tomoto 0.2.2 → 0.3.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
data/ext/tomoto/lda.cpp
CHANGED
@@ -3,9 +3,7 @@
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3
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4
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#include <LDA.h>
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5
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6
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-
#include <rice/
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-
#include <rice/Hash.hpp>
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-
#include <rice/Module.hpp>
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6
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+
#include <rice/rice.hpp>
|
9
7
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10
8
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#include "utils.h"
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9
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@@ -22,7 +20,7 @@ void init_lda(Rice::Module& m) {
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Rice::define_class_under<DocumentObject>(m, "Document")
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.define_method(
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"topics",
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-
|
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+
[](DocumentObject& self) {
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Rice::Hash res;
|
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25
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auto topics = self.tm->getTopicsByDoc(self.doc);
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for (size_t i = 0; i < topics.size(); i++) {
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@@ -32,9 +30,9 @@ void init_lda(Rice::Module& m) {
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});
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Rice::define_class_under<tomoto::ILDAModel>(m, "LDA")
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-
.
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.define_singleton_function(
|
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"_new",
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-
|
35
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[](size_t tw, size_t k, tomoto::Float alpha, tomoto::Float eta, size_t seed) {
|
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tomoto::LDAArgs args;
|
39
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args.k = k;
|
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38
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args.alpha = {alpha};
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@@ -43,10 +41,10 @@ void init_lda(Rice::Module& m) {
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args.seed = seed;
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}
|
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return tomoto::ILDAModel::create((tomoto::TermWeight)tw, args);
|
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-
})
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+
}, Rice::Return().takeOwnership())
|
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.define_method(
|
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"_add_doc",
|
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-
|
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+
[](tomoto::ILDAModel& self, std::vector<std::string> words) {
|
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return self.addDoc(buildDoc(words));
|
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49
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})
|
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.define_method(
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@@ -75,7 +73,7 @@ void init_lda(Rice::Module& m) {
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})
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.define_method(
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"alpha",
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-
|
76
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+
[](tomoto::ILDAModel& self) {
|
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Array res;
|
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78
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for (size_t i = 0; i < self.getK(); i++) {
|
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79
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res.push(self.getAlpha(i));
|
@@ -84,18 +82,18 @@ void init_lda(Rice::Module& m) {
|
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82
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})
|
85
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.define_method(
|
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"burn_in",
|
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-
|
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+
[](tomoto::ILDAModel& self) {
|
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86
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return self.getBurnInIteration();
|
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87
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})
|
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88
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.define_method(
|
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"burn_in=",
|
92
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-
|
90
|
+
[](tomoto::ILDAModel& self, size_t iteration) {
|
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91
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self.setBurnInIteration(iteration);
|
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return iteration;
|
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93
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})
|
