tomoto 0.2.2 → 0.3.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -2,6 +2,7 @@
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// for linear algebra.
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//
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// Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
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// Copyright (C) 2021 C. Antonio Sanchez <cantonios@google.com>
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//
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// This Source Code Form is subject to the terms of the Mozilla
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// Public License v. 2.0. If a copy of the MPL was not distributed
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#define EIGEN_COMPLEX_CUDA_H
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// clang-format off
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// Many std::complex methods such as operator+, operator-, operator* and
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// operator/ are not constexpr. Due to this, GCC and older versions of clang do
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// not treat them as device functions and thus Eigen functors making use of
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// these operators fail to compile. Here, we manually specialize these
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// operators and functors for complex types when building for CUDA to enable
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// their use on-device.
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#if defined(EIGEN_CUDACC) && defined(EIGEN_GPU_COMPILE_PHASE)
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// ICC already specializes std::complex<float> and std::complex<double>
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// operators, preventing us from making them device functions here.
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// This will lead to silent runtime errors if the operators are used on device.
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//
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// To allow std::complex operator use on device, define _OVERRIDE_COMPLEX_SPECIALIZATION_
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// prior to first inclusion of <complex>. This prevents ICC from adding
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// its own specializations, so our custom ones below can be used instead.
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#if !(defined(EIGEN_COMP_ICC) && defined(_USE_COMPLEX_SPECIALIZATION_))
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// Import Eigen's internal operator specializations.
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#define EIGEN_USING_STD_COMPLEX_OPERATORS \
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using Eigen::complex_operator_detail::operator+; \
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using Eigen::complex_operator_detail::operator-; \
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using Eigen::complex_operator_detail::operator*; \
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using Eigen::complex_operator_detail::operator/; \
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using Eigen::complex_operator_detail::operator+=; \
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using Eigen::complex_operator_detail::operator-=; \
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using Eigen::complex_operator_detail::operator*=; \
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using Eigen::complex_operator_detail::operator/=; \
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using Eigen::complex_operator_detail::operator==; \
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using Eigen::complex_operator_detail::operator!=;
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namespace Eigen {
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// Specialized std::complex overloads.
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namespace complex_operator_detail {
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template<typename T>
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
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std::complex<T> complex_multiply(const std::complex<T>& a, const std::complex<T>& b) {
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const T a_real = numext::real(a);
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const T a_imag = numext::imag(a);
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const T b_real = numext::real(b);
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const T b_imag = numext::imag(b);
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return std::complex<T>(
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a_real * b_real - a_imag * b_imag,
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a_imag * b_real + a_real * b_imag);
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}
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::complex<T> operator() (const std::complex<T>& a, const std::complex<T>& b) const {
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return std::complex<T>(numext::real(a) + numext::real(b),
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numext::imag(a) + numext::imag(b));
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}
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};
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template<typename T> struct scalar_sum_op<std::complex<T>, std::complex<T> > : scalar_sum_op<const std::complex<T>, const std::complex<T> > {};
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// Difference
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template<typename T> struct scalar_difference_op<const std::complex<T>, const std::complex<T> > : binary_op_base<const std::complex<T>, const std::complex<T> > {
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typedef typename std::complex<T> result_type;
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EIGEN_EMPTY_STRUCT_CTOR(scalar_difference_op)
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::complex<T> operator() (const std::complex<T>& a, const std::complex<T>& b) const {
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return std::complex<T>(numext::real(a) - numext::real(b),
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numext::imag(a) - numext::imag(b));
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}
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template<typename T> struct scalar_difference_op<std::complex<T>, std::complex<T> > : scalar_difference_op<const std::complex<T>, const std::complex<T> > {};
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// Product
