tomoto 0.2.2 → 0.3.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -10,7 +10,7 @@
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#ifndef EIGEN_SELFADJOINTMATRIX_H
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#define EIGEN_SELFADJOINTMATRIX_H
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namespace Eigen {
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namespace Eigen {
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typedef MatrixTypeNestedCleaned NestedExpression;
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typedef typename internal::traits<SelfAdjointView>::Scalar Scalar;
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typedef typename internal::traits<SelfAdjointView>::Scalar Scalar;
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typedef typename MatrixType::StorageIndex StorageIndex;
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typedef typename internal::remove_all<typename MatrixType::ConjugateReturnType>::type MatrixConjugateReturnType;
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typedef SelfAdjointView<typename internal::add_const<MatrixType>::type, UpLo> ConstSelfAdjointView;
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enum {
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Mode = internal::traits<SelfAdjointView>::Mode,
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TransposeMode = ((Mode & Upper) ? Lower : 0) | ((Mode & Lower) ? Upper : 0)
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EIGEN_STATIC_ASSERT(UpLo==Lower || UpLo==Upper,SELFADJOINTVIEW_ACCEPTS_UPPER_AND_LOWER_MODE_ONLY);
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}
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EIGEN_DEVICE_FUNC
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inline Index rows() const { return m_matrix.rows(); }
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EIGEN_DEVICE_FUNC
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inline Index cols() const { return m_matrix.cols(); }
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EIGEN_DEVICE_FUNC
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inline Index outerStride() const { return m_matrix.outerStride(); }
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EIGEN_DEVICE_FUNC
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inline Index innerStride() const { return m_matrix.innerStride(); }
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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inline Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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inline Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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inline Index outerStride() const EIGEN_NOEXCEPT { return m_matrix.outerStride(); }
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
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inline Index innerStride() const EIGEN_NOEXCEPT { return m_matrix.innerStride(); }
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/** \sa MatrixBase::coeff()
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* \warning the coordinates must fit into the referenced triangular part
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{
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return Product<OtherDerived,SelfAdjointView>(lhs.derived(),rhs);
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}
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friend EIGEN_DEVICE_FUNC
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const SelfAdjointView<const EIGEN_SCALAR_BINARYOP_EXPR_RETURN_TYPE(Scalar,MatrixType,product),UpLo>
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operator*(const Scalar& s, const SelfAdjointView& mat)
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inline const ConjugateReturnType conjugate() const
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{ return ConjugateReturnType(m_matrix.conjugate()); }
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/** \returns an expression of the complex conjugate of \c *this if Cond==true,
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*/
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template<bool Cond>
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EIGEN_DEVICE_FUNC
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inline typename internal::conditional<Cond,ConjugateReturnType,ConstSelfAdjointView>::type
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conjugateIf() const
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{
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typedef typename internal::conditional<Cond,ConjugateReturnType,ConstSelfAdjointView>::type ReturnType;
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EIGEN_DEVICE_FUNC
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using Base::m_src;
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{}
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EIGEN_DEVICE_FUNC void assignCoeff(Index row, Index col)
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{
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eigen_internal_assert(row!=col);
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m_functor.assignCoeff(m_dst.coeffRef(row,col), tmp);
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m_functor.assignCoeff(m_dst.coeffRef(col,row), numext::conj(tmp));
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EIGEN_DEVICE_FUNC void assignDiagonalCoeff(Index id)
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Base::assignCoeff(id,id);
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EIGEN_DEVICE_FUNC void assignOppositeCoeff(Index, Index)
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};
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/** This is the const version of MatrixBase::selfadjointView() */
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template<typename Derived>
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template<unsigned int UpLo>
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typename MatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type
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EIGEN_DEVICE_FUNC typename MatrixBase<Derived>::template ConstSelfAdjointViewReturnType<UpLo>::Type
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MatrixBase<Derived>::selfadjointView() const
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{
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*/
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typename MatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type
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EIGEN_DEVICE_FUNC typename MatrixBase<Derived>::template SelfAdjointViewReturnType<UpLo>::Type
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MatrixBase<Derived>::selfadjointView()
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{
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namespace Eigen {
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Solve(const Decomposition &dec, const RhsType &rhs)
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{}
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EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_dec.cols(); }
