tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -0,0 +1,413 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ //
6
+ // This Source Code Form is subject to the terms of the Mozilla
7
+ // Public License v. 2.0. If a copy of the MPL was not distributed
8
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
+
10
+ #ifndef EIGEN_ARITHMETIC_SEQUENCE_H
11
+ #define EIGEN_ARITHMETIC_SEQUENCE_H
12
+
13
+ namespace Eigen {
14
+
15
+ namespace internal {
16
+
17
+ #if (!EIGEN_HAS_CXX11) || !((!EIGEN_COMP_GNUC) || EIGEN_COMP_GNUC>=48)
18
+ template<typename T> struct aseq_negate {};
19
+
20
+ template<> struct aseq_negate<Index> {
21
+ typedef Index type;
22
+ };
23
+
24
+ template<int N> struct aseq_negate<FixedInt<N> > {
25
+ typedef FixedInt<-N> type;
26
+ };
27
+
28
+ // Compilation error in the following case:
29
+ template<> struct aseq_negate<FixedInt<DynamicIndex> > {};
30
+
31
+ template<typename FirstType,typename SizeType,typename IncrType,
32
+ bool FirstIsSymbolic=symbolic::is_symbolic<FirstType>::value,
33
+ bool SizeIsSymbolic =symbolic::is_symbolic<SizeType>::value>
34
+ struct aseq_reverse_first_type {
35
+ typedef Index type;
36
+ };
37
+
38
+ template<typename FirstType,typename SizeType,typename IncrType>
39
+ struct aseq_reverse_first_type<FirstType,SizeType,IncrType,true,true> {
40
+ typedef symbolic::AddExpr<FirstType,
41
+ symbolic::ProductExpr<symbolic::AddExpr<SizeType,symbolic::ValueExpr<FixedInt<-1> > >,
42
+ symbolic::ValueExpr<IncrType> >
43
+ > type;
44
+ };
45
+
46
+ template<typename SizeType,typename IncrType,typename EnableIf = void>
47
+ struct aseq_reverse_first_type_aux {
48
+ typedef Index type;
49
+ };
50
+
51
+ template<typename SizeType,typename IncrType>
52
+ struct aseq_reverse_first_type_aux<SizeType,IncrType,typename internal::enable_if<bool((SizeType::value+IncrType::value)|0x1)>::type> {
53
+ typedef FixedInt<(SizeType::value-1)*IncrType::value> type;
54
+ };
55
+
56
+ template<typename FirstType,typename SizeType,typename IncrType>
57
+ struct aseq_reverse_first_type<FirstType,SizeType,IncrType,true,false> {
58
+ typedef typename aseq_reverse_first_type_aux<SizeType,IncrType>::type Aux;
59
+ typedef symbolic::AddExpr<FirstType,symbolic::ValueExpr<Aux> > type;
60
+ };
61
+
62
+ template<typename FirstType,typename SizeType,typename IncrType>
63
+ struct aseq_reverse_first_type<FirstType,SizeType,IncrType,false,true> {
64
+ typedef symbolic::AddExpr<symbolic::ProductExpr<symbolic::AddExpr<SizeType,symbolic::ValueExpr<FixedInt<-1> > >,
65
+ symbolic::ValueExpr<IncrType> >,
66
+ symbolic::ValueExpr<> > type;
67
+ };
68
+ #endif
69
+
70
+ // Helper to cleanup the type of the increment:
71
+ template<typename T> struct cleanup_seq_incr {
72
+ typedef typename cleanup_index_type<T,DynamicIndex>::type type;
73
+ };
74
+
75
+ }
76
+
77
+ //--------------------------------------------------------------------------------
78
+ // seq(first,last,incr) and seqN(first,size,incr)
79
+ //--------------------------------------------------------------------------------
80
+
81
+ template<typename FirstType=Index,typename SizeType=Index,typename IncrType=internal::FixedInt<1> >
82
+ class ArithmeticSequence;
83
+
84
+ template<typename FirstType,typename SizeType,typename IncrType>
85
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,
86
+ typename internal::cleanup_index_type<SizeType>::type,
87
+ typename internal::cleanup_seq_incr<IncrType>::type >
88
+ seqN(FirstType first, SizeType size, IncrType incr);
89
+
90
+ /** \class ArithmeticSequence
91
+ * \ingroup Core_Module
92
+ *
93
+ * This class represents an arithmetic progression \f$ a_0, a_1, a_2, ..., a_{n-1}\f$ defined by
94
+ * its \em first value \f$ a_0 \f$, its \em size (aka length) \em n, and the \em increment (aka stride)
95
+ * that is equal to \f$ a_{i+1}-a_{i}\f$ for any \em i.
