tomoto 0.2.2 → 0.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -10,7 +10,7 @@ namespace tomoto
10
10
  template<typename _Ty = float>
11
11
  struct MultiNormalDistribution
12
12
  {
13
- static constexpr _Ty log2pi = 1.83787706641;
13
+ static constexpr _Ty log2pi = (_Ty)1.83787706641;
14
14
  Eigen::Matrix<_Ty, -1, 1> mean;
15
15
  Eigen::Matrix<_Ty, -1, -1> cov, l;
16
16
  _Ty logDet = 0;
@@ -58,7 +58,7 @@ namespace tomoto
58
58
  }
59
59
  else
60
60
  {
61
- z[j] = rtnorm::rtnorm(rng, lower_pos, upper_pos);
61
+ z[j] = (_Ty)rtnorm::rtnorm(rng, lower_pos, upper_pos);
62
62
  }
63
63
  }
64
64
  }
@@ -22,6 +22,12 @@ namespace tomoto
22
22
  public:
23
23
  using std::invalid_argument::invalid_argument;
24
24
  };
25
+
26
+ class EmptyWordArgument : public InvalidArgument
27
+ {
28
+ public:
29
+ using InvalidArgument::InvalidArgument;
30
+ };
25
31
  }
26
32
  }
27
33
 
@@ -141,9 +141,9 @@ namespace tomoto
141
141
  float forSmall(float x)
142
142
  {
143
143
  if (x == 0) return -INFINITY;
144
- return log(x + 2) - 0.5f / (x + 2) - 1 / 12.f / pow(x + 2, 2) - 1 / (x + 1) - 1 / x;
144
+ return logf(x + 2) - 0.5f / (x + 2) - 1 / 12.f / powf(x + 2, 2) - 1 / (x + 1) - 1 / x;
145
145
  }
146
- float forLarge(float x) { return log(x) - 0.5f / x - 1 / 12.f / pow(x, 2); }
146
+ float forLarge(float x) { return logf(x) - 0.5f / x - 1 / 12.f / powf(x, 2); }
147
147
  float forNonFinite(float x) { if (std::isnan(x) || x < 0) return NAN; return INFINITY;}
148
148
  };
149
149
 
@@ -1,10 +1,8 @@
1
1
  #pragma once
2
2
 
3
3
  #include <random>
4
- #ifdef __AVX__
4
+ #if defined(__AVX__) || defined(__SSE2__)
5
5
  #include <immintrin.h>
6
- #elif defined(__SSE2__) || defined(_WIN64)
7
- #include <xmmintrin.h>
8
6
  #else
9
7
 
10
8
  #endif
@@ -23,17 +21,21 @@ namespace tomoto
23
21
  return __popcnt(i);
24
22
  }
25
23
 
26
- #ifdef _WIN64
24
+ #ifdef _WIN64
27
25
  inline uint64_t log2_ceil(uint64_t i)
28
26
  {
29
- return 64 - __lzcnt64(i) - ((i & (i - 1)) == 0 ? 1 : 0);
27
+ unsigned long idx;
28
+ if (!_BitScanReverse64(&idx, i)) return 0;
29
+ return idx + 1 - ((i & (i - 1)) == 0 ? 1 : 0);
30
30
  }
31
- #else
31
+ #else
32
32
  inline uint32_t log2_ceil(uint32_t i)
33
33
  {
34
- return 32 - __lzcnt(i) - ((i & (i - 1)) == 0 ? 1 : 0);
34
+ unsigned long idx;
35
+ if (!_BitScanReverse(&idx, i)) return 0;
36
+ return idx + 1 - ((i & (i - 1)) == 0 ? 1 : 0);
35
37
  }
36
- #endif
38
+ #endif
37
39
 
38
40
  #else
39
41
  inline uint32_t popcnt(uint32_t i)
@@ -41,22 +43,22 @@ namespace tomoto
41
43
  return __builtin_popcount(i);
42
44
  }
43
45
 
44
- #ifdef __x86_64
46
+ #ifdef __x86_64
45
47
  inline uint64_t log2_ceil(uint64_t i)
46
48
  {
47
49
  return 64 - __builtin_clzll(i) - ((i & (i - 1)) == 0 ? 1 : 0);
48
50
  }
49
- #else
51
+ #else
50
52
  inline uint32_t log2_ceil(uint32_t i)
51
53
  {
52
54
  return 32 - __builtin_clz(i) - ((i & (i - 1)) == 0 ? 1 : 0);
53
55
  }
54
- #endif
56
+ #endif
55
57
 
