tomoto 0.2.2 → 0.3.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/README.md +8 -10
- data/ext/tomoto/ct.cpp +11 -11
- data/ext/tomoto/dmr.cpp +14 -13
- data/ext/tomoto/dt.cpp +14 -14
- data/ext/tomoto/extconf.rb +7 -5
- data/ext/tomoto/gdmr.cpp +7 -7
- data/ext/tomoto/hdp.cpp +9 -9
- data/ext/tomoto/hlda.cpp +13 -13
- data/ext/tomoto/hpa.cpp +5 -5
- data/ext/tomoto/lda.cpp +42 -39
- data/ext/tomoto/llda.cpp +6 -6
- data/ext/tomoto/mglda.cpp +15 -15
- data/ext/tomoto/pa.cpp +6 -6
- data/ext/tomoto/plda.cpp +6 -6
- data/ext/tomoto/slda.cpp +8 -8
- data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
- data/ext/tomoto/utils.h +16 -70
- data/lib/tomoto/version.rb +1 -1
- data/lib/tomoto.rb +5 -1
- data/vendor/EigenRand/EigenRand/Core.h +10 -10
- data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
- data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
- data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
- data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
- data/vendor/EigenRand/EigenRand/EigenRand +11 -6
- data/vendor/EigenRand/EigenRand/Macro.h +13 -7
- data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
- data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
- data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
- data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
- data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
- data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
- data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
- data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
- data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
- data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
- data/vendor/EigenRand/EigenRand/doc.h +24 -12
- data/vendor/EigenRand/README.md +57 -4
- data/vendor/eigen/COPYING.APACHE +203 -0
- data/vendor/eigen/COPYING.BSD +1 -1
- data/vendor/eigen/COPYING.MINPACK +51 -52
- data/vendor/eigen/Eigen/Cholesky +0 -1
- data/vendor/eigen/Eigen/Core +112 -265
- data/vendor/eigen/Eigen/Eigenvalues +2 -3
- data/vendor/eigen/Eigen/Geometry +5 -8
- data/vendor/eigen/Eigen/Householder +0 -1
- data/vendor/eigen/Eigen/Jacobi +0 -1
- data/vendor/eigen/Eigen/KLUSupport +41 -0
- data/vendor/eigen/Eigen/LU +2 -5
- data/vendor/eigen/Eigen/OrderingMethods +0 -3
- data/vendor/eigen/Eigen/PaStiXSupport +1 -0
- data/vendor/eigen/Eigen/PardisoSupport +0 -0
- data/vendor/eigen/Eigen/QR +2 -3
- data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
- data/vendor/eigen/Eigen/SVD +0 -1
- data/vendor/eigen/Eigen/Sparse +0 -2
- data/vendor/eigen/Eigen/SparseCholesky +0 -8
- data/vendor/eigen/Eigen/SparseLU +4 -0
- data/vendor/eigen/Eigen/SparseQR +0 -1
- data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
- data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
- data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
- data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
- data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
- data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
- data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
- data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
- data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
- data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
- data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
- data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
- data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
- data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
- data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
- data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
- data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
- data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
- data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
- data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
- data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
- data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
- data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
- data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
- data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
- data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
- data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
- data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
- data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
- data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
- data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
- data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
- data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
- data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
- data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
- data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
- data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
- data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
- data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
- data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
- data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
- data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
- data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
- data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
- data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
- data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
- data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
- data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
- data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
- data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
- data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
- data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
- data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
- data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
- data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
- data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
- data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
- data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
- data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
- data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
- data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
- data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
- data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
- data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
- data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
- data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
- data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
- data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
- data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
- data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
- data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
- data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
- data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
- data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
- data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
- data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
- data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
- data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
- data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
- data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
- data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
- data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
- data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
- data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
- data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
- data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
- data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
- data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
- data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
- data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
- data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
- data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
- data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
- data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
- data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
- data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
- data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
- data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
- data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
- data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
- data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
- data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
- data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
- data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
- data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
- data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
- data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
- data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
- data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
- data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
- data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
- data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
- data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
- data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
- data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