96
+ *
97
+ * It is internally used as the return type of the Eigen::seq and Eigen::seqN functions, and as the input arguments
98
+ * of DenseBase::operator()(const RowIndices&, const ColIndices&), and most of the time this is the
99
+ * only way it is used.
100
+ *
101
+ * \tparam FirstType type of the first element, usually an Index,
102
+ * but internally it can be a symbolic expression
103
+ * \tparam SizeType type representing the size of the sequence, usually an Index
104
+ * or a compile time integral constant. Internally, it can also be a symbolic expression
105
+ * \tparam IncrType type of the increment, can be a runtime Index, or a compile time integral constant (default is compile-time 1)
106
+ *
107
+ * \sa Eigen::seq, Eigen::seqN, DenseBase::operator()(const RowIndices&, const ColIndices&), class IndexedView
108
+ */
109
+ template<typename FirstType,typename SizeType,typename IncrType>
110
+ class ArithmeticSequence
111
+ {
112
+ public:
113
+ ArithmeticSequence(FirstType first, SizeType size) : m_first(first), m_size(size) {}
114
+ ArithmeticSequence(FirstType first, SizeType size, IncrType incr) : m_first(first), m_size(size), m_incr(incr) {}
115
+
116
+ enum {
117
+ SizeAtCompileTime = internal::get_fixed_value<SizeType>::value,
118
+ IncrAtCompileTime = internal::get_fixed_value<IncrType,DynamicIndex>::value
119
+ };
120
+
121
+ /** \returns the size, i.e., number of elements, of the sequence */
122
+ Index size() const { return m_size; }
123
+
124
+ /** \returns the first element \f$ a_0 \f$ in the sequence */
125
+ Index first() const { return m_first; }
126
+
127
+ /** \returns the value \f$ a_i \f$ at index \a i in the sequence. */
128
+ Index operator[](Index i) const { return m_first + i * m_incr; }
129
+
130
+ const FirstType& firstObject() const { return m_first; }
131
+ const SizeType& sizeObject() const { return m_size; }
132
+ const IncrType& incrObject() const { return m_incr; }
133
+
134
+ protected:
135
+ FirstType m_first;
136
+ SizeType m_size;
137
+ IncrType m_incr;
138
+
139
+ public:
140
+
141
+ #if EIGEN_HAS_CXX11 && ((!EIGEN_COMP_GNUC) || EIGEN_COMP_GNUC>=48)
142
+ auto reverse() const -> decltype(Eigen::seqN(m_first+(m_size+fix<-1>())*m_incr,m_size,-m_incr)) {
143
+ return seqN(m_first+(m_size+fix<-1>())*m_incr,m_size,-m_incr);
144
+ }
145
+ #else
146
+ protected:
147
+ typedef typename internal::aseq_negate<IncrType>::type ReverseIncrType;
148
+ typedef typename internal::aseq_reverse_first_type<FirstType,SizeType,IncrType>::type ReverseFirstType;
149
+ public:
150
+ ArithmeticSequence<ReverseFirstType,SizeType,ReverseIncrType>
151
+ reverse() const {
152
+ return seqN(m_first+(m_size+fix<-1>())*m_incr,m_size,-m_incr);
153
+ }
154
+ #endif
155
+ };
156
+
157
+ /** \returns an ArithmeticSequence starting at \a first, of length \a size, and increment \a incr
158
+ *
159
+ * \sa seqN(FirstType,SizeType), seq(FirstType,LastType,IncrType) */
160
+ template<typename FirstType,typename SizeType,typename IncrType>
161
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,typename internal::cleanup_index_type<SizeType>::type,typename internal::cleanup_seq_incr<IncrType>::type >
162
+ seqN(FirstType first, SizeType size, IncrType incr) {
163
+ return ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,typename internal::cleanup_index_type<SizeType>::type,typename internal::cleanup_seq_incr<IncrType>::type>(first,size,incr);
164
+ }
165
+
166
+ /** \returns an ArithmeticSequence starting at \a first, of length \a size, and unit increment
167
+ *
168
