tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -2,10 +2,10 @@
2
2
  * @file Core.h
3
3
  * @author bab2min (bab2min@gmail.com)
4
4
  * @brief
5
- * @version 0.3.0
6
- * @date 2020-10-07
5
+ * @version 0.3.3
6
+ * @date 2021-03-31
7
7
  *
8
- * @copyright Copyright (c) 2020
8
+ * @copyright Copyright (c) 2020-2021
9
9
  *
10
10
  */
11
11
 
@@ -13,15 +13,15 @@
13
13
  #ifndef EIGENRAND_CORE_H
14
14
  #define EIGENRAND_CORE_H
15
15
 
16
- #include <EigenRand/RandUtils.h>
16
+ #include "RandUtils.h"
17
17
 
18
- #include <EigenRand/Dists/Basic.h>
19
- #include <EigenRand/Dists/Discrete.h>
20
- #include <EigenRand/Dists/NormalExp.h>
21
- #include <EigenRand/Dists/GammaPoisson.h>
18
+ #include "Dists/Basic.h"
19
+ #include "Dists/Discrete.h"
20
+ #include "Dists/NormalExp.h"
21
+ #include "Dists/GammaPoisson.h"
22
22
 
23
- #include <EigenRand/MvDists/MvNormal.h>
24
- #include <EigenRand/MvDists/Multinomial.h>
23
+ #include "MvDists/MvNormal.h"
24
+ #include "MvDists/Multinomial.h"
25
25
 
26
26
  namespace Eigen
27
27
  {
@@ -2,10 +2,10 @@
2
2
  * @file Basic.h
3
3
  * @author bab2min (bab2min@gmail.com)
4
4
  * @brief
5
- * @version 0.3.0
6
- * @date 2020-10-07
5
+ * @version 0.3.3
6
+ * @date 2021-03-31
7
7
  *
8
- * @copyright Copyright (c) 2020
8
+ * @copyright Copyright (c) 2020-2021
9
9
  *
10
10
  */
11
11
 
@@ -238,6 +238,31 @@ namespace Eigen
238
238
 
239
239
  using OptCacheStore = CacheStore<EIGEN_MAX_ALIGN_BYTES>;
240
240
 
241
+ template<typename _Scalar>
242
+ struct ExtractFirstUint;
243
+
244
+ template<>
245
+ struct ExtractFirstUint<float>
246
+ {
247
+ template<typename Packet>
248
+ auto operator()(Packet v) -> decltype(Eigen::internal::pfirst(v))
249
+ {
250
+ return Eigen::internal::pfirst(v);
251
+ }
252
+ };
253
+
254
+ template<>
255
+ struct ExtractFirstUint<double>
256
+ {
257
+ template<typename Packet>
258
+ auto operator()(Packet v) -> uint64_t
259
+ {
260
+ uint64_t arr[sizeof(Packet) / 8];
261
+ Eigen::internal::pstoreu((Packet*)arr, v);
262
+ return arr[0];
263
+ }
264
+ };
265
+
241
266
  /**
242
267
  * @brief Generator of random bits for integral scalars
243
268
  *
@@ -296,13 +321,52 @@ namespace Eigen
296
321
  }
297
322
  };
298
323
 
