tomoto 0.2.2 → 0.3.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -20,8 +20,9 @@ template<typename _LhsScalar, typename _RhsScalar> class level3_blocking;
|
|
20
20
|
template<
|
21
21
|
typename Index,
|
22
22
|
typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
|
23
|
-
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs
|
24
|
-
|
23
|
+
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
24
|
+
int ResInnerStride>
|
25
|
+
struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,ResInnerStride>
|
25
26
|
{
|
26
27
|
typedef gebp_traits<RhsScalar,LhsScalar> Traits;
|
27
28
|
|
@@ -30,7 +31,7 @@ struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLh
|
|
30
31
|
Index rows, Index cols, Index depth,
|
31
32
|
const LhsScalar* lhs, Index lhsStride,
|
32
33
|
const RhsScalar* rhs, Index rhsStride,
|
33
|
-
ResScalar* res, Index resStride,
|
34
|
+
ResScalar* res, Index resIncr, Index resStride,
|
34
35
|
ResScalar alpha,
|
35
36
|
level3_blocking<RhsScalar,LhsScalar>& blocking,
|
36
37
|
GemmParallelInfo<Index>* info = 0)
|
@@ -39,8 +40,8 @@ struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLh
|
|
39
40
|
general_matrix_matrix_product<Index,
|
40
41
|
RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
|
41
42
|
LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
|
42
|
-
ColMajor>
|
43
|
-
::run(cols,rows,depth,rhs,rhsStride,lhs,lhsStride,res,resStride,alpha,blocking,info);
|
43
|
+
ColMajor,ResInnerStride>
|
44
|
+
::run(cols,rows,depth,rhs,rhsStride,lhs,lhsStride,res,resIncr,resStride,alpha,blocking,info);
|
44
45
|
}
|
45
46
|
};
|
46
47
|
|
@@ -49,8 +50,9 @@ struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLh
|
|
49
50
|
template<
|
50
51
|
typename Index,
|
51
52
|
typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
|
52
|
-
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs
|
53
|
-
|
53
|
+
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
54
|
+
int ResInnerStride>
|
55
|
+
struct general_matrix_matrix_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,ResInnerStride>
|
54
56
|
{
|
55
57
|
|
56
58
|
typedef gebp_traits<LhsScalar,RhsScalar> Traits;
|
@@ -59,23 +61,23 @@ typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScala
|
|
59
61
|
static void run(Index rows, Index cols, Index depth,
|
60
62
|
const LhsScalar* _lhs, Index lhsStride,
|
61
63
|
const RhsScalar* _rhs, Index rhsStride,
|
62
|
-
ResScalar* _res, Index resStride,
|
64
|
+
ResScalar* _res, Index resIncr, Index resStride,
|
63
65
|
ResScalar alpha,
|
64
66
|
level3_blocking<LhsScalar,RhsScalar>& blocking,
|
65
67
|
GemmParallelInfo<Index>* info = 0)
|
66
68
|
{
|
67
69
|
typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
|
68
70
|
typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
|
69
|
-
typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor> ResMapper;
|
70
|
-
LhsMapper lhs(_lhs,lhsStride);
|
71
|
-
RhsMapper rhs(_rhs,rhsStride);
|
72
|
-
ResMapper res(_res, resStride);
|
71
|
+
typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor,Unaligned,ResInnerStride> ResMapper;
|
72
|
+
LhsMapper lhs(_lhs, lhsStride);
|
73
|
+
RhsMapper rhs(_rhs, rhsStride);
|
74
|
+
ResMapper res(_res, resStride, resIncr);
|
73
75
|
|
74
76
|
Index kc = blocking.kc(); // cache block size along the K direction
|
75
77
|
Index mc = (std::min)(rows,blocking.mc()); // cache block size along the M direction
|
76
78
|
Index nc = (std::min)(cols,blocking.nc()); // cache block size along the N direction
|
77
79
|
|
78
|
-
gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
|
80
|
+
gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder> pack_lhs;
|
79
81
|
gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
|
80
82
|
gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
|
81
83
|
|
@@ -108,7 +110,7 @@ static void run(Index rows, Index cols, Index depth,
|
|
108
110
|
// i.e., we test that info[tid].users equals 0.
