tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -7,10 +7,46 @@
7
7
  // Public License v. 2.0. If a copy of the MPL was not distributed
8
8
  // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
9
 
10
+ // Function void Eigen::AlignedBox::transform(const Transform& transform)
11
+ // is provided under the following license agreement:
12
+ //
13
+ // Software License Agreement (BSD License)
14
+ //
15
+ // Copyright (c) 2011-2014, Willow Garage, Inc.
16
+ // Copyright (c) 2014-2015, Open Source Robotics Foundation
17
+ // All rights reserved.
18
+ //
19
+ // Redistribution and use in source and binary forms, with or without
20
+ // modification, are permitted provided that the following conditions
21
+ // are met:
22
+ //
23
+ // * Redistributions of source code must retain the above copyright
24
+ // notice, this list of conditions and the following disclaimer.
25
+ // * Redistributions in binary form must reproduce the above
26
+ // copyright notice, this list of conditions and the following
27
+ // disclaimer in the documentation and/or other materials provided
28
+ // with the distribution.
29
+ // * Neither the name of Open Source Robotics Foundation nor the names of its
30
+ // contributors may be used to endorse or promote products derived
31
+ // from this software without specific prior written permission.
32
+ //
33
+ // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
34
+ // "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
35
+ // LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
36
+ // FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
37
+ // COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
38
+ // INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
39
+ // BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
40
+ // LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
41
+ // CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
42
+ // LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
43
+ // ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
44
+ // POSSIBILITY OF SUCH DAMAGE.
45
+
10
46
  #ifndef EIGEN_ALIGNEDBOX_H
11
47
  #define EIGEN_ALIGNEDBOX_H
12
48
 
13
- namespace Eigen {
49
+ namespace Eigen {
14
50
 
15
51
  /** \geometry_module \ingroup Geometry_Module
16
52
  *
@@ -63,7 +99,7 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
63
99
 
64
100
  /** Default constructor initializing a null box. */
65
101
  EIGEN_DEVICE_FUNC inline AlignedBox()
66
- { if (AmbientDimAtCompileTime!=Dynamic) setEmpty(); }
102
+ { if (EIGEN_CONST_CONDITIONAL(AmbientDimAtCompileTime!=Dynamic)) setEmpty(); }
67
103
 
68
104
  /** Constructs a null box with \a _dim the dimension of the ambient space. */
69
105
  EIGEN_DEVICE_FUNC inline explicit AlignedBox(Index _dim) : m_min(_dim), m_max(_dim)
@@ -231,7 +267,7 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
231
267
  {return AlignedBox(m_min.cwiseMax(b.m_min), m_max.cwiseMin(b.m_max)); }
232
268
 
233
269
  /** Returns an AlignedBox that is the union of \a b and \c *this.
234
- * \note Merging with an empty box may result in a box bigger than \c *this.
270
+ * \note Merging with an empty box may result in a box bigger than \c *this.
235
271
  * \sa extend(const AlignedBox&) */
236
272
  EIGEN_DEVICE_FUNC inline AlignedBox merged(const AlignedBox& b) const
237
273
  { return AlignedBox(m_min.cwiseMin(b.m_min), m_max.cwiseMax(b.m_max)); }
@@ -246,6 +282,15 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
246
282
  return *this;
247
283
  }
248
284
 
285
+ /** \returns a copy of \c *this translated by the vector \a t. */
286
+ template<typename Derived>
287
+ EIGEN_DEVICE_FUNC inline AlignedBox translated(const MatrixBase<Derived>& a_t) const
288
+ {
289
+ AlignedBox result(m_min, m_max);
290
+ result.translate(a_t);
291
+ return result;
292
+ }
293
+
249
294
  /** \returns the squared distance between the point \a p and the box \c *this,
250
295
  * and zero if \a p is inside the box.
251
296
  * \sa exteriorDistance(const MatrixBase&), squaredExteriorDistance(const AlignedBox&)
@@ -265,14 +310,63 @@ EIGEN_MAKE_ALIGNED_OPERATOR_NEW_IF_VECTORIZABLE_FIXED_SIZE(_Scalar,_AmbientDim)
265
310
  */
266
311
  template<typename Derived>
267
312
  EIGEN_DEVICE_FUNC inline NonInteger exteriorDistance(const MatrixBase<Derived>& p) const
268
- { EIGEN_USING_STD_MATH(sqrt) return sqrt(NonInteger(squaredExteriorDistance(p))); }
313
+ { EIGEN_USING_STD(sqrt) return sqrt(NonInteger(squaredExteriorDistance(p))); }
269
314
 