56
58
  #endif
57
59
 
58
60
 
59
- #if defined(__SSE2__) || defined(_WIN64)
61
+ #if defined(__SSE2__)
60
62
  inline __m128 scan_SSE(__m128 x)
61
63
  {
62
64
  x = _mm_add_ps(x, _mm_castsi128_ps(_mm_slli_si128(_mm_castps_si128(x), 4)));
@@ -89,7 +89,7 @@ namespace tomoto
89
89
  template<> struct gen_seq<1> : seq<0> {};
90
90
 
91
91
  template <size_t _n, size_t ... _is>
92
- std::array<char, _n - 1> to_array(const char(&a)[_n], seq<_is...>)
92
+ constexpr std::array<char, sizeof... (_is)> to_array(const char(&a)[_n], seq<_is...>)
93
93
  {
94
94
  return { {a[_is]...} };
95
95
  }
@@ -101,7 +101,13 @@ namespace tomoto
101
101
  }
102
102
 
103
103
  template <size_t _n, size_t ... _is>
104
- std::array<char, _n> to_arrayz(const char(&a)[_n], seq<_is...>)
104
+ constexpr std::array<char, sizeof... (_is) + 1> to_arrayz(const char(&a)[_n], seq<_is...>)
105
+ {
106
+ return { {a[_is]..., 0} };
107
+ }
108
+
109
+ template <size_t _n, size_t ... _is>
110
+ constexpr std::array<char, sizeof... (_is) + 1> to_arrayz(const std::array<char, _n>& a, seq<_is...>)
105
111
  {
106
112
  return { {a[_is]..., 0} };
107
113
  }
@@ -132,17 +138,24 @@ namespace tomoto
132
138
  return std::string{ m.begin(), m.end() };
133
139
  }
134
140
 
135
- Key(const std::array<char, _len>& _m) : m(_m)
141
+ constexpr Key(const std::array<char, _len>& _m) : m(_m)
136
142
  {
137
143
  }
138
144
 
139
- Key(std::array<char, _len>&& _m) : m(_m)
145
+ constexpr Key(std::array<char, _len>&& _m) : m(_m)
140
146
  {
141
147
  }
142
148
 
143
- Key(const char(&a)[_len + 1]) : Key{ detail::to_array(a) }
149
+ constexpr Key(const char(&a)[_len + 1]) : Key{ detail::to_array(a) }
144
150
  {
145
151
  }
152
+
153
+ constexpr char operator[](size_t n) const
154
+ {
155
+ return n < _len ? m[n] : throw std::out_of_range("");
156
+ }
157
+
158
+ constexpr size_t size() const { return _len; }
146
159
  };
147
160
 
148
161
  template<typename _Ty>
@@ -161,12 +174,24 @@ namespace tomoto
161
174
  return Key<_n - 1>{detail::to_array(a)};
162
175
  }
163
176
 
177
+ template<size_t _n>
178
+ constexpr Key<_n> to_key(const Key<_n>& key)
179
+ {
180
+ return key;
181
+ }
182
+
164
183
  template<size_t _n>
165
184
  constexpr Key<_n> to_keyz(const char(&a)[_n])
166
185
  {
167
186
  return Key<_n>{detail::to_arrayz(a)};
168
187
  }
169
188
 
189
+ template<size_t _n>
190
+ constexpr Key<_n + 1> to_keyz(const Key<_n>& key)
191
+ {
192
+ return Key<_n + 1>{detail::to_arrayz(key.m, detail::GenSeq<_n>{})};
193
+ }
194
+
170
195
  template<typename _Ty, typename = void>
171
196
  struct Serializer;
172
197
 
@@ -1,7 +1,4 @@
1
1
  #pragma once
2
- #if _WIN64 || __x86_64__
3
- #define __SSE2__
4
- #endif
5
2
  #include "sse_mathfun.h"
6
3
 