324
+ /**
325
+ * @brief Generator of reals in a range `[a, b]`
326
+ *
327
+ * @tparam _Scalar any real type
328
+ */
329
+ template<typename _Scalar>
330
+ class Balanced2Gen : public GenBase<Balanced2Gen<_Scalar>, _Scalar>
331
+ {
332
+ static_assert(std::is_floating_point<_Scalar>::value, "balanced needs floating point types.");
333
+ _Scalar slope = 2, bias = -1;
334
+ public:
335
+ using Scalar = _Scalar;
336
+
337
+ /**
338
+ * @brief Construct a new balanced generator
339
+ *
340
+ * @param _a,_b left and right boundary
341
+ */
342
+ Balanced2Gen(_Scalar _a = -1, _Scalar _b = 1)
343
+ : slope{ _b - _a }, bias{ _a }
344
+ {
345
+ }
346
+
347
+ template<typename Rng>
348
+ EIGEN_STRONG_INLINE const _Scalar operator() (Rng&& rng)
349
+ {
350
+ using namespace Eigen::internal;
351
+ return ((_Scalar)((int32_t)pfirst(std::forward<Rng>(rng)()) & 0x7FFFFFFF) / 0x7FFFFFFF) * slope + bias;
352
+ }
353
+
354
+ template<typename Packet, typename Rng>
355
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Packet packetOp(Rng&& rng)
356
+ {
357
+ using namespace Eigen::internal;
358
+ using RUtils = RandUtils<Packet, Rng>;
359
+ return RUtils{}.balanced(std::forward<Rng>(rng), slope, bias);
360
+ }
361
+ };
362
+
299
363
  /**
300
364
  * @brief Generator of reals in a range `[0, 1)`
301
365
  *
302
366
  * @tparam _Scalar any real type
303
367
  */
304
368
  template<typename _Scalar>
305
- class UniformRealGen : public GenBase<UniformRealGen<_Scalar>, _Scalar>
369
+ class StdUniformRealGen : public GenBase<StdUniformRealGen<_Scalar>, _Scalar>
306
370
  {
307
371
  static_assert(std::is_floating_point<_Scalar>::value, "uniformReal needs floating point types.");
308
372
 
@@ -313,14 +377,14 @@ namespace Eigen
313
377
  EIGEN_STRONG_INLINE const _Scalar operator() (Rng&& rng)
314
378
  {
315
379
  using namespace Eigen::internal;
316
- return bit_scalar<_Scalar>{}.to_ur(pfirst(std::forward<Rng>(rng)()));
380
+ return BitScalar<_Scalar>{}.to_ur(ExtractFirstUint<_Scalar>{}(std::forward<Rng>(rng)()));
317
381
  }
318
382
 
319
383
  template<typename Rng>
320
384
  EIGEN_STRONG_INLINE const _Scalar nzur_scalar(Rng&& rng)
321
385
  {
322
386
  using namespace Eigen::internal;
323
- return bit_scalar<_Scalar>{}.to_nzur(pfirst(std::forward<Rng>(rng)()));
387
+ return BitScalar<_Scalar>{}.to_nzur(ExtractFirstUint<_Scalar>{}(std::forward<Rng>(rng)()));
324
388
  }
325
389
 
326
390
  template<typename Packet, typename Rng>
@@ -332,6 +396,49 @@ namespace Eigen
332
396
  }
333
397
  };
334
398
 
399
+ /**
400
+ * @brief Generator of reals in a range `[a, b)`
401
+ *
402
+ * @tparam _Scalar any real type
403
+ */
404
+ template<typename _Scalar>
405
+ class UniformRealGen : public GenBase<UniformRealGen<_Scalar>, _Scalar>
406
+ {
407
+ static_assert(std::is_floating_point<_Scalar>::value, "uniformReal needs floating point types.");
408
+ _Scalar bias, slope;
409
+
410
+ public:
411
+ using Scalar = _Scalar;
412
+
413
+ UniformRealGen(_Scalar _min = 0, _Scalar _max = 1)
414
+ : bias{ _min }, slope{ _max - _min }
415
+ {
416
+ }
417
+
418
+ UniformRealGen(const UniformRealGen&) = default;
419
+ UniformRealGen(UniformRealGen&&) = default;
420
+
421
+ UniformRealGen& operator=(const UniformRealGen&) = default;
422
+ UniformRealGen& operator=(UniformRealGen&&) = default;
423
+
424
+ template<typename Rng>
425
+ EIGEN_STRONG_INLINE const _Scalar operator() (Rng&& rng)
426
+ {
427
+ using namespace Eigen::internal;
428
+ return bias + BitScalar<_Scalar>{}.to_ur(pfirst(std::forward<Rng>(rng)())) * slope;
429
+ }
430
+
431
+ template<typename Packet, typename Rng>
432
+ EIGEN_STRONG_INLINE const Packet packetOp(Rng&& rng)
433
+ {
434
+ using namespace Eigen::internal;
435
+ using RUtils = RandUtils<Packet, Rng>;
436
+ return padd(pmul(
437
+ RUtils{}.uniform_real(std::forward<Rng>(rng)), pset1<Packet>(slope)
438
+ ), pset1<Packet>(bias));
439
+ }
440
+ };
441
+
335
442
 
