tomoto 0.2.2 → 0.3.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -76,6 +76,20 @@ conjugate() const
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/// \returns an expression of the complex conjugate of \c *this if Cond==true, returns derived() otherwise.
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///
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EIGEN_DOC_UNARY_ADDONS(conjugate,complex conjugate)
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///
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/// \sa conjugate()
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template<bool Cond>
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EIGEN_DEVICE_FUNC
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inline typename internal::conditional<Cond,ConjugateReturnType,const Derived&>::type
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conjugateIf() const
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{
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typedef typename internal::conditional<Cond,ConjugateReturnType,const Derived&>::type ReturnType;
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return ReturnType(derived());
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}
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// This file is part of Eigen, a lightweight C++ template library
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// for linear algebra.
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//
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// Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
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#if !defined(EIGEN_PARSED_BY_DOXYGEN)
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// This file is automatically included twice to generate const and non-const versions
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#ifndef EIGEN_INDEXED_VIEW_METHOD_2ND_PASS
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#define EIGEN_INDEXED_VIEW_METHOD_CONST const
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#define EIGEN_INDEXED_VIEW_METHOD_TYPE ConstIndexedViewType
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#else
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#define EIGEN_INDEXED_VIEW_METHOD_CONST
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#define EIGEN_INDEXED_VIEW_METHOD_TYPE IndexedViewType
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#endif
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#ifndef EIGEN_INDEXED_VIEW_METHOD_2ND_PASS
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protected:
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// define some aliases to ease readability
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template<typename Indices>
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struct IvcRowType : public internal::IndexedViewCompatibleType<Indices,RowsAtCompileTime> {};
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template<typename Indices>
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struct IvcColType : public internal::IndexedViewCompatibleType<Indices,ColsAtCompileTime> {};
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struct IvcType : public internal::IndexedViewCompatibleType<Indices,SizeAtCompileTime> {};
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typedef typename internal::IndexedViewCompatibleType<Index,1>::type IvcIndex;
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template<typename Indices>
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typename IvcRowType<Indices>::type
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ivcRow(const Indices& indices) const {
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return internal::makeIndexedViewCompatible(indices, internal::variable_if_dynamic<Index,RowsAtCompileTime>(derived().rows()),Specialized);
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}
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template<typename Indices>
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typename IvcColType<Indices>::type
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ivcCol(const Indices& indices) const {
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return internal::makeIndexedViewCompatible(indices, internal::variable_if_dynamic<Index,ColsAtCompileTime>(derived().cols()),Specialized);
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}
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template<typename Indices>
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typename IvcColType<Indices>::type
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ivcSize(const Indices& indices) const {
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return internal::makeIndexedViewCompatible(indices, internal::variable_if_dynamic<Index,SizeAtCompileTime>(derived().size()),Specialized);
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}
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public:
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#endif
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template<typename RowIndices, typename ColIndices>
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struct EIGEN_INDEXED_VIEW_METHOD_TYPE {
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typedef IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,
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typename IvcRowType<RowIndices>::type,
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typename IvcColType<ColIndices>::type> type;
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};
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// This is the generic version
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template<typename RowIndices, typename ColIndices>
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typename internal::enable_if<internal::valid_indexed_view_overload<RowIndices,ColIndices>::value
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&& internal::traits<typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type>::ReturnAsIndexedView,
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typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type >::type
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operator()(const RowIndices& rowIndices, const ColIndices& colIndices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type
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(derived(), ivcRow(rowIndices), ivcCol(colIndices));
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}
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// The following overload returns a Block<> object
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template<typename RowIndices, typename ColIndices>
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typename internal::enable_if<internal::valid_indexed_view_overload<RowIndices,ColIndices>::value
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&& internal::traits<typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type>::ReturnAsBlock,
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typename internal::traits<typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type>::BlockType>::type
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operator()(const RowIndices& rowIndices, const ColIndices& colIndices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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typedef typename internal::traits<typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type>::BlockType BlockType;
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typename IvcRowType<RowIndices>::type actualRowIndices = ivcRow(rowIndices);
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typename IvcColType<ColIndices>::type actualColIndices = ivcCol(colIndices);
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return BlockType(derived(),
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internal::first(actualRowIndices),
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internal::first(actualColIndices),
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internal::size(actualRowIndices),
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internal::size(actualColIndices));
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}
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// The following overload returns a Scalar
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template<typename RowIndices, typename ColIndices>
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typename internal::enable_if<internal::valid_indexed_view_overload<RowIndices,ColIndices>::value
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&& internal::traits<typename EIGEN_INDEXED_VIEW_METHOD_TYPE<RowIndices,ColIndices>::type>::ReturnAsScalar,
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CoeffReturnType >::type
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operator()(const RowIndices& rowIndices, const ColIndices& colIndices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return Base::operator()(internal::eval_expr_given_size(rowIndices,rows()),internal::eval_expr_given_size(colIndices,cols()));
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}
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#if EIGEN_HAS_STATIC_ARRAY_TEMPLATE
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// The following three overloads are needed to handle raw Index[N] arrays.
