tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -11,12 +11,12 @@
11
11
  #ifndef EIGEN_TRIANGULARMATRIX_H
12
12
  #define EIGEN_TRIANGULARMATRIX_H
13
13
 
14
- namespace Eigen {
14
+ namespace Eigen {
15
15
 
16
16
  namespace internal {
17
-
17
+
18
18
  template<int Side, typename TriangularType, typename Rhs> struct triangular_solve_retval;
19
-
19
+
20
20
  }
21
21
 
22
22
  /** \class TriangularBase
@@ -34,16 +34,16 @@ template<typename Derived> class TriangularBase : public EigenBase<Derived>
34
34
  ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
35
35
  MaxRowsAtCompileTime = internal::traits<Derived>::MaxRowsAtCompileTime,
36
36
  MaxColsAtCompileTime = internal::traits<Derived>::MaxColsAtCompileTime,
37
-
37
+
38
38
  SizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::RowsAtCompileTime,
39
39
  internal::traits<Derived>::ColsAtCompileTime>::ret),
40
40
  /**< This is equal to the number of coefficients, i.e. the number of
41
41
  * rows times the number of columns, or to \a Dynamic if this is not
42
42
  * known at compile-time. \sa RowsAtCompileTime, ColsAtCompileTime */
43
-
43
+
44
44
  MaxSizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::MaxRowsAtCompileTime,
45
45
  internal::traits<Derived>::MaxColsAtCompileTime>::ret)
46
-
46
+
47
47
  };
48
48
  typedef typename internal::traits<Derived>::Scalar Scalar;
49
49
  typedef typename internal::traits<Derived>::StorageKind StorageKind;
@@ -53,18 +53,19 @@ template<typename Derived> class TriangularBase : public EigenBase<Derived>
53
53
  typedef Derived const& Nested;
54
54
 
55
55
  EIGEN_DEVICE_FUNC
56
- inline TriangularBase() { eigen_assert(!((Mode&UnitDiag) && (Mode&ZeroDiag))); }
56
+ inline TriangularBase() { eigen_assert(!((int(Mode) & int(UnitDiag)) && (int(Mode) & int(ZeroDiag)))); }
57
+
58
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
59
+ inline Index rows() const EIGEN_NOEXCEPT { return derived().rows(); }
60
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
61
+ inline Index cols() const EIGEN_NOEXCEPT { return derived().cols(); }
62
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
63
+ inline Index outerStride() const EIGEN_NOEXCEPT { return derived().outerStride(); }
64
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
65
+ inline Index innerStride() const EIGEN_NOEXCEPT { return derived().innerStride(); }
57
66
 
58
- EIGEN_DEVICE_FUNC
59
- inline Index rows() const { return derived().rows(); }
60
- EIGEN_DEVICE_FUNC
61
- inline Index cols() const { return derived().cols(); }
62
- EIGEN_DEVICE_FUNC
63
- inline Index outerStride() const { return derived().outerStride(); }
64
- EIGEN_DEVICE_FUNC
65
- inline Index innerStride() const { return derived().innerStride(); }
66
-
67
67
  // dummy resize function
68
+ EIGEN_DEVICE_FUNC
68
69
  void resize(Index rows, Index cols)
69
70
  {
70
71
  EIGEN_UNUSED_VARIABLE(rows);
@@ -155,7 +156,7 @@ template<typename Derived> class TriangularBase : public EigenBase<Derived>
155
156
  * \param MatrixType the type of the object in which we are taking the triangular part
156
157
  * \param Mode the kind of triangular matrix expression to construct. Can be #Upper,
157
158
  * #Lower, #UnitUpper, #UnitLower, #StrictlyUpper, or #StrictlyLower.
158
- * This is in fact a bit field; it must have either #Upper or #Lower,
159
+ * This is in fact a bit field; it must have either #Upper or #Lower,
159
160
  * and additionally it may have #UnitDiag or #ZeroDiag or neither.
160
161
  *
161
162
  * This class represents a triangular part of a matrix, not necessarily square. Strictly speaking, for rectangular
@@ -197,7 +198,8 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
197
198
  typedef typename internal::traits<TriangularView>::MatrixTypeNestedNonRef MatrixTypeNestedNonRef;
198
199
 