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.define_method(
|
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"_count_by_topics",
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-
|
96
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+
[](tomoto::ILDAModel& self) {
|
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97
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Array res;
|
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98
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for (auto const& v : self.getCountByTopic()) {
|
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res.push(v);
|
@@ -104,32 +102,33 @@ void init_lda(Rice::Module& m) {
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})
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103
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.define_method(
|
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"docs",
|
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-
|
105
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+
[](tomoto::ILDAModel& self) {
|
108
106
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Array res;
|
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107
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auto n = self.getNumDocs();
|
110
108
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for (size_t i = 0; i < n; i++) {
|
111
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-
|
109
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+
auto v = DocumentObject(self.getDoc(i), &self);
|
110
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+
res.push(Object(Rice::detail::To_Ruby<DocumentObject>().convert(v)));
|
112
111
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}
|
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112
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return res;
|
114
113
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})
|
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114
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.define_method(
|
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"eta",
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-
|
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+
[](tomoto::ILDAModel& self) {
|
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return self.getEta();
|
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})
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.define_method(
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"global_step",
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-
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+
[](tomoto::ILDAModel& self) {
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return self.getGlobalStep();
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})
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.define_method(
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"k",
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-
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126
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+
[](tomoto::ILDAModel& self) {
|
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return self.getK();
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})
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.define_method(
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"_load",
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-
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+
[](tomoto::ILDAModel& self, const char* filename) {
|
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std::ifstream str{ filename, std::ios_base::binary };
|
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133
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if (!str) throw std::runtime_error{ std::string("cannot open file '") + filename + std::string("'") };
|
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134
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std::vector<uint8_t> extra_data;
|
@@ -137,48 +136,48 @@ void init_lda(Rice::Module& m) {
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136
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})
|
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137
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.define_method(
|
139
138
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"ll_per_word",
|
140
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-
|
139
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+
[](tomoto::ILDAModel& self) {
|
141
140
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return self.getLLPerWord();
|
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})
|
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142
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.define_method(
|
144
143
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"num_docs",
|
145
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-
|
144
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+
[](tomoto::ILDAModel& self) {
|
146
145
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return self.getNumDocs();
|
147
146
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})
|
148
147
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.define_method(
|
149
148
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"num_vocabs",
|
150
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-
|
149
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+
[](tomoto::ILDAModel& self) {
|
151
150
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return self.getV();
|
152
151
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})
|
153
152
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.define_method(
|
154
153
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"num_words",
|
155
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-
|
154
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+
[](tomoto::ILDAModel& self) {
