tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -24,14 +24,14 @@ struct gebp_kernel;
24
24
  template<typename Scalar, typename Index, typename DataMapper, int nr, int StorageOrder, bool Conjugate = false, bool PanelMode=false>
25
25
  struct gemm_pack_rhs;
26
26
 
27
- template<typename Scalar, typename Index, typename DataMapper, int Pack1, int Pack2, int StorageOrder, bool Conjugate = false, bool PanelMode = false>
27
+ template<typename Scalar, typename Index, typename DataMapper, int Pack1, int Pack2, typename Packet, int StorageOrder, bool Conjugate = false, bool PanelMode = false>
28
28
  struct gemm_pack_lhs;
29
29
 
30
30
  template<
31
31
  typename Index,
32
32
  typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
33
33
  typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
34
- int ResStorageOrder>
34
+ int ResStorageOrder, int ResInnerStride>
35
35
  struct general_matrix_matrix_product;
36
36
 
37
37
  template<typename Index,
@@ -39,90 +39,6 @@ template<typename Index,
39
39
  typename RhsScalar, typename RhsMapper, bool ConjugateRhs, int Version=Specialized>
40
40
  struct general_matrix_vector_product;
41
41
 
42
-
43
- template<bool Conjugate> struct conj_if;
44
-
45
- template<> struct conj_if<true> {
46
- template<typename T>
47
- inline T operator()(const T& x) const { return numext::conj(x); }
48
- template<typename T>
49
- inline T pconj(const T& x) const { return internal::pconj(x); }
50
- };
51
-
52
- template<> struct conj_if<false> {
53
- template<typename T>
54
- inline const T& operator()(const T& x) const { return x; }
55
- template<typename T>
56
- inline const T& pconj(const T& x) const { return x; }
57
- };
58
-
59
- // Generic implementation for custom complex types.
60
- template<typename LhsScalar, typename RhsScalar, bool ConjLhs, bool ConjRhs>
61
- struct conj_helper
62
- {
63
- typedef typename ScalarBinaryOpTraits<LhsScalar,RhsScalar>::ReturnType Scalar;
64
-
65
- EIGEN_STRONG_INLINE Scalar pmadd(const LhsScalar& x, const RhsScalar& y, const Scalar& c) const
66
- { return padd(c, pmul(x,y)); }
67
-
68
- EIGEN_STRONG_INLINE Scalar pmul(const LhsScalar& x, const RhsScalar& y) const
69
- { return conj_if<ConjLhs>()(x) * conj_if<ConjRhs>()(y); }
70
- };
71
-
72
- template<typename Scalar> struct conj_helper<Scalar,Scalar,false,false>
73
- {
74
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Scalar pmadd(const Scalar& x, const Scalar& y, const Scalar& c) const { return internal::pmadd(x,y,c); }
75
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Scalar pmul(const Scalar& x, const Scalar& y) const { return internal::pmul(x,y); }
76
- };
77
-
78
- template<typename RealScalar> struct conj_helper<std::complex<RealScalar>, std::complex<RealScalar>, false,true>
79
- {
80
- typedef std::complex<RealScalar> Scalar;
81
- EIGEN_STRONG_INLINE Scalar pmadd(const Scalar& x, const Scalar& y, const Scalar& c) const
82
- { return c + pmul(x,y); }
83
-
84
- EIGEN_STRONG_INLINE Scalar pmul(const Scalar& x, const Scalar& y) const
85
- { return Scalar(numext::real(x)*numext::real(y) + numext::imag(x)*numext::imag(y), numext::imag(x)*numext::real(y) - numext::real(x)*numext::imag(y)); }
86
- };
87
-
88
- template<typename RealScalar> struct conj_helper<std::complex<RealScalar>, std::complex<RealScalar>, true,false>
89
- {
90
- typedef std::complex<RealScalar> Scalar;
91
- EIGEN_STRONG_INLINE Scalar pmadd(const Scalar& x, const Scalar& y, const Scalar& c) const
92
- { return c + pmul(x,y); }
93
-
94
- EIGEN_STRONG_INLINE Scalar pmul(const Scalar& x, const Scalar& y) const
95
- { return Scalar(numext::real(x)*numext::real(y) + numext::imag(x)*numext::imag(y), numext::real(x)*numext::imag(y) - numext::imag(x)*numext::real(y)); }
96
- };
97
-
98
- template<typename RealScalar> struct conj_helper<std::complex<RealScalar>, std::complex<RealScalar>, true,true>
99
- {
100
- typedef std::complex<RealScalar> Scalar;
101
- EIGEN_STRONG_INLINE Scalar pmadd(const Scalar& x, const Scalar& y, const Scalar& c) const
102
- { return c + pmul(x,y); }
103
-
104
- EIGEN_STRONG_INLINE Scalar pmul(const Scalar& x, const Scalar& y) const
105
- { return Scalar(numext::real(x)*numext::real(y) - numext::imag(x)*numext::imag(y), - numext::real(x)*numext::imag(y) - numext::imag(x)*numext::real(y)); }
106
- };
107
-
108
- template<typename RealScalar,bool Conj> struct conj_helper<std::complex<RealScalar>, RealScalar, Conj,false>
109
- {
110
- typedef std::complex<RealScalar> Scalar;
111
- EIGEN_STRONG_INLINE Scalar pmadd(const Scalar& x, const RealScalar& y, const Scalar& c) const
112
- { return padd(c, pmul(x,y)); }
113
- EIGEN_STRONG_INLINE Scalar pmul(const Scalar& x, const RealScalar& y) const
114
- { return conj_if<Conj>()(x)*y; }
115
- };
116
-
117
- template<typename RealScalar,bool Conj> struct conj_helper<RealScalar, std::complex<RealScalar>, false,Conj>
118
- {
119
- typedef std::complex<RealScalar> Scalar;
120
- EIGEN_STRONG_INLINE Scalar pmadd(const RealScalar& x, const Scalar& y, const Scalar& c) const
121
- { return padd(c, pmul(x,y)); }
122
- EIGEN_STRONG_INLINE Scalar pmul(const RealScalar& x, const Scalar& y) const
123
- { return x*conj_if<Conj>()(y); }
124
- };
125
-
126
42
  template<typename From,typename To> struct get_factor {
127
43
  EIGEN_DEVICE_FUNC static EIGEN_STRONG_INLINE To run(const From& x) { return To(x); }
128
44
  };
@@ -155,13 +71,19 @@ class BlasVectorMapper {
155
71
  Scalar* m_data;
156
72
  };
157
73
 