7
4
  // approximation : lgamma(z) ~= (z+2.5)ln(z+3) - z - 3 + 0.5 ln (2pi) + 1/12/(z + 3) - ln (z(z+1)(z+2))
metadata CHANGED
@@ -1,29 +1,29 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: tomoto
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.2
4
+ version: 0.3.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - Andrew Kane
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2021-08-24 00:00:00.000000000 Z
11
+ date: 2022-10-04 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: rice
15
15
  requirement: !ruby/object:Gem::Requirement
16
16
  requirements:
17
- - - "~>"
17
+ - - ">="
18
18
  - !ruby/object:Gem::Version
19
- version: '3'
19
+ version: '4'
20
20
  type: :runtime
21
21
  prerelease: false
22
22
  version_requirements: !ruby/object:Gem::Requirement
23
23
  requirements:
24
- - - "~>"
24
+ - - ">="
25
25
  - !ruby/object:Gem::Version
26
- version: '3'
26
+ version: '4'
27
27
  description:
28
28
  email: andrew@ankane.org
29
29
  executables: []
@@ -37,7 +37,6 @@ files:
37
37
  - ext/tomoto/ct.cpp
38
38
  - ext/tomoto/dmr.cpp
39
39
  - ext/tomoto/dt.cpp
40
- - ext/tomoto/ext.cpp
41
40
  - ext/tomoto/extconf.rb
42
41
  - ext/tomoto/gdmr.cpp
43
42
  - ext/tomoto/hdp.cpp
@@ -49,6 +48,7 @@ files:
49
48
  - ext/tomoto/pa.cpp
50
49
  - ext/tomoto/plda.cpp
51
50
  - ext/tomoto/slda.cpp
51
+ - ext/tomoto/tomoto.cpp
52
52
  - ext/tomoto/utils.h
53
53
  - lib/tomoto.rb
54
54
  - lib/tomoto/ct.rb
@@ -78,16 +78,25 @@ files:
78
78
  - vendor/EigenRand/EigenRand/PacketFilter.h
79
79
  - vendor/EigenRand/EigenRand/PacketRandomEngine.h
80
80
  - vendor/EigenRand/EigenRand/RandUtils.h
81
+ - vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h
82
+ - vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h
83
+ - vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h
84
+ - vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h
85
+ - vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h
86
+ - vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h
87
+ - vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h
88
+ - vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h
89
+ - vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h
81
90
  - vendor/EigenRand/EigenRand/doc.h
82
91
  - vendor/EigenRand/LICENSE
83
92
  - vendor/EigenRand/README.md
93
+ - vendor/eigen/COPYING.APACHE
84
94
  - vendor/eigen/COPYING.BSD
85
95
  - vendor/eigen/COPYING.GPL
86
96
  - vendor/eigen/COPYING.LGPL
87
97
  - vendor/eigen/COPYING.MINPACK
88
98
  - vendor/eigen/COPYING.MPL2
89
99
  - vendor/eigen/COPYING.README
90
- - vendor/eigen/Eigen/CMakeLists.txt
91
100
  - vendor/eigen/Eigen/Cholesky
92
101
  - vendor/eigen/Eigen/CholmodSupport
93
102
  - vendor/eigen/Eigen/Core
@@ -98,6 +107,7 @@ files:
98
107
  - vendor/eigen/Eigen/Householder
99
108
  - vendor/eigen/Eigen/IterativeLinearSolvers
100
109
  - vendor/eigen/Eigen/Jacobi
110
+ - vendor/eigen/Eigen/KLUSupport
101
111
  - vendor/eigen/Eigen/LU
102
112
  - vendor/eigen/Eigen/MetisSupport
103
113
  - vendor/eigen/Eigen/OrderingMethods
@@ -121,6 +131,7 @@ files:
121
131
  - vendor/eigen/Eigen/src/Cholesky/LLT.h
122
132
  - vendor/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h
123
133
  - vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h
134
+ - vendor/eigen/Eigen/src/Core/ArithmeticSequence.h
124
135
  - vendor/eigen/Eigen/src/Core/Array.h
125
136
  - vendor/eigen/Eigen/src/Core/ArrayBase.h
126
137
  - vendor/eigen/Eigen/src/Core/ArrayWrapper.h
@@ -153,6 +164,7 @@ files:
153
164
  - vendor/eigen/Eigen/src/Core/GenericPacketMath.h
154
165
  - vendor/eigen/Eigen/src/Core/GlobalFunctions.h
155
166
  - vendor/eigen/Eigen/src/Core/IO.h
167
+ - vendor/eigen/Eigen/src/Core/IndexedView.h
156
168
  - vendor/eigen/Eigen/src/Core/Inverse.h
157
169
  - vendor/eigen/Eigen/src/Core/Map.h
158
170
  - vendor/eigen/Eigen/src/Core/MapBase.h
@@ -163,6 +175,7 @@ files:
163
175
  - vendor/eigen/Eigen/src/Core/NestByValue.h
164
176
  - vendor/eigen/Eigen/src/Core/NoAlias.h
165
177
  - vendor/eigen/Eigen/src/Core/NumTraits.h
178
+ - vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h
166
179
  - vendor/eigen/Eigen/src/Core/PermutationMatrix.h
167
180
  - vendor/eigen/Eigen/src/Core/PlainObjectBase.h
168
181
  - vendor/eigen/Eigen/src/Core/Product.h
@@ -171,6 +184,7 @@ files:
171
184
  - vendor/eigen/Eigen/src/Core/Redux.h
172
185
  - vendor/eigen/Eigen/src/Core/Ref.h
173
186
  - vendor/eigen/Eigen/src/Core/Replicate.h
187
+ - vendor/eigen/Eigen/src/Core/Reshaped.h
174
188
  - vendor/eigen/Eigen/src/Core/ReturnByValue.h
175
189
  - vendor/eigen/Eigen/src/Core/Reverse.h
176
190