|
109
111
|
// Then, we set info[tid].users to the number of threads to mark that all other threads are going to use it.
|
110
112
|
while(info[tid].users!=0) {}
|
111
|
-
info[tid].users
|
113
|
+
info[tid].users = threads;
|
112
114
|
|
113
115
|
pack_lhs(blockA+info[tid].lhs_start*actual_kc, lhs.getSubMapper(info[tid].lhs_start,k), actual_kc, info[tid].lhs_length);
|
114
116
|
|
@@ -146,7 +148,9 @@ static void run(Index rows, Index cols, Index depth,
|
|
146
148
|
// Release all the sub blocks A'_i of A' for the current thread,
|
147
149
|
// i.e., we simply decrement the number of users by 1
|
148
150
|
for(Index i=0; i<threads; ++i)
|
151
|
+
#if !EIGEN_HAS_CXX11_ATOMIC
|
149
152
|
#pragma omp atomic
|
153
|
+
#endif
|
150
154
|
info[i].users -= 1;
|
151
155
|
}
|
152
156
|
}
|
@@ -226,7 +230,7 @@ struct gemm_functor
|
|
226
230
|
Gemm::run(rows, cols, m_lhs.cols(),
|
227
231
|
&m_lhs.coeffRef(row,0), m_lhs.outerStride(),
|
228
232
|
&m_rhs.coeffRef(0,col), m_rhs.outerStride(),
|
229
|
-
(Scalar*)&(m_dest.coeffRef(row,col)), m_dest.outerStride(),
|
233
|
+
(Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(),
|
230
234
|
m_actualAlpha, m_blocking, info);
|
231
235
|
}
|
232
236
|
|
@@ -427,8 +431,14 @@ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
|
427
431
|
template<typename Dst>
|
428
432
|
static void evalTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
429
433
|
{
|
430
|
-
|
431
|
-
|
434
|
+
// See http://eigen.tuxfamily.org/bz/show_bug.cgi?id=404 for a discussion and helper program
|
435
|
+
// to determine the following heuristic.
|
436
|
+
// EIGEN_GEMM_TO_COEFFBASED_THRESHOLD is typically defined to 20 in GeneralProduct.h,
|
437
|
+
// unless it has been specialized by the user or for a given architecture.
|
438
|
+
// Note that the condition rhs.rows()>0 was required because lazy product is (was?) not happy with empty inputs.
|
439
|
+
// I'm not sure it is still required.
|
440
|
+
if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
|
441
|
+
lazyproduct::eval_dynamic(dst, lhs, rhs, internal::assign_op<typename Dst::Scalar,Scalar>());
|
432
442
|
else
|
433
443
|
{
|
434
444
|
dst.setZero();
|
@@ -439,8 +449,8 @@ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
|
439
449
|
template<typename Dst>
|
440
450
|
static void addTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
441
451
|
{
|
442
|
-
if((rhs.rows()+dst.rows()+dst.cols())<
|
443
|
-
lazyproduct::
|
452
|
+
if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
|
453
|
+
lazyproduct::eval_dynamic(dst, lhs, rhs, internal::add_assign_op<typename Dst::Scalar,Scalar>());
|
444
454
|
else
|
445
455
|
scaleAndAddTo(dst,lhs, rhs, Scalar(1));
|
446
456
|
}
|
@@ -448,8 +458,8 @@ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
|
448
458
|
template<typename Dst>
|
449
459
|
static void subTo(Dst& dst, const Lhs& lhs, const Rhs& rhs)
|
450
460
|
{
|
451
|
-
if((rhs.rows()+dst.rows()+dst.cols())<
|
452
|
-
lazyproduct::
|
461
|
+
if((rhs.rows()+dst.rows()+dst.cols())<EIGEN_GEMM_TO_COEFFBASED_THRESHOLD && rhs.rows()>0)
|
462
|
+
lazyproduct::eval_dynamic(dst, lhs, rhs, internal::sub_assign_op<typename Dst::Scalar,Scalar>());
|
453
463
|
else
|
454
464
|
scaleAndAddTo(dst, lhs, rhs, Scalar(-1));
|
455
465
|
}
|
@@ -461,11 +471,25 @@ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
|
461
471
|
if(a_lhs.cols()==0 || a_lhs.rows()==0 || a_rhs.cols()==0)
|
462
472
|
return;
|
463
473
|
|
474
|
+
if (dst.cols() == 1)
|
475
|
+
{
|
476
|
+
// Fallback to GEMV if either the lhs or rhs is a runtime vector
|
477
|
+
typename Dest::ColXpr dst_vec(dst.col(0));
|
478
|
+