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EIGEN_DEVICE_FUNC const Decomposition& dec() const { return m_dec; }
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Scalar coeff(Index row, Index col) const;
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} // end
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struct triangular_solve_vector;
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template <typename Scalar, typename Index, int Side, int Mode, bool Conjugate, int TriStorageOrder, int OtherStorageOrder>
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template <typename Scalar, typename Index, int Side, int Mode, bool Conjugate, int TriStorageOrder, int OtherStorageOrder, int OtherInnerStride>
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|
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typedef blas_traits<Lhs> LhsProductTraits;
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static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
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{
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ei_declare_aligned_stack_constructed_variable(RhsScalar,actualRhs,rhs.size(),
|
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|
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|
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|
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static void run(const Lhs& lhs, Rhs& rhs)
|
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static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
|
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{
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@@ -98,8 +98,8 @@ struct triangular_solver_selector<Lhs,Rhs,Side,Mode,NoUnrolling,Dynamic>
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BlockingType blocking(rhs.rows(), rhs.cols(), size, 1, false);
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triangular_solve_matrix<Scalar,Index,Side,Mode,LhsProductTraits::NeedToConjugate,(int(Lhs::Flags) & RowMajorBit) ? RowMajor : ColMajor,
|
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(Rhs::Flags&RowMajorBit) ? RowMajor : ColMajor>
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::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.outerStride(), blocking);
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(Rhs::Flags&RowMajorBit) ? RowMajor : ColMajor, Rhs::InnerStrideAtCompileTime>
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::run(size, othersize, &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &rhs.coeffRef(0,0), rhs.innerStride(), rhs.outerStride(), blocking);
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}
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};
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@@ -118,7 +118,7 @@ struct triangular_solver_unroller<Lhs,Rhs,Mode,LoopIndex,Size,false> {
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DiagIndex = IsLower ? LoopIndex : Size - LoopIndex - 1,
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StartIndex = IsLower ? 0 : DiagIndex+1
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};
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static void run(const Lhs& lhs, Rhs& rhs)
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+
static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
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{
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if (LoopIndex>0)
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rhs.coeffRef(DiagIndex) -= lhs.row(DiagIndex).template segment<LoopIndex>(StartIndex).transpose()
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template<typename Lhs, typename Rhs, int Mode, int LoopIndex, int Size>
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struct triangular_solver_unroller<Lhs,Rhs,Mode,LoopIndex,Size,true> {
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static void run(const Lhs&, Rhs&) {}
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+
static EIGEN_DEVICE_FUNC void run(const Lhs&, Rhs&) {}
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};
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template<typename Lhs, typename Rhs, int Mode>
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struct triangular_solver_selector<Lhs,Rhs,OnTheLeft,Mode,CompleteUnrolling,1> {
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-
static void run(const Lhs& lhs, Rhs& rhs)
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+
static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
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{ triangular_solver_unroller<Lhs,Rhs,Mode,0,Rhs::SizeAtCompileTime>::run(lhs,rhs); }
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};
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template<typename Lhs, typename Rhs, int Mode>
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struct triangular_solver_selector<Lhs,Rhs,OnTheRight,Mode,CompleteUnrolling,1> {
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static void run(const Lhs& lhs, Rhs& rhs)
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+
static EIGEN_DEVICE_FUNC void run(const Lhs& lhs, Rhs& rhs)
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{
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Transpose<const Lhs> trLhs(lhs);
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Transpose<Rhs> trRhs(rhs);
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-
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+
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triangular_solver_unroller<Transpose<const Lhs>,Transpose<Rhs>,
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((Mode&Upper)==Upper ? Lower : Upper) | (Mode&UnitDiag),
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0,Rhs::SizeAtCompileTime>::run(trLhs,trRhs);
|
@@ -164,11 +164,11 @@ struct triangular_solver_selector<Lhs,Rhs,OnTheRight,Mode,CompleteUnrolling,1> {
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#ifndef EIGEN_PARSED_BY_DOXYGEN
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template<typename MatrixType, unsigned int Mode>
|
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template<int Side, typename OtherDerived>
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-
void TriangularViewImpl<MatrixType,Mode,Dense>::solveInPlace(const MatrixBase<OtherDerived>& _other) const
|
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+
EIGEN_DEVICE_FUNC void TriangularViewImpl<MatrixType,Mode,Dense>::solveInPlace(const MatrixBase<OtherDerived>& _other) const
|
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{
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OtherDerived& other = _other.const_cast_derived();
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eigen_assert( derived().cols() == derived().rows() && ((Side==OnTheLeft && derived().cols() == other.rows()) || (Side==OnTheRight && derived().cols() == other.cols())) );
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-
eigen_assert((!(Mode & ZeroDiag)) && bool(Mode & (Upper|Lower)));
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+
eigen_assert((!(int(Mode) & int(ZeroDiag))) && bool(int(Mode) & (int(Upper) | int(Lower))));
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// If solving for a 0x0 matrix, nothing to do, simply return.