270
315
  /** \returns the distance between the boxes \a b and \c *this,
271
316
  * and zero if the boxes intersect.
272
317
  * \sa squaredExteriorDistance(const AlignedBox&), exteriorDistance(const MatrixBase&)
273
318
  */
274
319
  EIGEN_DEVICE_FUNC inline NonInteger exteriorDistance(const AlignedBox& b) const
275
- { EIGEN_USING_STD_MATH(sqrt) return sqrt(NonInteger(squaredExteriorDistance(b))); }
320
+ { EIGEN_USING_STD(sqrt) return sqrt(NonInteger(squaredExteriorDistance(b))); }
321
+
322
+ /**
323
+ * Specialization of transform for pure translation.
324
+ */
325
+ template<int Mode, int Options>
326
+ EIGEN_DEVICE_FUNC inline void transform(
327
+ const typename Transform<Scalar, AmbientDimAtCompileTime, Mode, Options>::TranslationType& translation)
328
+ {
329
+ this->translate(translation);
330
+ }
331
+
332
+ /**
333
+ * Transforms this box by \a transform and recomputes it to
334
+ * still be an axis-aligned box.
335
+ *
336
+ * \note This method is provided under BSD license (see the top of this file).
337
+ */
338
+ template<int Mode, int Options>
339
+ EIGEN_DEVICE_FUNC inline void transform(const Transform<Scalar, AmbientDimAtCompileTime, Mode, Options>& transform)
340
+ {
341
+ // Only Affine and Isometry transforms are currently supported.
342
+ EIGEN_STATIC_ASSERT(Mode == Affine || Mode == AffineCompact || Mode == Isometry, THIS_METHOD_IS_ONLY_FOR_SPECIFIC_TRANSFORMATIONS);
343
+
344
+ // Method adapted from FCL src/shape/geometric_shapes_utility.cpp#computeBV<AABB, Box>(...)
345
+ // https://github.com/flexible-collision-library/fcl/blob/fcl-0.4/src/shape/geometric_shapes_utility.cpp#L292
346
+ //
347
+ // Here's a nice explanation why it works: https://zeuxcg.org/2010/10/17/aabb-from-obb-with-component-wise-abs/
348
+
349
+ // two times rotated extent
350
+ const VectorType rotated_extent_2 = transform.linear().cwiseAbs() * sizes();
351
+ // two times new center
352
+ const VectorType rotated_center_2 = transform.linear() * (this->m_max + this->m_min) +
353
+ Scalar(2) * transform.translation();
354
+
355
+ this->m_max = (rotated_center_2 + rotated_extent_2) / Scalar(2);
356
+ this->m_min = (rotated_center_2 - rotated_extent_2) / Scalar(2);
357
+ }
358
+
359
+ /**
360
+ * \returns a copy of \c *this transformed by \a transform and recomputed to
361
+ * still be an axis-aligned box.
362
+ */
363
+ template<int Mode, int Options>
364
+ EIGEN_DEVICE_FUNC AlignedBox transformed(const Transform<Scalar, AmbientDimAtCompileTime, Mode, Options>& transform) const
365
+ {
366
+ AlignedBox result(m_min, m_max);
367
+ result.transform(transform);
368
+ return result;
369
+ }
276
370
 