199
200
  typedef typename internal::remove_all<typename MatrixType::ConjugateReturnType>::type MatrixConjugateReturnType;
200
-
201
+ typedef TriangularView<typename internal::add_const<MatrixType>::type, _Mode> ConstTriangularView;
202
+
201
203
  public:
202
204
 
203
205
  typedef typename internal::traits<TriangularView>::StorageKind StorageKind;
@@ -216,17 +218,15 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
216
218
  EIGEN_DEVICE_FUNC
217
219
  explicit inline TriangularView(MatrixType& matrix) : m_matrix(matrix)
218
220
  {}
219
-
220
- using Base::operator=;
221
- TriangularView& operator=(const TriangularView &other)
222
- { return Base::operator=(other); }
221
+
222
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(TriangularView)
223
223
 
224
224
  /** \copydoc EigenBase::rows() */
225
- EIGEN_DEVICE_FUNC
226
- inline Index rows() const { return m_matrix.rows(); }
225
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
226
+ inline Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
227
227
  /** \copydoc EigenBase::cols() */
228
- EIGEN_DEVICE_FUNC
229
- inline Index cols() const { return m_matrix.cols(); }
228
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
229
+ inline Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
230
230
 
231
231
  /** \returns a const reference to the nested expression */
232
232
  EIGEN_DEVICE_FUNC
@@ -235,13 +235,25 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
235
235
  /** \returns a reference to the nested expression */
236
236
  EIGEN_DEVICE_FUNC
237
237
  NestedExpression& nestedExpression() { return m_matrix; }
238
-
238
+
239
239
  typedef TriangularView<const MatrixConjugateReturnType,Mode> ConjugateReturnType;
240
240
  /** \sa MatrixBase::conjugate() const */
241
241
  EIGEN_DEVICE_FUNC
242
242
  inline const ConjugateReturnType conjugate() const
243
243
  { return ConjugateReturnType(m_matrix.conjugate()); }
244
244
 
245
+ /** \returns an expression of the complex conjugate of \c *this if Cond==true,
246
+ * returns \c *this otherwise.
247
+ */
248
+ template<bool Cond>
249
+ EIGEN_DEVICE_FUNC
250
+ inline typename internal::conditional<Cond,ConjugateReturnType,ConstTriangularView>::type
251
+ conjugateIf() const
252
+ {
253
+ typedef typename internal::conditional<Cond,ConjugateReturnType,ConstTriangularView>::type ReturnType;
254
+ return ReturnType(m_matrix.template conjugateIf<Cond>());
255
+ }
256
+
245
257
  typedef TriangularView<const typename MatrixType::AdjointReturnType,TransposeMode> AdjointReturnType;
246
258
  /** \sa MatrixBase::adjoint() const */
247
259
  EIGEN_DEVICE_FUNC
@@ -257,7 +269,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
257
269
  typename MatrixType::TransposeReturnType tmp(m_matrix);
258
270
  return TransposeReturnType(tmp);
259
271
  }
260
-
272
+
261
273
  typedef TriangularView<const typename MatrixType::ConstTransposeReturnType,TransposeMode> ConstTransposeReturnType;
262
274
  /** \sa MatrixBase::transpose() const */
263
275
  EIGEN_DEVICE_FUNC
@@ -268,10 +280,10 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
268
280
 
269
281
  template<typename Other>
270
282
  EIGEN_DEVICE_FUNC
271
- inline const Solve<TriangularView, Other>
283
+ inline const Solve<TriangularView, Other>
272
284
  solve(const MatrixBase<Other>& other) const
273
285
  { return Solve<TriangularView, Other>(*this, other.derived()); }
274
-
286
+
275
287
  // workaround MSVC ICE
276
288
  #if EIGEN_COMP_MSVC
277
289
  template<int Side, typename Other>
@@ -315,7 +327,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularView
315
327
  else
316
328
  return m_matrix.diagonal().prod();
317
329
  }
318
-
330
+
319
331
  protected:
320
332
 