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if (derived().cols() == 0)
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return;
|
@@ -213,8 +213,8 @@ template<int Side, typename TriangularType, typename Rhs> struct triangular_solv
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: m_triangularMatrix(tri), m_rhs(rhs)
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{}
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inline Index rows() const { return m_rhs.rows(); }
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inline Index cols() const { return m_rhs.cols(); }
|
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+
inline EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_rhs.rows(); }
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+
inline EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_rhs.cols(); }
|
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template<typename Dest> inline void evalTo(Dest& dst) const
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{
|
@@ -14,8 +14,35 @@ namespace Eigen {
|
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14
14
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15
15
|
namespace internal {
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16
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+
template<typename Derived>
|
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+
struct solve_assertion {
|
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+
template<bool Transpose_, typename Rhs>
|
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+
static void run(const Derived& solver, const Rhs& b) { solver.template _check_solve_assertion<Transpose_>(b); }
|
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|
+
};
|
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+
|
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+
template<typename Derived>
|
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|
+
struct solve_assertion<Transpose<Derived> >
|
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|
+
{
|
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|
+
typedef Transpose<Derived> type;
|
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|
+
|
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+
template<bool Transpose_, typename Rhs>
|
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|
+
static void run(const type& transpose, const Rhs& b)
|
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|
+
{
|
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|
+
internal::solve_assertion<typename internal::remove_all<Derived>::type>::template run<true>(transpose.nestedExpression(), b);
|
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|
+
}
|
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|
+
};
|
17
34
|
|
35
|
+
template<typename Scalar, typename Derived>
|
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|
+
struct solve_assertion<CwiseUnaryOp<Eigen::internal::scalar_conjugate_op<Scalar>, const Transpose<Derived> > >
|
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|
+
{
|
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|
+
typedef CwiseUnaryOp<Eigen::internal::scalar_conjugate_op<Scalar>, const Transpose<Derived> > type;
|
18
39
|
|
40
|
+
template<bool Transpose_, typename Rhs>
|
41
|
+
static void run(const type& adjoint, const Rhs& b)
|
42
|
+
{
|
43
|
+
internal::solve_assertion<typename internal::remove_all<Transpose<Derived> >::type>::template run<true>(adjoint.nestedExpression(), b);
|
44
|
+
}
|
45
|
+
};
|
19
46
|
} // end namespace internal
|
20
47
|
|
21
48
|
/** \class SolverBase
|
@@ -35,7 +62,7 @@ namespace internal {
|
|
35
62
|
*
|
36
63
|
* \warning Currently, any other usage of transpose() and adjoint() are not supported and will produce compilation errors.