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const RowIndicesT (&)[RowIndicesN],typename IvcColType<ColIndices>::type>
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operator()(const RowIndicesT (&rowIndices)[RowIndicesN], const ColIndices& colIndices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const RowIndicesT (&)[RowIndicesN],typename IvcColType<ColIndices>::type>
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(derived(), rowIndices, ivcCol(colIndices));
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}
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template<typename RowIndices, typename ColIndicesT, std::size_t ColIndicesN>
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,typename IvcRowType<RowIndices>::type, const ColIndicesT (&)[ColIndicesN]>
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operator()(const RowIndices& rowIndices, const ColIndicesT (&colIndices)[ColIndicesN]) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,typename IvcRowType<RowIndices>::type,const ColIndicesT (&)[ColIndicesN]>
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(derived(), ivcRow(rowIndices), colIndices);
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}
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template<typename RowIndicesT, std::size_t RowIndicesN, typename ColIndicesT, std::size_t ColIndicesN>
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const RowIndicesT (&)[RowIndicesN], const ColIndicesT (&)[ColIndicesN]>
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operator()(const RowIndicesT (&rowIndices)[RowIndicesN], const ColIndicesT (&colIndices)[ColIndicesN]) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const RowIndicesT (&)[RowIndicesN],const ColIndicesT (&)[ColIndicesN]>
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(derived(), rowIndices, colIndices);
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}
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#endif // EIGEN_HAS_STATIC_ARRAY_TEMPLATE
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template<typename Indices>
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typename internal::enable_if<
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IsRowMajor && (!(internal::get_compile_time_incr<typename IvcType<Indices>::type>::value==1 || internal::is_valid_index_type<Indices>::value)),
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,IvcIndex,typename IvcType<Indices>::type> >::type
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operator()(const Indices& indices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,IvcIndex,typename IvcType<Indices>::type>
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(derived(), IvcIndex(0), ivcCol(indices));
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}
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template<typename Indices>
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typename internal::enable_if<
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(!IsRowMajor) && (!(internal::get_compile_time_incr<typename IvcType<Indices>::type>::value==1 || internal::is_valid_index_type<Indices>::value)),
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,typename IvcType<Indices>::type,IvcIndex> >::type
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operator()(const Indices& indices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,typename IvcType<Indices>::type,IvcIndex>
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(derived(), ivcRow(indices), IvcIndex(0));
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}
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template<typename Indices>
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typename internal::enable_if<
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(internal::get_compile_time_incr<typename IvcType<Indices>::type>::value==1) && (!internal::is_valid_index_type<Indices>::value) && (!symbolic::is_symbolic<Indices>::value),
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VectorBlock<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,internal::array_size<Indices>::value> >::type
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operator()(const Indices& indices) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
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typename IvcType<Indices>::type actualIndices = ivcSize(indices);
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return VectorBlock<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,internal::array_size<Indices>::value>
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(derived(), internal::first(actualIndices), internal::size(actualIndices));
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}
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template<typename IndexType>
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typename internal::enable_if<symbolic::is_symbolic<IndexType>::value, CoeffReturnType >::type
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operator()(const IndexType& id) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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return Base::operator()(internal::eval_expr_given_size(id,size()));
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}
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#if EIGEN_HAS_STATIC_ARRAY_TEMPLATE
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template<typename IndicesT, std::size_t IndicesN>
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typename internal::enable_if<IsRowMajor,
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,IvcIndex,const IndicesT (&)[IndicesN]> >::type
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operator()(const IndicesT (&indices)[IndicesN]) EIGEN_INDEXED_VIEW_METHOD_CONST
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{
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EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,IvcIndex,const IndicesT (&)[IndicesN]>
|
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(derived(), IvcIndex(0), indices);
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}
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template<typename IndicesT, std::size_t IndicesN>
|
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typename internal::enable_if<!IsRowMajor,
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IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const IndicesT (&)[IndicesN],IvcIndex> >::type
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operator()(const IndicesT (&indices)[IndicesN]) EIGEN_INDEXED_VIEW_METHOD_CONST
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197
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{
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198
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EIGEN_STATIC_ASSERT_VECTOR_ONLY(Derived)
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return IndexedView<EIGEN_INDEXED_VIEW_METHOD_CONST Derived,const IndicesT (&)[IndicesN],IvcIndex>
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(derived(), indices, IvcIndex(0));
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}
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#endif // EIGEN_HAS_STATIC_ARRAY_TEMPLATE
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#undef EIGEN_INDEXED_VIEW_METHOD_CONST
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#undef EIGEN_INDEXED_VIEW_METHOD_TYPE
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#ifndef EIGEN_INDEXED_VIEW_METHOD_2ND_PASS
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#define EIGEN_INDEXED_VIEW_METHOD_2ND_PASS
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#include "IndexedViewMethods.h"
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#undef EIGEN_INDEXED_VIEW_METHOD_2ND_PASS
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#endif
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#else // EIGEN_PARSED_BY_DOXYGEN
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/**
|
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* \returns a generic submatrix view defined by the rows and columns indexed \a rowIndices and \a colIndices respectively.