277
371
  /** \returns \c *this with scalar type casted to \a NewScalarType
278
372
  *
@@ -169,8 +169,8 @@ template<typename Scalar>
169
169
  template<typename QuatDerived>
170
170
  EIGEN_DEVICE_FUNC AngleAxis<Scalar>& AngleAxis<Scalar>::operator=(const QuaternionBase<QuatDerived>& q)
171
171
  {
172
- EIGEN_USING_STD_MATH(atan2)
173
- EIGEN_USING_STD_MATH(abs)
172
+ EIGEN_USING_STD(atan2)
173
+ EIGEN_USING_STD(abs)
174
174
  Scalar n = q.vec().norm();
175
175
  if(n<NumTraits<Scalar>::epsilon())
176
176
  n = q.vec().stableNorm();
@@ -217,8 +217,8 @@ template<typename Scalar>
217
217
  typename AngleAxis<Scalar>::Matrix3
218
218
  EIGEN_DEVICE_FUNC AngleAxis<Scalar>::toRotationMatrix(void) const
219
219
  {
220
- EIGEN_USING_STD_MATH(sin)
221
- EIGEN_USING_STD_MATH(cos)
220
+ EIGEN_USING_STD(sin)
221
+ EIGEN_USING_STD(cos)
222
222
  Matrix3 res;
223
223
  Vector3 sin_axis = sin(m_angle) * m_axis;
224
224
  Scalar c = cos(m_angle);
@@ -36,9 +36,9 @@ template<typename Derived>
36
36
  EIGEN_DEVICE_FUNC inline Matrix<typename MatrixBase<Derived>::Scalar,3,1>
37
37
  MatrixBase<Derived>::eulerAngles(Index a0, Index a1, Index a2) const
38
38
  {
39
- EIGEN_USING_STD_MATH(atan2)
40
- EIGEN_USING_STD_MATH(sin)
41
- EIGEN_USING_STD_MATH(cos)
39
+ EIGEN_USING_STD(atan2)
40
+ EIGEN_USING_STD(sin)
41
+ EIGEN_USING_STD(cos)
42
42
  /* Implemented from Graphics Gems IV */
43
43
  EIGEN_STATIC_ASSERT_MATRIX_SPECIFIC_SIZE(Derived,3,3)
44
44
 
@@ -10,7 +10,7 @@
10
10
  #ifndef EIGEN_HOMOGENEOUS_H
11
11
  #define EIGEN_HOMOGENEOUS_H
12
12
 
13
- namespace Eigen {
13
+ namespace Eigen {
14
14
 
15
15
  /** \geometry_module \ingroup Geometry_Module
16
16
  *
@@ -72,9 +72,11 @@ template<typename MatrixType,int _Direction> class Homogeneous
72
72
  : m_matrix(matrix)
73
73
  {}
74
74
 
75
- EIGEN_DEVICE_FUNC inline Index rows() const { return m_matrix.rows() + (int(Direction)==Vertical ? 1 : 0); }
76
- EIGEN_DEVICE_FUNC inline Index cols() const { return m_matrix.cols() + (int(Direction)==Horizontal ? 1 : 0); }
77
-
75
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
76
+ inline Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows() + (int(Direction)==Vertical ? 1 : 0); }
77
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
78
+ inline Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols() + (int(Direction)==Horizontal ? 1 : 0); }
79
+
78
80
  EIGEN_DEVICE_FUNC const NestedExpression& nestedExpression() const { return m_matrix; }
79
81
 
80
82
  template<typename Rhs>
@@ -262,8 +264,10 @@ struct homogeneous_left_product_impl<Homogeneous<MatrixType,Vertical>,Lhs>
262
264
  m_rhs(rhs)
263
265
  {}
264
266
 
265
- EIGEN_DEVICE_FUNC inline Index rows() const { return m_lhs.rows(); }
266
- EIGEN_DEVICE_FUNC inline Index cols() const { return m_rhs.cols(); }
267
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
268
+ inline Index rows() const EIGEN_NOEXCEPT { return m_lhs.rows(); }
269
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
270
+ inline Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
267
271
 
268
272
  template<typename Dest> EIGEN_DEVICE_FUNC void evalTo(Dest& dst) const
269
273
  {
@@ -300,8 +304,8 @@ struct homogeneous_right_product_impl<Homogeneous<MatrixType,Horizontal>,Rhs>
300
304
  : m_lhs(lhs), m_rhs(rhs)
301
305
  {}
302
306
 
303
- EIGEN_DEVICE_FUNC inline Index rows() const { return m_lhs.rows(); }
304
- EIGEN_DEVICE_FUNC inline Index cols() const { return m_rhs.cols(); }
307
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR inline Index rows() const EIGEN_NOEXCEPT { return m_lhs.rows(); }
308
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR inline Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
305
309
 