return internal::generic_product_impl<Lhs,typename Rhs::ConstColXpr,DenseShape,DenseShape,GemvProduct>
|
479
|
+
::scaleAndAddTo(dst_vec, a_lhs, a_rhs.col(0), alpha);
|
480
|
+
}
|
481
|
+
else if (dst.rows() == 1)
|
482
|
+
{
|
483
|
+
// Fallback to GEMV if either the lhs or rhs is a runtime vector
|
484
|
+
typename Dest::RowXpr dst_vec(dst.row(0));
|
485
|
+
return internal::generic_product_impl<typename Lhs::ConstRowXpr,Rhs,DenseShape,DenseShape,GemvProduct>
|
486
|
+
::scaleAndAddTo(dst_vec, a_lhs.row(0), a_rhs, alpha);
|
487
|
+
}
|
488
|
+
|
464
489
|
typename internal::add_const_on_value_type<ActualLhsType>::type lhs = LhsBlasTraits::extract(a_lhs);
|
465
490
|
typename internal::add_const_on_value_type<ActualRhsType>::type rhs = RhsBlasTraits::extract(a_rhs);
|
466
491
|
|
467
|
-
Scalar actualAlpha = alpha
|
468
|
-
* RhsBlasTraits::extractScalarFactor(a_rhs);
|
492
|
+
Scalar actualAlpha = combine_scalar_factors(alpha, a_lhs, a_rhs);
|
469
493
|
|
470
494
|
typedef internal::gemm_blocking_space<(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,LhsScalar,RhsScalar,
|
471
495
|
Dest::MaxRowsAtCompileTime,Dest::MaxColsAtCompileTime,MaxDepthAtCompileTime> BlockingType;
|
@@ -476,7 +500,8 @@ struct generic_product_impl<Lhs,Rhs,DenseShape,DenseShape,GemmProduct>
|
|
476
500
|
Index,
|
477
501
|
LhsScalar, (ActualLhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(LhsBlasTraits::NeedToConjugate),
|
478
502
|
RhsScalar, (ActualRhsTypeCleaned::Flags&RowMajorBit) ? RowMajor : ColMajor, bool(RhsBlasTraits::NeedToConjugate),
|
479
|
-
(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor
|
503
|
+
(Dest::Flags&RowMajorBit) ? RowMajor : ColMajor,
|
504
|
+
Dest::InnerStrideAtCompileTime>,
|
480
505
|
ActualLhsTypeCleaned, ActualRhsTypeCleaned, Dest, BlockingType> GemmFunctor;
|
481
506
|
|
482
507
|
BlockingType blocking(dst.rows(), dst.cols(), lhs.cols(), 1, true);
|
@@ -25,51 +25,54 @@ namespace internal {
|
|
25
25
|
**********************************************************************/
|
26
26
|
|
27
27
|
// forward declarations (defined at the end of this file)
|
28
|
-
template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
|
28
|
+
template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int ResInnerStride, int UpLo>
|
29
29
|
struct tribb_kernel;
|
30
30
|
|
31
31
|
/* Optimized matrix-matrix product evaluating only one triangular half */
|
32
32
|
template <typename Index,
|
33
33
|
typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
|
34
34
|
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
35
|
-
int ResStorageOrder, int UpLo, int Version = Specialized>
|
35
|
+
int ResStorageOrder, int ResInnerStride, int UpLo, int Version = Specialized>
|
36
36
|
struct general_matrix_matrix_triangular_product;
|
37
37
|
|
38
38
|
// as usual if the result is row major => we transpose the product
|
39
39
|
template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
|
40
|
-
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
41
|
-
|
40
|
+
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
41
|
+
int ResInnerStride, int UpLo, int Version>
|
42
|
+
struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,ResInnerStride,UpLo,Version>
|
42
43
|
{
|
43
44
|
typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
|
44
45
|
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* lhs, Index lhsStride,
|
45
|
-
const RhsScalar* rhs, Index rhsStride, ResScalar* res, Index resStride,
|
46
|
+
const RhsScalar* rhs, Index rhsStride, ResScalar* res, Index resIncr, Index resStride,
|
46
47
|
const ResScalar& alpha, level3_blocking<RhsScalar,LhsScalar>& blocking)
|
47
48
|
{
|
48
49
|
general_matrix_matrix_triangular_product<Index,