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*
|
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* Each parameter must either be:
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* - An integer indexing a single row or column
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* - Eigen::all indexing the full set of respective rows or columns in increasing order
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* - An ArithmeticSequence as returned by the Eigen::seq and Eigen::seqN functions
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* - Any %Eigen's vector/array of integers or expressions
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* - Plain C arrays: \c int[N]
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* - And more generally any type exposing the following two member functions:
|
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* \code
|
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* <integral type> operator[](<integral type>) const;
|
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* <integral type> size() const;
|
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|
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* \endcode
|
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|
+
* where \c <integral \c type> stands for any integer type compatible with Eigen::Index (i.e. \c std::ptrdiff_t).
|
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*
|
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+
* The last statement implies compatibility with \c std::vector, \c std::valarray, \c std::array, many of the Range-v3's ranges, etc.
|
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*
|
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* If the submatrix can be represented using a starting position \c (i,j) and positive sizes \c (rows,columns), then this
|
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+
* method will returns a Block object after extraction of the relevant information from the passed arguments. This is the case
|
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* when all arguments are either:
|
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+
* - An integer
|
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+
* - Eigen::all
|
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+
* - An ArithmeticSequence with compile-time increment strictly equal to 1, as returned by Eigen::seq(a,b), and Eigen::seqN(a,N).
|
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*
|
241
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+
* Otherwise a more general IndexedView<Derived,RowIndices',ColIndices'> object will be returned, after conversion of the inputs
|
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* to more suitable types \c RowIndices' and \c ColIndices'.
|
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+
*
|
244
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+
* For 1D vectors and arrays, you better use the operator()(const Indices&) overload, which behave the same way but taking a single parameter.
|
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+
*
|
246
|
+
* See also this <a href="https://stackoverflow.com/questions/46110917/eigen-replicate-items-along-one-dimension-without-useless-allocations">question</a> and its answer for an example of how to duplicate coefficients.
