rubyneat 0.3.5.alpha.2
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/.directory +4 -0
- data/.gitignore.orig +20 -0
- data/.idea/.name +1 -0
- data/.idea/.rakeTasks +7 -0
- data/.idea/dictionaries/trader.xml +3 -0
- data/.idea/encodings.xml +5 -0
- data/.idea/misc.xml +5 -0
- data/.idea/modules.xml +9 -0
- data/.idea/rubyneat.iml +197 -0
- data/.idea/runConfigurations/invpend_neat.xml +26 -0
- data/.idea/runConfigurations/sigdebug_neat.xml +24 -0
- data/.idea/runConfigurations/xor_neat.xml +26 -0
- data/.idea/runConfigurations/xordebug_neat.xml +24 -0
- data/.idea/runConfigurations/xorsin_neat.xml +24 -0
- data/.idea/scopes/scope_settings.xml +5 -0
- data/.idea/vcs.xml +7 -0
- data/.idea/workspace.xml +1124 -0
- data/.semver +5 -0
- data/.yardoc/checksums +11 -0
- data/.yardoc/object_types +0 -0
- data/.yardoc/objects/root.dat +0 -0
- data/.yardoc/proxy_types +0 -0
- data/Gemfile +32 -0
- data/Gemfile.lock +135 -0
- data/Gemfile.lock.orig +147 -0
- data/Guardfile +8 -0
- data/Rakefile +61 -0
- data/bin/neat +83 -0
- data/config/application.rb +5 -0
- data/doc/ControllerPoint.html +125 -0
- data/doc/CuteA.html +286 -0
- data/doc/CuteB.html +297 -0
- data/doc/DSL.html +883 -0
- data/doc/NEAT/BasicNeuronTypes/BiasNeuron.html +518 -0
- data/doc/NEAT/BasicNeuronTypes/CosineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/InputNeuron.html +366 -0
- data/doc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +275 -0
- data/doc/NEAT/BasicNeuronTypes/SineNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes/TanhNeuron.html +274 -0
- data/doc/NEAT/BasicNeuronTypes.html +136 -0
- data/doc/NEAT/Controller/NeatSettings.html +3985 -0
- data/doc/NEAT/Controller.html +2490 -0
- data/doc/NEAT/Critter/Genotype/Gene.html +979 -0
- data/doc/NEAT/Critter/Genotype.html +1601 -0
- data/doc/NEAT/Critter/Phenotype.html +603 -0
- data/doc/NEAT/Critter.html +1037 -0
- data/doc/NEAT/DSL.html +1255 -0
- data/doc/NEAT/Evaluator.html +420 -0
- data/doc/NEAT/Evolver/CritterOp.html +551 -0
- data/doc/NEAT/Evolver.html +602 -0
- data/doc/NEAT/Expressor.html +327 -0
- data/doc/NEAT/Graph/DependencyResolver.html +478 -0
- data/doc/NEAT/Graph/GraphException.html +123 -0
- data/doc/NEAT/Graph.html +402 -0
- data/doc/NEAT/NeatException.html +123 -0
- data/doc/NEAT/NeatOb.html +567 -0
- data/doc/NEAT/Neuron.html +1067 -0
- data/doc/NEAT/Operator.html +162 -0
- data/doc/NEAT/Population.html +1961 -0
- data/doc/NEAT/Trait.html +169 -0
- data/doc/NEAT.html +588 -0
- data/doc/_index.html +373 -0
- data/doc/class_list.html +54 -0
- data/doc/css/common.css +1 -0
- data/doc/css/full_list.css +57 -0
- data/doc/css/style.css +339 -0
- data/doc/file_list.html +53 -0
- data/doc/frames.html +26 -0
- data/doc/index.html +373 -0
- data/doc/js/app.js +219 -0
- data/doc/js/full_list.js +178 -0
- data/doc/js/jquery.js +4 -0
- data/doc/method_list.html +1415 -0
- data/doc/top-level-namespace.html +164 -0
- data/foo/foo_aquarium_example.rb +38 -0
- data/foo/foo_gosu.rb +99 -0
- data/foo/foo_rubygoo.rb +104 -0
- data/foo/foo_sdl.rb +34 -0
- data/foo/icon.png +0 -0
- data/lib/rubyneat/critter.rb +374 -0
- data/lib/rubyneat/default_neat.rb +10 -0
- data/lib/rubyneat/dsl.rb +130 -0
- data/lib/rubyneat/evaluator.rb +51 -0
- data/lib/rubyneat/evolver.rb +315 -0
- data/lib/rubyneat/expressor.rb +110 -0
- data/lib/rubyneat/graph.rb +95 -0
- data/lib/rubyneat/neuron.rb +152 -0
- data/lib/rubyneat/population.rb +227 -0
- data/lib/rubyneat/rubyneat.rb +429 -0
- data/lib/rubyneat.rb +8 -0