158
- template<typename Scalar, typename Index, int AlignmentType>
159
- class BlasLinearMapper {
160
- public:
161
- typedef typename packet_traits<Scalar>::type Packet;
162
- typedef typename packet_traits<Scalar>::half HalfPacket;
74
+ template<typename Scalar, typename Index, int AlignmentType, int Incr=1>
75
+ class BlasLinearMapper;
163
76
 
164
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE BlasLinearMapper(Scalar *data) : m_data(data) {}
77
+ template<typename Scalar, typename Index, int AlignmentType>
78
+ class BlasLinearMapper<Scalar,Index,AlignmentType>
79
+ {
80
+ public:
81
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE BlasLinearMapper(Scalar *data, Index incr=1)
82
+ : m_data(data)
83
+ {
84
+ EIGEN_ONLY_USED_FOR_DEBUG(incr);
85
+ eigen_assert(incr==1);
86
+ }
165
87
 
166
88
  EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void prefetch(int i) const {
167
89
  internal::prefetch(&operator()(i));
@@ -171,33 +93,86 @@ class BlasLinearMapper {
171
93
  return m_data[i];
172
94
  }
173
95
 
174
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Packet loadPacket(Index i) const {
175
- return ploadt<Packet, AlignmentType>(m_data + i);
176
- }
177
-
178
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE HalfPacket loadHalfPacket(Index i) const {
179
- return ploadt<HalfPacket, AlignmentType>(m_data + i);
96
+ template<typename PacketType>
97
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketType loadPacket(Index i) const {
98
+ return ploadt<PacketType, AlignmentType>(m_data + i);
180
99
  }
181
100
 