306
310
  template<typename Dest> EIGEN_DEVICE_FUNC void evalTo(Dest& dst) const
307
311
  {
@@ -322,7 +326,7 @@ template<typename ArgType,int Direction>
322
326
  struct evaluator_traits<Homogeneous<ArgType,Direction> >
323
327
  {
324
328
  typedef typename storage_kind_to_evaluator_kind<typename ArgType::StorageKind>::Kind Kind;
325
- typedef HomogeneousShape Shape;
329
+ typedef HomogeneousShape Shape;
326
330
  };
327
331
 
328
332
  template<> struct AssignmentKind<DenseShape,HomogeneousShape> { typedef Dense2Dense Kind; };
@@ -414,7 +418,7 @@ struct product_evaluator<Product<Lhs, Rhs, LazyProduct>, ProductTag, Homogeneous
414
418
  typedef typename helper::ConstantBlock ConstantBlock;
415
419
  typedef typename helper::Xpr RefactoredXpr;
416
420
  typedef evaluator<RefactoredXpr> Base;
417
-
421
+
418
422
  EIGEN_DEVICE_FUNC explicit product_evaluator(const XprType& xpr)
419
423
  : Base( xpr.lhs().nestedExpression() .lazyProduct( xpr.rhs().template topRows<helper::Dim>(xpr.lhs().nestedExpression().cols()) )
420
424
  + ConstantBlock(xpr.rhs().row(xpr.rhs().rows()-1),xpr.lhs().rows(), 1) )
@@ -467,7 +471,7 @@ struct product_evaluator<Product<Lhs, Rhs, LazyProduct>, ProductTag, DenseShape,
467
471
  typedef typename helper::ConstantBlock ConstantBlock;
468
472
  typedef typename helper::Xpr RefactoredXpr;
469
473
  typedef evaluator<RefactoredXpr> Base;
470
-
474
+
471
475
  EIGEN_DEVICE_FUNC explicit product_evaluator(const XprType& xpr)
472
476
  : Base( xpr.lhs().template leftCols<helper::Dim>(xpr.rhs().nestedExpression().rows()) .lazyProduct( xpr.rhs().nestedExpression() )
473
477
  + ConstantBlock(xpr.lhs().col(xpr.lhs().cols()-1),1,xpr.rhs().cols()) )
@@ -119,7 +119,7 @@ public:
119
119
  * If the dimension of the ambient space is greater than 2, then there isn't uniqueness,
120
120
  * so an arbitrary choice is made.
121
121
  */
122
- // FIXME to be consitent with the rest this could be implemented as a static Through function ??
122
+ // FIXME to be consistent with the rest this could be implemented as a static Through function ??
123
123
  EIGEN_DEVICE_FUNC explicit Hyperplane(const ParametrizedLine<Scalar, AmbientDimAtCompileTime>& parametrized)
124
124
  {
125
125
  normal() = parametrized.direction().unitOrthogonal();
@@ -27,9 +27,10 @@ namespace Eigen {
27
27
  template<typename Derived>
28
28
  template<typename OtherDerived>
29
29
  #ifndef EIGEN_PARSED_BY_DOXYGEN
30
- EIGEN_DEVICE_FUNC inline typename MatrixBase<Derived>::template cross_product_return_type<OtherDerived>::type
30
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
31
+ typename MatrixBase<Derived>::template cross_product_return_type<OtherDerived>::type
31
32
  #else
32
- inline typename MatrixBase<Derived>::PlainObject
33
+ typename MatrixBase<Derived>::PlainObject
33
34
  #endif
34
35
  MatrixBase<Derived>::cross(const MatrixBase<OtherDerived>& other) const
35
36
  {
@@ -87,7 +87,7 @@ public:
87
87
  /** \returns the distance of a point \a p to its projection onto the line \c *this.
88
88
  * \sa squaredDistance()
89
89
  */
90
- EIGEN_DEVICE_FUNC RealScalar distance(const VectorType& p) const { EIGEN_USING_STD_MATH(sqrt) return sqrt(squaredDistance(p)); }
90
+ EIGEN_DEVICE_FUNC RealScalar distance(const VectorType& p) const { EIGEN_USING_STD(sqrt) return sqrt(squaredDistance(p)); }
91
91
 
92
92
  /** \returns the projection of a point \a p onto the line \c *this. */
93
93
  EIGEN_DEVICE_FUNC VectorType projection(const VectorType& p) const
@@ -104,7 +104,44 @@ public:
104
104
  template <int OtherOptions>
105
105
  EIGEN_DEVICE_FUNC VectorType intersectionPoint(const Hyperplane<_Scalar, _AmbientDim, OtherOptions>& hyperplane) const;
106
106
 