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template<typename T> struct scalar_product_op<const std::complex<T>, const std::complex<T> > : binary_op_base<const std::complex<T>, const std::complex<T> > {
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enum {
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Vectorizable = packet_traits<std::complex<T>>::HasMul
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};
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typedef typename std::complex<T> result_type;
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EIGEN_EMPTY_STRUCT_CTOR(scalar_product_op)
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::complex<T> operator() (const std::complex<T>& a, const std::complex<T>& b) const {
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const T a_real = numext::real(a);
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const T a_imag = numext::imag(a);
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const T b_real = numext::real(b);
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const T b_imag = numext::imag(b);
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return std::complex<T>(a_real * b_real - a_imag * b_imag,
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a_real * b_imag + a_imag * b_real);
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}
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};
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template<typename T> struct scalar_product_op<std::complex<T>, std::complex<T> > : scalar_product_op<const std::complex<T>, const std::complex<T> > {};
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// Quotient
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template<typename T> struct scalar_quotient_op<const std::complex<T>, const std::complex<T> > : binary_op_base<const std::complex<T>, const std::complex<T> > {
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enum {
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Vectorizable = packet_traits<std::complex<T>>::HasDiv
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typedef typename std::complex<T> result_type;
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EIGEN_EMPTY_STRUCT_CTOR(scalar_quotient_op)
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::complex<T> operator() (const std::complex<T>& a, const std::complex<T>& b) const {
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const T a_real = numext::real(a);
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const T a_imag = numext::imag(a);
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const T b_real = numext::real(b);
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const T b_imag = numext::imag(b);
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const T norm = T(1) / (b_real * b_real + b_imag * b_imag);
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return std::complex<T>((a_real * b_real + a_imag * b_imag) * norm,
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(a_imag * b_real - a_real * b_imag) * norm);
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}
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};
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template<typename T> struct scalar_quotient_op<std::complex<T>, std::complex<T> > : scalar_quotient_op<const std::complex<T>, const std::complex<T> > {};
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template<typename T>
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
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std::complex<T> complex_divide_fast(const std::complex<T>& a, const std::complex<T>& b) {
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const T a_real = numext::real(a);
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const T a_imag = numext::imag(a);
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const T b_real = numext::real(b);
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const T b_imag = numext::imag(b);
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const T norm = (b_real * b_real + b_imag * b_imag);
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return std::complex<T>((a_real * b_real + a_imag * b_imag) / norm,
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(a_imag * b_real - a_real * b_imag) / norm);
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}
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template<typename T>
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
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std::complex<T> complex_divide_stable(const std::complex<T>& a, const std::complex<T>& b) {
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const T a_real = numext::real(a);
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const T a_imag = numext::imag(a);
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const T b_real = numext::real(b);
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const T b_imag = numext::imag(b);
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// Smith's complex division (https://arxiv.org/pdf/1210.4539.pdf),
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// guards against over/under-flow.
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const bool scale_imag = numext::abs(b_imag) <= numext::abs(b_real);
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const T rscale = scale_imag ? T(1) : b_real / b_imag;
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const T iscale = scale_imag ? b_imag / b_real : T(1);
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const T denominator = b_real * rscale + b_imag * iscale;
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return std::complex<T>((a_real * rscale + a_imag * iscale) / denominator,
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(a_imag * rscale - a_real * iscale) / denominator);
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}
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template<typename T>
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
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std::complex<T> complex_divide(const std::complex<T>& a, const std::complex<T>& b) {
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#if EIGEN_FAST_MATH
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return complex_divide_fast(a, b);
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#else
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return complex_divide_stable(a, b);
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#endif
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}
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// NOTE: We cannot specialize compound assignment operators with Scalar T,
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// since they are already specialized for float/double/long double within