336
443
  /**
337
444
  * @brief Generator of Bernoulli distribution
@@ -468,7 +575,53 @@ namespace Eigen
468
575
  }
469
576
 
470
577
  template<typename Derived, typename Urng>
471
- using UniformRealType = CwiseNullaryOp<internal::scalar_rng_adaptor<UniformRealGen<typename Derived::Scalar>, typename Derived::Scalar, Urng, true>, const Derived>;
578
+ using Balanced2Type = CwiseNullaryOp<internal::scalar_rng_adaptor<Balanced2Gen<typename Derived::Scalar>, typename Derived::Scalar, Urng, true>, const Derived>;
579
+
580
+ /**
581
+ * @brief generates reals in a range `[a, b]`
582
+ *
583
+ * @tparam Derived a type of Eigen::DenseBase
584
+ * @tparam Urng
585
+ * @param rows the number of rows being generated
586
+ * @param cols the number of columns being generated
587
+ * @param urng c++11-style random number generator
588
+ * @param a,b left and right boundary
589
+ * @return a random matrix expression with a shape (`rows`, `cols`)
590
+ *
591
+ * @see Eigen::Rand::BalancedGen
592
+ */
593
+ template<typename Derived, typename Urng>
594
+ inline const Balanced2Type<Derived, Urng>
595
+ balanced(Index rows, Index cols, Urng&& urng, typename Derived::Scalar a, typename Derived::Scalar b)
596
+ {
597
+ return {
598
+ rows, cols, { std::forward<Urng>(urng), Balanced2Gen<typename Derived::Scalar>{a, b} }
599
+ };
600
+ }
601
+
602
+ /**
603
+ * @brief generates reals in a range `[a, b]`
604
+ *
605
+ * @tparam Derived
606
+ * @tparam Urng
607
+ * @param o an instance of any type of Eigen::DenseBase
608
+ * @param urng c++11-style random number generator
609
+ * @param a,b left and right boundary
610
+ * @return a random matrix expression of the same shape as `o`
611
+ *
612
+ * @see Eigen::Rand::BalancedGen
613
+ */
614
+ template<typename Derived, typename Urng>
615
+ inline const Balanced2Type<Derived, Urng>
616
+ balancedLike(const Derived& o, Urng&& urng, typename Derived::Scalar a, typename Derived::Scalar b)
617
+ {
618
+ return {
619
+ o.rows(), o.cols(), { std::forward<Urng>(urng), Balanced2Gen<typename Derived::Scalar>{a, b} }
620
+ };
621
+ }
622
+
623
+ template<typename Derived, typename Urng>
624
+ using StdUniformRealType = CwiseNullaryOp<internal::scalar_rng_adaptor<StdUniformRealGen<typename Derived::Scalar>, typename Derived::Scalar, Urng, true>, const Derived>;
472
625
 
473
626
  /**
474
627
  * @brief generates reals in a range `[0, 1)`
@@ -483,7 +636,7 @@ namespace Eigen
483
636
  * @see Eigen::Rand::UniformRealGen
484
637
  */
485
638
  template<typename Derived, typename Urng>
486
- inline const UniformRealType<Derived, Urng>
639
+ inline const StdUniformRealType<Derived, Urng>
487
640
  uniformReal(Index rows, Index cols, Urng&& urng)
488
641
  {
489
642
  return {
@@ -503,7 +656,7 @@ namespace Eigen
503
656
  * @see Eigen::Rand::UniformRealGen
504
657
  */
505
658
  template<typename Derived, typename Urng>
506
- inline const UniformRealType<Derived, Urng>
659
+ inline const StdUniformRealType<Derived, Urng>
507
660
  uniformRealLike(Derived& o, Urng&& urng)
508
661
  {
509
662
  return {
@@ -511,6 +664,52 @@ namespace Eigen
511
664
  };
512
665
  }
513
666
 