|
49
50
|
RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
|
50
51
|
LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
|
51
|
-
ColMajor, UpLo==Lower?Upper:Lower>
|
52
|
-
::run(size,depth,rhs,rhsStride,lhs,lhsStride,res,resStride,alpha,blocking);
|
52
|
+
ColMajor, ResInnerStride, UpLo==Lower?Upper:Lower>
|
53
|
+
::run(size,depth,rhs,rhsStride,lhs,lhsStride,res,resIncr,resStride,alpha,blocking);
|
53
54
|
}
|
54
55
|
};
|
55
56
|
|
56
57
|
template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
|
57
|
-
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
58
|
-
|
58
|
+
typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
|
59
|
+
int ResInnerStride, int UpLo, int Version>
|
60
|
+
struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,ResInnerStride,UpLo,Version>
|
59
61
|
{
|
60
62
|
typedef typename ScalarBinaryOpTraits<LhsScalar, RhsScalar>::ReturnType ResScalar;
|
61
63
|
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* _lhs, Index lhsStride,
|
62
|
-
const RhsScalar* _rhs, Index rhsStride,
|
64
|
+
const RhsScalar* _rhs, Index rhsStride,
|
65
|
+
ResScalar* _res, Index resIncr, Index resStride,
|
63
66
|
const ResScalar& alpha, level3_blocking<LhsScalar,RhsScalar>& blocking)
|
64
67
|
{
|
65
68
|
typedef gebp_traits<LhsScalar,RhsScalar> Traits;
|
66
69
|
|
67
70
|
typedef const_blas_data_mapper<LhsScalar, Index, LhsStorageOrder> LhsMapper;
|
68
71
|
typedef const_blas_data_mapper<RhsScalar, Index, RhsStorageOrder> RhsMapper;
|
69
|
-
typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor> ResMapper;
|
72
|
+
typedef blas_data_mapper<typename Traits::ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
|
70
73
|
LhsMapper lhs(_lhs,lhsStride);
|
71
74
|
RhsMapper rhs(_rhs,rhsStride);
|
72
|
-
ResMapper res(_res, resStride);
|
75
|
+
ResMapper res(_res, resStride, resIncr);
|
73
76
|
|
74
77
|
Index kc = blocking.kc();
|
75
78
|
Index mc = (std::min)(size,blocking.mc());
|
@@ -84,10 +87,10 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
|
|
84
87
|
ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
|
85
88
|
ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
|
86
89
|
|
87
|
-
gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, LhsStorageOrder> pack_lhs;
|
90
|
+
gemm_pack_lhs<LhsScalar, Index, LhsMapper, Traits::mr, Traits::LhsProgress, typename Traits::LhsPacket4Packing, LhsStorageOrder> pack_lhs;
|
88
91
|
gemm_pack_rhs<RhsScalar, Index, RhsMapper, Traits::nr, RhsStorageOrder> pack_rhs;
|
89
92
|
gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp;
|
90
|
-
tribb_kernel<LhsScalar, RhsScalar, Index, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs, UpLo> sybb;
|
93
|
+
tribb_kernel<LhsScalar, RhsScalar, Index, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs, ResInnerStride, UpLo> sybb;
|
91
94
|
|
92
95
|
for(Index k2=0; k2<depth; k2+=kc)
|
93
96
|
{
|
@@ -110,8 +113,7 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
|
|
110
113
|
gebp(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc,
|
111
114
|
(std::min)(size,i2), alpha, -1, -1, 0, 0);
|
112
115
|
|
113
|
-
|
114
|
-
sybb(_res+resStride*i2 + i2, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha);
|
116
|
+
sybb(_res+resStride*i2 + resIncr*i2, resIncr, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha);
|
115
117
|
|
116
118
|
if (UpLo==Upper)
|
117
119
|
{
|
@@ -133,7 +135,7 @@ struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,
|
|
133
135
|
// while the triangular block overlapping the diagonal is evaluated into a
|
134
136
|
// small temporary buffer which is then accumulated into the result using a
|
135
137
|
// triangular traversal.