|
156
155
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return self.getN();
|
157
156
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})
|
158
157
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.define_method(
|
159
158
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"optim_interval",
|
160
|
-
|
159
|
+
[](tomoto::ILDAModel& self) {
|
161
160
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return self.getOptimInterval();
|
162
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})
|
163
162
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.define_method(
|
164
163
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"optim_interval=",
|
165
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-
|
164
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+
[](tomoto::ILDAModel& self, size_t value) {
|
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165
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self.setOptimInterval(value);
|
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166
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return value;
|
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167
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})
|
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168
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.define_method(
|
170
169
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"perplexity",
|
171
|
-
|
170
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+
[](tomoto::ILDAModel& self) {
|
172
171
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return self.getPerplexity();
|
173
172
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})
|
174
173
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.define_method(
|
175
174
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"_prepare",
|
176
|
-
|
175
|
+
[](tomoto::ILDAModel& self, size_t minCnt, size_t minDf, size_t rmTop) {
|
177
176
|
self.prepare(true, minCnt, minDf, rmTop);
|
178
177
|
})
|
179
178
|
.define_method(
|
180
179
|
"_removed_top_words",
|
181
|
-
|
180
|
+
[](tomoto::ILDAModel& self, size_t rmTop) {
|
182
181
|
Array res;
|
183
182
|
auto dict = self.getVocabDict();
|
184
183
|
size_t size = dict.size();
|
@@ -189,14 +188,14 @@ void init_lda(Rice::Module& m) {
|
|
189
188
|
})
|
190
189
|
.define_method(
|
191
190
|
"_save",
|
192
|
-
|
191
|
+
[](tomoto::ILDAModel& self, const char* filename, bool full) {
|
193
192
|
std::ofstream str{ filename, std::ios_base::binary };
|
194
193
|
std::vector<uint8_t> extra_data;
|
195
194
|
self.saveModel(str, full, &extra_data);
|
196
195
|
})
|
197
196
|
.define_method(
|
198
197
|
"_topic_words",
|
199
|
-
|
198
|
+
[](tomoto::ILDAModel& self, size_t topicId, size_t topN) {
|
200
199
|
Rice::Hash res;
|
201
200
|
for (auto const& v : self.getWordsByTopicSorted(topicId, topN)) {
|
202
201
|
res[v.first] = v.second;
|
@@ -205,17 +204,17 @@ void init_lda(Rice::Module& m) {
|
|
205
204
|
})
|
206
205
|
.define_method(
|
207
206
|
"_train",
|
208
|
-
|
207
|
+
[](tomoto::ILDAModel& self, size_t iteration, size_t workers, size_t ps) {
|
209
208
|
self.train(iteration, workers, (tomoto::ParallelScheme)ps);
|
210
209
|
})
|
211
210
|
.define_method(
|
212
211
|
"_tw",
|
213
|
-
|
212
|
+
[](tomoto::ILDAModel& self) {
|
214
213
|
return (int)self.getTermWeight();
|
215
214
|
})
|
216
215
|
.define_method(
|
217
216
|
"used_vocab_df",
|
218
|
-
|
217
|
+
[](tomoto::ILDAModel& self) {
|
219
218
|
auto vocab = self.getVocabDf();
|
220
219
|
Array res;
|
221
220
|
for (size_t i = 0; i < self.getV(); i++) {
|
@@ -225,7 +224,7 @@ void init_lda(Rice::Module& m) {
|
|
225
224
|
})
|
226
225
|
.define_method(
|
227
226
|
"used_vocab_freq",
|
228
|
-
|
227
|
+
[](tomoto::ILDAModel& self) {
|
229
228
|
auto vocab = self.getVocabCf();
|
230
229
|
Array res;
|
231
230
|
for (size_t i = 0; i < self.getV(); i++) {
|
@@ -235,18 +234,20 @@ void init_lda(Rice::Module& m) {
|
|
235
234
|
})
|
236
235
|
.define_method(
|
237
236
|
"used_vocabs",
|
238
|
-
|
237
|
+
[](tomoto::ILDAModel& self) {
|
239
238
|
auto dict = self.getVocabDict();
|
240
239
|
Array res;
|
241
240
|
auto utf8 = Rice::Class(rb_cEncoding).call("const_get", "UTF_8");
|
242
241
|
for (size_t i = 0; i < self.getV(); i++) {
|
243
|
-
|
242
|
+
VALUE value = Rice::detail::To_Ruby<std::string>().convert(dict.toWord(i));
|
243
|
+
Object obj(value);
|
244
|
+
res.push(obj.call("force_encoding", utf8));
|
244
245
|
}
|
245
246
|
return res;
|
246
247
|
})
|
247
248
|
.define_method(
|
248
249
|
"vocab_df",
|
249
|
-
|
250
|
+
[](tomoto::ILDAModel& self) {
|
250
251
|
auto vocab = self.getVocabDf();
|
251
252
|
Array res;
|
252
253
|
for (size_t i = 0; i < vocab.size(); i++) {
|
@@ -256,7 +257,7 @@ void init_lda(Rice::Module& m) {
|
|
256
257
|
})
|
257
258
|
.define_method(
|
258
259
|
"vocab_freq",
|
259
|
-
|
260
|
+
[](tomoto::ILDAModel& self) {
|
260
261
|
auto vocab = self.getVocabCf();
|
261
262
|
Array res;
|
262
263
|
for (size_t i = 0; i < vocab.size(); i++) {
|
@@ -266,12 +267,14 @@ void init_lda(Rice::Module& m) {
|
|
266
267
|
})
|
267
268
|
.define_method(
|
268
269
|
"vocabs",
|
269
|
-
|
270
|
+
[](tomoto::ILDAModel& self) {
|
270
271
|
auto dict = self.getVocabDict();
|
271
272
|
Array res;
|
272
273
|
auto utf8 = Rice::Class(rb_cEncoding).call("const_get", "UTF_8");
|
273
274
|
for (size_t i = 0; i < dict.size(); i++) {
|
274
|
-
|
275
|
+
VALUE value = Rice::detail::To_Ruby<std::string>().convert(dict.toWord(i));
|
276
|
+
Object obj(value);
|
277
|
+
res.push(obj.call("force_encoding", utf8));
|
275
278
|
}
|
276
279
|
return res;
|
277
280
|
});
|
data/ext/tomoto/llda.cpp
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
#include <LLDA.h>
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
4
|
|
5
5
|
#include "utils.h"
|
6
6
|
|
7
7
|
void init_llda(Rice::Module& m) {
|
8
8
|
Rice::define_class_under<tomoto::ILLDAModel, tomoto::ILDAModel>(m, "LLDA")
|
9
|
-
.