667
+ template<typename Derived, typename Urng>
668
+ using UniformRealType = CwiseNullaryOp<internal::scalar_rng_adaptor<UniformRealGen<typename Derived::Scalar>, typename Derived::Scalar, Urng, true>, const Derived>;
669
+
670
+ /**
671
+ * @brief generates reals in a range `[min, max)`
672
+ *
673
+ * @tparam Derived a type of Eigen::DenseBase
674
+ * @tparam Urng
675
+ * @param rows the number of rows being generated
676
+ * @param cols the number of columns being generated
677
+ * @param urng c++11-style random number generator
678
+ * @param min, max the range of reals being generated
679
+ * @return a random matrix expression with a shape (`rows`, `cols`)
680
+ *
681
+ * @see Eigen::Rand::UniformRealGen
682
+ */
683
+ template<typename Derived, typename Urng>
684
+ inline const UniformRealType<Derived, Urng>
685
+ uniformReal(Index rows, Index cols, Urng&& urng, typename Derived::Scalar min, typename Derived::Scalar max)
686
+ {
687
+ return {
688
+ rows, cols, { std::forward<Urng>(urng), UniformRealGen<typename Derived::Scalar>{ min, max } }
689
+ };
690
+ }
691
+
692
+ /**
693
+ * @brief generates reals in a range `[min, max)`
694
+ *
695
+ * @tparam Derived
696
+ * @tparam Urng
697
+ * @param o an instance of any type of Eigen::DenseBase
698
+ * @param urng c++11-style random number generator
699
+ * @param min, max the range of reals being generated
700
+ * @return a random matrix expression of the same shape as `o`
701
+ *
702
+ * @see Eigen::Rand::UniformRealGen
703
+ */
704
+ template<typename Derived, typename Urng>
705
+ inline const UniformRealType<Derived, Urng>
706
+ uniformRealLike(Derived& o, Urng&& urng, typename Derived::Scalar min, typename Derived::Scalar max)
707
+ {
708
+ return {
709
+ o.rows(), o.cols(), { std::forward<Urng>(urng), UniformRealGen<typename Derived::Scalar>{ min, max } }
710
+ };
711
+ }
712
+
514
713
  template<typename Derived, typename Urng>
515
714
  using BernoulliType = CwiseNullaryOp<internal::scalar_rng_adaptor<BernoulliGen<typename Derived::Scalar>, typename Derived::Scalar, Urng, true>, const Derived>;
516
715
 
@@ -2,10 +2,10 @@
2
2
  * @file Discrete.h
3
3
  * @author bab2min (bab2min@gmail.com)
4
4
  * @brief
5
- * @version 0.3.0
6
- * @date 2020-10-07
5
+ * @version 0.3.3
6
+ * @date 2021-03-31
7
7
  *
8
- * @copyright Copyright (c) 2020
8
+ * @copyright Copyright (c) 2020-2021
9
9
  *
10
10
  */
11
11
 
@@ -49,11 +49,11 @@ namespace Eigen
49
49
  bitmask = o.bitmask;
50
50
  if (msize)
51
51
  {
52
- arr = std::unique_ptr<_Precision[]>(new _Precision[1 << bitsize]);
53
- alias = std::unique_ptr<_Size[]>(new _Size[1 << bitsize]);
52
+ arr = std::unique_ptr<_Precision[]>(new _Precision[(size_t)1 << bitsize]);
53
+ alias = std::unique_ptr<_Size[]>(new _Size[(size_t)1 << bitsize]);
54
54
 