321
333
  MatrixTypeNested m_matrix;
@@ -377,7 +389,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
377
389
  internal::call_assignment_no_alias(derived(), other.derived(), internal::sub_assign_op<Scalar,typename Other::Scalar>());
378
390
  return derived();
379
391
  }
380
-
392
+
381
393
  /** \sa MatrixBase::operator*=() */
382
394
  EIGEN_DEVICE_FUNC
383
395
  TriangularViewType& operator*=(const typename internal::traits<MatrixType>::Scalar& other) { return *this = derived().nestedExpression() * other; }
@@ -435,14 +447,14 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
435
447
  TriangularViewType& operator=(const TriangularViewImpl& other)
436
448
  { return *this = other.derived().nestedExpression(); }
437
449
 
438
- /** \deprecated */
439
450
  template<typename OtherDerived>
440
- EIGEN_DEVICE_FUNC
451
+ /** \deprecated */
452
+ EIGEN_DEPRECATED EIGEN_DEVICE_FUNC
441
453
  void lazyAssign(const TriangularBase<OtherDerived>& other);
442
454
 
443
- /** \deprecated */
444
455
  template<typename OtherDerived>
445
- EIGEN_DEVICE_FUNC
456
+ /** \deprecated */
457
+ EIGEN_DEPRECATED EIGEN_DEVICE_FUNC
446
458
  void lazyAssign(const MatrixBase<OtherDerived>& other);
447
459
  #endif
448
460
 
@@ -470,7 +482,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
470
482
  * \a Side==OnTheLeft (the default), or the right-inverse-multiply \a other * inverse(\c *this) if
471
483
  * \a Side==OnTheRight.
472
484
  *
473
- * Note that the template parameter \c Side can be ommitted, in which case \c Side==OnTheLeft
485
+ * Note that the template parameter \c Side can be omitted, in which case \c Side==OnTheLeft
474
486
  *
475
487
  * The matrix \c *this must be triangular and invertible (i.e., all the coefficients of the
476
488
  * diagonal must be non zero). It works as a forward (resp. backward) substitution if \c *this
@@ -488,7 +500,6 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
488
500
  * \sa TriangularView::solveInPlace()
489
501
  */
490
502
  template<int Side, typename Other>
491
- EIGEN_DEVICE_FUNC
492
503
  inline const internal::triangular_solve_retval<Side,TriangularViewType, Other>
493
504
  solve(const MatrixBase<Other>& other) const;
494
505
 
@@ -497,7 +508,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
497
508
  * \warning The parameter is only marked 'const' to make the C++ compiler accept a temporary expression here.
498
509
  * This function will const_cast it, so constness isn't honored here.
499
510
  *
500
- * Note that the template parameter \c Side can be ommitted, in which case \c Side==OnTheLeft
511
+ * Note that the template parameter \c Side can be omitted, in which case \c Side==OnTheLeft
501
512
  *
502
513
  * See TriangularView:solve() for the details.
503
514
  */
@@ -523,10 +534,10 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
523
534
  call_assignment(derived(), other.const_cast_derived(), internal::swap_assign_op<Scalar>());
524
535
  }
525
536
 
526
- /** \deprecated
527
- * Shortcut for \code (*this).swap(other.triangularView<(*this)::Mode>()) \endcode */
537
+ /** Shortcut for \code (*this).swap(other.triangularView<(*this)::Mode>()) \endcode */
528
538
  template<typename OtherDerived>
529
- EIGEN_DEVICE_FUNC
539
+ /** \deprecated */
540
+ EIGEN_DEPRECATED EIGEN_DEVICE_FUNC
530
541
  void swap(MatrixBase<OtherDerived> const & other)
531
542
  {
532
543
  EIGEN_STATIC_ASSERT_LVALUE(OtherDerived);
@@ -544,6 +555,10 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
544
555
  template<typename ProductType>
545
556
  EIGEN_DEVICE_FUNC
546
557
  EIGEN_STRONG_INLINE TriangularViewType& _assignProduct(const ProductType& prod, const Scalar& alpha, bool beta);
558
+ protected:
559
+ EIGEN_DEFAULT_COPY_CONSTRUCTOR(TriangularViewImpl)
560
+ EIGEN_DEFAULT_EMPTY_CONSTRUCTOR_AND_DESTRUCTOR(TriangularViewImpl)
561
+
547
562
  };
548
563
 