|
37
64
|
*
|
38
|
-
* \sa class PartialPivLU, class FullPivLU
|
65
|
+
* \sa class PartialPivLU, class FullPivLU, class HouseholderQR, class ColPivHouseholderQR, class FullPivHouseholderQR, class CompleteOrthogonalDecomposition, class LLT, class LDLT, class SVDBase
|
39
66
|
*/
|
40
67
|
template<typename Derived>
|
41
68
|
class SolverBase : public EigenBase<Derived>
|
@@ -46,6 +73,9 @@ class SolverBase : public EigenBase<Derived>
|
|
46
73
|
typedef typename internal::traits<Derived>::Scalar Scalar;
|
47
74
|
typedef Scalar CoeffReturnType;
|
48
75
|
|
76
|
+
template<typename Derived_>
|
77
|
+
friend struct internal::solve_assertion;
|
78
|
+
|
49
79
|
enum {
|
50
80
|
RowsAtCompileTime = internal::traits<Derived>::RowsAtCompileTime,
|
51
81
|
ColsAtCompileTime = internal::traits<Derived>::ColsAtCompileTime,
|
@@ -56,7 +86,8 @@ class SolverBase : public EigenBase<Derived>
|
|
56
86
|
MaxSizeAtCompileTime = (internal::size_at_compile_time<internal::traits<Derived>::MaxRowsAtCompileTime,
|
57
87
|
internal::traits<Derived>::MaxColsAtCompileTime>::ret),
|
58
88
|
IsVectorAtCompileTime = internal::traits<Derived>::MaxRowsAtCompileTime == 1
|
59
|
-
|| internal::traits<Derived>::MaxColsAtCompileTime == 1
|
89
|
+
|| internal::traits<Derived>::MaxColsAtCompileTime == 1,
|
90
|
+
NumDimensions = int(MaxSizeAtCompileTime) == 1 ? 0 : bool(IsVectorAtCompileTime) ? 1 : 2
|
60
91
|
};
|
61
92
|
|
62
93
|
/** Default constructor */
|
@@ -74,7 +105,7 @@ class SolverBase : public EigenBase<Derived>
|
|
74
105
|
inline const Solve<Derived, Rhs>
|
75
106
|
solve(const MatrixBase<Rhs>& b) const
|
76
107
|
{
|
77
|
-
|
108
|
+
internal::solve_assertion<typename internal::remove_all<Derived>::type>::template run<false>(derived(), b);
|
78
109
|
return Solve<Derived, Rhs>(derived(), b.derived());
|
79
110
|
}
|
80
111
|
|
@@ -112,6 +143,13 @@ class SolverBase : public EigenBase<Derived>
|
|
112
143
|
}
|
113
144
|
|
114
145
|
protected:
|
146
|
+
|
147
|
+
template<bool Transpose_, typename Rhs>
|
148
|
+
void _check_solve_assertion(const Rhs& b) const {
|
149
|
+
EIGEN_ONLY_USED_FOR_DEBUG(b);
|
150
|
+
eigen_assert(derived().m_isInitialized && "Solver is not initialized.");
|
151
|
+
eigen_assert((Transpose_?derived().cols():derived().rows())==b.rows() && "SolverBase::solve(): invalid number of rows of the right hand side matrix b");
|
152
|
+
}
|
115
153
|
};
|
116
154
|
|
117
155
|
namespace internal {
|
@@ -50,6 +50,71 @@ inline void stable_norm_kernel(const ExpressionType& bl, Scalar& ssq, Scalar& sc
|
|
50
50
|
ssq += (bl*invScale).squaredNorm();
|
51
51
|
}
|
52
52
|
|
53
|
+
template<typename VectorType, typename RealScalar>
|
54
|
+
void stable_norm_impl_inner_step(const VectorType &vec, RealScalar& ssq, RealScalar& scale, RealScalar& invScale)
|
55
|
+
{
|
56
|
+
typedef typename VectorType::Scalar Scalar;
|
57
|
+
const Index blockSize = 4096;
|
58
|
+
|
59
|
+
typedef typename internal::nested_eval<VectorType,2>::type VectorTypeCopy;
|
60
|
+
typedef typename internal::remove_all<VectorTypeCopy>::type VectorTypeCopyClean;
