tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -10,7 +10,7 @@
10
10
  #ifndef EIGEN_SELFADJOINTMATRIX_H
11
11
  #define EIGEN_SELFADJOINTMATRIX_H
12
12
 
13
- namespace Eigen {
13
+ namespace Eigen {
14
14
 
15
15
  /** \class SelfAdjointView
16
16
  * \ingroup Core_Module
@@ -58,14 +58,15 @@ template<typename _MatrixType, unsigned int UpLo> class SelfAdjointView
58
58
  typedef MatrixTypeNestedCleaned NestedExpression;
59
59
 
60
60
  /** \brief The type of coefficients in this matrix */
61
- typedef typename internal::traits<SelfAdjointView>::Scalar Scalar;
61
+ typedef typename internal::traits<SelfAdjointView>::Scalar Scalar;
62
62
  typedef typename MatrixType::StorageIndex StorageIndex;
63
63
  typedef typename internal::remove_all<typename MatrixType::ConjugateReturnType>::type MatrixConjugateReturnType;
64
+ typedef SelfAdjointView<typename internal::add_const<MatrixType>::type, UpLo> ConstSelfAdjointView;
64
65
 
65
66
  enum {
66
67
  Mode = internal::traits<SelfAdjointView>::Mode,
67
68
  Flags = internal::traits<SelfAdjointView>::Flags,
68
- TransposeMode = ((Mode & Upper) ? Lower : 0) | ((Mode & Lower) ? Upper : 0)
69
+ TransposeMode = ((int(Mode) & int(Upper)) ? Lower : 0) | ((int(Mode) & int(Lower)) ? Upper : 0)
69
70
  };
70
71
  typedef typename MatrixType::PlainObject PlainObject;
71
72
 
@@ -75,14 +76,14 @@ template<typename _MatrixType, unsigned int UpLo> class SelfAdjointView
75
76
  EIGEN_STATIC_ASSERT(UpLo==Lower || UpLo==Upper,SELFADJOINTVIEW_ACCEPTS_UPPER_AND_LOWER_MODE_ONLY);
76
77
  }
77
78
 
78
- EIGEN_DEVICE_FUNC
79
- inline Index rows() const { return m_matrix.rows(); }
80
- EIGEN_DEVICE_FUNC
81
- inline Index cols() const { return m_matrix.cols(); }
82
- EIGEN_DEVICE_FUNC
83
- inline Index outerStride() const { return m_matrix.outerStride(); }
84
- EIGEN_DEVICE_FUNC
85
- inline Index innerStride() const { return m_matrix.innerStride(); }
79
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
80
+ inline Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
81
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
82
+ inline Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
83
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
84
+ inline Index outerStride() const EIGEN_NOEXCEPT { return m_matrix.outerStride(); }
85
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
86
+ inline Index innerStride() const EIGEN_NOEXCEPT { return m_matrix.innerStride(); }
86
87
 
87
88
  /** \sa MatrixBase::coeff()
88
89
  * \warning the coordinates must fit into the referenced triangular part
@@ -131,7 +132,7 @@ template<typename _MatrixType, unsigned int UpLo> class SelfAdjointView
131
132
  {
132
133
  return Product<OtherDerived,SelfAdjointView>(lhs.derived(),rhs);
133
134
  }
134
-
135
+
135
136
  friend EIGEN_DEVICE_FUNC
136
137
  const SelfAdjointView<const EIGEN_SCALAR_BINARYOP_EXPR_RETURN_TYPE(Scalar,MatrixType,product),UpLo>
137
138
  operator*(const Scalar& s, const SelfAdjointView& mat)
@@ -197,6 +198,18 @@ template<typename _MatrixType, unsigned int UpLo> class SelfAdjointView
197
198
  inline const ConjugateReturnType conjugate() const
198
199
  { return ConjugateReturnType(m_matrix.conjugate()); }
199
200
 