- data/neater/invpend_neat.rb +150 -0
- data/neater/rnlib/inverted_pendulum.rb +380 -0
- data/neater/rnlib/xor.rb +10 -0
- data/neater/sigdebug_neat.rb +136 -0
- data/neater/xor_neat.rb +137 -0
- data/neater/xoranalog_neat.rb +138 -0
- data/neater/xorsin_neat.rb +143 -0
- data/projectFilesBackup/.idea/rubyneat.iml +180 -0
- data/public/.directory +4 -0
- data/public/background.png +0 -0
- data/public/background.xcf +0 -0
- data/public/cart.png +0 -0
- data/public/cart.xcf +0 -0
- data/public/metalpoles_molton_ball_l.jpg +0 -0
- data/public/old_background.png +0 -0
- data/public/pointer.png +0 -0
- data/public/pointer.xcf +0 -0
- data/public/pole.kra +0 -0
- data/public/pole.png +0 -0
- data/public/pole.xcf +0 -0
- data/public/wheel-of-year-stone-DD-131-WOYS.jpg +0 -0
- data/public/wheel.png +0 -0
- data/public/wheel.xcf +0 -0
- data/public/wood-planks-texture.jpg +0 -0
- data/rdoc/ControllerPoint.html +116 -0
- data/rdoc/CuteA.html +177 -0
- data/rdoc/CuteB.html +178 -0
- data/rdoc/DSLSetup.html +177 -0
- data/rdoc/GameTestWindow.html +242 -0
- data/rdoc/GameWindow.html +292 -0
- data/rdoc/Gemfile.html +215 -0
- data/rdoc/Gemfile_lock.html +327 -0
- data/rdoc/GraphTest.html +210 -0
- data/rdoc/Guardfile.html +198 -0
- data/rdoc/InvertedPendulum/Cart.html +668 -0
- data/rdoc/InvertedPendulum/DSL.html +259 -0
- data/rdoc/InvertedPendulum/InvPendWindow.html +402 -0
- data/rdoc/InvertedPendulum.html +198 -0
- data/rdoc/Logger.html +98 -0
- data/rdoc/NEAT/BasicNeuronTypes/BiasNeuron.html +265 -0
- data/rdoc/NEAT/BasicNeuronTypes/CosineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/InputNeuron.html +206 -0
- data/rdoc/NEAT/BasicNeuronTypes/SigmoidNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/SineNeuron.html +162 -0
- data/rdoc/NEAT/BasicNeuronTypes/TanhNeuron.html +161 -0
- data/rdoc/NEAT/BasicNeuronTypes.html +107 -0
- data/rdoc/NEAT/Controller/NeatSettings.html +880 -0
- data/rdoc/NEAT/Controller.html +729 -0
- data/rdoc/NEAT/Critter/Genotype/Gene.html +457 -0
- data/rdoc/NEAT/Critter/Genotype.html +735 -0
- data/rdoc/NEAT/Critter/Phenotype.html +330 -0
- data/rdoc/NEAT/Critter.html +489 -0
- data/rdoc/NEAT/DSL.html +729 -0
- data/rdoc/NEAT/Evaluator.html +256 -0
- data/rdoc/NEAT/Evolver/CritterOp.html +349 -0
- data/rdoc/NEAT/Evolver.html +891 -0
- data/rdoc/NEAT/Expressor.html +402 -0
- data/rdoc/NEAT/Graph/DependencyResolver.html +291 -0
- data/rdoc/NEAT/Graph/GraphException.html +105 -0
- data/rdoc/NEAT/Graph.html +263 -0
- data/rdoc/NEAT/NeatException.html +105 -0
- data/rdoc/NEAT/NeatOb.html +325 -0
- data/rdoc/NEAT/Neuron.html +481 -0
- data/rdoc/NEAT/Operator.html +109 -0
- data/rdoc/NEAT/Population.html +935 -0
- data/rdoc/NEAT/Trait.html +117 -0
- data/rdoc/NEAT.html +422 -0
- data/rdoc/Object.html +384 -0
- data/rdoc/Phi.html +98 -0
- data/rdoc/Player.html +383 -0
- data/rdoc/Rakefile.html +254 -0
- data/rdoc/RubyNEAT/Application.html +105 -0
- data/rdoc/RubyNEAT.html +98 -0
- data/rdoc/SDL/Event2.html +98 -0
- data/rdoc/SDL.html +98 -0
- data/rdoc/Vector.html +195 -0
- data/rdoc/created.rid +125 -0
- data/rdoc/doc/ControllerPoint_html.html +299 -0
- data/rdoc/doc/CuteA_html.html +438 -0
- data/rdoc/doc/CuteB_html.html +436 -0
- data/rdoc/doc/DSL_html.html +992 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/BiasNeuron_html.html +617 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/CosineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/InputNeuron_html.html +498 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SigmoidNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/SineNeuron_html.html +413 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes/TanhNeuron_html.html +412 -0