55
- std::copy(o.arr.get(), o.arr.get() + (1 << bitsize), arr.get());
56
- std::copy(o.alias.get(), o.alias.get() + (1 << bitsize), alias.get());
55
+ std::copy(o.arr.get(), o.arr.get() + ((size_t)1 << bitsize), arr.get());
56
+ std::copy(o.alias.get(), o.alias.get() + ((size_t)1 << bitsize), alias.get());
57
57
  }
58
58
  return *this;
59
59
  }
@@ -125,7 +125,7 @@ namespace Eigen
125
125
  {
126
126
  arr[under] = (_Precision)f[under];
127
127
  }
128
- alias[under] = over;
128
+ alias[under] = (_Size)over;
129
129
  f[over] += f[under] - 1;
130
130
  if (f[over] >= 1 || mm <= over)
131
131
  {
@@ -152,7 +152,7 @@ namespace Eigen
152
152
  {
153
153
  arr[over] = 1;
154
154
  }
155
- alias[over] = over;
155
+ alias[over] = (_Size)over;
156
156
  }
157
157
  }
158
158
 
@@ -166,7 +166,7 @@ namespace Eigen
166
166
  {
167
167
  arr[under] = 1;
168
168
  }
169
- alias[under] = under;
169
+ alias[under] = (_Size)under;
170
170
  for (under = mm; under < msize; ++under)
171
171
  {
172
172
  if (f[under] < 1)
@@ -179,7 +179,7 @@ namespace Eigen
179
179
  {
180
180
  arr[under] = 1;
181
181
  }
182
- alias[under] = under;
182
+ alias[under] = (_Size)under;
183
183
  }
184
184
  }
185
185
  }
@@ -260,8 +260,9 @@ namespace Eigen
260
260
  else
261
261
  {
262
262
  size_t bitcnt = bitsize;
263
- while (1)
263
+ for (int _i = 0; ; ++_i)
264
264
  {
265
+ EIGENRAND_CHECK_INFINITY_LOOP();
265
266
  _Scalar cands = (_Scalar)(rx & bitmask);
266
267
  if (cands <= pdiff) return cands;
267
268
  if (bitcnt + bitsize < 32)
@@ -293,8 +294,9 @@ namespace Eigen
293
294
  auto& cm = Rand::detail::CompressMask<sizeof(Packet)>::get_inst();
294
295
  auto plen = pset1<Packet>(pdiff + 1);
295
296
  size_t bitcnt = bitsize;
296
- while (1)
297
+ for (int _i = 0; ; ++_i)
297
298
  {
299
+ EIGENRAND_CHECK_INFINITY_LOOP();
298
300
  // accept cands that only < plen
299
301
  auto cands = pand(rx, pbitmask);
300
302
  bool full = false;
@@ -304,7 +306,7 @@ namespace Eigen
304
306
 
305
307
  if (bitcnt + bitsize < 32)
306
308
  {
307
- rx = psrl(rx, bitsize);
309
+ rx = psrl<-1>(rx, bitsize);
308
310
  bitcnt += bitsize;
309
311
  }
310
312
  else
@@ -417,7 +419,7 @@ namespace Eigen
417
419
  auto rx = randbits(std::forward<Rng>(rng));
418
420
  auto albit = rx & alias_table.get_bitmask();
419
421
  uint32_t alx = (uint32_t)(rx >> (sizeof(rx) * 8 - 31));
420
- if (alx < alias_table.get_prob()[albit]) return albit;
422
+ if (alx < alias_table.get_prob()[albit]) return (_Scalar)albit;
421
423
  return alias_table.get_alias()[albit];
422
424
  }
423
425
  }
@@ -451,7 +453,7 @@ namespace Eigen
451
453
  {
452
454
  auto rx = randbits.template packetOp<PacketType>(std::forward<Rng>(rng));
453
455
  auto albit = pand(rx, pset1<PacketType>(alias_table.get_bitmask()));
454
- auto c = pcmplt(psrl(rx, 1), pgather(alias_table.get_prob(), albit));
456
+ auto c = pcmplt(psrl<1>(rx), pgather(alias_table.get_prob(), albit));
455
457
  ret = pblendv(c, albit, pgather(alias_table.get_alias(), albit));
456
458
  }
457
459
 