201
+ /** \returns an expression of the complex conjugate of \c *this if Cond==true,
202
+ * returns \c *this otherwise.
203
+ */
204
+ template<bool Cond>
205
+ EIGEN_DEVICE_FUNC
206
+ inline typename internal::conditional<Cond,ConjugateReturnType,ConstSelfAdjointView>::type
207
+ conjugateIf() const
208
+ {
209
+ typedef typename internal::conditional<Cond,ConjugateReturnType,ConstSelfAdjointView>::type ReturnType;
210
+ return ReturnType(m_matrix.template conjugateIf<Cond>());
211
+ }
212
+
200
213
  typedef SelfAdjointView<const typename MatrixType::AdjointReturnType,TransposeMode> AdjointReturnType;
201
214
  /** \sa MatrixBase::adjoint() const */
202
215
  EIGEN_DEVICE_FUNC
@@ -287,17 +300,17 @@ protected:
287
300
  using Base::m_src;
288
301
  using Base::m_functor;
289
302
  public:
290
-
303
+
291
304
  typedef typename Base::DstEvaluatorType DstEvaluatorType;
292
305
  typedef typename Base::SrcEvaluatorType SrcEvaluatorType;
293
306
  typedef typename Base::Scalar Scalar;
294
307
  typedef typename Base::AssignmentTraits AssignmentTraits;
295
-
296
-
308
+
309
+
297
310
  EIGEN_DEVICE_FUNC triangular_dense_assignment_kernel(DstEvaluatorType &dst, const SrcEvaluatorType &src, const Functor &func, DstXprType& dstExpr)
298
311
  : Base(dst, src, func, dstExpr)
299
312
  {}
300
-
313
+
301
314
  EIGEN_DEVICE_FUNC void assignCoeff(Index row, Index col)
302
315
  {
303
316
  eigen_internal_assert(row!=col);
@@ -305,12 +318,12 @@ public:
305
318
  m_functor.assignCoeff(m_dst.coeffRef(row,col), tmp);
306
319
  m_functor.assignCoeff(m_dst.coeffRef(col,row), numext::conj(tmp));
307
320
  }
308
-
321
+
309
322
  EIGEN_DEVICE_FUNC void assignDiagonalCoeff(Index id)
310
323
  {
311
324
  Base::assignCoeff(id,id);
312
325
  }
313
-
326
+
314
327
  EIGEN_DEVICE_FUNC void assignOppositeCoeff(Index, Index)
315
328
  { eigen_internal_assert(false && "should never be called"); }
316
329
  };
@@ -324,7 +337,7 @@ public:
324
337
  /** This is the const version of MatrixBase::selfadjointView() */
325
338
  template<typename Derived>
326
339
  template<unsigned int UpLo>
327
- typename MatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type
340
+ EIGEN_DEVICE_FUNC typename MatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type
328
341
  MatrixBase<Derived>::selfadjointView() const
329
342
  {
330
343
  return typename ConstSelfAdjointViewReturnType<UpLo>::Type(derived());
@@ -341,7 +354,7 @@ MatrixBase<Derived>::selfadjointView() const
341
354
  */
342
355
  template<typename Derived>
343
356
  template<unsigned int UpLo>
344
- typename MatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type
357
+ EIGEN_DEVICE_FUNC typename MatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type
345
358
  MatrixBase<Derived>::selfadjointView()
346
359
  {
347
360
  return typename SelfAdjointViewReturnType<UpLo>::Type(derived());
@@ -13,13 +13,13 @@
13
13
  namespace Eigen {
14
14
 
15
15
  template<typename Decomposition, typename RhsType, typename StorageKind> class SolveImpl;
16
-
16
+
17
17
  /** \class Solve
18
18
  * \ingroup Core_Module
19
19
  *
20
20
  * \brief Pseudo expression representing a solving operation
21
21
  *
22
- * \tparam Decomposition the type of the matrix or decomposion object
22
+ * \tparam Decomposition the type of the matrix or decomposition object
23
23
  * \tparam Rhstype the type of the right-hand side
24
24
  *
25
25
  * This class represents an expression of A.solve(B)
@@ -64,13 +64,13 @@ class Solve : public SolveImpl<Decomposition,RhsType,typename internal::traits<R
64
64
  public:
65
65
  typedef typename internal::traits<Solve>::PlainObject PlainObject;
66
66
  typedef typename internal::traits<Solve>::StorageIndex StorageIndex;
67
-
67
+
68
68
  Solve(const Decomposition &dec, const RhsType &rhs)
69
69
  : m_dec(dec), m_rhs(rhs)
70
70
  {}
71
-
72
- EIGEN_DEVICE_FUNC Index rows() const { return m_dec.cols(); }
73
- EIGEN_DEVICE_FUNC Index cols() const { return m_rhs.cols(); }
71
+
72
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_dec.cols(); }
73
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
74
74
 