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// the standard <complex> header. We also do not specialize the stream
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// operators.
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#define EIGEN_CREATE_STD_COMPLEX_OPERATOR_SPECIALIZATIONS(T) \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator+(const std::complex<T>& a) { return a; } \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator-(const std::complex<T>& a) { \
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return std::complex<T>(-numext::real(a), -numext::imag(a)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator+(const std::complex<T>& a, const std::complex<T>& b) { \
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return std::complex<T>(numext::real(a) + numext::real(b), numext::imag(a) + numext::imag(b)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator+(const std::complex<T>& a, const T& b) { \
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return std::complex<T>(numext::real(a) + b, numext::imag(a)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator+(const T& a, const std::complex<T>& b) { \
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return std::complex<T>(a + numext::real(b), numext::imag(b)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator-(const std::complex<T>& a, const std::complex<T>& b) { \
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return std::complex<T>(numext::real(a) - numext::real(b), numext::imag(a) - numext::imag(b)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator-(const std::complex<T>& a, const T& b) { \
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return std::complex<T>(numext::real(a) - b, numext::imag(a)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator-(const T& a, const std::complex<T>& b) { \
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return std::complex<T>(a - numext::real(b), -numext::imag(b)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator*(const std::complex<T>& a, const std::complex<T>& b) { \
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return complex_multiply(a, b); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator*(const std::complex<T>& a, const T& b) { \
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return std::complex<T>(numext::real(a) * b, numext::imag(a) * b); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator*(const T& a, const std::complex<T>& b) { \
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return std::complex<T>(a * numext::real(b), a * numext::imag(b)); \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator/(const std::complex<T>& a, const std::complex<T>& b) { \
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} \
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\
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EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
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std::complex<T> operator/(const std::complex<T>& a, const T& b) { \
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return std::complex<T>(numext::real(a) / b, numext::imag(a) / b); \
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\
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std::complex<T> operator/(const T& a, const std::complex<T>& b) { \
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174
|
+
return complex_divide(std::complex<T>(a, 0), b); \
|
175
|
+
} \
|
176
|
+
\
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177
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
178
|
+
std::complex<T>& operator+=(std::complex<T>& a, const std::complex<T>& b) { \
|
179
|
+
numext::real_ref(a) += numext::real(b); \
|
180
|
+
numext::imag_ref(a) += numext::imag(b); \
|
181
|
+
return a; \
|
182
|
+
} \
|
183
|
+
\
|
184
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
185
|
+
std::complex<T>& operator-=(std::complex<T>& a, const std::complex<T>& b) { \
|
186
|
+
numext::real_ref(a) -= numext::real(b); \
|
187
|
+
numext::imag_ref(a) -= numext::imag(b); \
|
188
|
+
return a; \
|
189
|
+
} \
|
190
|
+
\
|
191
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
192
|
+
std::complex<T>& operator*=(std::complex<T>& a, const std::complex<T>& b) { \
|
193
|
+
a = complex_multiply(a, b); \
|
194
|
+
return a; \
|
195
|
+
} \
|
196
|
+
\
|
197
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
198
|
+
std::complex<T>& operator/=(std::complex<T>& a, const std::complex<T>& b) { \
|
199
|
+
a = complex_divide(a, b); \
|
200
|
+
return a; \
|
201
|
+
} \
|
202
|
+
\
|
203
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
204
|
+
bool operator==(const std::complex<T>& a, const std::complex<T>& b) { \
|
205
|
+
return numext::real(a) == numext::real(b) && numext::imag(a) == numext::imag(b); \
|
206
|
+
} \
|
207
|
+
\
|
208
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
209
|
+
bool operator==(const std::complex<T>& a, const T& b) { \
|
210
|
+
return numext::real(a) == b && numext::imag(a) == 0; \
|
211
|
+
} \
|
212
|
+
\
|
213
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
214
|
+
bool operator==(const T& a, const std::complex<T>& b) { \
|
215
|
+
return a == numext::real(b) && 0 == numext::imag(b); \
|
216
|
+
} \
|
217
|
+
\
|
218
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
219
|
+
bool operator!=(const std::complex<T>& a, const std::complex<T>& b) { \
|
220
|
+
return !(a == b); \
|
221
|
+
} \
|
222
|
+
\
|
223
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
224
|
+
bool operator!=(const std::complex<T>& a, const T& b) { \
|
225
|
+
return !(a == b); \
|
226
|
+
} \
|
227
|
+
\
|
228
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE \
|
229
|
+
bool operator!=(const T& a, const std::complex<T>& b) { \
|
230
|
+
return !(a == b); \
|
231
|
+
}
|
232
|
+
|
233
|
+
// Do not specialize for long double, since that reduces to double on device.
|
234
|
+
EIGEN_CREATE_STD_COMPLEX_OPERATOR_SPECIALIZATIONS(float)
|
235
|
+
EIGEN_CREATE_STD_COMPLEX_OPERATOR_SPECIALIZATIONS(double)
|
236
|
+
|
237
|
+
#undef EIGEN_CREATE_STD_COMPLEX_OPERATOR_SPECIALIZATIONS
|
238
|
+
|
239
|
+
|
240
|
+
} // namespace complex_operator_detail
|
241
|
+
|
242
|
+
EIGEN_USING_STD_COMPLEX_OPERATORS
|
243
|
+
|
244
|
+
namespace numext {
|
245
|
+
EIGEN_USING_STD_COMPLEX_OPERATORS
|
246
|
+
} // namespace numext
|
247
|
+
|
248
|
+
namespace internal {
|
249
|
+
EIGEN_USING_STD_COMPLEX_OPERATORS
|
250
|
+
|
251
|
+
} // namespace internal
|
252
|
+
} // namespace Eigen
|
98
253
|
|
99
|
-
|
254
|
+
#endif // !(EIGEN_COMP_ICC && _USE_COMPLEX_SPECIALIZATION_)
|
100
255
|
|
101
|
-
|
256
|
+
#endif // EIGEN_CUDACC && EIGEN_GPU_COMPILE_PHASE
|
102
257
|
|
103
|
-
#endif
|
258
|
+
#endif // EIGEN_COMPLEX_CUDA_H
|