  - vendor/eigen/Eigen/src/Core/Select.h
@@ -180,6 +194,7 @@ files:
180
194
  - vendor/eigen/Eigen/src/Core/SolveTriangular.h
181
195
  - vendor/eigen/Eigen/src/Core/SolverBase.h
182
196
  - vendor/eigen/Eigen/src/Core/StableNorm.h
197
+ - vendor/eigen/Eigen/src/Core/StlIterators.h
183
198
  - vendor/eigen/Eigen/src/Core/Stride.h
184
199
  - vendor/eigen/Eigen/src/Core/Swap.h
185
200
  - vendor/eigen/Eigen/src/Core/Transpose.h
@@ -192,26 +207,48 @@ files:
192
207
  - vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h
193
208
  - vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h
194
209
  - vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h
210
+ - vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h
195
211
  - vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h
196
212
  - vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h
213
+ - vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h
197
214
  - vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h
198
215
  - vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h
216
+ - vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
217
+ - vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
218
+ - vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
199
219
  - vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h
200
220
  - vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h
201
- - vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h
202
- - vendor/eigen/Eigen/src/Core/arch/CUDA/MathFunctions.h
203
- - vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h
204
- - vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h
205
- - vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h
221
+ - vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h
206
222
  - vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h
223
+ - vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
224
+ - vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
225
+ - vendor/eigen/Eigen/src/Core/arch/Default/Half.h
207
226
  - vendor/eigen/Eigen/src/Core/arch/Default/Settings.h
227
+ - vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h
228
+ - vendor/eigen/Eigen/src/Core/arch/GPU/MathFunctions.h
229
+ - vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h
230
+ - vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h
231
+ - vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h
232
+ - vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h
233
+ - vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h
234
+ - vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h
208
235
  - vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h
236
+ - vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
209
237
  - vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h
210
238
  - vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h
239
+ - vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h
211
240
  - vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h
212
241
  - vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h
213
242
  - vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h
214
243
  - vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h
244
+ - vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h
245
+ - vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h
246
+ - vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h
247
+ - vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h
248
+ - vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h
249
+ - vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h
250
+ - vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
251
+ - vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h
215
252
  - vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h
216
253
  - vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h
217
254
  - vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h
@@ -243,16 +280,21 @@ files:
243
280
  - vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
244
281
  - vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h
245
282
  - vendor/eigen/Eigen/src/Core/util/BlasUtil.h
283
+ - vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h
246
284
  - vendor/eigen/Eigen/src/Core/util/Constants.h
247
285
  - vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h
248
286
  - vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h
287
+ - vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h
288
+ - vendor/eigen/Eigen/src/Core/util/IntegralConstant.h
249
289
  - vendor/eigen/Eigen/src/Core/util/MKL_support.h
250
290
  - vendor/eigen/Eigen/src/Core/util/Macros.h
251
291