107
- /** \returns \c *this with scalar type casted to \a NewScalarType
107
+ /** Applies the transformation matrix \a mat to \c *this and returns a reference to \c *this.
108
+ *
109
+ * \param mat the Dim x Dim transformation matrix
110
+ * \param traits specifies whether the matrix \a mat represents an #Isometry
111
+ * or a more generic #Affine transformation. The default is #Affine.
112
+ */
113
+ template<typename XprType>
114
+ EIGEN_DEVICE_FUNC inline ParametrizedLine& transform(const MatrixBase<XprType>& mat, TransformTraits traits = Affine)
115
+ {
116
+ if (traits==Affine)
117
+ direction() = (mat * direction()).normalized();
118
+ else if (traits==Isometry)
119
+ direction() = mat * direction();
120
+ else
121
+ {
122
+ eigen_assert(0 && "invalid traits value in ParametrizedLine::transform()");
123
+ }
124
+ origin() = mat * origin();
125
+ return *this;
126
+ }
127
+
128
+ /** Applies the transformation \a t to \c *this and returns a reference to \c *this.
129
+ *
130
+ * \param t the transformation of dimension Dim
131
+ * \param traits specifies whether the transformation \a t represents an #Isometry
132
+ * or a more generic #Affine transformation. The default is #Affine.
133
+ * Other kind of transformations are not supported.
134
+ */
135
+ template<int TrOptions>
136
+ EIGEN_DEVICE_FUNC inline ParametrizedLine& transform(const Transform<Scalar,AmbientDimAtCompileTime,Affine,TrOptions>& t,
137
+ TransformTraits traits = Affine)
138
+ {
139
+ transform(t.linear(), traits);
140
+ origin() += t.translation();
141
+ return *this;
142
+ }
143
+
144
+ /** \returns \c *this with scalar type casted to \a NewScalarType
108
145
  *
109
146
  * Note that if \a NewScalarType is equal to the current scalar type of \c *this
110
147
  * then this function smartly returns a const reference to \c *this.
@@ -141,7 +141,7 @@ class QuaternionBase : public RotationBase<Derived, 3>
141
141
  template<class OtherDerived> EIGEN_DEVICE_FUNC Scalar angularDistance(const QuaternionBase<OtherDerived>& other) const;
142
142
 
143
143
  /** \returns an equivalent 3x3 rotation matrix */
144
- EIGEN_DEVICE_FUNC Matrix3 toRotationMatrix() const;
144
+ EIGEN_DEVICE_FUNC inline Matrix3 toRotationMatrix() const;
145
145
 
146
146
  /** \returns the quaternion which transform \a a into \a b through a rotation */
147
147
  template<typename Derived1, typename Derived2>
@@ -158,6 +158,22 @@ class QuaternionBase : public RotationBase<Derived, 3>
158
158
 
159
159
  template<class OtherDerived> EIGEN_DEVICE_FUNC Quaternion<Scalar> slerp(const Scalar& t, const QuaternionBase<OtherDerived>& other) const;
160
160
 
161
+ /** \returns true if each coefficients of \c *this and \a other are all exactly equal.
162
+ * \warning When using floating point scalar values you probably should rather use a
163
+ * fuzzy comparison such as isApprox()
164
+ * \sa isApprox(), operator!= */
165
+ template<class OtherDerived>
166
+ EIGEN_DEVICE_FUNC inline bool operator==(const QuaternionBase<OtherDerived>& other) const
167
+ { return coeffs() == other.coeffs(); }
168
+
169
+ /** \returns true if at least one pair of coefficients of \c *this and \a other are not exactly equal to each other.
170
+ * \warning When using floating point scalar values you probably should rather use a
171
+ * fuzzy comparison such as isApprox()
172
+ * \sa isApprox(), operator== */
173
+ template<class OtherDerived>
174
+ EIGEN_DEVICE_FUNC inline bool operator!=(const QuaternionBase<OtherDerived>& other) const
175
+ { return coeffs() != other.coeffs(); }
176
+
161
177
  /** \returns \c true if \c *this is approximately equal to \a other, within the precision
162
178
  * determined by \a prec.
163
179
  *
@@ -169,20 +185,45 @@ class QuaternionBase : public RotationBase<Derived, 3>
169
185
  /** return the result vector of \a v through the rotation*/
170
186
  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Vector3 _transformVector(const Vector3& v) const;
171
187
 