75
75
  EIGEN_DEVICE_FUNC const Decomposition& dec() const { return m_dec; }
76
76
  EIGEN_DEVICE_FUNC const RhsType& rhs() const { return m_rhs; }
@@ -87,14 +87,14 @@ class SolveImpl<Decomposition,RhsType,Dense>
87
87
  : public MatrixBase<Solve<Decomposition,RhsType> >
88
88
  {
89
89
  typedef Solve<Decomposition,RhsType> Derived;
90
-
90
+
91
91
  public:
92
-
92
+
93
93
  typedef MatrixBase<Solve<Decomposition,RhsType> > Base;
94
94
  EIGEN_DENSE_PUBLIC_INTERFACE(Derived)
95
95
 
96
96
  private:
97
-
97
+
98
98
  Scalar coeff(Index row, Index col) const;
99
99
  Scalar coeff(Index i) const;
100
100
  };
@@ -119,15 +119,15 @@ struct evaluator<Solve<Decomposition,RhsType> >
119
119
  typedef evaluator<PlainObject> Base;
120
120
 
121
121
  enum { Flags = Base::Flags | EvalBeforeNestingBit };
122
-
122
+
123
123
  EIGEN_DEVICE_FUNC explicit evaluator(const SolveType& solve)
124
124
  : m_result(solve.rows(), solve.cols())
125
125
  {
126
126
  ::new (static_cast<Base*>(this)) Base(m_result);
127
127
  solve.dec()._solve_impl(solve.rhs(), m_result);
128
128
  }
129
-
130
- protected:
129
+
130
+ protected:
131
131
  PlainObject m_result;
132
132
  };
133
133
 
@@ -176,12 +176,12 @@ struct Assignment<DstXprType, Solve<CwiseUnaryOp<internal::scalar_conjugate_op<t
176
176
  Index dstCols = src.cols();
177
177
  if((dst.rows()!=dstRows) || (dst.cols()!=dstCols))
178
178
  dst.resize(dstRows, dstCols);
179
-
179
+
180
180
  src.dec().nestedExpression().nestedExpression().template _solve_impl_transposed<true>(src.rhs(), dst);
181
181
  }
182
182
  };
183
183
 
184
- } // end namepsace internal
184
+ } // end namespace internal
185
185
 
186
186
  } // end namespace Eigen
187
187
 
@@ -10,7 +10,7 @@
10
10
  #ifndef EIGEN_SOLVETRIANGULAR_H
11
11
  #define EIGEN_SOLVETRIANGULAR_H
12
12
 
13
- namespace Eigen {
13
+ namespace Eigen {
14
14
 
15
15
  namespace internal {
16
16
 
@@ -19,7 +19,7 @@ namespace internal {
19
19
  template<typename LhsScalar, typename RhsScalar, typename Index, int Side, int Mode, bool Conjugate, int StorageOrder>
20
20
  struct triangular_solve_vector;
21
21
 
22
- template <typename Scalar, typename Index, int Side, int Mode, bool Conjugate, int TriStorageOrder, int OtherStorageOrder>
22
+ template <typename Scalar, typename Index, int Side, int Mode, bool Conjugate, int TriStorageOrder, int OtherStorageOrder, int OtherInnerStride>
23
23
  struct triangular_solve_matrix;
24
24
 
25
25
  // small helper struct extracting some traits on the underlying solver operation
@@ -54,7 +54,7 @@ struct triangular_solver_selector<Lhs,Rhs,Side,Mode,NoUnrolling,1>
54
54
  typedef blas_traits<Lhs> LhsProductTraits;
55
55
  typedef typename LhsProductTraits::ExtractType ActualLhsType;
56
56
  typedef Map<Matrix<RhsScalar,Dynamic,1>, Aligned> MappedRhs;
57
- static void run(const Lhs& lhs, Rhs& rhs)
57
+ static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
58
58
  {
59
59
  ActualLhsType actualLhs = LhsProductTraits::extract(lhs);
60
60
 
@@ -64,7 +64,7 @@ struct triangular_solver_selector<Lhs,Rhs,Side,Mode,NoUnrolling,1>
64
64
 
65
65
  ei_declare_aligned_stack_constructed_variable(RhsScalar,actualRhs,rhs.size(),
66
66
  (useRhsDirectly ? rhs.data() : 0));
67
-
67
+
68
68
  if(!useRhsDirectly)
69
69
  MappedRhs(actualRhs,rhs.size()) = rhs;
70
70
 