- data/rdoc/doc/NEAT/BasicNeuronTypes_html.html +310 -0
- data/rdoc/doc/NEAT/Controller/NeatSettings_html.html +3324 -0
- data/rdoc/doc/NEAT/Controller_html.html +2212 -0
- data/rdoc/doc/NEAT/Critter/Genotype/Gene_html.html +997 -0
- data/rdoc/doc/NEAT/Critter/Genotype_html.html +1556 -0
- data/rdoc/doc/NEAT/Critter/Phenotype_html.html +687 -0
- data/rdoc/doc/NEAT/Critter_html.html +1037 -0
- data/rdoc/doc/NEAT/DSL_html.html +1349 -0
- data/rdoc/doc/NEAT/Evaluator_html.html +556 -0
- data/rdoc/doc/NEAT/Evolver/CritterOp_html.html +690 -0
- data/rdoc/doc/NEAT/Evolver_html.html +677 -0
- data/rdoc/doc/NEAT/Expressor_html.html +468 -0
- data/rdoc/doc/NEAT/Graph/DependencyResolver_html.html +598 -0
- data/rdoc/doc/NEAT/Graph/GraphException_html.html +299 -0
- data/rdoc/doc/NEAT/Graph_html.html +527 -0
- data/rdoc/doc/NEAT/NeatException_html.html +299 -0
- data/rdoc/doc/NEAT/NeatOb_html.html +671 -0
- data/rdoc/doc/NEAT/Neuron_html.html +1095 -0
- data/rdoc/doc/NEAT/Operator_html.html +337 -0
- data/rdoc/doc/NEAT/Population_html.html +1795 -0
- data/rdoc/doc/NEAT/Trait_html.html +344 -0
- data/rdoc/doc/NEAT_html.html +736 -0
- data/rdoc/doc/_index_html.html +559 -0
- data/rdoc/doc/class_list_html.html +369 -0
- data/rdoc/doc/css/common_css.html +188 -0
- data/rdoc/doc/css/full_list_css.html +243 -0
- data/rdoc/doc/css/style_css.html +530 -0
- data/rdoc/doc/file_list_html.html +240 -0
- data/rdoc/doc/frames_html.html +217 -0
- data/rdoc/doc/index_html.html +559 -0
- data/rdoc/doc/js/app_js.html +423 -0
- data/rdoc/doc/js/full_list_js.html +372 -0
- data/rdoc/doc/js/jquery_js.html +1536 -0
- data/rdoc/doc/method_list_html.html +1375 -0
- data/rdoc/doc/top-level-namespace_html.html +317 -0
- data/rdoc/fonts/Lato-Light.ttf +0 -0
- data/rdoc/fonts/Lato-LightItalic.ttf +0 -0
- data/rdoc/fonts/Lato-Regular.ttf +0 -0
- data/rdoc/fonts/Lato-RegularItalic.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Bold.ttf +0 -0
- data/rdoc/fonts/SourceCodePro-Regular.ttf +0 -0
- data/rdoc/fonts.css +167 -0
- data/rdoc/images/add.png +0 -0
- data/rdoc/images/arrow_up.png +0 -0
- data/rdoc/images/brick.png +0 -0
- data/rdoc/images/brick_link.png +0 -0
- data/rdoc/images/bug.png +0 -0
- data/rdoc/images/bullet_black.png +0 -0
- data/rdoc/images/bullet_toggle_minus.png +0 -0
- data/rdoc/images/bullet_toggle_plus.png +0 -0
- data/rdoc/images/date.png +0 -0
- data/rdoc/images/delete.png +0 -0
- data/rdoc/images/find.png +0 -0
- data/rdoc/images/loadingAnimation.gif +0 -0
- data/rdoc/images/macFFBgHack.png +0 -0
- data/rdoc/images/package.png +0 -0
- data/rdoc/images/page_green.png +0 -0
- data/rdoc/images/page_white_text.png +0 -0
- data/rdoc/images/page_white_width.png +0 -0
- data/rdoc/images/plugin.png +0 -0
- data/rdoc/images/ruby.png +0 -0
- data/rdoc/images/tag_blue.png +0 -0
- data/rdoc/images/tag_green.png +0 -0
- data/rdoc/images/transparent.png +0 -0
- data/rdoc/images/wrench.png +0 -0
- data/rdoc/images/wrench_orange.png +0 -0
- data/rdoc/images/zoom.png +0 -0
- data/rdoc/index.html +282 -0
- data/rdoc/js/darkfish.js +140 -0
- data/rdoc/js/jquery.js +18 -0
- data/rdoc/js/navigation.js +142 -0
- data/rdoc/js/search.js +109 -0
- data/rdoc/js/search_index.js +1 -0
- data/rdoc/js/searcher.js +228 -0
- data/rdoc/rdoc.css +580 -0
- data/rdoc/rubyneat_gemspec.html +387 -0