549
564
  /***************************************************************************
@@ -554,7 +569,7 @@ template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_Mat
554
569
  // FIXME should we keep that possibility
555
570
  template<typename MatrixType, unsigned int Mode>
556
571
  template<typename OtherDerived>
557
- inline TriangularView<MatrixType, Mode>&
572
+ EIGEN_DEVICE_FUNC inline TriangularView<MatrixType, Mode>&
558
573
  TriangularViewImpl<MatrixType, Mode, Dense>::operator=(const MatrixBase<OtherDerived>& other)
559
574
  {
560
575
  internal::call_assignment_no_alias(derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
@@ -564,7 +579,7 @@ TriangularViewImpl<MatrixType, Mode, Dense>::operator=(const MatrixBase<OtherDer
564
579
  // FIXME should we keep that possibility
565
580
  template<typename MatrixType, unsigned int Mode>
566
581
  template<typename OtherDerived>
567
- void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const MatrixBase<OtherDerived>& other)
582
+ EIGEN_DEVICE_FUNC void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const MatrixBase<OtherDerived>& other)
568
583
  {
569
584
  internal::call_assignment_no_alias(derived(), other.template triangularView<Mode>());
570
585
  }
@@ -573,7 +588,7 @@ void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const MatrixBase<Ot
573
588
 
574
589
  template<typename MatrixType, unsigned int Mode>
575
590
  template<typename OtherDerived>
576
- inline TriangularView<MatrixType, Mode>&
591
+ EIGEN_DEVICE_FUNC inline TriangularView<MatrixType, Mode>&
577
592
  TriangularViewImpl<MatrixType, Mode, Dense>::operator=(const TriangularBase<OtherDerived>& other)
578
593
  {
579
594
  eigen_assert(Mode == int(OtherDerived::Mode));
@@ -583,7 +598,7 @@ TriangularViewImpl<MatrixType, Mode, Dense>::operator=(const TriangularBase<Othe
583
598
 
584
599
  template<typename MatrixType, unsigned int Mode>
585
600
  template<typename OtherDerived>
586
- void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const TriangularBase<OtherDerived>& other)
601
+ EIGEN_DEVICE_FUNC void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const TriangularBase<OtherDerived>& other)
587
602
  {
588
603
  eigen_assert(Mode == int(OtherDerived::Mode));
589
604
  internal::call_assignment_no_alias(derived(), other.derived());
@@ -598,7 +613,7 @@ void TriangularViewImpl<MatrixType, Mode, Dense>::lazyAssign(const TriangularBas
598
613
  * If the matrix is triangular, the opposite part is set to zero. */
599
614
  template<typename Derived>
600
615
  template<typename DenseDerived>
601
- void TriangularBase<Derived>::evalTo(MatrixBase<DenseDerived> &other) const
616
+ EIGEN_DEVICE_FUNC void TriangularBase<Derived>::evalTo(MatrixBase<DenseDerived> &other) const
602
617
  {
603
618
  evalToLazy(other.derived());
604
619
  }
@@ -624,6 +639,7 @@ void TriangularBase<Derived>::evalTo(MatrixBase<DenseDerived> &other) const
624
639
  */
625
640
  template<typename Derived>
626
641
  template<unsigned int Mode>
642
+ EIGEN_DEVICE_FUNC
627
643
  typename MatrixBase<Derived>::template TriangularViewReturnType<Mode>::Type
628
644
  MatrixBase<Derived>::triangularView()
629
645
  {
@@ -633,6 +649,7 @@ MatrixBase<Derived>::triangularView()
633
649
  /** This is the const version of MatrixBase::triangularView() */
634
650
  template<typename Derived>
635
651
  template<unsigned int Mode>
652
+ EIGEN_DEVICE_FUNC
636
653
  typename MatrixBase<Derived>::template ConstTriangularViewReturnType<Mode>::Type
637
654
  MatrixBase<Derived>::triangularView() const
638
655
  {
@@ -698,7 +715,7 @@ bool MatrixBase<Derived>::isLowerTriangular(const RealScalar& prec) const
698
715
 