- data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
- data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
- data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
- data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
- data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
- data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
- data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
- data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
- data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
- data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
- data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
- data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
- data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
- data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
- data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
- data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
- data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
- data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
- data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
- data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
- data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
- data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
- data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
- data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
- data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
- data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
- data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
- data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
- data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
- data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
- data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
- data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
- data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
- data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
- data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
- data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
- data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
- data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
- data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
- data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
- data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
- data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
- data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
- data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
- data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
- data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
- data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
- data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
- data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
- data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
- data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
- data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
- data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
- data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
- data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
- data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
- data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
- data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
- data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
- data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
- data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
- data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
- data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
- data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
- data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
- data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
- data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
- data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
- data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
- data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
- data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
- data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
- data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
- data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
- data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
- data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
- data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
- data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
- data/vendor/eigen/README.md +2 -0
- data/vendor/eigen/bench/btl/README +1 -1
- data/vendor/eigen/bench/tensors/README +6 -7
- data/vendor/eigen/ci/README.md +56 -0
- data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
- data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
- data/vendor/eigen/unsupported/README.txt +1 -1
- data/vendor/tomotopy/README.kr.rst +78 -0
- data/vendor/tomotopy/README.rst +75 -0
- data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
- data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
- data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
- data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
- data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
- data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
- data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
- data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
- data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
- data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
- data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
- data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
- data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
- data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
- data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
- data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
- data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
- data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
- data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
- data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
- data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
- data/vendor/tomotopy/src/Utils/exception.h +6 -0
- data/vendor/tomotopy/src/Utils/math.h +2 -2
- data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
- data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
- data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
- metadata +64 -18
- data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
- data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
- data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
- data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -0,0 +1,694 @@
|
|
1
|
+
/***************************************************************************
|
2
|
+
* Copyright (C) 2017 Codeplay Software Limited
|
3
|
+
* This Source Code Form is subject to the terms of the Mozilla
|
4
|
+
* Public License v. 2.0. If a copy of the MPL was not distributed
|
5
|
+
* with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
|
6
|
+
*
|
7
|
+
*
|
8
|
+
* SyclMemoryModel.h
|
9
|
+
*
|
10
|
+
* Description:
|
11
|
+
* Interface for SYCL buffers to behave as a non-dereferenceable pointer
|
12
|
+
* Interface for Placeholder accessor to behave as a pointer on both host
|
13
|
+
* and device
|
14
|
+
*
|
15
|
+
* Authors:
|
16
|
+
*
|
17
|
+
* Ruyman Reyes Codeplay Software Ltd.
|
18
|
+
* Mehdi Goli Codeplay Software Ltd.
|
19
|
+
* Vanya Yaneva Codeplay Software Ltd.
|
20
|
+
*
|
21
|
+
**************************************************************************/
|
22
|
+
|
23
|
+
#if defined(EIGEN_USE_SYCL) && \
|
24
|
+
!defined(EIGEN_CXX11_TENSOR_TENSOR_SYCL_STORAGE_MEMORY_H)
|
25
|
+
#define EIGEN_CXX11_TENSOR_TENSOR_SYCL_STORAGE_MEMORY_H
|
26
|
+
|
27
|
+
#include <CL/sycl.hpp>
|
28
|
+
#ifdef EIGEN_EXCEPTIONS
|
29
|
+
#include <stdexcept>
|
30
|
+
#endif
|
31
|
+
#include <cstddef>
|
32
|
+
#include <queue>
|
33
|
+
#include <set>
|
34
|
+
#include <unordered_map>
|
35
|
+
|
36
|
+
namespace Eigen {
|
37
|
+
namespace TensorSycl {
|
38
|
+
namespace internal {
|
39
|
+
|
40
|
+
using sycl_acc_target = cl::sycl::access::target;
|
41
|
+
using sycl_acc_mode = cl::sycl::access::mode;
|
42
|
+
|
43
|
+
/**
|
44
|
+
* Default values for template arguments
|
45
|
+
*/
|
46
|
+
using buffer_data_type_t = uint8_t;
|
47
|
+
const sycl_acc_target default_acc_target = sycl_acc_target::global_buffer;
|
48
|
+
const sycl_acc_mode default_acc_mode = sycl_acc_mode::read_write;
|
49
|
+
|
50
|
+
/**
|
51
|
+
* PointerMapper
|
52
|
+
* Associates fake pointers with buffers.
|
53
|
+
*
|
54
|
+
*/
|
55
|
+
class PointerMapper {
|
56
|
+
public:
|
57
|
+
using base_ptr_t = std::intptr_t;
|
58
|
+
|
59
|
+
/* Structure of a virtual pointer
|
60
|
+
*
|
61
|
+
* |================================================|
|
62
|
+
* | POINTER ADDRESS |
|
63
|
+
* |================================================|
|
64
|
+
*/
|
65
|
+
struct virtual_pointer_t {
|
66
|
+
/* Type for the pointers
|
67
|
+
*/
|
68
|
+
base_ptr_t m_contents;
|
69
|
+
|
70
|
+
/** Conversions from virtual_pointer_t to
|
71
|
+
* void * should just reinterpret_cast the integer number
|
72
|
+
*/
|
73
|
+
operator void *() const { return reinterpret_cast<void *>(m_contents); }
|
74
|
+
|
75
|
+
/**
|
76
|
+
* Convert back to the integer number.