- data/rdoc/table_of_contents.html +2502 -0
- data/rdoc/xordebug_log.html +170598 -0
- data/rdoc/xorsin_log.html +22569 -0
- data/rubyneat.gemspec +347 -0
- data/rubyneat.gemspec.orig +375 -0
- data/spec/lib/rubyneat/rubyneat_spec.rb +132 -0
- metadata +555 -0
|
@@ -0,0 +1,402 @@
|
|
|
1
|
+
<!DOCTYPE html>
|
|
2
|
+
|
|
3
|
+
<html>
|
|
4
|
+
<head>
|
|
5
|
+
<meta charset="UTF-8">
|
|
6
|
+
|
|
7
|
+
<title>class NEAT::Expressor - rubyneat 0.3.4</title>
|
|
8
|
+
|
|
9
|
+
<link href="../fonts.css" rel="stylesheet">
|
|
10
|
+
<link href="../rdoc.css" rel="stylesheet">
|
|
11
|
+
|
|
12
|
+
<script type="text/javascript">
|
|
13
|
+
var rdoc_rel_prefix = "../";
|
|
14
|
+
</script>
|
|
15
|
+
|
|
16
|
+
<script src="../js/jquery.js"></script>
|
|
17
|
+
<script src="../js/navigation.js"></script>
|
|
18
|
+
<script src="../js/search_index.js"></script>
|
|
19
|
+
<script src="../js/search.js"></script>
|
|
20
|
+
<script src="../js/searcher.js"></script>
|
|
21
|
+
<script src="../js/darkfish.js"></script>
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
<body id="top" role="document" class="class">
|
|
25
|
+
<nav role="navigation">
|
|
26
|
+
<div id="project-navigation">
|
|
27
|
+
<div id="home-section" role="region" title="Quick navigation" class="nav-section">
|
|
28
|
+
<h2>
|
|
29
|
+
<a href="../index.html" rel="home">Home</a>
|
|
30
|
+
</h2>
|
|
31
|
+
|
|
32
|
+
<div id="table-of-contents-navigation">
|
|
33
|
+
<a href="../table_of_contents.html#pages">Pages</a>
|
|
34
|
+
<a href="../table_of_contents.html#classes">Classes</a>
|
|
35
|
+
<a href="../table_of_contents.html#methods">Methods</a>
|
|
36
|
+
</div>
|
|
37
|
+
</div>
|
|
38
|
+
|
|
39
|
+
<div id="search-section" role="search" class="project-section initially-hidden">
|
|
40
|
+
<form action="#" method="get" accept-charset="utf-8">
|
|
41
|
+
<div id="search-field-wrapper">
|
|
42
|
+
<input id="search-field" role="combobox" aria-label="Search"
|
|
43
|
+
aria-autocomplete="list" aria-controls="search-results"
|
|
44
|
+
type="text" name="search" placeholder="Search" spellcheck="false"
|
|
45
|
+
title="Type to search, Up and Down to navigate, Enter to load">
|
|
46
|
+
</div>
|
|
47
|
+
|
|
48
|
+
<ul id="search-results" aria-label="Search Results"
|
|
49
|
+
aria-busy="false" aria-expanded="false"
|
|
50
|
+
aria-atomic="false" class="initially-hidden"></ul>
|
|
51
|
+
</form>
|
|
52
|
+
</div>
|
|
53
|
+
|
|
54
|
+
</div>
|
|
55
|
+
|
|
56
|
+
|
|
57
|
+
|
|
58
|
+
<div id="class-metadata">
|
|
59
|
+
|
|
60
|
+
<div id="parent-class-section" class="nav-section">
|
|
61
|
+
<h3>Parent</h3>
|
|
62
|
+
|
|
63
|
+
|
|
64
|
+
<p class="link">Operator
|
|
65
|
+
|
|
66
|
+
</div>
|
|
67
|
+
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
<!-- Method Quickref -->
|
|
71
|
+
<div id="method-list-section" class="nav-section">
|
|
72
|
+
<h3>Methods</h3>
|
|
73
|
+
|
|
74
|
+
<ul class="link-list" role="directory">
|
|
75
|
+
|
|
76
|
+
<li class="calls-super" ><a href="#method-c-new">::new</a>
|
|
77
|
+
|
|
78
|
+
<li ><a href="#method-i-express-21">#express!</a>
|
|
79
|
+
|
|
80
|
+
<li ><a href="#method-i-express_expression-21">#express_expression!</a>
|
|
81
|
+
|
|
82
|
+
<li ><a href="#method-i-express_genes-21">#express_genes!</a>
|
|
83
|
+
|
|
84
|
+
<li ><a href="#method-i-express_neurons-21">#express_neurons!</a>
|
|
85
|
+
|
|
86
|
+
</ul>
|
|
87
|
+
</div>
|
|
88
|
+
|
|
89
|
+
</div>
|
|
90
|
+
</nav>
|
|
91
|
+
|
|
92
|
+
<main role="main" aria-labelledby="class-NEAT::Expressor">