+ * \sa seqN(FirstType,SizeType,IncrType), seq(FirstType,LastType) */
169
+ template<typename FirstType,typename SizeType>
170
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,typename internal::cleanup_index_type<SizeType>::type >
171
+ seqN(FirstType first, SizeType size) {
172
+ return ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,typename internal::cleanup_index_type<SizeType>::type>(first,size);
173
+ }
174
+
175
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
176
+
177
+ /** \returns an ArithmeticSequence starting at \a f, up (or down) to \a l, and with positive (or negative) increment \a incr
178
+ *
179
+ * It is essentially an alias to:
180
+ * \code
181
+ * seqN(f, (l-f+incr)/incr, incr);
182
+ * \endcode
183
+ *
184
+ * \sa seqN(FirstType,SizeType,IncrType), seq(FirstType,LastType)
185
+ */
186
+ template<typename FirstType,typename LastType, typename IncrType>
187
+ auto seq(FirstType f, LastType l, IncrType incr);
188
+
189
+ /** \returns an ArithmeticSequence starting at \a f, up (or down) to \a l, and unit increment
190
+ *
191
+ * It is essentially an alias to:
192
+ * \code
193
+ * seqN(f,l-f+1);
194
+ * \endcode
195
+ *
196
+ * \sa seqN(FirstType,SizeType), seq(FirstType,LastType,IncrType)
197
+ */
198
+ template<typename FirstType,typename LastType>
199
+ auto seq(FirstType f, LastType l);
200
+
201
+ #else // EIGEN_PARSED_BY_DOXYGEN
202
+
203
+ #if EIGEN_HAS_CXX11
204
+ template<typename FirstType,typename LastType>
205
+ auto seq(FirstType f, LastType l) -> decltype(seqN(typename internal::cleanup_index_type<FirstType>::type(f),
206
+ ( typename internal::cleanup_index_type<LastType>::type(l)
207
+ - typename internal::cleanup_index_type<FirstType>::type(f)+fix<1>())))
208
+ {
209
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),
210
+ (typename internal::cleanup_index_type<LastType>::type(l)
211
+ -typename internal::cleanup_index_type<FirstType>::type(f)+fix<1>()));
212
+ }
213
+
214
+ template<typename FirstType,typename LastType, typename IncrType>
215
+ auto seq(FirstType f, LastType l, IncrType incr)
216
+ -> decltype(seqN(typename internal::cleanup_index_type<FirstType>::type(f),
217
+ ( typename internal::cleanup_index_type<LastType>::type(l)
218
+ - typename internal::cleanup_index_type<FirstType>::type(f)+typename internal::cleanup_seq_incr<IncrType>::type(incr)
219
+ ) / typename internal::cleanup_seq_incr<IncrType>::type(incr),
220
+ typename internal::cleanup_seq_incr<IncrType>::type(incr)))
221
+ {
222
+ typedef typename internal::cleanup_seq_incr<IncrType>::type CleanedIncrType;
223
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),
224
+ ( typename internal::cleanup_index_type<LastType>::type(l)
225
+ -typename internal::cleanup_index_type<FirstType>::type(f)+CleanedIncrType(incr)) / CleanedIncrType(incr),
226
+ CleanedIncrType(incr));
227
+ }
228
+
229
+ #else // EIGEN_HAS_CXX11
230
+
231
+ template<typename FirstType,typename LastType>
232
+ typename internal::enable_if<!(symbolic::is_symbolic<FirstType>::value || symbolic::is_symbolic<LastType>::value),
233
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,Index> >::type
234
+ seq(FirstType f, LastType l)
235
+ {
236
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),
237
+ Index((typename internal::cleanup_index_type<LastType>::type(l)-typename internal::cleanup_index_type<FirstType>::type(f)+fix<1>())));
238
+ }
239
+
240
+ template<typename FirstTypeDerived,typename LastType>
241
+ typename internal::enable_if<!symbolic::is_symbolic<LastType>::value,
242