|
136
|
-
template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
|
138
|
+
template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int ResInnerStride, int UpLo>
|
137
139
|
struct tribb_kernel
|
138
140
|
{
|
139
141
|
typedef gebp_traits<LhsScalar,RhsScalar,ConjLhs,ConjRhs> Traits;
|
@@ -142,11 +144,13 @@ struct tribb_kernel
|
|
142
144
|
enum {
|
143
145
|
BlockSize = meta_least_common_multiple<EIGEN_PLAIN_ENUM_MAX(mr,nr),EIGEN_PLAIN_ENUM_MIN(mr,nr)>::ret
|
144
146
|
};
|
145
|
-
void operator()(ResScalar* _res, Index resStride, const LhsScalar* blockA, const RhsScalar* blockB, Index size, Index depth, const ResScalar& alpha)
|
147
|
+
void operator()(ResScalar* _res, Index resIncr, Index resStride, const LhsScalar* blockA, const RhsScalar* blockB, Index size, Index depth, const ResScalar& alpha)
|
146
148
|
{
|
147
|
-
typedef blas_data_mapper<ResScalar, Index, ColMajor> ResMapper;
|
148
|
-
|
149
|
-
|
149
|
+
typedef blas_data_mapper<ResScalar, Index, ColMajor, Unaligned, ResInnerStride> ResMapper;
|
150
|
+
typedef blas_data_mapper<ResScalar, Index, ColMajor, Unaligned> BufferMapper;
|
151
|
+
ResMapper res(_res, resStride, resIncr);
|
152
|
+
gebp_kernel<LhsScalar, RhsScalar, Index, ResMapper, mr, nr, ConjLhs, ConjRhs> gebp_kernel1;
|
153
|
+
gebp_kernel<LhsScalar, RhsScalar, Index, BufferMapper, mr, nr, ConjLhs, ConjRhs> gebp_kernel2;
|
150
154
|
|
151
155
|
Matrix<ResScalar,BlockSize,BlockSize,ColMajor> buffer((internal::constructor_without_unaligned_array_assert()));
|
152
156
|
|
@@ -158,31 +162,32 @@ struct tribb_kernel
|
|
158
162
|
const RhsScalar* actual_b = blockB+j*depth;
|
159
163
|
|
160
164
|
if(UpLo==Upper)
|
161
|
-
|
162
|
-
|
163
|
-
|
165
|
+
gebp_kernel1(res.getSubMapper(0, j), blockA, actual_b, j, depth, actualBlockSize, alpha,
|
166
|
+
-1, -1, 0, 0);
|
167
|
+
|
164
168
|
// selfadjoint micro block
|
165
169
|
{
|
166
170
|
Index i = j;
|
167
171
|
buffer.setZero();
|
168
172
|
// 1 - apply the kernel on the temporary buffer
|
169
|
-
|
170
|
-
|
173
|
+
gebp_kernel2(BufferMapper(buffer.data(), BlockSize), blockA+depth*i, actual_b, actualBlockSize, depth, actualBlockSize, alpha,
|
174
|
+
-1, -1, 0, 0);
|
175
|
+
|
171
176
|
// 2 - triangular accumulation
|
172
177
|
for(Index j1=0; j1<actualBlockSize; ++j1)
|
173
178
|
{
|
174
|
-
|
179
|
+
typename ResMapper::LinearMapper r = res.getLinearMapper(i,j+j1);
|
175
180
|
for(Index i1=UpLo==Lower ? j1 : 0;
|
176
181
|
UpLo==Lower ? i1<actualBlockSize : i1<=j1; ++i1)
|
177
|
-
r
|
182
|
+
r(i1) += buffer(i1,j1);
|
178
183
|
}
|
179
184
|
}
|
180
185
|
|
181
186
|
if(UpLo==Lower)
|
182
187
|
{
|
183
188
|
Index i = j+actualBlockSize;
|
184
|
-
|
185
|
-
|
189
|
+
gebp_kernel1(res.getSubMapper(i, j), blockA+depth*i, actual_b, size-i,
|
190
|
+
depth, actualBlockSize, alpha, -1, -1, 0, 0);