|
77
|
+
*/
|
78
|
+
operator base_ptr_t() const { return m_contents; }
|
79
|
+
|
80
|
+
/**
|
81
|
+
* Add a certain value to the pointer to create a
|
82
|
+
* new pointer to that offset
|
83
|
+
*/
|
84
|
+
virtual_pointer_t operator+(size_t off) { return m_contents + off; }
|
85
|
+
|
86
|
+
/* Numerical order for sorting pointers in containers. */
|
87
|
+
bool operator<(virtual_pointer_t rhs) const {
|
88
|
+
return (static_cast<base_ptr_t>(m_contents) <
|
89
|
+
static_cast<base_ptr_t>(rhs.m_contents));
|
90
|
+
}
|
91
|
+
|
92
|
+
bool operator>(virtual_pointer_t rhs) const {
|
93
|
+
return (static_cast<base_ptr_t>(m_contents) >
|
94
|
+
static_cast<base_ptr_t>(rhs.m_contents));
|
95
|
+
}
|
96
|
+
|
97
|
+
/**
|
98
|
+
* Numerical order for sorting pointers in containers
|
99
|
+
*/
|
100
|
+
bool operator==(virtual_pointer_t rhs) const {
|
101
|
+
return (static_cast<base_ptr_t>(m_contents) ==
|
102
|
+
static_cast<base_ptr_t>(rhs.m_contents));
|
103
|
+
}
|
104
|
+
|
105
|
+
/**
|
106
|
+
* Simple forward to the equality overload.
|
107
|
+
*/
|
108
|
+
bool operator!=(virtual_pointer_t rhs) const {
|
109
|
+
return !(this->operator==(rhs));
|
110
|
+
}
|
111
|
+
|
112
|
+
/**
|
113
|
+
* Converts a void * into a virtual pointer structure.
|
114
|
+
* Note that this will only work if the void * was
|
115
|
+
* already a virtual_pointer_t, but we have no way of
|
116
|
+
* checking
|
117
|
+
*/
|
118
|
+
virtual_pointer_t(const void *ptr)
|
119
|
+
: m_contents(reinterpret_cast<base_ptr_t>(ptr)){};
|
120
|
+
|
121
|
+
/**
|
122
|
+
* Creates a virtual_pointer_t from the given integer
|
123
|
+
* number
|
124
|
+
*/
|
125
|
+
virtual_pointer_t(base_ptr_t u) : m_contents(u){};
|
126
|
+
};
|
127
|
+
|
128
|
+
/* Definition of a null pointer
|
129
|
+
*/
|
130
|
+
const virtual_pointer_t null_virtual_ptr = nullptr;
|
131
|
+
|
132
|
+
/**
|
133
|
+
* Whether if a pointer is null or not.
|
134
|
+
* A pointer is nullptr if the value is of null_virtual_ptr
|
135
|
+
*/
|
136
|
+
static inline bool is_nullptr(virtual_pointer_t ptr) {
|
137
|
+
return (static_cast<void *>(ptr) == nullptr);
|
138
|
+
}
|
139
|
+
|
140
|
+
/* basic type for all buffers
|
141
|
+
*/
|
142
|
+
using buffer_t = cl::sycl::buffer_mem;
|
143
|
+
|
144
|
+
/**
|
145
|
+
* Node that stores information about a device allocation.
|
146
|
+
* Nodes are sorted by size to organise a free list of nodes
|
147
|
+
* that can be recovered.
|
148
|
+
*/
|
149
|
+
struct pMapNode_t {
|
150
|
+
buffer_t m_buffer;
|
151
|
+
size_t m_size;
|
152
|
+
bool m_free;
|
153
|
+
|
154
|
+
pMapNode_t(buffer_t b, size_t size, bool f)
|
155
|
+
: m_buffer{b}, m_size{size}, m_free{f} {
|
156
|
+
m_buffer.set_final_data(nullptr);
|
157
|
+
}
|
158
|
+
|
159
|
+
bool operator<=(const pMapNode_t &rhs) { return (m_size <= rhs.m_size); }
|
160
|
+
};
|
161
|
+
|
162
|
+
/** Storage of the pointer / buffer tree
|
163
|
+
*/
|
164
|
+
using pointerMap_t = std::map<virtual_pointer_t, pMapNode_t>;
|
165
|
+
|
166
|
+
/**
|
167
|
+
* Obtain the insertion point in the pointer map for
|
168
|
+
* a pointer of the given size.