+ ArithmeticSequence<FirstTypeDerived, symbolic::AddExpr<symbolic::AddExpr<symbolic::NegateExpr<FirstTypeDerived>,symbolic::ValueExpr<> >,
243
+ symbolic::ValueExpr<internal::FixedInt<1> > > > >::type
244
+ seq(const symbolic::BaseExpr<FirstTypeDerived> &f, LastType l)
245
+ {
246
+ return seqN(f.derived(),(typename internal::cleanup_index_type<LastType>::type(l)-f.derived()+fix<1>()));
247
+ }
248
+
249
+ template<typename FirstType,typename LastTypeDerived>
250
+ typename internal::enable_if<!symbolic::is_symbolic<FirstType>::value,
251
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,
252
+ symbolic::AddExpr<symbolic::AddExpr<LastTypeDerived,symbolic::ValueExpr<> >,
253
+ symbolic::ValueExpr<internal::FixedInt<1> > > > >::type
254
+ seq(FirstType f, const symbolic::BaseExpr<LastTypeDerived> &l)
255
+ {
256
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),(l.derived()-typename internal::cleanup_index_type<FirstType>::type(f)+fix<1>()));
257
+ }
258
+
259
+ template<typename FirstTypeDerived,typename LastTypeDerived>
260
+ ArithmeticSequence<FirstTypeDerived,
261
+ symbolic::AddExpr<symbolic::AddExpr<LastTypeDerived,symbolic::NegateExpr<FirstTypeDerived> >,symbolic::ValueExpr<internal::FixedInt<1> > > >
262
+ seq(const symbolic::BaseExpr<FirstTypeDerived> &f, const symbolic::BaseExpr<LastTypeDerived> &l)
263
+ {
264
+ return seqN(f.derived(),(l.derived()-f.derived()+fix<1>()));
265
+ }
266
+
267
+
268
+ template<typename FirstType,typename LastType, typename IncrType>
269
+ typename internal::enable_if<!(symbolic::is_symbolic<FirstType>::value || symbolic::is_symbolic<LastType>::value),
270
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,Index,typename internal::cleanup_seq_incr<IncrType>::type> >::type
271
+ seq(FirstType f, LastType l, IncrType incr)
272
+ {
273
+ typedef typename internal::cleanup_seq_incr<IncrType>::type CleanedIncrType;
274
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),
275
+ Index((typename internal::cleanup_index_type<LastType>::type(l)-typename internal::cleanup_index_type<FirstType>::type(f)+CleanedIncrType(incr))/CleanedIncrType(incr)), incr);
276
+ }
277
+
278
+ template<typename FirstTypeDerived,typename LastType, typename IncrType>
279
+ typename internal::enable_if<!symbolic::is_symbolic<LastType>::value,
280
+ ArithmeticSequence<FirstTypeDerived,
281
+ symbolic::QuotientExpr<symbolic::AddExpr<symbolic::AddExpr<symbolic::NegateExpr<FirstTypeDerived>,
282
+ symbolic::ValueExpr<> >,
283
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
284
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
285
+ typename internal::cleanup_seq_incr<IncrType>::type> >::type
286
+ seq(const symbolic::BaseExpr<FirstTypeDerived> &f, LastType l, IncrType incr)
287
+ {
288
+ typedef typename internal::cleanup_seq_incr<IncrType>::type CleanedIncrType;
289
+ return seqN(f.derived(),(typename internal::cleanup_index_type<LastType>::type(l)-f.derived()+CleanedIncrType(incr))/CleanedIncrType(incr), incr);
290
+ }
291
+
292
+ template<typename FirstType,typename LastTypeDerived, typename IncrType>
293
+ typename internal::enable_if<!symbolic::is_symbolic<FirstType>::value,
294
+ ArithmeticSequence<typename internal::cleanup_index_type<FirstType>::type,
295
+ symbolic::QuotientExpr<symbolic::AddExpr<symbolic::AddExpr<LastTypeDerived,symbolic::ValueExpr<> >,
296
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
297
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
298
+ typename internal::cleanup_seq_incr<IncrType>::type> >::type
299
+ seq(FirstType f, const symbolic::BaseExpr<LastTypeDerived> &l, IncrType incr)