@@ -673,6 +675,8 @@ namespace Eigen
673
675
  }
674
676
  }
675
677
 
678
+ #ifdef EIGEN_VECTORIZE_NEON
679
+ #else
676
680
  template<typename Packet, typename Rng>
677
681
  EIGEN_STRONG_INLINE const Packet packetOp(Rng&& rng)
678
682
  {
@@ -681,7 +685,7 @@ namespace Eigen
681
685
  if (!cdf.empty())
682
686
  {
683
687
  auto ret = pset1<Packet>(cdf.size());
684
- #ifdef EIGEN_VECTORIZE_AVX
688
+ #ifdef EIGEN_VECTORIZE_AVX
685
689
  auto rx = ur.template packetOp<Packet4d>(std::forward<Rng>(rng));
686
690
  for (auto& p : cdf)
687
691
  {
@@ -689,7 +693,7 @@ namespace Eigen
689
693
  auto r = combine_low32(c);
690
694
  ret = padd(ret, r);
691
695
  }
692
- #else
696
+ #else
693
697
  auto rx1 = ur.template packetOp<DPacket>(rng),
694
698
  rx2 = ur.template packetOp<DPacket>(rng);
695
699
  for (auto& p : cdf)
@@ -697,25 +701,26 @@ namespace Eigen
697
701
  auto pp = pset1<decltype(rx1)>(p);
698
702
  ret = padd(ret, combine_low32(reinterpret_to_int(pcmplt(rx1, pp)), reinterpret_to_int(pcmplt(rx2, pp))));
699
703
  }
700
- #endif
704
+ #endif
701
705
  return ret;
702
706
  }
703
707
  else
704
708
  {
705
- #ifdef EIGEN_VECTORIZE_AVX
709
+ #ifdef EIGEN_VECTORIZE_AVX
706
710
  using RUtils = RawbitsMaker<Packet, Rng>;
707
711
  auto albit = pand(RUtils{}.rawbits(rng), pset1<Packet>(alias_table.get_bitmask()));
708
712
  auto c = reinterpret_to_int(pcmplt(ur.template packetOp<Packet4d>(rng), pgather(alias_table.get_prob(), _mm256_castsi128_si256(albit))));
709
713
  return pblendv(combine_low32(c), albit, pgather(alias_table.get_alias(), albit));
710
- #else
714
+ #else
711
715
  using RUtils = RawbitsMaker<Packet, Rng>;
712
716
  auto albit = pand(RUtils{}.rawbits(rng), pset1<Packet>(alias_table.get_bitmask()));
713
717
  auto c1 = reinterpret_to_int(pcmplt(ur.template packetOp<DPacket>(rng), pgather(alias_table.get_prob(), albit)));
714
718
  auto c2 = reinterpret_to_int(pcmplt(ur.template packetOp<DPacket>(rng), pgather(alias_table.get_prob(), albit, true)));
715
719
  return pblendv(combine_low32(c1, c2), albit, pgather(alias_table.get_alias(), albit));
716
- #endif
720
+ #endif
717
721
  }
718
722
  }
723
+ #endif
719
724
  };
720
725
 
721
726
  template<typename> class BinomialGen;
@@ -777,8 +782,9 @@ namespace Eigen
777
782
  {
778
783
  _Scalar res;
779
784
  double yx;
780
- while (1)
785
+ for (int _i = 0; ; ++_i)
781
786
  {
787
+ EIGENRAND_CHECK_INFINITY_LOOP();
782
788
  yx = std::tan(constant::pi * ur(rng));
783
789
  res = (_Scalar)(sqrt_tmean * yx + mean);
784
790
  if (res >= 0 && ur(rng) <= 0.9 * (1.0 + yx * yx)
@@ -800,8 +806,9 @@ namespace Eigen
800
806
  {
801
807
  Packet res = pset1<Packet>(0);
802
808
  PacketType val = pset1<PacketType>(1), pne_mean = pset1<PacketType>(ne_mean);
803
- while (1)
809
+ for (int _i = 0; ; ++_i)
804
810
  {
811
+ EIGENRAND_CHECK_INFINITY_LOOP();
805
812
  val = pmul(val, ur.template packetOp<PacketType>(rng));
806
813
  auto c = reinterpret_to_int(pcmplt(pne_mean, val));
807
814
  if (pmovemask(c) == 0) break;
@@ -817,15 +824,16 @@ namespace Eigen
817
824
  pmean = pset1<PacketType>(mean),
818
825
  plog_mean = pset1<PacketType>(log_mean),
819
826
  pg1 = pset1<PacketType>(g1);
820
- while (1)
827
+ for (int _i = 0; ; ++_i)
821
828
  {
829
+ EIGENRAND_CHECK_INFINITY_LOOP();
822
830
  PacketType fres, yx, psin, pcos;
823
831
  psincos(pmul(ppi, ur.template packetOp<PacketType>(rng)), psin, pcos);
824
832
  yx = pdiv(psin, pcos);
825
833
  fres = ptruncate(padd(pmul(psqrt_tmean, yx), pmean));
826
834
 