@@ -85,7 +85,7 @@ struct triangular_solver_selector<Lhs,Rhs,Side,Mode,NoUnrolling,Dynamic>
85
85
  typedef blas_traits<Lhs> LhsProductTraits;
86
86
  typedef typename LhsProductTraits::DirectLinearAccessType ActualLhsType;
87
87
 
88
- static void run(const Lhs& lhs, Rhs& rhs)
88
+ static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
89
89
  {
90
90
  typename internal::add_const_on_value_type<ActualLhsType>::type actualLhs = LhsProductTraits::extract(lhs);
91
91
 
@@ -98,8 +98,8 @@ struct triangular_solver_selector<Lhs,Rhs,Side,Mode,NoUnrolling,Dynamic>
98
98
  BlockingType blocking(rhs.rows(), rhs.cols(), size, 1, false);
99
99
 
100
100
  triangular_solve_matrix<Scalar,Index,Side,Mode,LhsProductTraits::NeedToConjugate,(int(Lhs::Flags) & RowMajorBit) ? RowMajor : ColMajor,
101
- (Rhs::Flags&RowMajorBit) ? RowMajor : ColMajor>
102
- ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.outerStride(), blocking);
101
+ (Rhs::Flags&RowMajorBit) ? RowMajor : ColMajor, Rhs::InnerStrideAtCompileTime>
102
+ ::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking);
103
103
  }
104
104
  };
105
105
 
@@ -118,7 +118,7 @@ struct triangular_solver_unroller<Lhs,Rhs,Mode,LoopIndex,Size,false> {
118
118
  DiagIndex = IsLower ? LoopIndex : Size - LoopIndex - 1,
119
119
  StartIndex = IsLower ? 0 : DiagIndex+1
120
120
  };
121
- static void run(const Lhs& lhs, Rhs& rhs)
121
+ static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
122
122
  {
123
123
  if (LoopIndex>0)
124
124
  rhs.coeffRef(DiagIndex) -= lhs.row(DiagIndex).template segment<LoopIndex>(StartIndex).transpose()
@@ -133,22 +133,22 @@ struct triangular_solver_unroller<Lhs,Rhs,Mode,LoopIndex,Size,false> {
133
133
 
134
134
  template<typename Lhs, typename Rhs, int Mode, int LoopIndex, int Size>
135
135
  struct triangular_solver_unroller<Lhs,Rhs,Mode,LoopIndex,Size,true> {
136
- static void run(const Lhs&, Rhs&) {}
136
+ static EIGEN_DEVICE_FUNC void run(const Lhs&, Rhs&) {}
137
137
  };
138
138
 
139
139
  template<typename Lhs, typename Rhs, int Mode>
140
140
  struct triangular_solver_selector<Lhs,Rhs,OnTheLeft,Mode,CompleteUnrolling,1> {
141
- static void run(const Lhs& lhs, Rhs& rhs)
141
+ static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
142
142
  { triangular_solver_unroller<Lhs,Rhs,Mode,0,Rhs::SizeAtCompileTime>::run(lhs,rhs); }
143
143
  };
144
144
 
145
145
  template<typename Lhs, typename Rhs, int Mode>
146
146
  struct triangular_solver_selector<Lhs,Rhs,OnTheRight,Mode,CompleteUnrolling,1> {
147
- static void run(const Lhs& lhs, Rhs& rhs)
147
+ static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
148
148
  {
149
149
  Transpose<const Lhs> trLhs(lhs);
150
150
  Transpose<Rhs> trRhs(rhs);
151
-
151
+
152
152
  triangular_solver_unroller<Transpose<const Lhs>,Transpose<Rhs>,
153
153
  ((Mode&Upper)==Upper ? Lower : Upper) | (Mode&UnitDiag),
154
154
  0,Rhs::SizeAtCompileTime>::run(trLhs,trRhs);
@@ -164,11 +164,11 @@ struct triangular_solver_selector<Lhs,Rhs,OnTheRight,Mode,CompleteUnrolling,1> {
164
164
  #ifndef EIGEN_PARSED_BY_DOXYGEN
165
165
  template<typename MatrixType, unsigned int Mode>
166
166
  template<int Side, typename OtherDerived>
167
- void TriangularViewImpl<MatrixType,Mode,Dense>::solveInPlace(const MatrixBase<OtherDerived>& _other) const
167
+ EIGEN_DEVICE_FUNC void TriangularViewImpl<MatrixType,Mode,Dense>::solveInPlace(const MatrixBase<OtherDerived>& _other) const
168
168
  {
169
169
  OtherDerived& other = _other.const_cast_derived();
170
170
  eigen_assert( derived().cols() == derived().rows() && ((Side==OnTheLeft && derived().cols() == other.rows()) || (Side==OnTheRight && derived().cols() == other.cols())) );
171
- eigen_assert((!(Mode & ZeroDiag)) && bool(Mode & (Upper|Lower)));
171
+ eigen_assert((!(int(Mode) & int(ZeroDiag))) && bool(int(Mode) & (int(Upper) | int(Lower))));
172
172
  // If solving for a 0x0 matrix, nothing to do, simply return.
173
173
  if (derived().cols() == 0)
174
174
  return;
@@ -213,8 +213,8 @@ template<int Side, typename TriangularType, typename Rhs> struct triangular_solv
213
213
  : m_triangularMatrix(tri), m_rhs(rhs)
214
214
  {}
215
215
 