300
+ {
301
+ typedef typename internal::cleanup_seq_incr<IncrType>::type CleanedIncrType;
302
+ return seqN(typename internal::cleanup_index_type<FirstType>::type(f),
303
+ (l.derived()-typename internal::cleanup_index_type<FirstType>::type(f)+CleanedIncrType(incr))/CleanedIncrType(incr), incr);
304
+ }
305
+
306
+ template<typename FirstTypeDerived,typename LastTypeDerived, typename IncrType>
307
+ ArithmeticSequence<FirstTypeDerived,
308
+ symbolic::QuotientExpr<symbolic::AddExpr<symbolic::AddExpr<LastTypeDerived,
309
+ symbolic::NegateExpr<FirstTypeDerived> >,
310
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
311
+ symbolic::ValueExpr<typename internal::cleanup_seq_incr<IncrType>::type> >,
312
+ typename internal::cleanup_seq_incr<IncrType>::type>
313
+ seq(const symbolic::BaseExpr<FirstTypeDerived> &f, const symbolic::BaseExpr<LastTypeDerived> &l, IncrType incr)
314
+ {
315
+ typedef typename internal::cleanup_seq_incr<IncrType>::type CleanedIncrType;
316
+ return seqN(f.derived(),(l.derived()-f.derived()+CleanedIncrType(incr))/CleanedIncrType(incr), incr);
317
+ }
318
+ #endif // EIGEN_HAS_CXX11
319
+
320
+ #endif // EIGEN_PARSED_BY_DOXYGEN
321
+
322
+
323
+ #if EIGEN_HAS_CXX11 || defined(EIGEN_PARSED_BY_DOXYGEN)
324
+ /** \cpp11
325
+ * \returns a symbolic ArithmeticSequence representing the last \a size elements with increment \a incr.
326
+ *
327
+ * It is a shortcut for: \code seqN(last-(size-fix<1>)*incr, size, incr) \endcode
328
+ *
329
+ * \sa lastN(SizeType), seqN(FirstType,SizeType), seq(FirstType,LastType,IncrType) */
330
+ template<typename SizeType,typename IncrType>
331
+ auto lastN(SizeType size, IncrType incr)
332
+ -> decltype(seqN(Eigen::last-(size-fix<1>())*incr, size, incr))
333
+ {
334
+ return seqN(Eigen::last-(size-fix<1>())*incr, size, incr);
335
+ }
336
+
337
+ /** \cpp11
338
+ * \returns a symbolic ArithmeticSequence representing the last \a size elements with a unit increment.
339
+ *
340
+ * It is a shortcut for: \code seq(last+fix<1>-size, last) \endcode
341
+ *
342
+ * \sa lastN(SizeType,IncrType, seqN(FirstType,SizeType), seq(FirstType,LastType) */
343
+ template<typename SizeType>
344
+ auto lastN(SizeType size)
345
+ -> decltype(seqN(Eigen::last+fix<1>()-size, size))
346
+ {
347
+ return seqN(Eigen::last+fix<1>()-size, size);
348
+ }
349
+ #endif
350
+
351
+ namespace internal {
352
+
353
+ // Convert a symbolic span into a usable one (i.e., remove last/end "keywords")
354
+ template<typename T>
355
+ struct make_size_type {
356
+ typedef typename internal::conditional<symbolic::is_symbolic<T>::value, Index, T>::type type;
357
+ };
358
+
359
+ template<typename FirstType,typename SizeType,typename IncrType,int XprSize>
360
+ struct IndexedViewCompatibleType<ArithmeticSequence<FirstType,SizeType,IncrType>, XprSize> {
361
+ typedef ArithmeticSequence<Index,typename make_size_type<SizeType>::type,IncrType> type;
362
+ };
363
+
364
+ template<typename FirstType,typename SizeType,typename IncrType>
365
+ ArithmeticSequence<Index,typename make_size_type<SizeType>::type,IncrType>
366
+ makeIndexedViewCompatible(const ArithmeticSequence<FirstType,SizeType,IncrType>& ids, Index size,SpecializedType) {
367
+ return ArithmeticSequence<Index,typename make_size_type<SizeType>::type,IncrType>(
368
+ eval_expr_given_size(ids.firstObject(),size),eval_expr_given_size(ids.sizeObject(),size),ids.incrObject());
369
+ }
370
+
371
+ template<typename FirstType,typename SizeType,typename IncrType>
372
+ struct get_compile_time_incr<ArithmeticSequence<FirstType,SizeType,IncrType> > {