699
716
  namespace internal {
700
717
 
701
-
718
+
702
719
  // TODO currently a triangular expression has the form TriangularView<.,.>
703
720
  // in the future triangular-ness should be defined by the expression traits
704
721
  // such that Transpose<TriangularView<.,.> > is valid. (currently TriangularBase::transpose() is overloaded to make it work)
@@ -715,6 +732,7 @@ struct unary_evaluator<TriangularView<MatrixType,Mode>, IndexBased>
715
732
  {
716
733
  typedef TriangularView<MatrixType,Mode> XprType;
717
734
  typedef evaluator<typename internal::remove_all<MatrixType>::type> Base;
735
+ EIGEN_DEVICE_FUNC
718
736
  unary_evaluator(const XprType &xpr) : Base(xpr.nestedExpression()) {}
719
737
  };
720
738
 
@@ -726,7 +744,7 @@ struct Dense2Triangular {};
726
744
 
727
745
  template<typename Kernel, unsigned int Mode, int UnrollCount, bool ClearOpposite> struct triangular_assignment_loop;
728
746
 
729
-
747
+
730
748
  /** \internal Specialization of the dense assignment kernel for triangular matrices.
731
749
  * The main difference is that the triangular, diagonal, and opposite parts are processed through three different functions.
732
750
  * \tparam UpLo must be either Lower or Upper
@@ -743,17 +761,17 @@ protected:
743
761
  using Base::m_src;
744
762
  using Base::m_functor;
745
763
  public:
746
-
764
+
747
765
  typedef typename Base::DstEvaluatorType DstEvaluatorType;
748
766
  typedef typename Base::SrcEvaluatorType SrcEvaluatorType;
749
767
  typedef typename Base::Scalar Scalar;
750
768
  typedef typename Base::AssignmentTraits AssignmentTraits;
751
-
752
-
769
+
770
+
753
771
  EIGEN_DEVICE_FUNC triangular_dense_assignment_kernel(DstEvaluatorType &dst, const SrcEvaluatorType &src, const Functor &func, DstXprType& dstExpr)
754
772
  : Base(dst, src, func, dstExpr)
755
773
  {}
756
-
774
+
757
775
  #ifdef EIGEN_INTERNAL_DEBUGGING
758
776
  EIGEN_DEVICE_FUNC void assignCoeff(Index row, Index col)
759
777
  {
@@ -763,16 +781,16 @@ public:
763
781
  #else
764
782
  using Base::assignCoeff;
765
783
  #endif
766
-
784
+
767
785
  EIGEN_DEVICE_FUNC void assignDiagonalCoeff(Index id)
768
786
  {
769
787
  if(Mode==UnitDiag && SetOpposite) m_functor.assignCoeff(m_dst.coeffRef(id,id), Scalar(1));
770
788
  else if(Mode==ZeroDiag && SetOpposite) m_functor.assignCoeff(m_dst.coeffRef(id,id), Scalar(0));
771
789
  else if(Mode==0) Base::assignCoeff(id,id);
772
790
  }
773
-
791
+
774
792
  EIGEN_DEVICE_FUNC void assignOppositeCoeff(Index row, Index col)
775
- {
793
+ {
776
794
  eigen_internal_assert(row!=col);
777
795
  if(SetOpposite)
778
796
  m_functor.assignCoeff(m_dst.coeffRef(row,col), Scalar(0));
@@ -793,17 +811,17 @@ void call_triangular_assignment_loop(DstXprType& dst, const SrcXprType& src, con
793
811
  if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
794
812
  dst.resize(dstRows, dstCols);
795
813
  DstEvaluatorType dstEvaluator(dst);
796
-
814
+
797
815
  typedef triangular_dense_assignment_kernel< Mode&(Lower|Upper),Mode&(UnitDiag|ZeroDiag|SelfAdjoint),SetOpposite,
798
816
  DstEvaluatorType,SrcEvaluatorType,Functor> Kernel;
799
817
  Kernel kernel(dstEvaluator, srcEvaluator, func, dst.const_cast_derived());
800
-
818
+
801
819
  enum {
802
820
  unroll = DstXprType::SizeAtCompileTime != Dynamic
803
821
  && SrcEvaluatorType::CoeffReadCost < HugeCost
804
- && DstXprType::SizeAtCompileTime * (DstEvaluatorType::CoeffReadCost+SrcEvaluatorType::CoeffReadCost) / 2 <= EIGEN_UNROLLING_LIMIT
822
+ && DstXprType::SizeAtCompileTime * (int(DstEvaluatorType::CoeffReadCost) + int(SrcEvaluatorType::CoeffReadCost)) / 2 <= EIGEN_UNROLLING_LIMIT
805
823
  };
806
-
824
+
807
825
  triangular_assignment_loop<Kernel, Mode, unroll ? int(DstXprType::SizeAtCompileTime) : Dynamic, SetOpposite>::run(kernel);
808
826
  }
809
827
 