|
61
|
+
const VectorTypeCopy copy(vec);
|
62
|
+
|
63
|
+
enum {
|
64
|
+
CanAlign = ( (int(VectorTypeCopyClean::Flags)&DirectAccessBit)
|
65
|
+
|| (int(internal::evaluator<VectorTypeCopyClean>::Alignment)>0) // FIXME Alignment)>0 might not be enough
|
66
|
+
) && (blockSize*sizeof(Scalar)*2<EIGEN_STACK_ALLOCATION_LIMIT)
|
67
|
+
&& (EIGEN_MAX_STATIC_ALIGN_BYTES>0) // if we cannot allocate on the stack, then let's not bother about this optimization
|
68
|
+
};
|
69
|
+
typedef typename internal::conditional<CanAlign, Ref<const Matrix<Scalar,Dynamic,1,0,blockSize,1>, internal::evaluator<VectorTypeCopyClean>::Alignment>,
|
70
|
+
typename VectorTypeCopyClean::ConstSegmentReturnType>::type SegmentWrapper;
|
71
|
+
Index n = vec.size();
|
72
|
+
|
73
|
+
Index bi = internal::first_default_aligned(copy);
|
74
|
+
if (bi>0)
|
75
|
+
internal::stable_norm_kernel(copy.head(bi), ssq, scale, invScale);
|
76
|
+
for (; bi<n; bi+=blockSize)
|
77
|
+
internal::stable_norm_kernel(SegmentWrapper(copy.segment(bi,numext::mini(blockSize, n - bi))), ssq, scale, invScale);
|
78
|
+
}
|
79
|
+
|
80
|
+
template<typename VectorType>
|
81
|
+
typename VectorType::RealScalar
|
82
|
+
stable_norm_impl(const VectorType &vec, typename enable_if<VectorType::IsVectorAtCompileTime>::type* = 0 )
|
83
|
+
{
|
84
|
+
using std::sqrt;
|
85
|
+
using std::abs;
|
86
|
+
|
87
|
+
Index n = vec.size();
|
88
|
+
|
89
|
+
if(n==1)
|
90
|
+
return abs(vec.coeff(0));
|
91
|
+
|
92
|
+
typedef typename VectorType::RealScalar RealScalar;
|
93
|
+
RealScalar scale(0);
|
94
|
+
RealScalar invScale(1);
|
95
|
+
RealScalar ssq(0); // sum of squares
|
96
|
+
|
97
|
+
stable_norm_impl_inner_step(vec, ssq, scale, invScale);
|
98
|
+
|
99
|
+
return scale * sqrt(ssq);
|
100
|
+
}
|
101
|
+
|
102
|
+
template<typename MatrixType>
|
103
|
+
typename MatrixType::RealScalar
|
104
|
+
stable_norm_impl(const MatrixType &mat, typename enable_if<!MatrixType::IsVectorAtCompileTime>::type* = 0 )
|
105
|
+
{
|
106
|
+
using std::sqrt;
|
107
|
+
|
108
|
+
typedef typename MatrixType::RealScalar RealScalar;
|
109
|
+
RealScalar scale(0);
|
110
|
+
RealScalar invScale(1);
|
111
|
+
RealScalar ssq(0); // sum of squares
|
112
|
+
|
113
|
+
for(Index j=0; j<mat.outerSize(); ++j)
|
114
|
+
stable_norm_impl_inner_step(mat.innerVector(j), ssq, scale, invScale);
|
115
|
+
return scale * sqrt(ssq);
|
116
|
+
}
|
117
|
+
|
53
118
|
template<typename Derived>
|
54
119
|
inline typename NumTraits<typename traits<Derived>::Scalar>::Real
|
55
120
|
blueNorm_impl(const EigenBase<Derived>& _vec)
|
@@ -58,52 +123,43 @@ blueNorm_impl(const EigenBase<Derived>& _vec)
|
|
58
123
|
using std::pow;
|
59
124
|
using std::sqrt;
|
60
125
|
using std::abs;
|
126
|
+
|
127
|
+
// This program calculates the machine-dependent constants
|
128
|
+
// bl, b2, slm, s2m, relerr overfl
|
129
|
+
// from the "basic" machine-dependent numbers
|
130
|
+
// nbig, ibeta, it, iemin, iemax, rbig.
|
131
|
+
// The following define the basic machine-dependent constants.