373
+ enum { value = get_fixed_value<IncrType,DynamicIndex>::value };
374
+ };
375
+
376
+ } // end namespace internal
377
+
378
+ /** \namespace Eigen::indexing
379
+ * \ingroup Core_Module
380
+ *
381
+ * The sole purpose of this namespace is to be able to import all functions
382
+ * and symbols that are expected to be used within operator() for indexing
383
+ * and slicing. If you already imported the whole Eigen namespace:
384
+ * \code using namespace Eigen; \endcode
385
+ * then you are already all set. Otherwise, if you don't want/cannot import
386
+ * the whole Eigen namespace, the following line:
387
+ * \code using namespace Eigen::indexing; \endcode
388
+ * is equivalent to:
389
+ * \code
390
+ using Eigen::all;
391
+ using Eigen::seq;
392
+ using Eigen::seqN;
393
+ using Eigen::lastN; // c++11 only
394
+ using Eigen::last;
395
+ using Eigen::lastp1;
396
+ using Eigen::fix;
397
+ \endcode
398
+ */
399
+ namespace indexing {
400
+ using Eigen::all;
401
+ using Eigen::seq;
402
+ using Eigen::seqN;
403
+ #if EIGEN_HAS_CXX11
404
+ using Eigen::lastN;
405
+ #endif
406
+ using Eigen::last;
407
+ using Eigen::lastp1;
408
+ using Eigen::fix;
409
+ }
410
+
411
+ } // end namespace Eigen
412
+
413
+ #endif // EIGEN_ARITHMETIC_SEQUENCE_H
@@ -117,7 +117,7 @@ class Array
117
117
  {
118
118
  return Base::_set(other);
119
119
  }
120
-
120
+
121
121
  /** Default constructor.
122
122
  *
123
123
  * For fixed-size matrices, does nothing.
@@ -157,11 +157,50 @@ class Array
157
157
  EIGEN_DEVICE_FUNC
158
158
  Array& operator=(Array&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_assignable<Scalar>::value)
159
159
  {
160
- other.swap(*this);
160
+ Base::operator=(std::move(other));
161
161
  return *this;
162
162
  }
163
163
  #endif
164
164
 
165
+ #if EIGEN_HAS_CXX11
166
+ /** \copydoc PlainObjectBase(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
167
+ *
168
+ * Example: \include Array_variadic_ctor_cxx11.cpp
169
+ * Output: \verbinclude Array_variadic_ctor_cxx11.out
170
+ *
171
+ * \sa Array(const std::initializer_list<std::initializer_list<Scalar>>&)
172
+ * \sa Array(const Scalar&), Array(const Scalar&,const Scalar&)
173
+ */
174
+ template <typename... ArgTypes>
175
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
176
+ Array(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
177
+ : Base(a0, a1, a2, a3, args...) {}
178
+
179
+ /** \brief Constructs an array and initializes it from the coefficients given as initializer-lists grouped by row. \cpp11
180
+ *
181
+ * In the general case, the constructor takes a list of rows, each row being represented as a list of coefficients:
182
+ *
183
+ * Example: \include Array_initializer_list_23_cxx11.cpp
184
+ * Output: \verbinclude Array_initializer_list_23_cxx11.out
185
+ *
186
+ * Each of the inner initializer lists must contain the exact same number of elements, otherwise an assertion is triggered.
187
+ *
188
+ * In the case of a compile-time column 1D array, implicit transposition from a single row is allowed.
189
+ * Therefore <code> Array<int,Dynamic,1>{{1,2,3,4,5}}</code> is legal and the more verbose syntax
190
+ * <code>Array<int,Dynamic,1>{{1},{2},{3},{4},{5}}</code> can be avoided:
191
+ *
192
+ * Example: \include Array_initializer_list_vector_cxx11.cpp
193
+ * Output: \verbinclude Array_initializer_list_vector_cxx11.out
194
+ *
195
+ * In the case of fixed-sized arrays, the initializer list sizes must exactly match the array sizes,
196
+ * and implicit transposition is allowed for compile-time 1D arrays only.