|
9
|
+
.define_singleton_function(
|
10
10
|
"_new",
|
11
|
-
|
11
|
+
[](size_t tw, size_t k, tomoto::Float alpha, tomoto::Float eta, size_t seed) {
|
12
12
|
tomoto::LDAArgs args;
|
13
13
|
args.k = k;
|
14
14
|
args.alpha = {alpha};
|
@@ -17,17 +17,17 @@ void init_llda(Rice::Module& m) {
|
|
17
17
|
args.seed = seed;
|
18
18
|
}
|
19
19
|
return tomoto::ILLDAModel::create((tomoto::TermWeight)tw, args);
|
20
|
-
})
|
20
|
+
}, Rice::Return().takeOwnership())
|
21
21
|
.define_method(
|
22
22
|
"_add_doc",
|
23
|
-
|
23
|
+
[](tomoto::ILLDAModel& self, std::vector<std::string> words, std::vector<std::string> labels) {
|
24
24
|
auto doc = buildDoc(words);
|
25
25
|
doc.misc["labels"] = labels;
|
26
26
|
return self.addDoc(doc);
|
27
27
|
})
|
28
28
|
.define_method(
|
29
29
|
"topics_per_label",
|
30
|
-
|
30
|
+
[](tomoto::ILLDAModel& self) {
|
31
31
|
return self.getNumTopicsPerLabel();
|
32
32
|
});
|
33
33
|
}
|
data/ext/tomoto/mglda.cpp
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
#include <MGLDA.h>
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
4
|
|
5
5
|
#include "utils.h"
|
6
6
|
|
7
7
|
void init_mglda(Rice::Module& m) {
|
8
8
|
Rice::define_class_under<tomoto::IMGLDAModel, tomoto::ILDAModel>(m, "MGLDA")
|
9
|
-
.
|
9
|
+
.define_singleton_function(
|
10
10
|
"_new",
|
11
|
-
|
11
|
+
[](size_t tw, size_t k_g, size_t k_l, size_t t, tomoto::Float alpha_g, tomoto::Float alpha_l, tomoto::Float alpha_mg, tomoto::Float alpha_ml, tomoto::Float eta_g) {
|
12
12
|
tomoto::MGLDAArgs args;
|
13
13
|
args.k = k_g;
|
14
14
|
args.kL = k_l;
|
@@ -20,62 +20,62 @@ void init_mglda(Rice::Module& m) {
|
|
20
20
|
args.eta = eta_g;
|
21
21
|
// TODO more args
|
22
22
|
return tomoto::IMGLDAModel::create((tomoto::TermWeight)tw, args);
|
23
|
-
})
|
23
|
+
}, Rice::Return().takeOwnership())
|
24
24
|
.define_method(
|
25
25
|
"_add_doc",
|
26
|
-
|
26
|
+
[](tomoto::IMGLDAModel& self, std::vector<std::string> words, std::string delimiter) {
|
27
27
|
auto doc = buildDoc(words);
|
28
28
|
doc.misc["delimiter"] = delimiter;
|
29
29
|
return self.addDoc(doc);
|
30
30
|
})
|
31
31
|
.define_method(
|
32
32
|
"alpha_g",
|
33
|
-
|
33
|
+
[](tomoto::IMGLDAModel& self) {
|
34
34
|
return self.getAlpha();
|
35
35
|
})
|
36
36
|
.define_method(
|
37
37
|
"alpha_l",
|
38
|
-
|
38
|
+
[](tomoto::IMGLDAModel& self) {
|
39
39
|
return self.getAlphaL();
|
40
40
|
})
|
41
41
|
.define_method(
|
42
42
|
"alpha_mg",
|
43
|
-
|
43
|
+
[](tomoto::IMGLDAModel& self) {
|
44
44
|
return self.getAlphaM();
|
45
45
|
})
|
46
46
|
.define_method(
|
47
47
|
"alpha_ml",
|
48
|
-
|
48
|
+
[](tomoto::IMGLDAModel& self) {
|
49
49
|
return self.getAlphaML();
|
50
50
|
})
|
51
51
|
.define_method(
|
52
52
|
"eta_g",
|
53
|
-
|
53
|
+
[](tomoto::IMGLDAModel& self) {
|
54
54
|
return self.getEta();
|
55
55
|
})
|
56
56
|
.define_method(
|
57
57
|
"eta_l",
|
58
|
-
|
58
|
+
[](tomoto::IMGLDAModel& self) {
|
59
59
|
return self.getEtaL();
|
60
60
|
})
|
61
61
|
.define_method(
|
62
62
|
"gamma",
|
63
|
-
|
63
|
+
[](tomoto::IMGLDAModel& self) {
|
64
64
|
return self.getGamma();
|
65
65
|
})
|
66
66
|
.define_method(
|
67
67
|
"k_g",
|
68
|
-
|
68
|
+
[](tomoto::IMGLDAModel& self) {
|
69
69
|
return self.getK();
|
70
70
|
})
|
71
71
|
.define_method(
|
72
72
|
"k_l",
|
73
|
-
|
73
|
+
[](tomoto::IMGLDAModel& self) {
|
74
74
|
return self.getKL();
|
75
75
|
})
|
76
76
|
.define_method(
|
77
77
|
"t",
|
78
|
-
|
78
|
+
[](tomoto::IMGLDAModel& self) {
|
79
79
|
return self.getT();
|
80
80
|
});
|
81
81
|
}
|
data/ext/tomoto/pa.cpp
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
#include <PA.h>
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
4
|
|
5
5
|
#include "utils.h"
|
6
6
|
|
7
7
|
void init_pa(Rice::Module& m) {
|
8
8
|
Rice::define_class_under<tomoto::IPAModel, tomoto::ILDAModel>(m, "PA")
|
9
|
-
.