|
|
93
|
+
<h1 id="class-NEAT::Expressor" class="class">
|
|
94
|
+
class NEAT::Expressor
|
|
95
|
+
</h1>
|
|
96
|
+
|
|
97
|
+
<section class="description">
|
|
98
|
+
|
|
99
|
+
<h1 id="class-NEAT::Expressor-label-Basis+of+all+expressors.+">Basis of all expressors. <span><a href="#class-NEAT::Expressor-label-Basis+of+all+expressors.+">¶</a> <a href="#documentation">↑</a></span></h1>
|
|
100
|
+
|
|
101
|
+
<pre>Expressor object turn genotypes into phenotypes.</pre>
|
|
102
|
+
|
|
103
|
+
</section>
|
|
104
|
+
|
|
105
|
+
|
|
106
|
+
|
|
107
|
+
|
|
108
|
+
<section id="5Buntitled-5D" class="documentation-section">
|
|
109
|
+
|
|
110
|
+
|
|
111
|
+
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
|
|
118
|
+
<section id="public-class-5Buntitled-5D-method-details" class="method-section">
|
|
119
|
+
<header>
|
|
120
|
+
<h3>Public Class Methods</h3>
|
|
121
|
+
</header>
|
|
122
|
+
|
|
123
|
+
|
|
124
|
+
<div id="method-c-new" class="method-detail ">
|
|
125
|
+
|
|
126
|
+
<div class="method-heading">
|
|
127
|
+
<span class="method-name">new</span><span
|
|
128
|
+
class="method-args">(c)</span>
|
|
129
|
+
|
|
130
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
131
|
+
|
|
132
|
+
</div>
|
|
133
|
+
|
|
134
|
+
|
|
135
|
+
<div class="method-description">
|
|
136
|
+
|
|
137
|
+
|
|
138
|
+
|
|
139
|
+
|
|
140
|
+
<div class="method-calls-super">
|
|
141
|
+
Calls superclass method
|
|
142
|
+
|
|
143
|
+
</div>
|
|
144
|
+
|
|
145
|
+
|
|
146
|
+
|
|
147
|
+
<div class="method-source-code" id="new-source">
|
|
148
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 8</span>
|
|
149
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">c</span>)
|
|
150
|
+
<span class="ruby-keyword">super</span>
|
|
151
|
+
<span class="ruby-keyword">end</span></pre>
|
|
152
|
+
</div>
|
|
153
|
+
|
|
154
|
+
</div>
|
|
155
|
+
|
|
156
|
+
|
|
157
|
+
|
|
158
|
+
|
|
159
|
+
</div>
|
|
160
|
+
|
|
161
|
+
|
|
162
|
+
</section>
|
|
163
|
+
|
|
164
|
+
<section id="public-instance-5Buntitled-5D-method-details" class="method-section">
|
|
165
|
+
<header>
|
|
166
|
+
<h3>Public Instance Methods</h3>
|
|
167
|
+
</header>
|
|
168
|
+
|
|
169
|
+
|
|
170
|
+
<div id="method-i-express-21" class="method-detail ">
|
|
171
|
+
|
|
172
|
+
<div class="method-heading">
|
|
173
|
+
<span class="method-name">express!</span><span
|
|
174
|
+
class="method-args">(critter)</span>
|
|
175
|
+
|
|
176
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
177
|
+
|
|
178
|
+
</div>
|
|
179
|
+
|
|
180
|
+
|
|
181
|
+
<div class="method-description">
|
|
182
|
+
|
|
183
|
+
<p>Take the genotype of the critter and create a phenotype from the genotype.</p>
|
|
184
|
+
|
|
185
|
+
<p>In the phenotype, it creates a function called stimulate(), which is called
|
|
186
|
+
with the input parameters and returns a response in the form of a response
|
|
187
|
+
hash (which corresponds directly to the output neurons).</p>
|
|
188
|
+
|
|
189
|
+
<p>This implementation assumes an acyclic graph (feed forward) and cannot
|
|
190
|
+
handle cycles at all. Later we may fix this or create a type of <a
|
|
191
|
+
href="Expressor.html">Expressor</a> that can.</p>
|
|
192
|
+
|
|
193
|
+
|
|
194
|
+
|
|
195
|
+
|
|
196
|
+
<div class="method-source-code" id="express-21-source">
|
|
197
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 23</span>
|
|
198
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express!</span>(<span class="ruby-identifier">critter</span>)