197
+ *
198
+ * \sa Array(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
199
+ */
200
+ EIGEN_DEVICE_FUNC
201
+ EIGEN_STRONG_INLINE Array(const std::initializer_list<std::initializer_list<Scalar>>& list) : Base(list) {}
202
+ #endif // end EIGEN_HAS_CXX11
203
+
165
204
  #ifndef EIGEN_PARSED_BY_DOXYGEN
166
205
  template<typename T>
167
206
  EIGEN_DEVICE_FUNC
@@ -178,6 +217,7 @@ class Array
178
217
  Base::_check_template_params();
179
218
  this->template _init2<T0,T1>(val0, val1);
180
219
  }
220
+
181
221
  #else
182
222
  /** \brief Constructs a fixed-sized array initialized with coefficients starting at \a data */
183
223
  EIGEN_DEVICE_FUNC explicit Array(const Scalar *data);
@@ -189,7 +229,8 @@ class Array
189
229
  */
190
230
  EIGEN_DEVICE_FUNC
191
231
  EIGEN_STRONG_INLINE explicit Array(Index dim);
192
- /** constructs an initialized 1x1 Array with the given coefficient */
232
+ /** constructs an initialized 1x1 Array with the given coefficient
233
+ * \sa const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args */
193
234
  Array(const Scalar& value);
194
235
  /** constructs an uninitialized array with \a rows rows and \a cols columns.
195
236
  *
@@ -197,11 +238,14 @@ class Array
197
238
  * it is redundant to pass these parameters, so one should use the default constructor
198
239
  * Array() instead. */
199
240
  Array(Index rows, Index cols);
200
- /** constructs an initialized 2D vector with given coefficients */
241
+ /** constructs an initialized 2D vector with given coefficients
242
+ * \sa Array(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args) */
201
243
  Array(const Scalar& val0, const Scalar& val1);
202
- #endif
244
+ #endif // end EIGEN_PARSED_BY_DOXYGEN
203
245
 
204
- /** constructs an initialized 3D vector with given coefficients */
246
+ /** constructs an initialized 3D vector with given coefficients
247
+ * \sa Array(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
248
+ */
205
249
  EIGEN_DEVICE_FUNC
206
250
  EIGEN_STRONG_INLINE Array(const Scalar& val0, const Scalar& val1, const Scalar& val2)
207
251
  {
@@ -211,7 +255,9 @@ class Array
211
255
  m_storage.data()[1] = val1;
212
256
  m_storage.data()[2] = val2;
213
257
  }
214
- /** constructs an initialized 4D vector with given coefficients */
258
+ /** constructs an initialized 4D vector with given coefficients
259
+ * \sa Array(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
260
+ */
215
261
  EIGEN_DEVICE_FUNC
216
262
  EIGEN_STRONG_INLINE Array(const Scalar& val0, const Scalar& val1, const Scalar& val2, const Scalar& val3)
217
263
  {
@@ -242,8 +288,10 @@ class Array
242
288
  : Base(other.derived())
243
289
  { }
244
290
 
245
- EIGEN_DEVICE_FUNC inline Index innerStride() const { return 1; }
246
- EIGEN_DEVICE_FUNC inline Index outerStride() const { return this->innerSize(); }
291
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
292
+ inline Index innerStride() const EIGEN_NOEXCEPT{ return 1; }
293
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
294
+ inline Index outerStride() const EIGEN_NOEXCEPT { return this->innerSize(); }
247
295
 
248
296
  #ifdef EIGEN_ARRAY_PLUGIN
249
297
  #include EIGEN_ARRAY_PLUGIN
@@ -258,7 +306,7 @@ class Array
258
306
  /** \defgroup arraytypedefs Global array typedefs
259
307
  * \ingroup Core_Module
260
308
  *
261
- * Eigen defines several typedef shortcuts for most common 1D and 2D array types.
309
+ * %Eigen defines several typedef shortcuts for most common 1D and 2D array types.
262
310
  *
263
311
  * The general patterns are the following:
264
312
  *
@@ -271,6 +319,12 @@ class Array
271
319
  * There are also \c ArraySizeType which are self-explanatory. For example, \c Array4cf is
272
320
  * a fixed-size 1D array of 4 complex floats.
273
321
  *
322
+ * With \cpp11, template alias are also defined for common sizes.
323
+ * They follow the same pattern as above except that the scalar type suffix is replaced by a
324
+ * template parameter, i.e.:
325
+ * - `ArrayRowsCols<Type>` where `Rows` and `Cols` can be \c 2,\c 3,\c 4, or \c X for fixed or dynamic size.
