|
|
1591
|
+
evaluation.</p>
|
|
1592
|
+
|
|
1593
|
+
|
|
1594
|
+
</div>
|
|
1595
|
+
</div>
|
|
1596
|
+
<div class="tags">
|
|
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|
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|
|
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|
+
|
|
1599
|
+
</div><table class="source_code">
|
|
1600
|
+
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|
|
1601
|
+
<td>
|
|
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|
+
<pre class="lines">
|
|
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|
+
|
|
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|
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|
|
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|
+
54
|
|
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|
+
55
|
|
1607
|
+
56</pre>
|
|
1608
|
+
</td>
|
|
1609
|
+
<td>
|
|
1610
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 54</span>
|
|
1611
|
+
|
|
1612
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_initialize_for_recurrence!'>initialize_for_recurrence!</span>
|
|
1613
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_crit'>crit</span><span class='op'>|</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_initialize_neurons!'>initialize_neurons!</span><span class='rbrace'>}</span>
|
|
1614
|
+
<span class='kw'>end</span></pre>
|
|
1615
|
+
</td>
|
|
1616
|
+
</tr>
|
|
1617
|
+
</table>
|
|
1618
|
+
</div>
|
|
1619
|
+
|
|
1620
|
+
<div class="method_details ">
|
|
1621
|
+
<h3 class="signature " id="mutate!-instance_method">
|
|
1622
|
+
|
|
1623
|
+
- (<tt>Object</tt>) <strong>mutate!</strong>
|
|
1624
|
+
|
|
1625
|
+
|
|
1626
|
+
|
|
1627
|
+
|
|
1628
|
+
|
|
1629
|
+
</h3><div class="docstring">
|
|
1630
|
+
<div class="discussion">
|
|
1631
|
+
|
|
1632
|
+
<p>Mutate the genes and neurons.</p>
|
|
1633
|
+
|
|
1634
|
+
|
|
1635
|
+
</div>
|
|
1636
|
+
</div>
|
|
1637
|
+
<div class="tags">
|
|
1638
|
+
|
|
1639
|
+
|
|
1640
|
+
</div><table class="source_code">
|
|
1641
|
+
<tr>
|
|
1642
|
+
<td>
|
|
1643
|
+
<pre class="lines">
|
|
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|
+
|
|
1645
|
+
|
|
1646
|
+
59
|
|
1647
|
+
60
|
|
1648
|
+
61</pre>
|
|
1649
|
+
</td>
|
|
1650
|
+
<td>
|
|
1651
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 59</span>
|
|
1652
|
+
|
|
1653
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_mutate!'>mutate!</span>
|
|
1654
|
+
<span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_evolver'>evolver</span><span class='period'>.</span><span class='id identifier rubyid_mutate!'>mutate!</span> <span class='kw'>self</span>
|
|
1655
|
+
<span class='kw'>end</span></pre>
|
|
1656
|
+
</td>
|
|
1657
|
+
</tr>
|
|
1658
|
+
</table>
|
|
1659
|
+
</div>
|
|
1660
|
+
|
|
1661
|
+
<div class="method_details ">
|
|
1662
|
+
<h3 class="signature " id="report-instance_method">
|
|
1663
|
+
|
|
1664
|
+
- (<tt>Object</tt>) <strong>report</strong>
|
|
1665
|
+
|
|
1666
|
+
|
|
1667
|
+
|
|
1668
|
+
|
|
1669
|
+
|
|
1670
|
+
</h3><div class="docstring">
|
|
1671
|
+
<div class="discussion">
|
|
1672
|
+
|
|
1673
|
+
<h2 id="label-Generate+a+report+on+the+state+of+this+population.">Generate a report on the state of this population.</h2>
|
|
1674
|
+
|
|
1675
|
+
|
|
1676
|
+
</div>
|
|
1677
|
+
</div>
|
|
1678
|
+
<div class="tags">
|
|
1679
|
+
|
|
1680
|
+
|
|
1681
|
+
</div><table class="source_code">
|
|
1682
|
+
<tr>
|
|
1683
|
+
<td>
|
|
1684
|
+
<pre class="lines">
|
|
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|
+
|
|
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|
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|
|
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|
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165
|
|
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|
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|
|
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|
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167
|
|
1690
|
+
168
|
|
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|