|
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*
|
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* \sa operator()(const Indices&), class Block, class IndexedView, DenseBase::block(Index,Index,Index,Index)
|
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+
*/
|
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template<typename RowIndices, typename ColIndices>
|
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IndexedView_or_Block
|
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+
operator()(const RowIndices& rowIndices, const ColIndices& colIndices);
|
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+
|
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/** This is an overload of operator()(const RowIndices&, const ColIndices&) for 1D vectors or arrays
|
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|
+
*
|
256
|
+
* \only_for_vectors
|
257
|
+
*/
|
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|
+
template<typename Indices>
|
259
|
+
IndexedView_or_VectorBlock
|
260
|
+
operator()(const Indices& indices);
|
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+
|
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+
#endif // EIGEN_PARSED_BY_DOXYGEN
|
@@ -39,10 +39,10 @@ cwiseProduct(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
|
|
39
39
|
*/
|
40
40
|
template<typename OtherDerived>
|
41
41
|
EIGEN_DEVICE_FUNC
|
42
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-
inline const CwiseBinaryOp<
|
42
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+
inline const CwiseBinaryOp<numext::equal_to<Scalar>, const Derived, const OtherDerived>
|
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|
cwiseEqual(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
|
44
44
|
{
|
45
|
-
return CwiseBinaryOp<
|
45
|
+
return CwiseBinaryOp<numext::equal_to<Scalar>, const Derived, const OtherDerived>(derived(), other.derived());
|
46
46
|
}
|
47
47
|
|
48
48
|
/** \returns an expression of the coefficient-wise != operator of *this and \a other
|
@@ -59,10 +59,10 @@ cwiseEqual(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
|
|
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*/
|
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|
template<typename OtherDerived>
|
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61
|
EIGEN_DEVICE_FUNC
|
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|
-
inline const CwiseBinaryOp<
|
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|
+
inline const CwiseBinaryOp<numext::not_equal_to<Scalar>, const Derived, const OtherDerived>
|
63
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|
cwiseNotEqual(const EIGEN_CURRENT_STORAGE_BASE_CLASS<OtherDerived> &other) const
|
64
64
|
{
|
65
|
-
return CwiseBinaryOp<
|
65
|
+
return CwiseBinaryOp<numext::not_equal_to<Scalar>, const Derived, const OtherDerived>(derived(), other.derived());
|
66
66
|
}
|
67
67
|
|
68
68
|
/** \returns an expression of the coefficient-wise min of *this and \a other
|
@@ -14,6 +14,7 @@
|
|
14
14
|
|
15
15
|
typedef CwiseUnaryOp<internal::scalar_abs_op<Scalar>, const Derived> CwiseAbsReturnType;
|
16
16
|
typedef CwiseUnaryOp<internal::scalar_abs2_op<Scalar>, const Derived> CwiseAbs2ReturnType;
|
17
|
+
typedef CwiseUnaryOp<internal::scalar_arg_op<Scalar>, const Derived> CwiseArgReturnType;
|
17
18
|
typedef CwiseUnaryOp<internal::scalar_sqrt_op<Scalar>, const Derived> CwiseSqrtReturnType;
|
18
19
|
typedef CwiseUnaryOp<internal::scalar_sign_op<Scalar>, const Derived> CwiseSignReturnType;
|
19
20
|
typedef CwiseUnaryOp<internal::scalar_inverse_op<Scalar>, const Derived> CwiseInverseReturnType;
|
@@ -82,4 +83,13 @@ EIGEN_DEVICE_FUNC
|
|
82
83
|
inline const CwiseInverseReturnType
|
83
84
|
cwiseInverse() const { return CwiseInverseReturnType(derived()); }
|
84
85
|
|
86
|
+
/// \returns an expression of the coefficient-wise phase angle of \c *this
|
87
|
+
///
|
88
|
+
/// Example: \include MatrixBase_cwiseArg.cpp
|
89
|
+
/// Output: \verbinclude MatrixBase_cwiseArg.out
|
90
|
+
///
|
91
|
+
EIGEN_DOC_UNARY_ADDONS(cwiseArg,arg)
|
85
92
|
|
93
|
+
EIGEN_DEVICE_FUNC
|
94
|
+
inline const CwiseArgReturnType
|
95
|
+
cwiseArg() const { return CwiseArgReturnType(derived()); }
|
@@ -0,0 +1,149 @@
|
|
1
|
+
|
2
|
+
#ifdef EIGEN_PARSED_BY_DOXYGEN
|
3
|
+
|
4
|
+
/// \returns an expression of \c *this with reshaped sizes.
|
5
|
+
///
|
6
|
+
/// \param nRows the number of rows in the reshaped expression, specified at either run-time or compile-time, or AutoSize
|
7
|
+
/// \param nCols the number of columns in the reshaped expression, specified at either run-time or compile-time, or AutoSize
|
8
|
+
/// \tparam Order specifies whether the coefficients should be processed in column-major-order (ColMajor), in row-major-order (RowMajor),
|
9
|
+
/// or follows the \em natural order of the nested expression (AutoOrder). The default is ColMajor.
|
10
|
+
/// \tparam NRowsType the type of the value handling the number of rows, typically Index.
|
11
|
+
/// \tparam NColsType the type of the value handling the number of columns, typically Index.
|
12
|
+
///
|
13
|
+
/// Dynamic size example: \include MatrixBase_reshaped_int_int.cpp
|
14
|
+
/// Output: \verbinclude MatrixBase_reshaped_int_int.out
|
15
|
+
///
|
16
|
+
/// The number of rows \a nRows and columns \a nCols can also be specified at compile-time by passing Eigen::fix<N>,
|
17
|
+
/// or Eigen::fix<N>(n) as arguments. In the later case, \c n plays the role of a runtime fallback value in case \c N equals Eigen::Dynamic.