827
835
  auto p1 = pmul(padd(pmul(yx, yx), pset1<PacketType>(1)), pset1<PacketType>(0.9));
828
- auto p2 = pexp(psub(psub(pmul(fres, plog_mean), plgamma(padd(fres, pset1<PacketType>(1)))), pg1));
836
+ auto p2 = pexp(psub(psub(pmul(fres, plog_mean), plgamma_approx(padd(fres, pset1<PacketType>(1)))), pg1));
829
837
 
830
838
  auto c1 = pcmple(pset1<PacketType>(0), fres);
831
839
  auto c2 = pcmple(ur.template packetOp<PacketType>(rng), pmul(p1, p2));
@@ -852,7 +860,7 @@ namespace Eigen
852
860
 
853
861
  PoissonGen<_Scalar> poisson;
854
862
  _Scalar trials;
855
- double p, small_p, g1, sqrt_v, log_small_p, log_small_q;
863
+ double p = 0, small_p = 0, g1 = 0, sqrt_v = 0, log_small_p = 0, log_small_q = 0;
856
864
 
857
865
  public:
858
866
  using Scalar = _Scalar;
@@ -903,8 +911,9 @@ namespace Eigen
903
911
  }
904
912
  else
905
913
  {
906
- while (1)
914
+ for (int _i = 0; ; ++_i)
907
915
  {
916
+ EIGENRAND_CHECK_INFINITY_LOOP();
908
917
  double ys;
909
918
  ys = std::tan(constant::pi * poisson.ur(rng));
910
919
  res = (_Scalar)(sqrt_v * ys + poisson.mean);
@@ -954,8 +963,9 @@ namespace Eigen
954
963
  plog_small_p = pset1<PacketType>(log_small_p),
955
964
  plog_small_q = pset1<PacketType>(log_small_q),
956
965
  pg1 = pset1<PacketType>(g1);
957
- while (1)
966
+ for (int _i = 0; ; ++_i)
958
967
  {
968
+ EIGENRAND_CHECK_INFINITY_LOOP();
959
969
  PacketType fres, ys, psin, pcos;
960
970
  psincos(pmul(ppi, poisson.ur.template packetOp<PacketType>(rng)), psin, pcos);
961
971
  ys = pdiv(psin, pcos);
@@ -964,8 +974,8 @@ namespace Eigen
964
974
  auto p1 = pmul(pmul(pset1<PacketType>(1.2), psqrt_v), padd(pset1<PacketType>(1), pmul(ys, ys)));
965
975
  auto p2 = pexp(
966
976
  padd(padd(psub(
967
- psub(pg1, plgamma(padd(fres, pset1<PacketType>(1)))),
968
- plgamma(psub(padd(ptrials, pset1<PacketType>(1)), fres))
977
+ psub(pg1, plgamma_approx(padd(fres, pset1<PacketType>(1)))),
978
+ plgamma_approx(psub(padd(ptrials, pset1<PacketType>(1)), fres))
969
979
  ), pmul(fres, plog_small_p)), pmul(psub(ptrials, fres), plog_small_q))
970
980
  );
971
981
 