+
169
|
|
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|
+
170
|
|
1693
|
+
171
|
|
1694
|
+
172</pre>
|
|
1695
|
+
</td>
|
|
1696
|
+
<td>
|
|
1697
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 165</span>
|
|
1698
|
+
|
|
1699
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_report'>report</span>
|
|
1700
|
+
<span class='lbrace'>{</span>
|
|
1701
|
+
<span class='label'>fitness:</span> <span class='id identifier rubyid_report_fitness'>report_fitness</span><span class='comma'>,</span>
|
|
1702
|
+
<span class='label'>fitness_species:</span> <span class='id identifier rubyid_report_fitness_species'>report_fitness_species</span><span class='comma'>,</span>
|
|
1703
|
+
<span class='label'>best_critter:</span> <span class='id identifier rubyid_report_best_fit'>report_best_fit</span><span class='comma'>,</span>
|
|
1704
|
+
<span class='label'>worst_critter:</span> <span class='id identifier rubyid_report_worst_fit'>report_worst_fit</span><span class='comma'>,</span>
|
|
1705
|
+
<span class='rbrace'>}</span>
|
|
1706
|
+
<span class='kw'>end</span></pre>
|
|
1707
|
+
</td>
|
|
1708
|
+
</tr>
|
|
1709
|
+
</table>
|
|
1710
|
+
</div>
|
|
1711
|
+
|
|
1712
|
+
<div class="method_details ">
|
|
1713
|
+
<h3 class="signature " id="speciate!-instance_method">
|
|
1714
|
+
|
|
1715
|
+
- (<tt>Object</tt>) <strong>speciate!</strong>
|
|
1716
|
+
|
|
1717
|
+
|
|
1718
|
+
|
|
1719
|
+
|
|
1720
|
+
|
|
1721
|
+
</h3><div class="docstring">
|
|
1722
|
+
<div class="discussion">
|
|
1723
|
+
|
|
1724
|
+
<p>Group critters into species Note that the @species objects have useful
|
|
1725
|
+
singleton methods:</p>
|
|
1726
|
+
<ul><li>
|
|
1727
|
+
<p>@species.member? – checks all of the lists for membership, not just the
|
|
1728
|
+
hash</p>
|
|
1729
|
+
</li><li>
|
|
1730
|
+
<p>@<a href="crit">species</a>.fitness – fitness of the entire species</p>
|
|
1731
|
+
</li></ul>
|
|
1732
|
+
|
|
1733
|
+
|
|
1734
|
+
</div>
|
|
1735
|
+
</div>
|
|
1736
|
+
<div class="tags">
|
|
1737
|
+
|
|
1738
|
+
|
|
1739
|
+
</div><table class="source_code">
|
|
1740
|
+
<tr>
|
|
1741
|
+
<td>
|
|
1742
|
+
<pre class="lines">
|
|
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|
+
|
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|
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|
|
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|
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89
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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160
|
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|
+
161</pre>
|
|
1818
|
+
</td>
|
|
1819
|
+
<td>
|
|
1820
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 89</span>
|
|
1821
|
+
|
|
1822
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_speciate!'>speciate!</span>
|
|
1823
|
+
<span class='comment'># We blow away existing species and create our own member? function
|
|
1824
|
+
</span> <span class='ivar'>@species</span> <span class='op'>=</span> <span class='lbrace'>{</span><span class='rbrace'>}</span> <span class='comment'># lists keyed by representative critter
|
|
1825
|
+
</span> <span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span>
|
|
1826
|
+
<span class='kw'>super</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span><span class='lparen'>(</span><span class='id identifier rubyid_crit'>crit</span><span class='rparen'>)</span> <span class='kw'>or</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_li'>li</span><span class='op'>|</span> <span class='id identifier rubyid_li'>li</span><span class='period'>.</span><span class='id identifier rubyid_member?'>member?</span> <span class='id identifier rubyid_crit'>crit</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_t1'>t1</span><span class='comma'>,</span> <span class='id identifier rubyid_t2'>t2</span><span class='op'>|</span> <span class='id identifier rubyid_t1'>t1</span> <span class='kw'>or</span> <span class='id identifier rubyid_t2'>t2</span> <span class='rbrace'>}</span>
|
|
1827
|
+