|
9
|
+
.define_singleton_function(
|
10
10
|
"_new",
|
11
|
-
|
11
|
+
[](size_t tw, size_t k1, size_t k2, tomoto::Float alpha, tomoto::Float eta, size_t seed) {
|
12
12
|
tomoto::PAArgs args;
|
13
13
|
args.k = k1;
|
14
14
|
args.k2 = k2;
|
@@ -18,15 +18,15 @@ void init_pa(Rice::Module& m) {
|
|
18
18
|
args.seed = seed;
|
19
19
|
}
|
20
20
|
return tomoto::IPAModel::create((tomoto::TermWeight)tw, args);
|
21
|
-
})
|
21
|
+
}, Rice::Return().takeOwnership())
|
22
22
|
.define_method(
|
23
23
|
"k1",
|
24
|
-
|
24
|
+
[](tomoto::IPAModel& self) {
|
25
25
|
return self.getK();
|
26
26
|
})
|
27
27
|
.define_method(
|
28
28
|
"k2",
|
29
|
-
|
29
|
+
[](tomoto::IPAModel& self) {
|
30
30
|
return self.getK2();
|
31
31
|
});
|
32
32
|
}
|
data/ext/tomoto/plda.cpp
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
#include <PLDA.h>
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
4
|
|
5
5
|
#include "utils.h"
|
6
6
|
|
7
7
|
void init_plda(Rice::Module& m) {
|
8
8
|
Rice::define_class_under<tomoto::IPLDAModel, tomoto::ILLDAModel>(m, "PLDA")
|
9
|
-
.
|
9
|
+
.define_singleton_function(
|
10
10
|
"_new",
|
11
|
-
|
11
|
+
[](size_t tw, size_t latent_topics, tomoto::Float alpha, tomoto::Float eta, size_t seed) {
|
12
12
|
tomoto::PLDAArgs args;
|
13
13
|
args.numLatentTopics = latent_topics;
|
14
14
|
args.alpha = {alpha};
|
@@ -17,17 +17,17 @@ void init_plda(Rice::Module& m) {
|
|
17
17
|
args.seed = seed;
|
18
18
|
}
|
19
19
|
return tomoto::IPLDAModel::create((tomoto::TermWeight)tw, args);
|
20
|
-
})
|
20
|
+
}, Rice::Return().takeOwnership())
|
21
21
|
.define_method(
|
22
22
|
"_add_doc",
|
23
|
-
|
23
|
+
[](tomoto::IPLDAModel& self, std::vector<std::string> words, std::vector<std::string> labels) {
|
24
24
|
auto doc = buildDoc(words);
|
25
25
|
doc.misc["labels"] = labels;
|
26
26
|
return self.addDoc(doc);
|
27
27
|
})
|
28
28
|
.define_method(
|
29
29
|
"latent_topics",
|
30
|
-
|
30
|
+
[](tomoto::IPLDAModel& self) {
|
31
31
|
return self.getNumLatentTopics();
|
32
32
|
});
|
33
33
|
}
|
data/ext/tomoto/slda.cpp
CHANGED
@@ -1,18 +1,18 @@
|
|
1
1
|
#include <SLDA.h>
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
4
|
|
5
5
|
#include "utils.h"
|
6
6
|
|
7
7
|
void init_slda(Rice::Module& m) {
|
8
8
|
Rice::define_class_under<tomoto::ISLDAModel, tomoto::ILDAModel>(m, "SLDA")
|
9
|
-
.