|
|
199
|
+
<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">ready_for_expression!</span>
|
|
200
|
+
<span class="ruby-identifier">express_neurons!</span> <span class="ruby-identifier">critter</span>
|
|
201
|
+
<span class="ruby-identifier">express_genes!</span> <span class="ruby-identifier">critter</span>
|
|
202
|
+
<span class="ruby-identifier">express_expression!</span> <span class="ruby-identifier">critter</span>
|
|
203
|
+
<span class="ruby-keyword">end</span></pre>
|
|
204
|
+
</div>
|
|
205
|
+
|
|
206
|
+
</div>
|
|
207
|
+
|
|
208
|
+
|
|
209
|
+
|
|
210
|
+
|
|
211
|
+
</div>
|
|
212
|
+
|
|
213
|
+
|
|
214
|
+
</section>
|
|
215
|
+
|
|
216
|
+
<section id="protected-instance-5Buntitled-5D-method-details" class="method-section">
|
|
217
|
+
<header>
|
|
218
|
+
<h3>Protected Instance Methods</h3>
|
|
219
|
+
</header>
|
|
220
|
+
|
|
221
|
+
|
|
222
|
+
<div id="method-i-express_expression-21" class="method-detail ">
|
|
223
|
+
|
|
224
|
+
<div class="method-heading">
|
|
225
|
+
<span class="method-name">express_expression!</span><span
|
|
226
|
+
class="method-args">(critter)</span>
|
|
227
|
+
|
|
228
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
229
|
+
|
|
230
|
+
</div>
|
|
231
|
+
|
|
232
|
+
|
|
233
|
+
<div class="method-description">
|
|
234
|
+
|
|
235
|
+
|
|
236
|
+
|
|
237
|
+
|
|
238
|
+
|
|
239
|
+
|
|
240
|
+
<div class="method-source-code" id="express_expression-21-source">
|
|
241
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 106</span>
|
|
242
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express_expression!</span>(<span class="ruby-identifier">critter</span>)
|
|
243
|
+
<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">phenotype</span>.<span class="ruby-identifier">express!</span>
|
|
244
|
+
<span class="ruby-keyword">end</span></pre>
|
|
245
|
+
</div>
|
|
246
|
+
|
|
247
|
+
</div>
|
|
248
|
+
|
|
249
|
+
|
|
250
|
+
|
|
251
|
+
|
|
252
|
+
</div>
|
|
253
|
+
|
|
254
|
+
|
|
255
|
+
<div id="method-i-express_genes-21" class="method-detail ">
|
|
256
|
+
|
|
257
|
+
<div class="method-heading">
|
|
258
|
+
<span class="method-name">express_genes!</span><span
|
|
259
|
+
class="method-args">(critter)</span>
|
|
260
|
+
|
|
261
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
262
|
+
|
|
263
|
+
</div>
|
|
264
|
+
|
|
265
|
+
|
|
266
|
+
<div class="method-description">
|
|
267
|
+
|
|
268
|
+
<h1 id="method-i-express_genes-21-label-Expression+of+the+Genotype+as+a+Phenotype.">Expression of the Genotype as a Phenotype.<span><a href="#method-i-express_genes-21-label-Expression+of+the+Genotype+as+a+Phenotype.">¶</a> <a href="#documentation">↑</a></span></h1>
|
|
269
|
+
|
|
270
|
+
<pre>What this really does is create the function that calls
|
|
271
|
+
all the functions.
|
|
272
|
+
|
|
273
|
+
This makes use of the Graph plugin for Neurons.</pre>
|
|
274
|
+
|
|
275
|
+
<h1 id="method-i-express_genes-21-label-Recurrency+and+Expression+of+Genes">Recurrency and Expression of Genes<span><a href="#method-i-express_genes-21-label-Recurrency+and+Expression+of+Genes">¶</a> <a href="#documentation">↑</a></span></h1>
|
|
276
|
+
|
|
277
|
+
<pre>A simple approach has been taken here to allow for recurrency in
|
|
278
|
+
our Critters. Basically, a looping construct has been put around the
|
|
279
|
+
activation of the neurons so that recurrency can be done in 2 ways:
|
|
280
|
+
1) Via yielding, thus treating the stimulus function as a enumerable.