|
18
|
+
/// Here is an example with a fixed number of rows and columns:
|
19
|
+
/// \include MatrixBase_reshaped_fixed.cpp
|
20
|
+
/// Output: \verbinclude MatrixBase_reshaped_fixed.out
|
21
|
+
///
|
22
|
+
/// Finally, one of the sizes parameter can be automatically deduced from the other one by passing AutoSize as in the following example:
|
23
|
+
/// \include MatrixBase_reshaped_auto.cpp
|
24
|
+
/// Output: \verbinclude MatrixBase_reshaped_auto.out
|
25
|
+
/// AutoSize does preserve compile-time sizes when possible, i.e., when the sizes of the input are known at compile time \b and
|
26
|
+
/// that the other size is passed at compile-time using Eigen::fix<N> as above.
|
27
|
+
///
|
28
|
+
/// \sa class Reshaped, fix, fix<N>(int)
|
29
|
+
///
|
30
|
+
template<int Order = ColMajor, typename NRowsType, typename NColsType>
|
31
|
+
EIGEN_DEVICE_FUNC
|
32
|
+
inline Reshaped<Derived,...>
|
33
|
+
reshaped(NRowsType nRows, NColsType nCols);
|
34
|
+
|
35
|
+
/// This is the const version of reshaped(NRowsType,NColsType).
|
36
|
+
template<int Order = ColMajor, typename NRowsType, typename NColsType>
|
37
|
+
EIGEN_DEVICE_FUNC
|
38
|
+
inline const Reshaped<const Derived,...>
|
39
|
+
reshaped(NRowsType nRows, NColsType nCols) const;
|
40
|
+
|
41
|
+
/// \returns an expression of \c *this with columns (or rows) stacked to a linear column vector
|
42
|
+
///
|
43
|
+
/// \tparam Order specifies whether the coefficients should be processed in column-major-order (ColMajor), in row-major-order (RowMajor),
|
44
|
+
/// or follows the \em natural order of the nested expression (AutoOrder). The default is ColMajor.
|
45
|
+
///
|
46
|
+
/// This overloads is essentially a shortcut for `A.reshaped<Order>(AutoSize,fix<1>)`.
|
47
|
+
///
|
48
|
+
/// - If `Order==ColMajor` (the default), then it returns a column-vector from the stacked columns of \c *this.
|
49
|
+
/// - If `Order==RowMajor`, then it returns a column-vector from the stacked rows of \c *this.
|
50
|
+
/// - If `Order==AutoOrder`, then it returns a column-vector with elements stacked following the storage order of \c *this.
|
51
|
+
/// This mode is the recommended one when the particular ordering of the element is not relevant.
|
52
|
+
///
|
53
|
+
/// Example:
|
54
|
+
/// \include MatrixBase_reshaped_to_vector.cpp
|
55
|
+
/// Output: \verbinclude MatrixBase_reshaped_to_vector.out
|
56
|
+
///
|
57
|
+
/// If you want more control, you can still fall back to reshaped(NRowsType,NColsType).
|
58
|
+
///
|
59
|
+
/// \sa reshaped(NRowsType,NColsType), class Reshaped
|
60
|
+
///
|
61
|
+
template<int Order = ColMajor>
|
62
|
+
EIGEN_DEVICE_FUNC
|
63
|
+
inline Reshaped<Derived,...>
|
64
|
+
reshaped();
|
65
|
+
|
66
|
+
/// This is the const version of reshaped().