|
9
|
+
.define_singleton_function(
|
10
10
|
"_new",
|
11
|
-
|
11
|
+
[](size_t tw, size_t k, Array rb_vars, tomoto::Float alpha, tomoto::Float eta, std::vector<tomoto::Float> mu, std::vector<tomoto::Float> nu_sq, std::vector<tomoto::Float> glm_param, size_t seed) {
|
12
12
|
std::vector<tomoto::ISLDAModel::GLM> vars;
|
13
13
|
vars.reserve(rb_vars.size());
|
14
14
|
for (auto const& v : rb_vars) {
|
15
|
-
vars.push_back((tomoto::ISLDAModel::GLM)
|
15
|
+
vars.push_back((tomoto::ISLDAModel::GLM) Rice::detail::From_Ruby<int>().convert(v.value()));
|
16
16
|
}
|
17
17
|
tomoto::SLDAArgs args;
|
18
18
|
args.k = k;
|
@@ -26,22 +26,22 @@ void init_slda(Rice::Module& m) {
|
|
26
26
|
args.seed = seed;
|
27
27
|
}
|
28
28
|
return tomoto::ISLDAModel::create((tomoto::TermWeight)tw, args);
|
29
|
-
})
|
29
|
+
}, Rice::Return().takeOwnership())
|
30
30
|
.define_method(
|
31
31
|
"_add_doc",
|
32
|
-
|
32
|
+
[](tomoto::ISLDAModel& self, std::vector<std::string> words, std::vector<tomoto::Float> y) {
|
33
33
|
auto doc = buildDoc(words);
|
34
34
|
doc.misc["y"] = y;
|
35
35
|
return self.addDoc(doc);
|
36
36
|
})
|
37
37
|
.define_method(
|
38
38
|
"f",
|
39
|
-
|
39
|
+
[](tomoto::ISLDAModel& self) {
|
40
40
|
return self.getF();
|
41
41
|
})
|
42
42
|
.define_method(
|
43
43
|
"_var_type",
|
44
|
-
|
44
|
+
[](tomoto::ISLDAModel& self, size_t var_id) {
|
45
45
|
if (var_id >= self.getF()) throw std::runtime_error{ "'var_id' must be < 'f'" };
|
46
46
|
return self.getTypeOfVar(var_id) == tomoto::ISLDAModel::GLM::linear ? "l" : "b";
|
47
47
|
});
|
@@ -1,4 +1,4 @@
|
|
1
|
-
#include <rice/
|
1
|
+
#include <rice/rice.hpp>
|
2
2
|
|
3
3
|
void init_lda(Rice::Module& m);
|
4
4
|
void init_ct(Rice::Module& m);
|
@@ -15,20 +15,20 @@ void init_plda(Rice::Module& m);
|
|
15
15
|
void init_slda(Rice::Module& m);
|
16
16
|
|
17
17
|
extern "C"
|
18
|
-
void
|
18
|
+
void Init_tomoto()
|
19
19
|
{
|
20
20
|
auto m = Rice::define_module("Tomoto")
|
21
|
-
.