|
|
281
|
+
In this approach, one would call the Critter's phenotype with a block of
|
|
282
|
+
code that would accept the output of the net. It would return 'true' to
|
|
283
|
+
continue the iteration, or 'false' to end the iteration.
|
|
284
|
+
2) Via multiple calls to the Pheontype instance:
|
|
285
|
+
Since the value of the prior activation is preserved in the instance variables
|
|
286
|
+
of the phenotype, subsequent activations will iterate the network.</pre>
|
|
287
|
+
|
|
288
|
+
<h2 id="method-i-express_genes-21-label-Cavets+to+recurrent+activation">Cavets to recurrent activation<span><a href="#method-i-express_genes-21-label-Cavets+to+recurrent+activation">¶</a> <a href="#documentation">↑</a></span></h2>
|
|
289
|
+
|
|
290
|
+
<pre>For (2) above, the input neurons would be overwritten on each subsequent call.
|
|
291
|
+
Since we do not allow recurrent connections to input neurons anyway, this should
|
|
292
|
+
not be an issue, though we may allow for this at a future date.</pre>
|
|
293
|
+
|
|
294
|
+
|
|
295
|
+
|
|
296
|
+
|
|
297
|
+
<div class="method-source-code" id="express_genes-21-source">
|
|
298
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 58</span>
|
|
299
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express_genes!</span>(<span class="ruby-identifier">critter</span>)
|
|
300
|
+
<span class="ruby-identifier">g</span> = <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>
|
|
301
|
+
<span class="ruby-identifier">p</span> = <span class="ruby-identifier">critter</span>.<span class="ruby-identifier">phenotype</span>
|
|
302
|
+
|
|
303
|
+
<span class="ruby-identifier">init_code</span> = <span class="ruby-string">"\n def initialize_neurons\n"</span>
|
|
304
|
+
|
|
305
|
+
<span class="ruby-comment"># 'stimulate' function call (really should be 'activate', but we'll reserve this for something else)</span>
|
|
306
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-node">" def #{NEAT::STIMULUS}("</span>
|
|
307
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">reject</span>{ <span class="ruby-operator">|</span><span class="ruby-identifier">sym</span><span class="ruby-operator">|</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>[<span class="ruby-identifier">sym</span>].<span class="ruby-identifier">bias?</span> }.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-identifier">sym</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">", "</span>)
|
|
308
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">")\n"</span>
|
|
309
|
+
|
|
310
|
+
<span class="ruby-comment"># Assign all the parameters to instance variables.</span>
|
|
311
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_inputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-node">" @#{sym} = #{sym}\n"</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">""</span>)
|
|
312
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" loop {\n"</span>
|
|
313
|
+
|
|
314
|
+
<span class="ruby-comment"># Resolve the order in which we shall call the neurons</span>
|
|
315
|
+
<span class="ruby-comment"># TODO handle the dependency list if it comes back!</span>
|
|
316
|
+
<span class="ruby-ivar">@resolved</span>, <span class="ruby-ivar">@dependencies</span> = <span class="ruby-constant">NEAT</span><span class="ruby-operator">::</span><span class="ruby-constant">Graph</span><span class="ruby-operator">::</span><span class="ruby-constant">DependencyResolver</span>[<span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">s</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-identifier">neu</span>}].<span class="ruby-identifier">resolve</span>
|
|
317
|
+
|
|
318
|
+
<span class="ruby-comment"># And now call them in that order!</span>
|
|
319
|
+
<span class="ruby-ivar">@resolved</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">neu</span><span class="ruby-operator">|</span>
|
|
320
|
+
<span class="ruby-keyword">unless</span> <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">input?</span>
|
|
321
|
+
<span class="ruby-identifier">init_code</span> <span class="ruby-operator">+=</span> <span class="ruby-node">" @#{neu.name} = 0\n"</span>
|
|
322
|
+
<span class="ruby-keyword">if</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_gene_map</span>.<span class="ruby-identifier">member?</span> <span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>
|
|
323
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-node">" @#{neu.name} = #{neu.name}("</span>
|
|
324
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_gene_map</span>[<span class="ruby-identifier">neu</span>.<span class="ruby-identifier">name</span>].<span class="ruby-identifier">map</span>{ <span class="ruby-operator">|</span><span class="ruby-identifier">gene</span><span class="ruby-operator">|</span>
|
|
325
|
+