|
67
|
+
template<int Order = ColMajor>
|
68
|
+
EIGEN_DEVICE_FUNC
|
69
|
+
inline const Reshaped<const Derived,...>
|
70
|
+
reshaped() const;
|
71
|
+
|
72
|
+
#else
|
73
|
+
|
74
|
+
// This file is automatically included twice to generate const and non-const versions
|
75
|
+
|
76
|
+
#ifndef EIGEN_RESHAPED_METHOD_2ND_PASS
|
77
|
+
#define EIGEN_RESHAPED_METHOD_CONST const
|
78
|
+
#else
|
79
|
+
#define EIGEN_RESHAPED_METHOD_CONST
|
80
|
+
#endif
|
81
|
+
|
82
|
+
#ifndef EIGEN_RESHAPED_METHOD_2ND_PASS
|
83
|
+
|
84
|
+
// This part is included once
|
85
|
+
|
86
|
+
#endif
|
87
|
+
|
88
|
+
template<typename NRowsType, typename NColsType>
|
89
|
+
EIGEN_DEVICE_FUNC
|
90
|
+
inline Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,
|
91
|
+
internal::get_compiletime_reshape_size<NRowsType,NColsType,SizeAtCompileTime>::value,
|
92
|
+
internal::get_compiletime_reshape_size<NColsType,NRowsType,SizeAtCompileTime>::value>
|
93
|
+
reshaped(NRowsType nRows, NColsType nCols) EIGEN_RESHAPED_METHOD_CONST
|
94
|
+
{
|
95
|
+
return Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,
|
96
|
+
internal::get_compiletime_reshape_size<NRowsType,NColsType,SizeAtCompileTime>::value,
|
97
|
+
internal::get_compiletime_reshape_size<NColsType,NRowsType,SizeAtCompileTime>::value>
|
98
|
+
(derived(),
|
99
|
+
internal::get_runtime_reshape_size(nRows,internal::get_runtime_value(nCols),size()),
|
100
|
+
internal::get_runtime_reshape_size(nCols,internal::get_runtime_value(nRows),size()));
|
101
|
+
}
|
102
|
+
|
103
|
+
template<int Order, typename NRowsType, typename NColsType>
|
104
|
+
EIGEN_DEVICE_FUNC
|
105
|
+
inline Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,
|
106
|
+
internal::get_compiletime_reshape_size<NRowsType,NColsType,SizeAtCompileTime>::value,
|
107
|
+
internal::get_compiletime_reshape_size<NColsType,NRowsType,SizeAtCompileTime>::value,
|
108
|
+
internal::get_compiletime_reshape_order<Flags,Order>::value>
|
109
|
+
reshaped(NRowsType nRows, NColsType nCols) EIGEN_RESHAPED_METHOD_CONST
|
110
|
+
{
|
111
|
+
return Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,
|
112
|
+
internal::get_compiletime_reshape_size<NRowsType,NColsType,SizeAtCompileTime>::value,
|
113
|
+
internal::get_compiletime_reshape_size<NColsType,NRowsType,SizeAtCompileTime>::value,
|
114
|
+
internal::get_compiletime_reshape_order<Flags,Order>::value>
|
115
|
+
(derived(),
|
116
|
+
internal::get_runtime_reshape_size(nRows,internal::get_runtime_value(nCols),size()),
|
117
|
+
internal::get_runtime_reshape_size(nCols,internal::get_runtime_value(nRows),size()));
|
118
|
+
}
|
119
|
+
|
120
|
+
// Views as linear vectors
|
121
|
+
|
122
|
+
EIGEN_DEVICE_FUNC
|
123
|
+
inline Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,SizeAtCompileTime,1>
|
124
|
+
reshaped() EIGEN_RESHAPED_METHOD_CONST
|
125
|
+
{
|
126
|
+
return Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived,SizeAtCompileTime,1>(derived(),size(),1);
|
127
|
+
}
|
128
|
+
|
129
|
+
template<int Order>
|
130
|
+
EIGEN_DEVICE_FUNC
|
131
|
+
inline Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived, SizeAtCompileTime, 1,
|
132
|
+
internal::get_compiletime_reshape_order<Flags,Order>::value>
|
133
|
+
reshaped() EIGEN_RESHAPED_METHOD_CONST
|
134
|
+
{
|
135
|
+
EIGEN_STATIC_ASSERT(Order==RowMajor || Order==ColMajor || Order==AutoOrder, INVALID_TEMPLATE_PARAMETER);
|
136
|
+
return Reshaped<EIGEN_RESHAPED_METHOD_CONST Derived, SizeAtCompileTime, 1,
|
137
|
+
internal::get_compiletime_reshape_order<Flags,Order>::value>
|
138
|
+
(derived(), size(), 1);
|
139
|
+
}
|
140
|
+
|
141
|
+
#undef EIGEN_RESHAPED_METHOD_CONST
|
142
|
+
|
143
|
+
#ifndef EIGEN_RESHAPED_METHOD_2ND_PASS
|
144
|
+
#define EIGEN_RESHAPED_METHOD_2ND_PASS
|
145
|
+
#include "ReshapedMethods.h"
|
146
|
+
#undef EIGEN_RESHAPED_METHOD_2ND_PASS
|
147
|
+
#endif
|
148
|
+
|
149
|
+
#endif // EIGEN_PARSED_BY_DOXYGEN
|
data/vendor/eigen/README.md
CHANGED
@@ -1,3 +1,5 @@
|
|
1
1
|
**Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.**
|
2
2
|
|
3
3
|
For more information go to http://eigen.tuxfamily.org/.