216
- inline Index rows() const { return m_rhs.rows(); }
217
- inline Index cols() const { return m_rhs.cols(); }
216
+ inline EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_rhs.rows(); }
217
+ inline EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
218
218
 
219
219
  template<typename Dest> inline void evalTo(Dest& dst) const
220
220
  {
@@ -14,8 +14,35 @@ namespace Eigen {
14
14
 
15
15
  namespace internal {
16
16
 
17
+ template<typename Derived>
18
+ struct solve_assertion {
19
+ template<bool Transpose_, typename Rhs>
20
+ static void run(const Derived& solver, const Rhs& b) { solver.template _check_solve_assertion<Transpose_>(b); }
21
+ };
22
+
23
+ template<typename Derived>
24
+ struct solve_assertion<Transpose<Derived> >
25
+ {
26
+ typedef Transpose<Derived> type;
27
+
28
+ template<bool Transpose_, typename Rhs>
29
+ static void run(const type& transpose, const Rhs& b)
30
+ {
31
+ internal::solve_assertion<typename internal::remove_all<Derived>::type>::template run<true>(transpose.nestedExpression(), b);
32
+ }
33
+ };
17
34
 
35
+ template<typename Scalar, typename Derived>
36
+ struct solve_assertion<CwiseUnaryOp<Eigen::internal::scalar_conjugate_op<Scalar>, const Transpose<Derived> > >
37
+ {
38
+ typedef CwiseUnaryOp<Eigen::internal::scalar_conjugate_op<Scalar>, const Transpose<Derived> > type;
18
39
 
40
+ template<bool Transpose_, typename Rhs>
41
+ static void run(const type& adjoint, const Rhs& b)
42
+ {
43
+ internal::solve_assertion<typename internal::remove_all<Transpose<Derived> >::type>::template run<true>(adjoint.nestedExpression(), b);
44
+ }
45
+ };
19
46
  } // end namespace internal
20
47
 
21
48
  /** \class SolverBase
@@ -35,7 +62,7 @@ namespace internal {
35
62
  *
36
63
  * \warning Currently, any other usage of transpose() and adjoint() are not supported and will produce compilation errors.
37
64
  *
38
- * \sa class PartialPivLU, class FullPivLU
65
+ * \sa class PartialPivLU, class FullPivLU, class HouseholderQR, class ColPivHouseholderQR, class FullPivHouseholderQR, class CompleteOrthogonalDecomposition, class LLT, class LDLT, class SVDBase
39
66
  */
40
67
  template<typename Derived>
41
68
  class SolverBase : public EigenBase<Derived>
@@ -46,6 +73,9 @@ class SolverBase : public EigenBase<Derived>
46
73
  typedef typename internal::traits<Derived>::Scalar Scalar;
47
74
  typedef Scalar CoeffReturnType;
48
75
 
76
+ template<typename Derived_>
77
+ friend struct internal::solve_assertion;
78
+
49
79
  enum {
50
80
  RowsAtCompileTime = internal::traits<Derived>::RowsAtCompileTime,
51
81
  ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
@@ -56,7 +86,8 @@ class SolverBase : public EigenBase<Derived>
56
86
  MaxSizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::MaxRowsAtCompileTime,
57
87
  internal::traits<Derived>::MaxColsAtCompileTime>::ret),
58
88
  IsVectorAtCompileTime = internal::traits<Derived>::MaxRowsAtCompileTime == 1
59
- || internal::traits<Derived>::MaxColsAtCompileTime == 1
89
+ || internal::traits<Derived>::MaxColsAtCompileTime == 1,
90
+ NumDimensions = int(MaxSizeAtCompileTime) == 1 ? 0 : bool(IsVectorAtCompileTime) ? 1 : 2
60
91
  };
61
92
 