326
+ * - `ArraySize<Type>` where `Size` can be \c 2,\c 3,\c 4 or \c X for fixed or dynamic size 1D arrays.
327
+ *
274
328
  * \sa class Array
275
329
  */
276
330
 
@@ -303,8 +357,42 @@ EIGEN_MAKE_ARRAY_TYPEDEFS_ALL_SIZES(std::complex<double>, cd)
303
357
 
304
358
  #undef EIGEN_MAKE_ARRAY_TYPEDEFS_ALL_SIZES
305
359
  #undef EIGEN_MAKE_ARRAY_TYPEDEFS
360
+ #undef EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS
361
+
362
+ #if EIGEN_HAS_CXX11
363
+
364
+ #define EIGEN_MAKE_ARRAY_TYPEDEFS(Size, SizeSuffix) \
365
+ /** \ingroup arraytypedefs */ \
366
+ /** \brief \cpp11 */ \
367
+ template <typename Type> \
368
+ using Array##SizeSuffix##SizeSuffix = Array<Type, Size, Size>; \
369
+ /** \ingroup arraytypedefs */ \
370
+ /** \brief \cpp11 */ \
371
+ template <typename Type> \
372
+ using Array##SizeSuffix = Array<Type, Size, 1>;
373
+
374
+ #define EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS(Size) \
375
+ /** \ingroup arraytypedefs */ \
376
+ /** \brief \cpp11 */ \
377
+ template <typename Type> \
378
+ using Array##Size##X = Array<Type, Size, Dynamic>; \
379
+ /** \ingroup arraytypedefs */ \
380
+ /** \brief \cpp11 */ \
381
+ template <typename Type> \
382
+ using Array##X##Size = Array<Type, Dynamic, Size>;
383
+
384
+ EIGEN_MAKE_ARRAY_TYPEDEFS(2, 2)
385
+ EIGEN_MAKE_ARRAY_TYPEDEFS(3, 3)
386
+ EIGEN_MAKE_ARRAY_TYPEDEFS(4, 4)
387
+ EIGEN_MAKE_ARRAY_TYPEDEFS(Dynamic, X)
388
+ EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS(2)
389
+ EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS(3)
390
+ EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS(4)
391
+
392
+ #undef EIGEN_MAKE_ARRAY_TYPEDEFS
393
+ #undef EIGEN_MAKE_ARRAY_FIXED_TYPEDEFS
306
394
 
307
- #undef EIGEN_MAKE_ARRAY_TYPEDEFS_LARGE
395
+ #endif // EIGEN_HAS_CXX11
308
396
 
309
397
  #define EIGEN_USING_ARRAY_TYPEDEFS_FOR_TYPE_AND_SIZE(TypeSuffix, SizeSuffix) \
310
398
  using Eigen::Matrix##SizeSuffix##TypeSuffix; \
@@ -69,6 +69,7 @@ template<typename Derived> class ArrayBase
69
69
  using Base::coeff;
70
70
  using Base::coeffRef;
71
71
  using Base::lazyAssign;
72
+ using Base::operator-;
72
73
  using Base::operator=;
73
74
  using Base::operator+=;
74
75
  using Base::operator-=;
@@ -88,7 +89,6 @@ template<typename Derived> class ArrayBase
88
89
 
89
90
  #define EIGEN_CURRENT_STORAGE_BASE_CLASS Eigen::ArrayBase
90
91
  #define EIGEN_DOC_UNARY_ADDONS(X,Y)
91
- # include "../plugins/CommonCwiseUnaryOps.h"
92
92
  # include "../plugins/MatrixCwiseUnaryOps.h"
93
93
  # include "../plugins/ArrayCwiseUnaryOps.h"
94
94
  # include "../plugins/CommonCwiseBinaryOps.h"
@@ -153,8 +153,8 @@ template<typename Derived> class ArrayBase
153
153
  // inline void evalTo(Dest& dst) const { dst = matrix(); }
154
154
 
155
155
  protected:
156
- EIGEN_DEVICE_FUNC
157
- ArrayBase() : Base() {}
156
+ EIGEN_DEFAULT_COPY_CONSTRUCTOR(ArrayBase)
157
+ EIGEN_DEFAULT_EMPTY_CONSTRUCTOR_AND_DESTRUCTOR(ArrayBase)
158
158
 
159
159
  private:
160
160
  explicit ArrayBase(Index);