<span class='kw'>end</span>
|
|
1828
|
+
|
|
1829
|
+
<span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span>
|
|
1830
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_sp'>sp</span><span class='op'>|</span>
|
|
1831
|
+
<span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span> <span class='op'>=</span> <span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_crit'>crit</span><span class='op'>|</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reduce'>reduce</span><span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span><span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_a'>a</span><span class='op'>+</span><span class='id identifier rubyid_b'>b</span><span class='rbrace'>}</span> <span class='op'>/</span> <span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span>
|
|
1832
|
+
<span class='kw'>end</span>
|
|
1833
|
+
<span class='kw'>end</span>
|
|
1834
|
+
|
|
1835
|
+
<span class='kw'>def</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_compactify!'>compactify!</span><span class='lparen'>(</span><span class='id identifier rubyid_parm'>parm</span><span class='rparen'>)</span>
|
|
1836
|
+
<span class='id identifier rubyid_mutt'>mutt</span> <span class='op'>=</span> <span class='kw'>self</span><span class='lbracket'>[</span><span class='symbol'>:mutt</span><span class='rbracket'>]</span> <span class='op'>=</span> <span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span> <span class='lbracket'>[</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='rbracket'>]</span><span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_reject'>reject</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span>
|
|
1837
|
+
<span class='id identifier rubyid_splist'>splist</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span> <span class='op'>>=</span> <span class='id identifier rubyid_parm'>parm</span><span class='period'>.</span><span class='id identifier rubyid_smallest_species'>smallest_species</span>
|
|
1838
|
+
<span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_map'>map</span> <span class='lbrace'>{</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_splist'>splist</span><span class='op'>|</span>
|
|
1839
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_delete'>delete</span> <span class='id identifier rubyid_k'>k</span>
|
|
1840
|
+
<span class='id identifier rubyid_splist'>splist</span>
|
|
1841
|
+
<span class='rbrace'>}</span><span class='period'>.</span><span class='id identifier rubyid_flatten'>flatten</span>
|
|
1842
|
+
|
|
1843
|
+
<span class='comment'># FIXME this code is not dry!!!!
|
|
1844
|
+
</span> <span class='kw'>def</span> <span class='id identifier rubyid_mutt'>mutt</span><span class='period'>.</span><span class='id identifier rubyid_fitness='>fitness=</span><span class='lparen'>(</span><span class='id identifier rubyid_fit'>fit</span><span class='rparen'>)</span>
|
|
1845
|
+
<span class='ivar'>@fitness</span> <span class='op'>=</span> <span class='id identifier rubyid_fit'>fit</span>
|
|
1846
|
+
<span class='kw'>end</span>
|
|
1847
|
+
|
|
1848
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_mutt'>mutt</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span>
|
|
1849
|
+
<span class='ivar'>@fitness</span>
|
|
1850
|
+
<span class='kw'>end</span>
|
|
1851
|
+
|
|
1852
|
+
<span class='kw'>self</span><span class='period'>.</span><span class='id identifier rubyid_delete'>delete</span> <span class='symbol'>:mutt</span> <span class='kw'>if</span> <span class='kw'>self</span><span class='lbracket'>[</span><span class='symbol'>:mutt</span><span class='rbracket'>]</span><span class='period'>.</span><span class='id identifier rubyid_empty?'>empty?</span>
|
|
1853
|
+
<span class='kw'>end</span>
|
|
1854
|
+
|
|
1855
|
+
<span class='comment'># Some convience parms
|
|
1856
|
+
</span> <span class='id identifier rubyid_parm'>parm</span> <span class='op'>=</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_parms'>parms</span>
|
|
1857
|
+
|
|
1858
|
+
<span class='comment'># And so now we iterate...