62
93
  /** Default constructor */
@@ -74,7 +105,7 @@ class SolverBase : public EigenBase<Derived>
74
105
  inline const Solve<Derived, Rhs>
75
106
  solve(const MatrixBase<Rhs>& b) const
76
107
  {
77
- eigen_assert(derived().rows()==b.rows() && "solve(): invalid number of rows of the right hand side matrix b");
108
+ internal::solve_assertion<typename internal::remove_all<Derived>::type>::template run<false>(derived(), b);
78
109
  return Solve<Derived, Rhs>(derived(), b.derived());
79
110
  }
80
111
 
@@ -112,6 +143,13 @@ class SolverBase : public EigenBase<Derived>
112
143
  }
113
144
 
114
145
  protected:
146
+
147
+ template<bool Transpose_, typename Rhs>
148
+ void _check_solve_assertion(const Rhs& b) const {
149
+ EIGEN_ONLY_USED_FOR_DEBUG(b);
150
+ eigen_assert(derived().m_isInitialized && "Solver is not initialized.");
151
+ eigen_assert((Transpose_?derived().cols():derived().rows())==b.rows() && "SolverBase::solve(): invalid number of rows of the right hand side matrix b");
152
+ }
115
153
  };
116
154
 
117
155
  namespace internal {
@@ -50,6 +50,71 @@ inline void stable_norm_kernel(const ExpressionType& bl, Scalar& ssq, Scalar& sc
50
50
  ssq += (bl*invScale).squaredNorm();
51
51
  }
52
52
 