182
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacket(Index i, const Packet &p) const {
183
- pstoret<Scalar, Packet, AlignmentType>(m_data + i, p);
101
+ template<typename PacketType>
102
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacket(Index i, const PacketType &p) const {
103
+ pstoret<Scalar, PacketType, AlignmentType>(m_data + i, p);
184
104
  }
185
105
 
186
- protected:
106
+ protected:
187
107
  Scalar *m_data;
188
108
  };
189
109
 
190
110
  // Lightweight helper class to access matrix coefficients.
191
- template<typename Scalar, typename Index, int StorageOrder, int AlignmentType = Unaligned>
192
- class blas_data_mapper {
193
- public:
194
- typedef typename packet_traits<Scalar>::type Packet;
195
- typedef typename packet_traits<Scalar>::half HalfPacket;
111
+ template<typename Scalar, typename Index, int StorageOrder, int AlignmentType = Unaligned, int Incr = 1>
112
+ class blas_data_mapper;
113
+
114
+ // TMP to help PacketBlock store implementation.
115
+ // There's currently no known use case for PacketBlock load.
116
+ // The default implementation assumes ColMajor order.
117
+ // It always store each packet sequentially one `stride` apart.
118
+ template<typename Index, typename Scalar, typename Packet, int n, int idx, int StorageOrder>
119
+ struct PacketBlockManagement
120
+ {
121
+ PacketBlockManagement<Index, Scalar, Packet, n, idx - 1, StorageOrder> pbm;
122
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(Scalar *to, const Index stride, Index i, Index j, const PacketBlock<Packet, n> &block) const {
123
+ pbm.store(to, stride, i, j, block);
124
+ pstoreu<Scalar>(to + i + (j + idx)*stride, block.packet[idx]);
125
+ }
126
+ };
127
+
128
+ // PacketBlockManagement specialization to take care of RowMajor order without ifs.
129
+ template<typename Index, typename Scalar, typename Packet, int n, int idx>
130
+ struct PacketBlockManagement<Index, Scalar, Packet, n, idx, RowMajor>
131
+ {
132
+ PacketBlockManagement<Index, Scalar, Packet, n, idx - 1, RowMajor> pbm;
133
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(Scalar *to, const Index stride, Index i, Index j, const PacketBlock<Packet, n> &block) const {
134
+ pbm.store(to, stride, i, j, block);
135
+ pstoreu<Scalar>(to + j + (i + idx)*stride, block.packet[idx]);
136
+ }
137
+ };
138
+
139
+ template<typename Index, typename Scalar, typename Packet, int n, int StorageOrder>
140
+ struct PacketBlockManagement<Index, Scalar, Packet, n, -1, StorageOrder>
141
+ {
142
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(Scalar *to, const Index stride, Index i, Index j, const PacketBlock<Packet, n> &block) const {
143
+ EIGEN_UNUSED_VARIABLE(to);
144
+ EIGEN_UNUSED_VARIABLE(stride);
145
+ EIGEN_UNUSED_VARIABLE(i);
146
+ EIGEN_UNUSED_VARIABLE(j);
147
+ EIGEN_UNUSED_VARIABLE(block);
148
+ }
149
+ };
150
+
151
+ template<typename Index, typename Scalar, typename Packet, int n>
152
+ struct PacketBlockManagement<Index, Scalar, Packet, n, -1, RowMajor>
153
+ {
154
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(Scalar *to, const Index stride, Index i, Index j, const PacketBlock<Packet, n> &block) const {
155
+ EIGEN_UNUSED_VARIABLE(to);
156
+ EIGEN_UNUSED_VARIABLE(stride);
157
+ EIGEN_UNUSED_VARIABLE(i);
158
+ EIGEN_UNUSED_VARIABLE(j);
159
+ EIGEN_UNUSED_VARIABLE(block);
160
+ }
161
+ };
196
162
 
163
+ template<typename Scalar, typename Index, int StorageOrder, int AlignmentType>
164
+ class blas_data_mapper<Scalar,Index,StorageOrder,AlignmentType,1>
165
+ {
166
+ public:
197
167
  typedef BlasLinearMapper<Scalar, Index, AlignmentType> LinearMapper;
198
168
  typedef BlasVectorMapper<Scalar, Index> VectorMapper;
199
169
 