|
132
|
+
// For portability, the PORT subprograms "ilmaeh" and "rlmach"
|
133
|
+
// are used. For any specific computer, each of the assignment
|
134
|
+
// statements can be replaced
|
135
|
+
static const int ibeta = std::numeric_limits<RealScalar>::radix; // base for floating-point numbers
|
136
|
+
static const int it = NumTraits<RealScalar>::digits(); // number of base-beta digits in mantissa
|
137
|
+
static const int iemin = NumTraits<RealScalar>::min_exponent(); // minimum exponent
|
138
|
+
static const int iemax = NumTraits<RealScalar>::max_exponent(); // maximum exponent
|
139
|
+
static const RealScalar rbig = NumTraits<RealScalar>::highest(); // largest floating-point number
|
140
|
+
static const RealScalar b1 = RealScalar(pow(RealScalar(ibeta),RealScalar(-((1-iemin)/2)))); // lower boundary of midrange
|
141
|
+
static const RealScalar b2 = RealScalar(pow(RealScalar(ibeta),RealScalar((iemax + 1 - it)/2))); // upper boundary of midrange
|
142
|
+
static const RealScalar s1m = RealScalar(pow(RealScalar(ibeta),RealScalar((2-iemin)/2))); // scaling factor for lower range
|
143
|
+
static const RealScalar s2m = RealScalar(pow(RealScalar(ibeta),RealScalar(- ((iemax+it)/2)))); // scaling factor for upper range
|
144
|
+
static const RealScalar eps = RealScalar(pow(double(ibeta), 1-it));
|
145
|
+
static const RealScalar relerr = sqrt(eps); // tolerance for neglecting asml
|
146
|
+
|
61
147
|
const Derived& vec(_vec.derived());
|
62
|
-
static bool initialized = false;
|
63
|
-
static RealScalar b1, b2, s1m, s2m, rbig, relerr;
|
64
|
-
if(!initialized)
|
65
|
-
{
|
66
|
-
int ibeta, it, iemin, iemax, iexp;
|
67
|
-
RealScalar eps;
|
68
|
-
// This program calculates the machine-dependent constants
|
69
|
-
// bl, b2, slm, s2m, relerr overfl
|
70
|
-
// from the "basic" machine-dependent numbers
|
71
|
-
// nbig, ibeta, it, iemin, iemax, rbig.
|
72
|
-
// The following define the basic machine-dependent constants.
|
73
|
-
// For portability, the PORT subprograms "ilmaeh" and "rlmach"
|
74
|
-
// are used. For any specific computer, each of the assignment
|
75
|
-
// statements can be replaced
|
76
|
-
ibeta = std::numeric_limits<RealScalar>::radix; // base for floating-point numbers
|
77
|
-
it = std::numeric_limits<RealScalar>::digits; // number of base-beta digits in mantissa
|
78
|
-
iemin = std::numeric_limits<RealScalar>::min_exponent; // minimum exponent
|
79
|
-
iemax = std::numeric_limits<RealScalar>::max_exponent; // maximum exponent
|
80
|
-
rbig = (std::numeric_limits<RealScalar>::max)(); // largest floating-point number
|
81
|
-
|
82
|
-
iexp = -((1-iemin)/2);
|
83
|
-
b1 = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // lower boundary of midrange
|
84
|
-
iexp = (iemax + 1 - it)/2;
|
85
|
-
b2 = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // upper boundary of midrange
|
86
|
-
|
87
|
-
iexp = (2-iemin)/2;
|
88
|
-
s1m = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // scaling factor for lower range
|
89
|
-
iexp = - ((iemax+it)/2);
|
90
|
-
s2m = RealScalar(pow(RealScalar(ibeta),RealScalar(iexp))); // scaling factor for upper range
|
91
|
-
|
92
|
-