53
+ template<typename VectorType, typename RealScalar>
54
+ void stable_norm_impl_inner_step(const VectorType &vec, RealScalar& ssq, RealScalar& scale, RealScalar& invScale)
55
+ {
56
+ typedef typename VectorType::Scalar Scalar;
57
+ const Index blockSize = 4096;
58
+
59
+ typedef typename internal::nested_eval<VectorType,2>::type VectorTypeCopy;
60
+ typedef typename internal::remove_all<VectorTypeCopy>::type VectorTypeCopyClean;
61
+ const VectorTypeCopy copy(vec);
62
+
63
+ enum {
64
+ CanAlign = ( (int(VectorTypeCopyClean::Flags)&DirectAccessBit)
65
+ || (int(internal::evaluator<VectorTypeCopyClean>::Alignment)>0) // FIXME Alignment)>0 might not be enough
66
+ ) && (blockSize*sizeof(Scalar)*2<EIGEN_STACK_ALLOCATION_LIMIT)
67
+ && (EIGEN_MAX_STATIC_ALIGN_BYTES>0) // if we cannot allocate on the stack, then let's not bother about this optimization
68
+ };
69
+ typedef typename internal::conditional<CanAlign, Ref<const Matrix<Scalar,Dynamic,1,0,blockSize,1>, internal::evaluator<VectorTypeCopyClean>::Alignment>,
70
+ typename VectorTypeCopyClean::ConstSegmentReturnType>::type SegmentWrapper;
71
+ Index n = vec.size();
72
+
73
+ Index bi = internal::first_default_aligned(copy);
74
+ if (bi>0)
75
+ internal::stable_norm_kernel(copy.head(bi), ssq, scale, invScale);
76
+ for (; bi<n; bi+=blockSize)
77
+ internal::stable_norm_kernel(SegmentWrapper(copy.segment(bi,numext::mini(blockSize, n - bi))), ssq, scale, invScale);
78
+ }
79
+
80
+ template<typename VectorType>
81
+ typename VectorType::RealScalar
82
+ stable_norm_impl(const VectorType &vec, typename enable_if<VectorType::IsVectorAtCompileTime>::type* = 0 )
83
+ {
84
+ using std::sqrt;
85
+ using std::abs;
86
+
87
+ Index n = vec.size();
88
+
89
+ if(n==1)
90
+ return abs(vec.coeff(0));
91
+
92
+ typedef typename VectorType::RealScalar RealScalar;
93
+ RealScalar scale(0);
94
+ RealScalar invScale(1);
95
+ RealScalar ssq(0); // sum of squares
96
+
97
+ stable_norm_impl_inner_step(vec, ssq, scale, invScale);
98
+
99
+ return scale * sqrt(ssq);
100
+ }
101
+
102
+ template<typename MatrixType>
103
+ typename MatrixType::RealScalar
104
+ stable_norm_impl(const MatrixType &mat, typename enable_if<!MatrixType::IsVectorAtCompileTime>::type* = 0 )
105
+ {
106
+ using std::sqrt;
107
+
108
+ typedef typename MatrixType::RealScalar RealScalar;
109
+ RealScalar scale(0);
110
+ RealScalar invScale(1);
111
+ RealScalar ssq(0); // sum of squares
112
+
113
+ for(Index j=0; j<mat.outerSize(); ++j)
114
+ stable_norm_impl_inner_step(mat.innerVector(j), ssq, scale, invScale);
115
+ return scale * sqrt(ssq);
116
+ }
117
+
53
118
  template<typename Derived>
54
119
  inline typename NumTraits<typename traits<Derived>::Scalar>::Real
55
120
  blueNorm_impl(const EigenBase<Derived>& _vec)
@@ -58,52 +123,43 @@ blueNorm_impl(const EigenBase<Derived>& _vec)
58
123
  using std::pow;
59
124
  using std::sqrt;
60
125
  using std::abs;
126
+
127
+ // This program calculates the machine-dependent constants
128
+ // bl, b2, slm, s2m, relerr overfl
129
+ // from the "basic" machine-dependent numbers
130
+ // nbig, ibeta, it, iemin, iemax, rbig.
131
+ // The following define the basic machine-dependent constants.
132
+ // For portability, the PORT subprograms "ilmaeh" and "rlmach"
133
+ // are used. For any specific computer, each of the assignment
134
+ // statements can be replaced
135
+ static const int ibeta = std::numeric_limits<RealScalar>::radix; // base for floating-point numbers
136
+ static const int it = NumTraits<RealScalar>::digits(); // number of base-beta digits in mantissa
137
+ static const int iemin = NumTraits<RealScalar>::min_exponent(); // minimum exponent
138
+ static const int iemax = NumTraits<RealScalar>::max_exponent(); // maximum exponent
139
+ static const RealScalar rbig = NumTraits<RealScalar>::highest(); // largest floating-point number
140
+ static const RealScalar b1 = RealScalar(pow(RealScalar(ibeta),RealScalar(-((1-iemin)/2)))); // lower boundary of midrange
141
+ static const RealScalar b2 = RealScalar(pow(RealScalar(ibeta),RealScalar((iemax + 1 - it)/2))); // upper boundary of midrange
142
+ static const RealScalar s1m = RealScalar(pow(RealScalar(ibeta),RealScalar((2-iemin)/2))); // scaling factor for lower range
143
+ static const RealScalar s2m = RealScalar(pow(RealScalar(ibeta),RealScalar(- ((iemax+it)/2)))); // scaling factor for upper range
144
+ static const RealScalar eps = RealScalar(pow(double(ibeta), 1-it));
145
+ static const RealScalar relerr = sqrt(eps); // tolerance for neglecting asml
146
+
61
147
  const Derived& vec(_vec.derived());
62
- static bool initialized = false;
63
- static RealScalar b1, b2, s1m, s2m, rbig, relerr;