|
4
|
+
|
5
|
+
For ***pull request***, ***bug reports***, and ***feature requests***, go to https://gitlab.com/libeigen/eigen.
|
@@ -36,7 +36,7 @@ For instance:
|
|
36
36
|
|
37
37
|
You can also select a given set of actions defining the environment variable BTL_CONFIG this way:
|
38
38
|
BTL_CONFIG="-a action1{:action2}*" ctest -V
|
39
|
-
An
|
39
|
+
An example:
|
40
40
|
BTL_CONFIG="-a axpy:vector_matrix:trisolve:ata" ctest -V -R eigen2
|
41
41
|
|
42
42
|
Finally, if bench results already exist (the bench*.dat files) then they merges by keeping the best for each matrix size. If you want to overwrite the previous ones you can simply add the "--overwrite" option:
|
@@ -11,11 +11,10 @@ nvcc tensor_benchmarks_gpu.cu benchmark_main.cc -I ../../ -std=c++11 -O2 -DNDEBU
|
|
11
11
|
We also provide a version of the generic GPU tensor benchmarks that uses half floats (aka fp16) instead of regular floats. To compile these benchmarks, simply call the command line below. You'll need a recent GPU that supports compute capability 5.3 or higher to run them and nvcc 7.5 or higher to compile the code.
|
12
12
|
nvcc tensor_benchmarks_fp16_gpu.cu benchmark_main.cc -I ../../ -std=c++11 -O2 -DNDEBUG -use_fast_math -ftz=true -arch compute_53 -o benchmarks_fp16_gpu
|
13
13
|
|
14
|
-
|
15
|
-
|
14
|
+
To compile and run the benchmark for SYCL, using ComputeCpp, simply run the
|
15
|
+
following commands:
|
16
|
+
1. export COMPUTECPP_PACKAGE_ROOT_DIR={PATH TO COMPUTECPP ROOT DIRECTORY}
|
17
|
+
2. bash eigen_sycl_bench.sh
|
16
18
|
|
17
|
-
|
18
|
-
|
19
|
-
{ComputeCpp_ROOT}/bin/compute++ -I ../../ -I {ComputeCpp_ROOT}/include/ -std=c++11 -mllvm -inline-threshold=1000 -Wno-ignored-attributes -sycl -intelspirmetadata -emit-llvm -no-serial-memop -sycl-compress-name -DBUILD_PLATFORM_SPIR -DNDBUG -O3 -c tensor_benchmarks_sycl.cc
|
20
|
-
2. The host compilation pass that generates the final host binary.
|
21
|
-
clang++-3.7 -include tensor_benchmarks_sycl.sycl benchmark_main.cc tensor_benchmarks_sycl.cc -pthread -I ../../ -I {ComputeCpp_ROOT}/include/ -L {ComputeCpp_ROOT}/lib/ -lComputeCpp -lOpenCL -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11 -o tensor_benchmark_sycl
|
19
|
+
Last but not least, we also provide a suite of benchmarks to measure the scalability of the contraction code on CPU. To compile these benchmarks, call
|
20
|
+
g++ contraction_benchmarks_cpu.cc benchmark_main.cc -I ../../ -std=c++11 -O3 -DNDEBUG -pthread -mavx -o benchmarks_cpu
|
@@ -0,0 +1,56 @@
|
|
1
|
+
## Eigen CI infrastructure
|
2
|
+
|
3
|
+
Eigen's CI infrastructure uses two stages: A `build` stage to build the unit-test
|
4
|
+
suite and a `test` stage to run the unit-tests.