200
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE blas_data_mapper(Scalar* data, Index stride) : m_data(data), m_stride(stride) {}
170
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE blas_data_mapper(Scalar* data, Index stride, Index incr=1)
171
+ : m_data(data), m_stride(stride)
172
+ {
173
+ EIGEN_ONLY_USED_FOR_DEBUG(incr);
174
+ eigen_assert(incr==1);
175
+ }
201
176
 
202
177
  EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType>
203
178
  getSubMapper(Index i, Index j) const {
@@ -218,12 +193,14 @@ class blas_data_mapper {
218
193
  return m_data[StorageOrder==RowMajor ? j + i*m_stride : i + j*m_stride];
219
194
  }
220
195
 
221
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Packet loadPacket(Index i, Index j) const {
222
- return ploadt<Packet, AlignmentType>(&operator()(i, j));
196
+ template<typename PacketType>
197
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketType loadPacket(Index i, Index j) const {
198
+ return ploadt<PacketType, AlignmentType>(&operator()(i, j));
223
199
  }
224
200
 
225
- EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE HalfPacket loadHalfPacket(Index i, Index j) const {
226
- return ploadt<HalfPacket, AlignmentType>(&operator()(i, j));
201
+ template <typename PacketT, int AlignmentT>
202
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT load(Index i, Index j) const {
203
+ return ploadt<PacketT, AlignmentT>(&operator()(i, j));
227
204
  }
228
205
 
229
206
  template<typename SubPacket>
@@ -246,11 +223,167 @@ class blas_data_mapper {
246
223
  return internal::first_default_aligned(m_data, size);
247
224
  }
248
225
 
249
- protected:
226
+ template<typename SubPacket, int n>
227
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacketBlock(Index i, Index j, const PacketBlock<SubPacket, n> &block) const {
228
+ PacketBlockManagement<Index, Scalar, SubPacket, n, n-1, StorageOrder> pbm;
229
+ pbm.store(m_data, m_stride, i, j, block);
230
+ }
231
+ protected:
250
232
  Scalar* EIGEN_RESTRICT m_data;
251
233
  const Index m_stride;
252
234
  };
253
235
 