|
21
|
+
.define_singleton_function(
|
22
22
|
"isa",
|
23
|
-
|
23
|
+
[]() {
|
24
24
|
#ifdef __AVX2__
|
25
|
-
return "avx2";
|
25
|
+
return Rice::String("avx2");
|
26
26
|
#elif defined(__AVX__)
|
27
|
-
return "avx";
|
27
|
+
return Rice::String("avx");
|
28
28
|
#elif defined(__SSE2__) || defined(__x86_64__) || defined(_WIN64)
|
29
|
-
return "sse2";
|
29
|
+
return Rice::String("sse2");
|
30
30
|
#else
|
31
|
-
return "none";
|
31
|
+
return Rice::String("none");
|
32
32
|
#endif
|
33
33
|
});
|
34
34
|
|
data/ext/tomoto/utils.h
CHANGED
@@ -1,80 +1,26 @@
|
|
1
1
|
#pragma once
|
2
2
|
|
3
|
-
#include <rice/
|
3
|
+
#include <rice/rice.hpp>
|
4
|
+
#include <rice/stl.hpp>
|
4
5
|
|
5
6
|
using Rice::Array;
|
6
7
|
using Rice::Object;
|
7
8
|
|
8
|
-
|
9
|
-
inline
|
10
|
-
Object to_ruby<std::vector<tomoto::Float>>(std::vector<tomoto::Float> const & x)
|
9
|
+
namespace Rice::detail
|
11
10
|
{
|
12
|
-
|
13
|
-
|
14
|
-
|
15
|
-
|
16
|
-
|
17
|
-
|
18
|
-
|
19
|
-
|
20
|
-
|
21
|
-
|
22
|
-
|
23
|
-
|
24
|
-
|
25
|
-
res.push(v);
|
26
|
-
}
|
27
|
-
return res;
|
28
|
-
}
|
29
|
-
|
30
|
-
template<>
|
31
|
-
inline
|
32
|
-
Object to_ruby<std::vector<uint64_t>>(std::vector<uint64_t> const & x)
|
33
|
-
{
|
34
|
-
Array res;
|
35
|
-
for (auto const& v : x) {
|
36
|
-
res.push(v);
|
37
|
-
}
|
38
|
-
return res;
|
39
|
-
}
|
40
|
-
|
41
|
-
template<>
|
42
|
-
inline
|
43
|
-
std::vector<std::string> from_ruby<std::vector<std::string>>(Object x)
|
44
|
-
{
|
45
|
-
Array a = Array(x);
|
46
|
-
std::vector<std::string> res;
|
47
|
-
res.reserve(a.size());
|
48
|
-
for (auto const& v : a) {
|
49
|
-
res.push_back(from_ruby<std::string>(v));
|
50
|
-
}
|
51
|
-
return res;
|
52
|
-
}
|
53
|
-
|
54
|
-
template<>
|
55
|
-
inline
|
56
|
-
std::vector<tomoto::Float> from_ruby<std::vector<tomoto::Float>>(Object x)
|
57
|
-
{
|
58
|
-
Array a = Array(x);
|
59
|
-
std::vector<tomoto::Float> res;
|
60
|
-
res.reserve(a.size());
|
61
|
-
for (auto const& v : a) {
|
62
|
-
res.push_back(from_ruby<tomoto::Float>(v));
|
63
|
-
}
|
64
|
-
return res;
|
65
|
-
}
|
66
|
-
|
67
|
-
template<>
|
68
|
-
inline
|
69
|
-
std::vector<uint64_t> from_ruby<std::vector<uint64_t>>(Object x)
|
70
|
-
{
|
71
|
-
Array a = Array(x);
|
72
|
-
std::vector<uint64_t> res;
|
73
|
-
res.reserve(a.size());
|
74
|
-
for (auto const& v : a) {
|
75
|
-
res.push_back(from_ruby<uint64_t>(v));
|
76
|
-
}
|
77
|
-
return res;
|
11
|
+
template<typename T>
|
12
|
+
class To_Ruby<std::vector<T>>
|
13
|
+
{
|
14
|
+
public:
|
15
|
+
VALUE convert(std::vector<T> const & x)
|
16
|
+
{
|
17
|
+
auto a = rb_ary_new2(x.size());
|
18
|
+
for (const auto& v : x) {
|
19
|
+
detail::protect(rb_ary_push, a, To_Ruby<T>().convert(v));
|
20
|
+
}
|
21
|
+
return a;
|
22
|
+
}
|
23
|
+
};
|
78
24
|
}
|
79
25
|
|
80
26
|
inline tomoto::RawDoc buildDoc(std::vector<std::string>& words) {
|
data/lib/tomoto/version.rb
CHANGED