@@ -825,8 +843,8 @@ struct Assignment<DstXprType, SrcXprType, Functor, Triangular2Triangular>
825
843
  EIGEN_DEVICE_FUNC static void run(DstXprType &dst, const SrcXprType &src, const Functor &func)
826
844
  {
827
845
  eigen_assert(int(DstXprType::Mode) == int(SrcXprType::Mode));
828
-
829
- call_triangular_assignment_loop<DstXprType::Mode, false>(dst, src, func);
846
+
847
+ call_triangular_assignment_loop<DstXprType::Mode, false>(dst, src, func);
830
848
  }
831
849
  };
832
850
 
@@ -835,7 +853,7 @@ struct Assignment<DstXprType, SrcXprType, Functor, Triangular2Dense>
835
853
  {
836
854
  EIGEN_DEVICE_FUNC static void run(DstXprType &dst, const SrcXprType &src, const Functor &func)
837
855
  {
838
- call_triangular_assignment_loop<SrcXprType::Mode, (SrcXprType::Mode&SelfAdjoint)==0>(dst, src, func);
856
+ call_triangular_assignment_loop<SrcXprType::Mode, (int(SrcXprType::Mode) & int(SelfAdjoint)) == 0>(dst, src, func);
839
857
  }
840
858
  };
841
859
 
@@ -844,7 +862,7 @@ struct Assignment<DstXprType, SrcXprType, Functor, Dense2Triangular>
844
862
  {
845
863
  EIGEN_DEVICE_FUNC static void run(DstXprType &dst, const SrcXprType &src, const Functor &func)
846
864
  {
847
- call_triangular_assignment_loop<DstXprType::Mode, false>(dst, src, func);
865
+ call_triangular_assignment_loop<DstXprType::Mode, false>(dst, src, func);
848
866
  }
849
867
  };
850
868
 
@@ -855,19 +873,19 @@ struct triangular_assignment_loop
855
873
  // FIXME: this is not very clean, perhaps this information should be provided by the kernel?
856
874
  typedef typename Kernel::DstEvaluatorType DstEvaluatorType;
857
875
  typedef typename DstEvaluatorType::XprType DstXprType;
858
-
876
+
859
877
  enum {
860
878
  col = (UnrollCount-1) / DstXprType::RowsAtCompileTime,
861
879
  row = (UnrollCount-1) % DstXprType::RowsAtCompileTime
862
880
  };
863
-
881
+
864
882
  typedef typename Kernel::Scalar Scalar;
865
883
 
866
884
  EIGEN_DEVICE_FUNC
867
885
  static inline void run(Kernel &kernel)
868
886
  {
869
887
  triangular_assignment_loop<Kernel, Mode, UnrollCount-1, SetOpposite>::run(kernel);
870
-
888
+
871
889
  if(row==col)
872
890
  kernel.assignDiagonalCoeff(row);
873
891
  else if( ((Mode&Lower) && row>col) || ((Mode&Upper) && row<col) )
@@ -910,10 +928,10 @@ struct triangular_assignment_loop<Kernel, Mode, Dynamic, SetOpposite>
910
928
  }
911
929
  else
912
930
  i = maxi;
913
-
931
+
914
932
  if(i<kernel.rows()) // then i==j
915
933
  kernel.assignDiagonalCoeff(i++);
916
-
934
+
917
935
  if (((Mode&Upper) && SetOpposite) || (Mode&Lower))
918
936
  {
919
937
  for(; i < kernel.rows(); ++i)
@@ -930,14 +948,14 @@ struct triangular_assignment_loop<Kernel, Mode, Dynamic, SetOpposite>
930
948
  * If the matrix is triangular, the opposite part is set to zero. */
931
949
  template<typename Derived>
932
950
  template<typename DenseDerived>
933
- void TriangularBase<Derived>::evalToLazy(MatrixBase<DenseDerived> &other) const
951
+ EIGEN_DEVICE_FUNC void TriangularBase<Derived>::evalToLazy(MatrixBase<DenseDerived> &other) const
934
952
  {
935
953
  other.derived().resize(this->rows(), this->cols());
936
- internal::call_triangular_assignment_loop<Derived::Mode,(Derived::Mode&SelfAdjoint)==0 /* SetOpposite */>(other.derived(), derived().nestedExpression());
954
+ internal::call_triangular_assignment_loop<Derived::Mode, (int(Derived::Mode) & int(SelfAdjoint)) == 0 /* SetOpposite */>(other.derived(), derived().nestedExpression());
937
955
  }
938
956
 