188
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
172
189
  /** \returns \c *this with scalar type casted to \a NewScalarType
173
190
  *
174
191
  * Note that if \a NewScalarType is equal to the current scalar type of \c *this
175
192
  * then this function smartly returns a const reference to \c *this.
176
193
  */
177
194
  template<typename NewScalarType>
178
- EIGEN_DEVICE_FUNC inline typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type cast() const
195
+ EIGEN_DEVICE_FUNC inline typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type cast() const;
196
+
197
+ #else
198
+
199
+ template<typename NewScalarType>
200
+ EIGEN_DEVICE_FUNC inline
201
+ typename internal::enable_if<internal::is_same<Scalar,NewScalarType>::value,const Derived&>::type cast() const
179
202
  {
180
- return typename internal::cast_return_type<Derived,Quaternion<NewScalarType> >::type(derived());
203
+ return derived();
181
204
  }
182
205
 
206
+ template<typename NewScalarType>
207
+ EIGEN_DEVICE_FUNC inline
208
+ typename internal::enable_if<!internal::is_same<Scalar,NewScalarType>::value,Quaternion<NewScalarType> >::type cast() const
209
+ {
210
+ return Quaternion<NewScalarType>(coeffs().template cast<NewScalarType>());
211
+ }
212
+ #endif
213
+
214
+ #ifndef EIGEN_NO_IO
215
+ friend std::ostream& operator<<(std::ostream& s, const QuaternionBase<Derived>& q) {
216
+ s << q.x() << "i + " << q.y() << "j + " << q.z() << "k" << " + " << q.w();
217
+ return s;
218
+ }
219
+ #endif
220
+
183
221
  #ifdef EIGEN_QUATERNIONBASE_PLUGIN
184
222
  # include EIGEN_QUATERNIONBASE_PLUGIN
185
223
  #endif
224
+ protected:
225
+ EIGEN_DEFAULT_COPY_CONSTRUCTOR(QuaternionBase)
226
+ EIGEN_DEFAULT_EMPTY_CONSTRUCTOR_AND_DESTRUCTOR(QuaternionBase)
186
227
  };
187
228
 
188
229
  /***************************************************************************
@@ -276,6 +317,21 @@ public:
276
317
  EIGEN_DEVICE_FUNC explicit inline Quaternion(const Quaternion<OtherScalar, OtherOptions>& other)
277
318
  { m_coeffs = other.coeffs().template cast<Scalar>(); }
278
319
 
320
+ #if EIGEN_HAS_RVALUE_REFERENCES
321
+ // We define a copy constructor, which means we don't get an implicit move constructor or assignment operator.
322
+ /** Default move constructor */
323
+ EIGEN_DEVICE_FUNC inline Quaternion(Quaternion&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_constructible<Scalar>::value)
324
+ : m_coeffs(std::move(other.coeffs()))
325
+ {}
326
+
327
+ /** Default move assignment operator */
328
+ EIGEN_DEVICE_FUNC Quaternion& operator=(Quaternion&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_assignable<Scalar>::value)
329
+ {
330
+ m_coeffs = std::move(other.coeffs());
331
+ return *this;
332
+ }
333
+ #endif
334
+
279
335
  EIGEN_DEVICE_FUNC static Quaternion UnitRandom();
280
336
 