|
186
191
|
}
|
187
192
|
}
|
188
193
|
}
|
@@ -286,23 +291,24 @@ struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,false>
|
|
286
291
|
internal::general_matrix_matrix_triangular_product<Index,
|
287
292
|
typename Lhs::Scalar, LhsIsRowMajor ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
|
288
293
|
typename Rhs::Scalar, RhsIsRowMajor ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
|
289
|
-
IsRowMajor ? RowMajor : ColMajor, UpLo&(Lower|Upper)>
|
294
|
+
IsRowMajor ? RowMajor : ColMajor, MatrixType::InnerStrideAtCompileTime, UpLo&(Lower|Upper)>
|
290
295
|
::run(size, depth,
|
291
296
|
&actualLhs.coeffRef(SkipDiag&&(UpLo&Lower)==Lower ? 1 : 0,0), actualLhs.outerStride(),
|
292
297
|
&actualRhs.coeffRef(0,SkipDiag&&(UpLo&Upper)==Upper ? 1 : 0), actualRhs.outerStride(),
|
293
|
-
mat.data() + (SkipDiag ? (bool(IsRowMajor) != ((UpLo&Lower)==Lower) ?
|
298
|
+
mat.data() + (SkipDiag ? (bool(IsRowMajor) != ((UpLo&Lower)==Lower) ? mat.innerStride() : mat.outerStride() ) : 0),
|
299
|
+
mat.innerStride(), mat.outerStride(), actualAlpha, blocking);
|
294
300
|
}
|
295
301
|
};
|
296
302
|
|
297
303
|
template<typename MatrixType, unsigned int UpLo>
|
298
304
|
template<typename ProductType>
|
299
|
-
TriangularView<MatrixType,UpLo>& TriangularViewImpl<MatrixType,UpLo,Dense>::_assignProduct(const ProductType& prod, const Scalar& alpha, bool beta)
|
305
|
+
EIGEN_DEVICE_FUNC TriangularView<MatrixType,UpLo>& TriangularViewImpl<MatrixType,UpLo,Dense>::_assignProduct(const ProductType& prod, const Scalar& alpha, bool beta)
|
300
306
|
{
|
301
307
|
EIGEN_STATIC_ASSERT((UpLo&UnitDiag)==0, WRITING_TO_TRIANGULAR_PART_WITH_UNIT_DIAGONAL_IS_NOT_SUPPORTED);
|
302
308
|
eigen_assert(derived().nestedExpression().rows() == prod.rows() && derived().cols() == prod.cols());
|
303
|
-
|
309
|
+
|
304
310
|
general_product_to_triangular_selector<MatrixType, ProductType, UpLo, internal::traits<ProductType>::InnerSize==1>::run(derived().nestedExpression().const_cast_derived(), prod, alpha, beta);
|
305
|
-
|
311
|
+
|
306
312
|
return derived();
|
307
313
|
}
|
308
314
|
|
@@ -37,10 +37,10 @@ namespace Eigen {
|
|
37
37
|
|
38
38
|
namespace internal {
|
39
39
|
|
40
|
-
template <typename Index, typename Scalar, int AStorageOrder, bool ConjugateA, int ResStorageOrder, int
|
40
|
+
template <typename Index, typename Scalar, int AStorageOrder, bool ConjugateA, int ResStorageOrder, int UpLo>
|
41
41
|
struct general_matrix_matrix_rankupdate :
|
42
42
|
general_matrix_matrix_triangular_product<
|
43
|
-
Index,Scalar,AStorageOrder,ConjugateA,Scalar,AStorageOrder,ConjugateA,ResStorageOrder,UpLo,BuiltIn> {};
|
43
|
+
Index,Scalar,AStorageOrder,ConjugateA,Scalar,AStorageOrder,ConjugateA,ResStorageOrder,1,UpLo,BuiltIn> {};
|
44
44
|
|
45
45
|
|
46
46
|