@@ -1503,6 +1513,17 @@ namespace Eigen
1503
1513
  };
1504
1514
  }
1505
1515
  }
1516
+
1517
+ #ifdef EIGEN_VECTORIZE_NEON
1518
+ namespace internal
1519
+ {
1520
+ template<typename _Scalar, typename Urng, bool _mutable>
1521
+ struct functor_traits<scalar_rng_adaptor<Rand::DiscreteGen<_Scalar, double>, _Scalar, Urng, _mutable> >
1522
+ {
1523
+ enum { Cost = HugeCost, PacketAccess = 0, IsRepeatable = false };
1524
+ };
1525
+ }
1526
+ #endif
1506
1527
  }
1507
1528
 
1508
1529
  #endif
@@ -2,10 +2,10 @@
2
2
  * @file GammaPoisson.h
3
3
  * @author bab2min (bab2min@gmail.com)
4
4
  * @brief
5
- * @version 0.3.0
6
- * @date 2020-10-07
5
+ * @version 0.3.3
6
+ * @date 2021-03-31
7
7
  *
8
- * @copyright Copyright (c) 2020
8
+ * @copyright Copyright (c) 2020-2021
9
9
  *
10
10
  */
11
11
 
@@ -58,7 +58,6 @@ namespace Eigen
58
58
  EIGEN_STRONG_INLINE const Packet packetOp(Rng&& rng)
59
59
  {
60
60
  using namespace Eigen::internal;
61
- using ur_base = UniformRealGen<float>;
62
61
  using PacketType = decltype(reinterpret_to_float(std::declval<Packet>()));
63
62
 
64
63
  auto mean = gamma.template packetOp<PacketType>(rng);
@@ -66,8 +65,9 @@ namespace Eigen
66
65
  PacketType val = pset1<PacketType>(1), pne_mean = pexp(pnegate(mean));
67
66
  if (pmovemask(pcmplt(pset1<PacketType>(12), mean)) == 0)
68
67
  {
69
- while (1)
68
+ for (int _i = 0; ; ++_i)
70
69
  {
70
+ EIGENRAND_CHECK_INFINITY_LOOP();
71
71
  val = pmul(val, ur.template packetOp<PacketType>(rng));
72
72
  auto c = reinterpret_to_int(pcmplt(pne_mean, val));
73
73
  if (pmovemask(c) == 0) break;
@@ -81,16 +81,17 @@ namespace Eigen
81
81
  const PacketType ppi = pset1<PacketType>(constant::pi),
82
82
  psqrt_tmean = psqrt(pmul(pset1<PacketType>(2), mean)),
83
83
  plog_mean = plog(mean),
84
- pg1 = psub(pmul(mean, plog_mean), plgamma(padd(mean, pset1<PacketType>(1))));
85
- while (1)
84
+ pg1 = psub(pmul(mean, plog_mean), plgamma_approx(padd(mean, pset1<PacketType>(1))));
85
+ for (int _i = 0; ; ++_i)
86
86
  {
87
+ EIGENRAND_CHECK_INFINITY_LOOP();
87
88
  PacketType fres, yx, psin, pcos;
88
89
  psincos(pmul(ppi, ur.template packetOp<PacketType>(rng)), psin, pcos);
89
90
  yx = pdiv(psin, pcos);
90
91
  fres = ptruncate(padd(pmul(psqrt_tmean, yx), mean));
91
92
 
92
93
  auto p1 = pmul(padd(pmul(yx, yx), pset1<PacketType>(1)), pset1<PacketType>(0.9));
93
- auto p2 = pexp(psub(psub(pmul(fres, plog_mean), plgamma(padd(fres, pset1<PacketType>(1)))), pg1));
94
+ auto p2 = pexp(psub(psub(pmul(fres, plog_mean), plgamma_approx(padd(fres, pset1<PacketType>(1)))), pg1));
94
95
 
95
96
  auto c1 = pcmple(pset1<PacketType>(0), fres);
96
97
  auto c2 = pcmple(ur.template packetOp<PacketType>(rng), pmul(p1, p2));