281
337
  template<typename Derived1, typename Derived2>
@@ -504,8 +560,8 @@ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Derived& QuaternionBase<Derived>::operator
504
560
  template<class Derived>
505
561
  EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Derived& QuaternionBase<Derived>::operator=(const AngleAxisType& aa)
506
562
  {
507
- EIGEN_USING_STD_MATH(cos)
508
- EIGEN_USING_STD_MATH(sin)
563
+ EIGEN_USING_STD(cos)
564
+ EIGEN_USING_STD(sin)
509
565
  Scalar ha = Scalar(0.5)*aa.angle(); // Scalar(0.5) to suppress precision loss warnings
510
566
  this->w() = cos(ha);
511
567
  this->vec() = sin(ha) * aa.axis();
@@ -581,7 +637,7 @@ template<class Derived>
581
637
  template<typename Derived1, typename Derived2>
582
638
  EIGEN_DEVICE_FUNC inline Derived& QuaternionBase<Derived>::setFromTwoVectors(const MatrixBase<Derived1>& a, const MatrixBase<Derived2>& b)
583
639
  {
584
- EIGEN_USING_STD_MATH(sqrt)
640
+ EIGEN_USING_STD(sqrt)
585
641
  Vector3 v0 = a.normalized();
586
642
  Vector3 v1 = b.normalized();
587
643
  Scalar c = v1.dot(v0);
@@ -622,13 +678,13 @@ EIGEN_DEVICE_FUNC inline Derived& QuaternionBase<Derived>::setFromTwoVectors(con
622
678
  template<typename Scalar, int Options>
623
679
  EIGEN_DEVICE_FUNC Quaternion<Scalar,Options> Quaternion<Scalar,Options>::UnitRandom()
624
680
  {
625
- EIGEN_USING_STD_MATH(sqrt)
626
- EIGEN_USING_STD_MATH(sin)
627
- EIGEN_USING_STD_MATH(cos)
681
+ EIGEN_USING_STD(sqrt)
682
+ EIGEN_USING_STD(sin)
683
+ EIGEN_USING_STD(cos)
628
684
  const Scalar u1 = internal::random<Scalar>(0, 1),
629
685
  u2 = internal::random<Scalar>(0, 2*EIGEN_PI),
630
686
  u3 = internal::random<Scalar>(0, 2*EIGEN_PI);
631
- const Scalar a = sqrt(1 - u1),
687
+ const Scalar a = sqrt(Scalar(1) - u1),
632
688
  b = sqrt(u1);
633
689
  return Quaternion (a * sin(u2), a * cos(u2), b * sin(u3), b * cos(u3));
634
690
  }
@@ -707,7 +763,7 @@ template <class OtherDerived>
707
763
  EIGEN_DEVICE_FUNC inline typename internal::traits<Derived>::Scalar
708
764
  QuaternionBase<Derived>::angularDistance(const QuaternionBase<OtherDerived>& other) const
709
765
  {
710
- EIGEN_USING_STD_MATH(atan2)
766
+ EIGEN_USING_STD(atan2)
711
767
  Quaternion<Scalar> d = (*this) * other.conjugate();
712
768
  return Scalar(2) * atan2( d.vec().norm(), numext::abs(d.w()) );
713
769
  }
@@ -725,8 +781,8 @@ template <class OtherDerived>
725
781
  EIGEN_DEVICE_FUNC Quaternion<typename internal::traits<Derived>::Scalar>
726
782
  QuaternionBase<Derived>::slerp(const Scalar& t, const QuaternionBase<OtherDerived>& other) const
727
783
  {
728
- EIGEN_USING_STD_MATH(acos)
729
- EIGEN_USING_STD_MATH(sin)
784
+ EIGEN_USING_STD(acos)
785
+ EIGEN_USING_STD(sin)
730
786
  const Scalar one = Scalar(1) - NumTraits<Scalar>::epsilon();
731
787
  Scalar d = this->dot(other);
732
788
  Scalar absD = numext::abs(d);
@@ -763,7 +819,7 @@ struct quaternionbase_assign_impl<Other,3,3>
763
819
  template<class Derived> EIGEN_DEVICE_FUNC static inline void run(QuaternionBase<Derived>& q, const Other& a_mat)
764
820
  {
765
821
  const typename internal::nested_eval<Other,2>::type mat(a_mat);
766
- EIGEN_USING_STD_MATH(sqrt)
822
+ EIGEN_USING_STD(sqrt)
767
823
  // This algorithm comes from "Quaternion Calculus and Fast Animation",
768
824
  // Ken Shoemake, 1987 SIGGRAPH course notes
769
825
  Scalar t = mat.trace();
@@ -175,7 +175,7 @@ template<typename Scalar>
175
175
  template<typename Derived>
176
176
  EIGEN_DEVICE_FUNC Rotation2D<Scalar>& Rotation2D<Scalar>::fromRotationMatrix(const MatrixBase<Derived>& mat)
177
177
  {
178
- EIGEN_USING_STD_MATH(atan2)
178
+ EIGEN_USING_STD(atan2)
179
179
  EIGEN_STATIC_ASSERT(Derived::RowsAtCompileTime==2 && Derived::ColsAtCompileTime==2,YOU_MADE_A_PROGRAMMING_MISTAKE)
180
180
  m_angle = atan2(mat.coeff(1,0), mat.coeff(0,0));
181
181
  return *this;
@@ -187,8 +187,8 @@ template<typename Scalar>
187
187
  typename Rotation2D<Scalar>::Matrix2
188
188
  EIGEN_DEVICE_FUNC Rotation2D<Scalar>::toRotationMatrix(void) const
189
189
  {
190
- EIGEN_USING_STD_MATH(sin)
191
- EIGEN_USING_STD_MATH(cos)
190
+ EIGEN_USING_STD(sin)
191
+ EIGEN_USING_STD(cos)
192
192
  Scalar sinA = sin(m_angle);
193
193
  Scalar cosA = cos(m_angle);
194
194
  return (Matrix2() << cosA, -sinA, sinA, cosA).finished();
@@ -14,7 +14,7 @@ namespace Eigen {
14
14
 