// try to go to BLAS specialization
|
@@ -48,9 +48,9 @@ struct general_matrix_matrix_rankupdate :
|
|
48
48
|
template <typename Index, int LhsStorageOrder, bool ConjugateLhs, \
|
49
49
|
int RhsStorageOrder, bool ConjugateRhs, int UpLo> \
|
50
50
|
struct general_matrix_matrix_triangular_product<Index,Scalar,LhsStorageOrder,ConjugateLhs, \
|
51
|
-
Scalar,RhsStorageOrder,ConjugateRhs,ColMajor,UpLo,Specialized> { \
|
51
|
+
Scalar,RhsStorageOrder,ConjugateRhs,ColMajor,1,UpLo,Specialized> { \
|
52
52
|
static EIGEN_STRONG_INLINE void run(Index size, Index depth,const Scalar* lhs, Index lhsStride, \
|
53
|
-
const Scalar* rhs, Index rhsStride, Scalar* res, Index resStride, Scalar alpha, level3_blocking<Scalar, Scalar>& blocking) \
|
53
|
+
const Scalar* rhs, Index rhsStride, Scalar* res, Index resIncr, Index resStride, Scalar alpha, level3_blocking<Scalar, Scalar>& blocking) \
|
54
54
|
{ \
|
55
55
|
if ( lhs==rhs && ((UpLo&(Lower|Upper))==UpLo) ) { \
|
56
56
|
general_matrix_matrix_rankupdate<Index,Scalar,LhsStorageOrder,ConjugateLhs,ColMajor,UpLo> \
|
@@ -59,8 +59,8 @@ struct general_matrix_matrix_triangular_product<Index,Scalar,LhsStorageOrder,Con
|
|
59
59
|
general_matrix_matrix_triangular_product<Index, \
|
60
60
|
Scalar, LhsStorageOrder, ConjugateLhs, \
|
61
61
|
Scalar, RhsStorageOrder, ConjugateRhs, \
|
62
|
-
ColMajor, UpLo, BuiltIn> \
|
63
|
-
::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resStride,alpha,blocking); \
|
62
|
+
ColMajor, 1, UpLo, BuiltIn> \
|
63
|
+
::run(size,depth,lhs,lhsStride,rhs,rhsStride,res,resIncr,resStride,alpha,blocking); \
|
64
64
|
} \
|
65
65
|
} \
|
66
66
|
};
|
@@ -51,20 +51,22 @@ template< \
|
|
51
51
|
typename Index, \
|
52
52
|
int LhsStorageOrder, bool ConjugateLhs, \
|
53
53
|
int RhsStorageOrder, bool ConjugateRhs> \
|
54
|
-
struct general_matrix_matrix_product<Index,EIGTYPE,LhsStorageOrder,ConjugateLhs,EIGTYPE,RhsStorageOrder,ConjugateRhs,ColMajor> \
|
54
|
+
struct general_matrix_matrix_product<Index,EIGTYPE,LhsStorageOrder,ConjugateLhs,EIGTYPE,RhsStorageOrder,ConjugateRhs,ColMajor,1> \
|
55
55
|
{ \
|
56
56
|
typedef gebp_traits<EIGTYPE,EIGTYPE> Traits; \
|
57
57
|
\
|
58
58
|
static void run(Index rows, Index cols, Index depth, \
|
59
59
|
const EIGTYPE* _lhs, Index lhsStride, \
|
60
60
|
const EIGTYPE* _rhs, Index rhsStride, \
|
61
|
-
EIGTYPE* res, Index resStride, \
|
61
|
+
EIGTYPE* res, Index resIncr, Index resStride, \
|
62
62
|
EIGTYPE alpha, \
|
63
63
|
level3_blocking<EIGTYPE, EIGTYPE>& /*blocking*/, \
|
64
64
|
GemmParallelInfo<Index>* /*info = 0*/) \
|
65
65
|
{ \
|
66
66
|
using std::conj; \
|
67
67
|
\
|
68
|
+
EIGEN_ONLY_USED_FOR_DEBUG(resIncr); \
|
69
|
+
eigen_assert(resIncr == 1); \
|
68
70
|
char transa, transb; \
|
69
71
|
BlasIndex m, n, k, lda, ldb, ldc; \
|
70
72
|
const EIGTYPE *a, *b; \
|