  - vendor/eigen/Eigen/src/Core/util/Memory.h
252
292
  - vendor/eigen/Eigen/src/Core/util/Meta.h
253
293
  - vendor/eigen/Eigen/src/Core/util/NonMPL2.h
254
294
  - vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h
295
+ - vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h
255
296
  - vendor/eigen/Eigen/src/Core/util/StaticAssert.h
297
+ - vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h
256
298
  - vendor/eigen/Eigen/src/Core/util/XprHelper.h
257
299
  - vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h
258
300
  - vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h
@@ -282,7 +324,7 @@ files:
282
324
  - vendor/eigen/Eigen/src/Geometry/Transform.h
283
325
  - vendor/eigen/Eigen/src/Geometry/Translation.h
284
326
  - vendor/eigen/Eigen/src/Geometry/Umeyama.h
285
- - vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h
327
+ - vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h
286
328
  - vendor/eigen/Eigen/src/Householder/BlockHouseholder.h
287
329
  - vendor/eigen/Eigen/src/Householder/Householder.h
288
330
  - vendor/eigen/Eigen/src/Householder/HouseholderSequence.h
@@ -295,12 +337,13 @@ files:
295
337
  - vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
296
338
  - vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
297
339
  - vendor/eigen/Eigen/src/Jacobi/Jacobi.h
340
+ - vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h
298
341
  - vendor/eigen/Eigen/src/LU/Determinant.h
299
342
  - vendor/eigen/Eigen/src/LU/FullPivLU.h
300
343
  - vendor/eigen/Eigen/src/LU/InverseImpl.h
301
344
  - vendor/eigen/Eigen/src/LU/PartialPivLU.h
302
345
  - vendor/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h
303
- - vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h
346
+ - vendor/eigen/Eigen/src/LU/arch/InverseSize4.h
304
347
  - vendor/eigen/Eigen/src/MetisSupport/MetisSupport.h
305
348
  - vendor/eigen/Eigen/src/OrderingMethods/Amd.h
306
349
  - vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h
@@ -387,14 +430,17 @@ files:
387
430
  - vendor/eigen/Eigen/src/plugins/BlockMethods.h
388
431
  - vendor/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h
389
432
  - vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h
433
+ - vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h
390
434
  - vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h
391
435
  - vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h
436
+ - vendor/eigen/Eigen/src/plugins/ReshapedMethods.h
392
437
  - vendor/eigen/README.md
393
438
  - vendor/eigen/bench/README.txt
394
439
  - vendor/eigen/bench/btl/COPYING
395
440
  - vendor/eigen/bench/btl/README
396
441
  - vendor/eigen/bench/tensors/README
397
442
  - vendor/eigen/blas/README.txt
443
+ - vendor/eigen/ci/README.md
398
444
  - vendor/eigen/demos/mandelbrot/README
399
445
  - vendor/eigen/demos/mix_eigen_and_c/README
400
446
  - vendor/eigen/demos/opengl/README
@@ -487,7 +533,7 @@ files:
487
533
  - vendor/variant/include/mapbox/recursive_wrapper.hpp
488
534
  - vendor/variant/include/mapbox/variant.hpp
489
535
  - vendor/variant/include/mapbox/variant_io.hpp
490
- homepage: https://github.com/ankane/tomoto
536
+ homepage: https://github.com/ankane/tomoto-ruby
491
537
  licenses:
492
538
  - MIT
493
539
  metadata: {}
@@ -499,14 +545,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
499
545
  requirements:
500
546
  - - ">="
501
547
  - !ruby/object:Gem::Version
502
- version: '2.6'
548
+ version: '2.7'
503
549
  required_rubygems_version: !ruby/object:Gem::Requirement
504
550
  requirements:
505
551
  - - ">="
506
552
  - !ruby/object:Gem::Version
507
553
  version: '0'
508
554
  requirements: []
509
- rubygems_version: 3.2.22
555
+ rubygems_version: 3.3.7
510
556
  signing_key:
511
557
  specification_version: 4
512
558
  summary: High performance topic modeling for Ruby
@@ -1,19 +0,0 @@
1
- include(RegexUtils)
2
- test_escape_string_as_regex()
3
-
4
- file(GLOB Eigen_directory_files "*")
5
-
6
- escape_string_as_regex(ESCAPED_CMAKE_CURRENT_SOURCE_DIR "${CMAKE_CURRENT_SOURCE_DIR}")
7
-
8
- foreach(f ${Eigen_directory_files})
9
- if(NOT f MATCHES "\\.txt" AND NOT f MATCHES "${ESCAPED_CMAKE_CURRENT_SOURCE_DIR}/[.].+" AND NOT f MATCHES "${ESCAPED_CMAKE_CURRENT_SOURCE_DIR}/src")
10
- list(APPEND Eigen_directory_files_to_install ${f})
11
- endif()
12
- endforeach(f ${Eigen_directory_files})
13
-
14
- install(FILES
15
- ${Eigen_directory_files_to_install}
16
- DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen COMPONENT Devel
17
- )
18
-
19
- install(DIRECTORY src DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen COMPONENT Devel FILES_MATCHING PATTERN "*.h")