939
957
  namespace internal {
940
-
958
+
941
959
  // Triangular = Product
942
960
  template< typename DstXprType, typename Lhs, typename Rhs, typename Scalar>
943
961
  struct Assignment<DstXprType, Product<Lhs,Rhs,DefaultProduct>, internal::assign_op<Scalar,typename Product<Lhs,Rhs,DefaultProduct>::Scalar>, Dense2Triangular>
@@ -950,7 +968,7 @@ struct Assignment<DstXprType, Product<Lhs,Rhs,DefaultProduct>, internal::assign_
950
968
  if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
951
969
  dst.resize(dstRows, dstCols);
952
970
 
953
- dst._assignProduct(src, 1, 0);
971
+ dst._assignProduct(src, Scalar(1), false);
954
972
  }
955
973
  };
956
974
 
@@ -961,7 +979,7 @@ struct Assignment<DstXprType, Product<Lhs,Rhs,DefaultProduct>, internal::add_ass
961
979
  typedef Product<Lhs,Rhs,DefaultProduct> SrcXprType;
962
980
  static void run(DstXprType &dst, const SrcXprType &src, const internal::add_assign_op<Scalar,typename SrcXprType::Scalar> &)
963
981
  {
964
- dst._assignProduct(src, 1, 1);
982
+ dst._assignProduct(src, Scalar(1), true);
965
983
  }
966
984
  };
967
985
 
@@ -972,7 +990,7 @@ struct Assignment<DstXprType, Product<Lhs,Rhs,DefaultProduct>, internal::sub_ass
972
990
  typedef Product<Lhs,Rhs,DefaultProduct> SrcXprType;
973
991
  static void run(DstXprType &dst, const SrcXprType &src, const internal::sub_assign_op<Scalar,typename SrcXprType::Scalar> &)
974
992
  {
975
- dst._assignProduct(src, -1, 1);
993
+ dst._assignProduct(src, Scalar(-1), true);
976
994
  }
977
995
  };
978
996
 
@@ -35,7 +35,7 @@ struct traits<VectorBlock<VectorType, Size> >
35
35
  * It is the return type of DenseBase::segment(Index,Index) and DenseBase::segment<int>(Index) and
36
36
  * most of the time this is the only way it is used.
37
37
  *
38
- * However, if you want to directly maniputate sub-vector expressions,
38
+ * However, if you want to directly manipulate sub-vector expressions,
39
39
  * for instance if you want to write a function returning such an expression, you
40
40
  * will need to use this class.
41
41
  *
@@ -71,8 +71,8 @@ template<typename VectorType, int Size> class VectorBlock
71
71
 
72
72
  /** Dynamic-size constructor
73
73
  */
74
- EIGEN_DEVICE_FUNC
75
- inline VectorBlock(VectorType& vector, Index start, Index size)
74
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
75
+ VectorBlock(VectorType& vector, Index start, Index size)
76
76
  : Base(vector,
77
77
  IsColVector ? start : 0, IsColVector ? 0 : start,
78
78
  IsColVector ? size : 1, IsColVector ? 1 : size)
@@ -82,8 +82,8 @@ template<typename VectorType, int Size> class VectorBlock
82
82
 
83
83
  /** Fixed-size constructor
84
84
  */
85
- EIGEN_DEVICE_FUNC
86
- inline VectorBlock(VectorType& vector, Index start)
85
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
86
+ VectorBlock(VectorType& vector, Index start)
87
87
  : Base(vector, IsColVector ? start : 0, IsColVector ? 0 : start)
88
88
  {
89
89
  EIGEN_STATIC_ASSERT_VECTOR_ONLY(VectorBlock);