<span class="ruby-string">"%s * @%s"</span> <span class="ruby-operator">%</span> [<span class="ruby-identifier">gene</span>.<span class="ruby-identifier">weight</span>, <span class="ruby-identifier">gene</span>.<span class="ruby-identifier">in_neuron</span>]
|
|
326
|
+
}.<span class="ruby-identifier">join</span>(<span class="ruby-string">", "</span>) <span class="ruby-operator">+</span> <span class="ruby-string">")\n"</span>
|
|
327
|
+
<span class="ruby-keyword">else</span>
|
|
328
|
+
<span class="ruby-identifier">g</span>.<span class="ruby-identifier">dangling_neurons</span> = <span class="ruby-keyword">true</span>
|
|
329
|
+
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-node">"Dangling neuron in critter #{critter} -- #{neu}"</span>
|
|
330
|
+
<span class="ruby-keyword">end</span>
|
|
331
|
+
<span class="ruby-keyword">end</span>
|
|
332
|
+
<span class="ruby-keyword">end</span>
|
|
333
|
+
<span class="ruby-identifier">init_code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" end\n"</span>
|
|
334
|
+
|
|
335
|
+
<span class="ruby-comment"># And now return the result as a vector of outputs.</span>
|
|
336
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" @_outvec = ["</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">g</span>.<span class="ruby-identifier">neural_outputs</span>.<span class="ruby-identifier">map</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">sym</span>, <span class="ruby-identifier">neu</span><span class="ruby-operator">|</span> <span class="ruby-node">"@#{sym}"</span>}.<span class="ruby-identifier">join</span>(<span class="ruby-string">','</span>) <span class="ruby-operator">+</span> <span class="ruby-string">"]\n"</span>
|
|
337
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" break unless block_given?\n"</span>
|
|
338
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" break unless yield @_outvec\n"</span>
|
|
339
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" }\n"</span>
|
|
340
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" @_outvec\n"</span>
|
|
341
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-string">" end\n"</span>
|
|
342
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">init_code</span>
|
|
343
|
+
<span class="ruby-identifier">log</span>.<span class="ruby-identifier">debug</span> <span class="ruby-identifier">p</span>.<span class="ruby-identifier">code</span>
|
|
344
|
+
<span class="ruby-identifier">p</span>.<span class="ruby-identifier">express!</span>
|
|
345
|
+
<span class="ruby-keyword">end</span></pre>
|
|
346
|
+
</div>
|
|
347
|
+
|
|
348
|
+
</div>
|
|
349
|
+
|
|
350
|
+
|
|
351
|
+
|
|
352
|
+
|
|
353
|
+
</div>
|
|
354
|
+
|
|
355
|
+
|
|
356
|
+
<div id="method-i-express_neurons-21" class="method-detail ">
|
|
357
|
+
|
|
358
|
+
<div class="method-heading">
|
|
359
|
+
<span class="method-name">express_neurons!</span><span
|
|
360
|
+
class="method-args">(critter)</span>
|
|
361
|
+
|
|
362
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
363
|
+
|
|
364
|
+
</div>
|
|
365
|
+
|
|
366
|
+
|
|
367
|
+
<div class="method-description">
|
|
368
|
+
|
|
369
|
+
<p>Express Neurons as methods</p>
|
|
370
|
+
|
|
371
|
+
|
|
372
|
+
|
|
373
|
+
|
|
374
|
+
<div class="method-source-code" id="express_neurons-21-source">
|
|
375
|
+
<pre><span class="ruby-comment"># File lib/rubyneat/expressor.rb, line 32</span>
|
|
376
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">express_neurons!</span>(<span class="ruby-identifier">critter</span>)
|
|
377
|
+
<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">genotype</span>.<span class="ruby-identifier">neurons</span>.<span class="ruby-identifier">each</span> <span class="ruby-keyword">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">name</span>, <span class="ruby-identifier">neuron</span><span class="ruby-operator">|</span>
|
|
378
|
+
<span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">express</span>(<span class="ruby-identifier">critter</span>.<span class="ruby-identifier">phenotype</span>) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">input?</span> <span class="ruby-keyword">and</span> <span class="ruby-keyword">not</span> <span class="ruby-identifier">neuron</span>.<span class="ruby-identifier">bias?</span>
|
|
379
|
+
<span class="ruby-keyword">end</span>
|
|
380
|
+
<span class="ruby-keyword">end</span></pre>
|
|
381
|
+
</div>
|
|
382
|
+
|
|
383
|
+
</div>
|
|
384
|
+
|
|
385
|
+
|
|
386
|
+
|
|
387
|
+
|
|
388
|
+
</div>
|
|
389
|
+
|
|
390
|
+
|
|
391
|
+
</section>
|
|
392
|
+
|
|
393
|
+
</section>
|
|
394
|
+
</main>
|
|
395
|
+
|
|
396
|
+
|
|
397
|
+
<footer id="validator-badges" role="contentinfo">
|
|
398
|
+
<p><a href="http://validator.w3.org/check/referer">Validate</a>
|
|
399
|
+
<p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
|
|
400
|
+
<p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
|
|
401
|
+
</footer>
|
|
402
|
+
|