|
|
1859
|
+
</span> <span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_crit'>crit</span><span class='op'>|</span>
|
|
1860
|
+
<span class='id identifier rubyid_wearein'>wearein</span> <span class='op'>=</span> <span class='kw'>false</span>
|
|
1861
|
+
<span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_ck'>ck</span><span class='comma'>,</span> <span class='id identifier rubyid_list'>list</span><span class='op'>|</span>
|
|
1862
|
+
<span class='id identifier rubyid_delta'>delta</span> <span class='op'>=</span> <span class='id identifier rubyid_crit'>crit</span><span class='period'>.</span><span class='id identifier rubyid_compare'>compare</span><span class='lparen'>(</span><span class='id identifier rubyid_ck'>ck</span><span class='rparen'>)</span>
|
|
1863
|
+
<span class='comment'>#log.debug { "delta for #{crit} and #{ck} is #{delta}" }
|
|
1864
|
+
</span> <span class='kw'>if</span> <span class='id identifier rubyid_delta'>delta</span> <span class='op'><</span> <span class='id identifier rubyid_parm'>parm</span><span class='period'>.</span><span class='id identifier rubyid_compatibility_threshold'>compatibility_threshold</span>
|
|
1865
|
+
<span class='id identifier rubyid_list'>list</span> <span class='op'><<</span> <span class='id identifier rubyid_crit'>crit</span>
|
|
1866
|
+
<span class='id identifier rubyid_wearein'>wearein</span> <span class='op'>=</span> <span class='kw'>true</span>
|
|
1867
|
+
<span class='kw'>break</span>
|
|
1868
|
+
<span class='kw'>end</span>
|
|
1869
|
+
<span class='kw'>end</span>
|
|
1870
|
+
|
|
1871
|
+
<span class='comment'># New species?
|
|
1872
|
+
</span> <span class='kw'>unless</span> <span class='id identifier rubyid_wearein'>wearein</span>
|
|
1873
|
+
<span class='ivar'>@species</span><span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='rbracket'>]</span> <span class='op'>=</span> <span class='id identifier rubyid_species'>species</span> <span class='op'>=</span> <span class='lbracket'>[</span><span class='id identifier rubyid_crit'>crit</span><span class='rbracket'>]</span>
|
|
1874
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_species'>species</span><span class='period'>.</span><span class='id identifier rubyid_fitness='>fitness=</span><span class='lparen'>(</span><span class='id identifier rubyid_fit'>fit</span><span class='rparen'>)</span>
|
|
1875
|
+
<span class='ivar'>@fitness</span> <span class='op'>=</span> <span class='id identifier rubyid_fit'>fit</span>
|
|
1876
|
+
<span class='kw'>end</span>
|
|
1877
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_species'>species</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span>
|
|
1878
|
+
<span class='ivar'>@fitness</span>
|
|
1879
|
+
<span class='kw'>end</span>
|
|
1880
|
+
<span class='kw'>end</span>
|
|
1881
|
+
<span class='kw'>end</span>
|
|
1882
|
+
|
|
1883
|
+
<span class='comment'># Compactify the species if less than smallest_species
|
|
1884
|
+
</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_compactify!'>compactify!</span> <span class='id identifier rubyid_parm'>parm</span>
|
|
1885
|
+
|
|
1886
|
+
<span class='comment'># And now we evaluate all species for fitness...