|
5
|
+
|
6
|
+
### Build Stage
|
7
|
+
|
8
|
+
The build stage consists of the following jobs:
|
9
|
+
|
10
|
+
| Job Name | Arch | OS | Compiler | C++11 |
|
11
|
+
|------------------------------------------|-----------|----------------|------------|---------|
|
12
|
+
| `build:x86-64:linux:gcc-4.8:cxx11-off` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `Off` |
|
13
|
+
| `build:x86-64:linux:gcc-4.8:cxx11-on` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `On` |
|
14
|
+
| `build:x86-64:linux:gcc-9:cxx11-off` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `Off` |
|
15
|
+
| `build:x86-64:linux:gcc-9:cxx11-on` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `On` |
|
16
|
+
| `build:x86-64:linux:gcc-10:cxx11-off` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `Off` |
|
17
|
+
| `build:x86-64:linux:gcc-10:cxx11-on` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `On` |
|
18
|
+
| `build:x86-64:linux:clang-10:cxx11-off` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `Off` |
|
19
|
+
| `build:x86-64:linux:clang-10:cxx11-on` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `On` |
|
20
|
+
| `build:aarch64:linux:gcc-10:cxx11-off` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `Off` |
|
21
|
+
| `build:aarch64:linux:gcc-10:cxx11-on` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `On` |
|
22
|
+
| `build:aarch64:linux:clang-10:cxx11-off` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `Off` |
|
23
|
+
| `build:aarch64:linux:clang-10:cxx11-on` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `On` |
|
24
|
+
|
25
|
+
### Test stage
|
26
|
+
|
27
|
+
In principle every build-job has a corresponding test-job, however testing supported and unsupported modules is divided into separate jobs. The test jobs in detail:
|
28
|
+
|
29
|
+
### Job dependecies
|
30
|
+
|
31
|
+
| Job Name | Arch | OS | Compiler | C++11 | Module
|
32
|
+
|-----------------------------------------------------|-----------|----------------|------------|---------|--------
|
33
|
+
| `test:x86-64:linux:gcc-4.8:cxx11-off:official` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `Off` | `Official`
|
34
|
+
| `test:x86-64:linux:gcc-4.8:cxx11-off:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `Off` | `Unsupported`
|
35
|
+
| `test:x86-64:linux:gcc-4.8:cxx11-on:official` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `On` | `Official`
|
36
|
+
| `test:x86-64:linux:gcc-4.8:cxx11-on:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-4.8` | `On` | `Unsupported`
|
37
|
+
| `test:x86-64:linux:gcc-9:cxx11-off:official` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `Off` | `Official`
|
38
|
+
| `test:x86-64:linux:gcc-9:cxx11-off:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `Off` | `Unsupported`
|
39
|
+
| `test:x86-64:linux:gcc-9:cxx11-on:official` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `On` | `Official`
|
40
|
+
| `test:x86-64:linux:gcc-9:cxx11-on:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-9` | `On` | `Unsupported`
|
41
|
+
| `test:x86-64:linux:gcc-10:cxx11-off:official` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `Off` | `Official`
|
42
|
+
| `test:x86-64:linux:gcc-10:cxx11-off:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `Off` | `Unsupported`
|
43
|
+
| `test:x86-64:linux:gcc-10:cxx11-on:official` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `On` | `Official`
|
44
|
+
| `test:x86-64:linux:gcc-10:cxx11-on:unsupported` | `x86-64` | `Ubuntu 18.04` | `GCC-10` | `On` | `Unsupported`
|
45
|
+
| `test:x86-64:linux:clang-10:cxx11-off:official` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `Off` | `Official`
|
46
|
+
| `test:x86-64:linux:clang-10:cxx11-off:unsupported` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `Off` | `Unsupported`
|
47
|
+
| `test:x86-64:linux:clang-10:cxx11-on:official` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `On` | `Official`
|
48
|
+
| `test:x86-64:linux:clang-10:cxx11-on:unsupported` | `x86-64` | `Ubuntu 18.04` | `Clang-10` | `On` | `Unsupported`
|
49
|
+
| `test:aarch64:linux:gcc-10:cxx11-off:official` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `Off` | `Official`
|
50
|
+
| `test:aarch64:linux:gcc-10:cxx11-off:unsupported` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `Off` | `Unsupported`
|
51
|
+
| `test:aarch64:linux:gcc-10:cxx11-on:official` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `On` | `Official`
|
52
|
+
| `test:aarch64:linux:gcc-10:cxx11-on:unsupported` | `AArch64` | `Ubuntu 18.04` | `GCC-10` | `On` | `Unsupported`
|
53
|
+
| `test:aarch64:linux:clang-10:cxx11-off:official` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `Off` | `Official`
|
54
|
+
| `test:aarch64:linux:clang-10:cxx11-off:unsupported` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `Off` | `Unsupported`
|
55
|
+
| `test:aarch64:linux:clang-10:cxx11-on:official` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `On` | `Official`
|
56
|
+
| `test:aarch64:linux:clang-10:cxx11-on:unsupported` | `AArch64` | `Ubuntu 18.04` | `Clang-10` | `On` | `Unsupported`
|