236
+ // Implementation of non-natural increment (i.e. inner-stride != 1)
237
+ // The exposed API is not complete yet compared to the Incr==1 case
238
+ // because some features makes less sense in this case.
239
+ template<typename Scalar, typename Index, int AlignmentType, int Incr>
240
+ class BlasLinearMapper
241
+ {
242
+ public:
243
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE BlasLinearMapper(Scalar *data,Index incr) : m_data(data), m_incr(incr) {}
244
+
245
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void prefetch(int i) const {
246
+ internal::prefetch(&operator()(i));
247
+ }
248
+
249
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE Scalar& operator()(Index i) const {
250
+ return m_data[i*m_incr.value()];
251
+ }
252
+
253
+ template<typename PacketType>
254
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketType loadPacket(Index i) const {
255
+ return pgather<Scalar,PacketType>(m_data + i*m_incr.value(), m_incr.value());
256
+ }
257
+
258
+ template<typename PacketType>
259
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacket(Index i, const PacketType &p) const {
260
+ pscatter<Scalar, PacketType>(m_data + i*m_incr.value(), p, m_incr.value());
261
+ }
262
+
263
+ protected:
264
+ Scalar *m_data;
265
+ const internal::variable_if_dynamic<Index,Incr> m_incr;
266
+ };
267
+
268
+ template<typename Scalar, typename Index, int StorageOrder, int AlignmentType,int Incr>
269
+ class blas_data_mapper
270
+ {
271
+ public:
272
+ typedef BlasLinearMapper<Scalar, Index, AlignmentType,Incr> LinearMapper;
273
+
274
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE blas_data_mapper(Scalar* data, Index stride, Index incr) : m_data(data), m_stride(stride), m_incr(incr) {}
275
+
276
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE blas_data_mapper
277
+ getSubMapper(Index i, Index j) const {
278
+ return blas_data_mapper(&operator()(i, j), m_stride, m_incr.value());
279
+ }
280
+
281
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE LinearMapper getLinearMapper(Index i, Index j) const {
282
+ return LinearMapper(&operator()(i, j), m_incr.value());
283
+ }
284
+
285
+ EIGEN_DEVICE_FUNC
286
+ EIGEN_ALWAYS_INLINE Scalar& operator()(Index i, Index j) const {
287
+ return m_data[StorageOrder==RowMajor ? j*m_incr.value() + i*m_stride : i*m_incr.value() + j*m_stride];
288
+ }
289
+
290
+ template<typename PacketType>
291
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketType loadPacket(Index i, Index j) const {
292
+ return pgather<Scalar,PacketType>(&operator()(i, j),m_incr.value());
293
+ }
294
+
295
+ template <typename PacketT, int AlignmentT>
296
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE PacketT load(Index i, Index j) const {
297
+ return pgather<Scalar,PacketT>(&operator()(i, j),m_incr.value());
298
+ }
299
+
300
+ template<typename SubPacket>
301
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void scatterPacket(Index i, Index j, const SubPacket &p) const {
302
+ pscatter<Scalar, SubPacket>(&operator()(i, j), p, m_stride);
303
+ }
304
+
305
+ template<typename SubPacket>
306
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE SubPacket gatherPacket(Index i, Index j) const {
307
+ return pgather<Scalar, SubPacket>(&operator()(i, j), m_stride);
308
+ }
309
+
310
+ // storePacketBlock_helper defines a way to access values inside the PacketBlock, this is essentially required by the Complex types.
311
+ template<typename SubPacket, typename ScalarT, int n, int idx>
312
+ struct storePacketBlock_helper
313
+ {
314
+ storePacketBlock_helper<SubPacket, ScalarT, n, idx-1> spbh;
315
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>* sup, Index i, Index j, const PacketBlock<SubPacket, n>& block) const {
316
+ spbh.store(sup, i,j,block);
317
+ for(int l = 0; l < unpacket_traits<SubPacket>::size; l++)
318
+ {
319
+ ScalarT *v = &sup->operator()(i+l, j+idx);
320
+ *v = block.packet[idx][l];
321
+ }
322
+ }
323
+ };
324
+
325
+ template<typename SubPacket, int n, int idx>
326
+ struct storePacketBlock_helper<SubPacket, std::complex<float>, n, idx>
327
+ {
328
+ storePacketBlock_helper<SubPacket, std::complex<float>, n, idx-1> spbh;
329
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>* sup, Index i, Index j, const PacketBlock<SubPacket, n>& block) const {
330
+ spbh.store(sup,i,j,block);
331
+ for(int l = 0; l < unpacket_traits<SubPacket>::size; l++)
332
+ {
333
+ std::complex<float> *v = &sup->operator()(i+l, j+idx);
334
+ v->real(block.packet[idx].v[2*l+0]);
335
+ v->imag(block.packet[idx].v[2*l+1]);
336
+ }
337
+ }
338
+ };
339
+
340
+ template<typename SubPacket, int n, int idx>
341
+ struct storePacketBlock_helper<SubPacket, std::complex<double>, n, idx>
342
+ {
343
+ storePacketBlock_helper<SubPacket, std::complex<double>, n, idx-1> spbh;
344
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>* sup, Index i, Index j, const PacketBlock<SubPacket, n>& block) const {
345
+ spbh.store(sup,i,j,block);
346
+ for(int l = 0; l < unpacket_traits<SubPacket>::size; l++)
347
+ {
348
+ std::complex<double> *v = &sup->operator()(i+l, j+idx);
349
+ v->real(block.packet[idx].v[2*l+0]);
350
+ v->imag(block.packet[idx].v[2*l+1]);
351
+ }
352
+ }
353
+ };
354
+
355
+ template<typename SubPacket, typename ScalarT, int n>
356
+ struct storePacketBlock_helper<SubPacket, ScalarT, n, -1>
357
+ {
358
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>*, Index, Index, const PacketBlock<SubPacket, n>& ) const {
359
+ }
360
+ };
361
+
362
+ template<typename SubPacket, int n>
363
+ struct storePacketBlock_helper<SubPacket, std::complex<float>, n, -1>
364
+ {
365
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>*, Index, Index, const PacketBlock<SubPacket, n>& ) const {
366
+ }
367
+ };
368
+
369
+ template<typename SubPacket, int n>
370
+ struct storePacketBlock_helper<SubPacket, std::complex<double>, n, -1>
371
+ {
372
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void store(const blas_data_mapper<Scalar, Index, StorageOrder, AlignmentType, Incr>*, Index, Index, const PacketBlock<SubPacket, n>& ) const {
373
+ }
374
+ };
375
+ // This function stores a PacketBlock on m_data, this approach is really quite slow compare to Incr=1 and should be avoided when possible.
376
+ template<typename SubPacket, int n>
377
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE void storePacketBlock(Index i, Index j, const PacketBlock<SubPacket, n>&block) const {
378
+ storePacketBlock_helper<SubPacket, Scalar, n, n-1> spb;
379
+ spb.store(this, i,j,block);
380
+ }
381
+ protected:
382
+ Scalar* EIGEN_RESTRICT m_data;
383
+ const Index m_stride;
384
+ const internal::variable_if_dynamic<Index,Incr> m_incr;
385
+ };
386
+
254
387
  // lightweight helper class to access matrix coefficients (const version)
255
388
  template<typename Scalar, typename Index, int StorageOrder>
256
389
  class const_blas_data_mapper : public blas_data_mapper<const Scalar, Index, StorageOrder> {
@@ -278,14 +411,15 @@ template<typename XprType> struct blas_traits
278
411
  HasUsableDirectAccess = ( (int(XprType::Flags)&DirectAccessBit)
279
412
  && ( bool(XprType::IsVectorAtCompileTime)
280
413
  || int(inner_stride_at_compile_time<XprType>::ret) == 1)
281
- ) ? 1 : 0
414
+ ) ? 1 : 0,
415
+ HasScalarFactor = false
282
416
  };
283
417
  typedef typename conditional<bool(HasUsableDirectAccess),
284
418
  ExtractType,
285
419
  typename _ExtractType::PlainObject
286
420
  >::type DirectLinearAccessType;
287
- static inline ExtractType extract(const XprType& x) { return x; }
288
- static inline const Scalar extractScalarFactor(const XprType&) { return Scalar(1); }
421
+ static inline EIGEN_DEVICE_FUNC ExtractType extract(const XprType& x) { return x; }
422
+ static inline EIGEN_DEVICE_FUNC const Scalar extractScalarFactor(const XprType&) { return Scalar(1); }
289
423
  };
290
424
 