64
- if(!initialized)
65
- {
66
- int ibeta, it, iemin, iemax, iexp;
67
- RealScalar eps;
68
- // This program calculates the machine-dependent constants
69
- // bl, b2, slm, s2m, relerr overfl
70
- // from the "basic" machine-dependent numbers
71
- // nbig, ibeta, it, iemin, iemax, rbig.
72
- // The following define the basic machine-dependent constants.
73
- // For portability, the PORT subprograms "ilmaeh" and "rlmach"
74
- // are used. For any specific computer, each of the assignment
75
- // statements can be replaced
76
- ibeta = std::numeric_limits<RealScalar>::radix; // base for floating-point numbers
77
- it = std::numeric_limits<RealScalar>::digits; // number of base-beta digits in mantissa
78
- iemin = std::numeric_limits<RealScalar>::min_exponent; // minimum exponent
79
- iemax = std::numeric_limits<RealScalar>::max_exponent; // maximum exponent
80
- rbig = (std::numeric_limits<RealScalar>::max)(); // largest floating-point number
81
-
82
- iexp = -((1-iemin)/2);
83
- b1 = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // lower boundary of midrange
84
- iexp = (iemax + 1 - it)/2;
85
- b2 = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // upper boundary of midrange
86
-
87
- iexp = (2-iemin)/2;
88
- s1m = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // scaling factor for lower range
89
- iexp = - ((iemax+it)/2);
90
- s2m = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // scaling factor for upper range
91
-
92
- eps = RealScalar(pow(double(ibeta), 1-it));
93
- relerr = sqrt(eps); // tolerance for neglecting asml
94
- initialized = true;
95
- }
96
148
  Index n = vec.size();
97
149
  RealScalar ab2 = b2 / RealScalar(n);
98
150
  RealScalar asml = RealScalar(0);
99
151
  RealScalar amed = RealScalar(0);
100
152
  RealScalar abig = RealScalar(0);
101
- for(typename Derived::InnerIterator it(vec, 0); it; ++it)
153
+
154
+ for(Index j=0; j<vec.outerSize(); ++j)
102
155
  {
103
- RealScalar ax = abs(it.value());
104
- if(ax > ab2) abig += numext::abs2(ax*s2m);
105
- else if(ax < b1) asml += numext::abs2(ax*s1m);
106
- else amed += numext::abs2(ax);
156
+ for(typename Derived::InnerIterator iter(vec, j); iter; ++iter)
157
+ {
158
+ RealScalar ax = abs(iter.value());
159
+ if(ax > ab2) abig += numext::abs2(ax*s2m);
160
+ else if(ax < b1) asml += numext::abs2(ax*s1m);
161
+ else amed += numext::abs2(ax);
162
+ }
107
163
  }
108
164
  if(amed!=amed)
109
165
  return amed; // we got a NaN
@@ -156,36 +212,7 @@ template<typename Derived>
156
212
  inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
157
213
  MatrixBase<Derived>::stableNorm() const
158
214
  {
159
- using std::sqrt;
160
- using std::abs;
161
- const Index blockSize = 4096;
162
- RealScalar scale(0);
163
- RealScalar invScale(1);
164
- RealScalar ssq(0); // sum of square
165
-
166
- typedef typename internal::nested_eval<Derived,2>::type DerivedCopy;
167
- typedef typename internal::remove_all<DerivedCopy>::type DerivedCopyClean;
168
- const DerivedCopy copy(derived());
169
-
170
- enum {
171
- CanAlign = ( (int(DerivedCopyClean::Flags)&DirectAccessBit)
172
- || (int(internal::evaluator<DerivedCopyClean>::Alignment)>0) // FIXME Alignment)>0 might not be enough
173
- ) && (blockSize*sizeof(Scalar)*2<EIGEN_STACK_ALLOCATION_LIMIT)
174
- && (EIGEN_MAX_STATIC_ALIGN_BYTES>0) // if we cannot allocate on the stack, then let's not bother about this optimization
175
- };
176
- typedef typename internal::conditional<CanAlign, Ref<const Matrix<Scalar,Dynamic,1,0,blockSize,1>, internal::evaluator<DerivedCopyClean>::Alignment>,
177
- typename DerivedCopyClean::ConstSegmentReturnType>::type SegmentWrapper;
178
- Index n = size();
179
-
180
- if(n==1)
181
- return abs(this->coeff(0));
182
-
183
- Index bi = internal::first_default_aligned(copy);
184
- if (bi>0)
185
- internal::stable_norm_kernel(copy.head(bi), ssq, scale, invScale);
186
- for (; bi<n; bi+=blockSize)
187
- internal::stable_norm_kernel(SegmentWrapper(copy.segment(bi,numext::mini(blockSize, n - bi))), ssq, scale, invScale);
188
- return scale * sqrt(ssq);
215
+ return internal::stable_norm_impl(derived());
189
216
  }
190
217
 
191
218
  /** \returns the \em l2 norm of \c *this using the Blue's algorithm.
@@ -213,7 +240,10 @@ template<typename Derived>
213
240
  inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
214
241
  MatrixBase<Derived>::hypotNorm() const
215
242
  {
216
- return this->cwiseAbs().redux(internal::scalar_hypot_op<RealScalar>());
243
+ if(size()==1)
244
+ return numext::abs(coeff(0,0));
245
+ else
246
+ return this->cwiseAbs().redux(internal::scalar_hypot_op<RealScalar>());
217
247
  }
218
248
 
219
249
  } // end namespace Eigen