|
|
1887
|
+
</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_evaluate!'>evaluate!</span>
|
|
1888
|
+
|
|
1889
|
+
<span class='comment'># Dump for debugging reasons
|
|
1890
|
+
</span> <span class='ivar'>@species</span><span class='period'>.</span><span class='id identifier rubyid_each'>each</span> <span class='kw'>do</span> <span class='op'>|</span><span class='id identifier rubyid_k'>k</span><span class='comma'>,</span> <span class='id identifier rubyid_sp'>sp</span><span class='op'>|</span>
|
|
1891
|
+
<span class='id identifier rubyid_log'>log</span><span class='period'>.</span><span class='id identifier rubyid_debug'>debug</span> <span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>>> Species </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_k'>k</span><span class='embexpr_end'>}</span><span class='tstring_content'> has </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='embexpr_end'>}</span><span class='tstring_content'> members with a </span><span class='embexpr_beg'>#{</span><span class='id identifier rubyid_sp'>sp</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='embexpr_end'>}</span><span class='tstring_content'> fitness</span><span class='tstring_end'>"</span></span>
|
|
1892
|
+
<span class='kw'>end</span>
|
|
1893
|
+
|
|
1894
|
+
<span class='kw'>end</span></pre>
|
|
1895
|
+
</td>
|
|
1896
|
+
</tr>
|
|
1897
|
+
</table>
|
|
1898
|
+
</div>
|
|
1899
|
+
|
|
1900
|
+
<div class="method_details ">
|
|
1901
|
+
<h3 class="signature " id="worst_critter-instance_method">
|
|
1902
|
+
|
|
1903
|
+
- (<tt>Object</tt>) <strong>worst_critter</strong>
|
|
1904
|
+
|
|
1905
|
+
|
|
1906
|
+
|
|
1907
|
+
|
|
1908
|
+
|
|
1909
|
+
</h3><div class="docstring">
|
|
1910
|
+
<div class="discussion">
|
|
1911
|
+
|
|
1912
|
+
<p>The “worst critter” is the critter with the highest (away from zero)
|
|
1913
|
+
fitness rating.</p>
|
|
1914
|
+
|
|
1915
|
+
|
|
1916
|
+
</div>
|
|
1917
|
+
</div>
|
|
1918
|
+
<div class="tags">
|
|
1919
|
+
|
|
1920
|
+
|
|
1921
|
+
</div><table class="source_code">
|
|
1922
|
+
<tr>
|
|
1923
|
+
<td>
|
|
1924
|
+
<pre class="lines">
|
|
1925
|
+
|
|
1926
|
+
|
|
1927
|
+
186
|
|
1928
|
+
187
|
|
1929
|
+
188
|
|
1930
|
+
189
|
|
1931
|
+
190
|
|
1932
|
+
191
|
|
1933
|
+
192</pre>
|
|
1934
|
+
</td>
|
|
1935
|
+
<td>
|
|
1936
|
+
<pre class="code"><span class="info file"># File 'lib/rubyneat/population.rb', line 186</span>
|
|
1937
|
+
|
|
1938
|
+
<span class='kw'>def</span> <span class='id identifier rubyid_worst_critter'>worst_critter</span>
|
|
1939
|
+
<span class='kw'>unless</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span><span class='period'>.</span><span class='id identifier rubyid_nil?'>nil?</span>
|
|
1940
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_max'>max</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='ivar'>@controller</span><span class='period'>.</span><span class='id identifier rubyid_compare_func'>compare_func</span><span class='period'>.</span><span class='lparen'>(</span><span class='id identifier rubyid_a'>a</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rparen'>)</span> <span class='rbrace'>}</span>
|
|
1941
|
+
<span class='kw'>else</span>
|
|
1942
|
+
<span class='ivar'>@critters</span><span class='period'>.</span><span class='id identifier rubyid_max'>max</span> <span class='lbrace'>{</span><span class='op'>|</span><span class='id identifier rubyid_a'>a</span><span class='comma'>,</span> <span class='id identifier rubyid_b'>b</span><span class='op'>|</span> <span class='id identifier rubyid_a'>a</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span> <span class='op'><=></span> <span class='id identifier rubyid_b'>b</span><span class='period'>.</span><span class='id identifier rubyid_fitness'>fitness</span><span class='rbrace'>}</span>
|
|
1943
|
+
<span class='kw'>end</span>
|
|
1944
|
+
<span class='kw'>end</span></pre>
|
|
1945
|
+
</td>
|
|
1946
|
+
</tr>
|
|
1947
|
+
</table>
|
|
1948
|
+
</div>
|
|
1949
|
+
|
|
1950
|
+
</div>
|
|
1951
|
+
|
|
1952
|
+
</div>
|
|
1953
|
+
|
|
1954
|
+
<div id="footer">
|
|
1955
|
+
Generated on Sun Apr 13 15:54:03 2014 by
|
|
1956
|
+
<a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
|
|
1957
|
+
0.8.7.4 (ruby-2.1.1).
|
|
1958
|
+
</div>
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1959
|
+
|
|
1960
|
+
</body>
|
|
1961
|
+
</html>
|