291
425
  // pop conjugate
@@ -310,17 +444,23 @@ template<typename Scalar, typename NestedXpr, typename Plain>
310
444
  struct blas_traits<CwiseBinaryOp<scalar_product_op<Scalar>, const CwiseNullaryOp<scalar_constant_op<Scalar>,Plain>, NestedXpr> >
311
445
  : blas_traits<NestedXpr>
312
446
  {
447
+ enum {
448
+ HasScalarFactor = true
449
+ };
313
450
  typedef blas_traits<NestedXpr> Base;
314
451
  typedef CwiseBinaryOp<scalar_product_op<Scalar>, const CwiseNullaryOp<scalar_constant_op<Scalar>,Plain>, NestedXpr> XprType;
315
452
  typedef typename Base::ExtractType ExtractType;
316
- static inline ExtractType extract(const XprType& x) { return Base::extract(x.rhs()); }
317
- static inline Scalar extractScalarFactor(const XprType& x)
453
+ static inline EIGEN_DEVICE_FUNC ExtractType extract(const XprType& x) { return Base::extract(x.rhs()); }
454
+ static inline EIGEN_DEVICE_FUNC Scalar extractScalarFactor(const XprType& x)
318
455
  { return x.lhs().functor().m_other * Base::extractScalarFactor(x.rhs()); }
319
456
  };
320
457
  template<typename Scalar, typename NestedXpr, typename Plain>
321
458
  struct blas_traits<CwiseBinaryOp<scalar_product_op<Scalar>, NestedXpr, const CwiseNullaryOp<scalar_constant_op<Scalar>,Plain> > >
322
459
  : blas_traits<NestedXpr>
323
460
  {
461
+ enum {
462
+ HasScalarFactor = true
463
+ };
324
464
  typedef blas_traits<NestedXpr> Base;
325
465
  typedef CwiseBinaryOp<scalar_product_op<Scalar>, NestedXpr, const CwiseNullaryOp<scalar_constant_op<Scalar>,Plain> > XprType;
326
466
  typedef typename Base::ExtractType ExtractType;
@@ -339,6 +479,9 @@ template<typename Scalar, typename NestedXpr>
339
479
  struct blas_traits<CwiseUnaryOp<scalar_opposite_op<Scalar>, NestedXpr> >
340
480
  : blas_traits<NestedXpr>
341
481
  {
482
+ enum {
483
+ HasScalarFactor = true
484
+ };
342
485
  typedef blas_traits<NestedXpr> Base;
343
486
  typedef CwiseUnaryOp<scalar_opposite_op<Scalar>, NestedXpr> XprType;
344
487
  typedef typename Base::ExtractType ExtractType;
@@ -375,7 +518,7 @@ struct blas_traits<const T>
375
518
 