eps = RealScalar(pow(double(ibeta), 1-it));
|
93
|
-
relerr = sqrt(eps); // tolerance for neglecting asml
|
94
|
-
initialized = true;
|
95
|
-
}
|
96
148
|
Index n = vec.size();
|
97
149
|
RealScalar ab2 = b2 / RealScalar(n);
|
98
150
|
RealScalar asml = RealScalar(0);
|
99
151
|
RealScalar amed = RealScalar(0);
|
100
152
|
RealScalar abig = RealScalar(0);
|
101
|
-
|
153
|
+
|
154
|
+
for(Index j=0; j<vec.outerSize(); ++j)
|
102
155
|
{
|
103
|
-
|
104
|
-
|
105
|
-
|
106
|
-
|
156
|
+
for(typename Derived::InnerIterator iter(vec, j); iter; ++iter)
|
157
|
+
{
|
158
|
+
RealScalar ax = abs(iter.value());
|
159
|
+
if(ax > ab2) abig += numext::abs2(ax*s2m);
|
160
|
+
else if(ax < b1) asml += numext::abs2(ax*s1m);
|
161
|
+
else amed += numext::abs2(ax);
|
162
|
+
}
|
107
163
|
}
|
108
164
|
if(amed!=amed)
|
109
165
|
return amed; // we got a NaN
|
@@ -156,36 +212,7 @@ template<typename Derived>
|
|
156
212
|
inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
|
157
213
|
MatrixBase<Derived>::stableNorm() const
|
158
214
|
{
|
159
|
-
|
160
|
-
using std::abs;
|
161
|
-
const Index blockSize = 4096;
|
162
|
-
RealScalar scale(0);
|
163
|
-
RealScalar invScale(1);
|
164
|
-
RealScalar ssq(0); // sum of square
|
165
|
-
|
166
|
-
typedef typename internal::nested_eval<Derived,2>::type DerivedCopy;
|
167
|
-
typedef typename internal::remove_all<DerivedCopy>::type DerivedCopyClean;
|
168
|
-
const DerivedCopy copy(derived());
|
169
|
-
|
170
|
-
enum {
|
171
|
-
CanAlign = ( (int(DerivedCopyClean::Flags)&DirectAccessBit)
|
172
|
-
|| (int(internal::evaluator<DerivedCopyClean>::Alignment)>0) // FIXME Alignment)>0 might not be enough
|
173
|
-
) && (blockSize*sizeof(Scalar)*2<EIGEN_STACK_ALLOCATION_LIMIT)
|
174
|
-
&& (EIGEN_MAX_STATIC_ALIGN_BYTES>0) // if we cannot allocate on the stack, then let's not bother about this optimization
|
175
|
-
};
|
176
|
-
typedef typename internal::conditional<CanAlign, Ref<const Matrix<Scalar,Dynamic,1,0,blockSize,1>, internal::evaluator<DerivedCopyClean>::Alignment>,
|
177
|
-
typename DerivedCopyClean::ConstSegmentReturnType>::type SegmentWrapper;
|
178
|
-
Index n = size();
|
179
|
-
|
180
|
-
if(n==1)
|
181
|
-
return abs(this->coeff(0));
|
182
|
-
|
183
|
-
Index bi = internal::first_default_aligned(copy);
|
184
|
-
if (bi>0)
|
185
|
-
internal::stable_norm_kernel(copy.head(bi), ssq, scale, invScale);
|
186
|
-
for (; bi<n; bi+=blockSize)
|
187
|
-
internal::stable_norm_kernel(SegmentWrapper(copy.segment(bi,numext::mini(blockSize, n - bi))), ssq, scale, invScale);
|
188
|
-
return scale * sqrt(ssq);
|
215
|
+
return internal::stable_norm_impl(derived());
|
189
216
|
}
|
190
217
|
|
191
218
|
/** \returns the \em l2 norm of \c *this using the Blue's algorithm.
|
@@ -213,7 +240,10 @@ template<typename Derived>
|
|
213
240
|
inline typename NumTraits<typename internal::traits<Derived>::Scalar>::Real
|
214
241
|
MatrixBase<Derived>::hypotNorm() const
|
215
242
|
{
|
216
|
-
|
243
|
+
if(size()==1)
|
244
|
+
return numext::abs(coeff(0,0));
|
245
|
+
else
|
246
|
+
return this->cwiseAbs().redux(internal::scalar_hypot_op<RealScalar>());
|
217
247
|
}
|
218
248
|
|
219
249
|
} // end namespace Eigen
|