15
15
  /** \geometry_module \ingroup Geometry_Module
16
16
  *
17
- * \class Scaling
17
+ * \class UniformScaling
18
18
  *
19
19
  * \brief Represents a generic uniform scaling transformation
20
20
  *
@@ -29,6 +29,22 @@ namespace Eigen {
29
29
  *
30
30
  * \sa Scaling(), class DiagonalMatrix, MatrixBase::asDiagonal(), class Translation, class Transform
31
31
  */
32
+
33
+ namespace internal
34
+ {
35
+ // This helper helps nvcc+MSVC to properly parse this file.
36
+ // See bug 1412.
37
+ template <typename Scalar, int Dim, int Mode>
38
+ struct uniformscaling_times_affine_returntype
39
+ {
40
+ enum
41
+ {
42
+ NewMode = int(Mode) == int(Isometry) ? Affine : Mode
43
+ };
44
+ typedef Transform <Scalar, Dim, NewMode> type;
45
+ };
46
+ }
47
+
32
48
  template<typename _Scalar>
33
49
  class UniformScaling
34
50
  {
@@ -60,9 +76,11 @@ public:
60
76
 
61
77
  /** Concatenates a uniform scaling and an affine transformation */
62
78
  template<int Dim, int Mode, int Options>
63
- inline Transform<Scalar,Dim,(int(Mode)==int(Isometry)?Affine:Mode)> operator* (const Transform<Scalar,Dim, Mode, Options>& t) const
79
+ inline typename
80
+ internal::uniformscaling_times_affine_returntype<Scalar,Dim,Mode>::type
81
+ operator* (const Transform<Scalar, Dim, Mode, Options>& t) const
64
82
  {
65
- Transform<Scalar,Dim,(int(Mode)==int(Isometry)?Affine:Mode)> res = t;
83
+ typename internal::uniformscaling_times_affine_returntype<Scalar,Dim,Mode>::type res = t;
66
84
  res.prescale(factor());
67
85
  return res;
68
86
  }
@@ -70,7 +88,7 @@ public:
70
88
  /** Concatenates a uniform scaling and a linear transformation matrix */
71
89
  // TODO returns an expression
72
90
  template<typename Derived>
73
- inline typename internal::plain_matrix_type<Derived>::type operator* (const MatrixBase<Derived>& other) const
91
+ inline typename Eigen::internal::plain_matrix_type<Derived>::type operator* (const MatrixBase<Derived>& other) const
74
92
  { return other * m_factor; }
75
93
 
76
94
  template<typename Derived,int Dim>
@@ -110,7 +128,7 @@ public:
110
128
  /** Concatenates a linear transformation matrix and a uniform scaling
111
129
  * \relates UniformScaling
112
130
  */
113
- // NOTE this operator is defiend in MatrixBase and not as a friend function
131
+ // NOTE this operator is defined in MatrixBase and not as a friend function
114
132
  // of UniformScaling to fix an internal crash of Intel's ICC
115
133
  template<typename Derived,typename Scalar>
116
134
  EIGEN_EXPR_BINARYOP_SCALAR_RETURN_TYPE(Derived,Scalar,product)