376
519
  template<typename T, bool HasUsableDirectAccess=blas_traits<T>::HasUsableDirectAccess>
377
520
  struct extract_data_selector {
378
- static const typename T::Scalar* run(const T& m)
521
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE static const typename T::Scalar* run(const T& m)
379
522
  {
380
523
  return blas_traits<T>::extract(m).data();
381
524
  }
@@ -386,11 +529,53 @@ struct extract_data_selector<T,false> {
386
529
  static typename T::Scalar* run(const T&) { return 0; }
387
530
  };
388
531
 
389
- template<typename T> const typename T::Scalar* extract_data(const T& m)
532
+ template<typename T>
533
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE const typename T::Scalar* extract_data(const T& m)
390
534
  {
391
535
  return extract_data_selector<T>::run(m);
392
536
  }
393
537
 
538
+ /**
539
+ * \c combine_scalar_factors extracts and multiplies factors from GEMM and GEMV products.
540
+ * There is a specialization for booleans
541
+ */
542
+ template<typename ResScalar, typename Lhs, typename Rhs>
543
+ struct combine_scalar_factors_impl
544
+ {
545
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE static ResScalar run(const Lhs& lhs, const Rhs& rhs)
546
+ {
547
+ return blas_traits<Lhs>::extractScalarFactor(lhs) * blas_traits<Rhs>::extractScalarFactor(rhs);
548
+ }
549
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE static ResScalar run(const ResScalar& alpha, const Lhs& lhs, const Rhs& rhs)
550
+ {
551
+ return alpha * blas_traits<Lhs>::extractScalarFactor(lhs) * blas_traits<Rhs>::extractScalarFactor(rhs);
552
+ }
553
+ };
554
+ template<typename Lhs, typename Rhs>
555
+ struct combine_scalar_factors_impl<bool, Lhs, Rhs>
556
+ {
557
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE static bool run(const Lhs& lhs, const Rhs& rhs)
558
+ {
559
+ return blas_traits<Lhs>::extractScalarFactor(lhs) && blas_traits<Rhs>::extractScalarFactor(rhs);
560
+ }
561
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE static bool run(const bool& alpha, const Lhs& lhs, const Rhs& rhs)
562
+ {
563
+ return alpha && blas_traits<Lhs>::extractScalarFactor(lhs) && blas_traits<Rhs>::extractScalarFactor(rhs);
564
+ }
565
+ };
566
+
567
+ template<typename ResScalar, typename Lhs, typename Rhs>
568
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE ResScalar combine_scalar_factors(const ResScalar& alpha, const Lhs& lhs, const Rhs& rhs)
569
+ {
570
+ return combine_scalar_factors_impl<ResScalar,Lhs,Rhs>::run(alpha, lhs, rhs);
571
+ }
572
+ template<typename ResScalar, typename Lhs, typename Rhs>
573
+ EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE ResScalar combine_scalar_factors(const Lhs& lhs, const Rhs& rhs)
574
+ {
575
+ return combine_scalar_factors_impl<ResScalar,Lhs,Rhs>::run(lhs, rhs);
576
+ }
577
+
578
+
394
579
  } // end namespace internal
395
580
 
396
581
  } // end namespace Eigen