|
169
|
+
* \param requiredSize Size attemted to reclaim
|
170
|
+
*/
|
171
|
+
typename pointerMap_t::iterator get_insertion_point(size_t requiredSize) {
|
172
|
+
typename pointerMap_t::iterator retVal;
|
173
|
+
bool reuse = false;
|
174
|
+
if (!m_freeList.empty()) {
|
175
|
+
// try to re-use an existing block
|
176
|
+
for (auto freeElem : m_freeList) {
|
177
|
+
if (freeElem->second.m_size >= requiredSize) {
|
178
|
+
retVal = freeElem;
|
179
|
+
reuse = true;
|
180
|
+
// Element is not going to be free anymore
|
181
|
+
m_freeList.erase(freeElem);
|
182
|
+
break;
|
183
|
+
}
|
184
|
+
}
|
185
|
+
}
|
186
|
+
if (!reuse) {
|
187
|
+
retVal = std::prev(m_pointerMap.end());
|
188
|
+
}
|
189
|
+
return retVal;
|
190
|
+
}
|
191
|
+
|
192
|
+
/**
|
193
|
+
* Returns an iterator to the node that stores the information
|
194
|
+
* of the given virtual pointer from the given pointer map structure.
|
195
|
+
* If pointer is not found, throws std::out_of_range.
|
196
|
+
* If the pointer map structure is empty, throws std::out_of_range
|
197
|
+
*
|
198
|
+
* \param pMap the pointerMap_t structure storing all the pointers
|
199
|
+
* \param virtual_pointer_ptr The virtual pointer to obtain the node of
|
200
|
+
* \throws std::out:of_range if the pointer is not found or pMap is empty
|
201
|
+
*/
|
202
|
+
typename pointerMap_t::iterator get_node(const virtual_pointer_t ptr) {
|
203
|
+
if (this->count() == 0) {
|
204
|
+
m_pointerMap.clear();
|
205
|
+
EIGEN_THROW_X(std::out_of_range("There are no pointers allocated\n"));
|
206
|
+
|
207
|
+
}
|
208
|
+
if (is_nullptr(ptr)) {
|
209
|
+
m_pointerMap.clear();
|
210
|
+
EIGEN_THROW_X(std::out_of_range("Cannot access null pointer\n"));
|
211
|
+
}
|
212
|
+
// The previous element to the lower bound is the node that
|
213
|
+
// holds this memory address
|
214
|
+
auto node = m_pointerMap.lower_bound(ptr);
|
215
|
+
// If the value of the pointer is not the one of the node
|
216
|
+
// then we return the previous one
|
217
|
+
if (node == std::end(m_pointerMap)) {
|
218
|
+
--node;
|
219
|
+
} else if (node->first != ptr) {
|
220
|
+
if (node == std::begin(m_pointerMap)) {
|
221
|
+
m_pointerMap.clear();
|
222
|
+
EIGEN_THROW_X(
|
223
|
+
std::out_of_range("The pointer is not registered in the map\n"));
|
224
|
+
|
225
|
+
}
|
226
|
+
--node;
|
227
|
+
}
|
228
|
+
|
229
|
+
return node;
|
230
|
+
}
|
231
|
+
|
232
|
+
/* get_buffer.
|
233
|
+
* Returns a buffer from the map using the pointer address
|
234
|
+
*/
|
235
|
+
template <typename buffer_data_type = buffer_data_type_t>
|
236
|
+
cl::sycl::buffer<buffer_data_type, 1> get_buffer(
|
237
|
+
const virtual_pointer_t ptr) {
|
238
|
+
using sycl_buffer_t = cl::sycl::buffer<buffer_data_type, 1>;
|
239
|
+
|
240
|
+
// get_node() returns a `buffer_mem`, so we need to cast it to a `buffer<>`.
|
241
|
+
// We can do this without the `buffer_mem` being a pointer, as we
|
242
|
+
// only declare member variables in the base class (`buffer_mem`) and not in
|
243
|
+
// the child class (`buffer<>).
|
244
|
+
auto node = get_node(ptr);
|
245
|
+
eigen_assert(node->first == ptr || node->first < ptr);
|
246
|
+
eigen_assert(ptr < static_cast<virtual_pointer_t>(node->second.m_size +
|
247
|
+
node->first));
|
248
|
+
return *(static_cast<sycl_buffer_t *>(&node->second.m_buffer));
|
249
|
+
}
|
250
|
+
|
251
|
+
/**
|
252
|
+
* @brief Returns an accessor to the buffer of the given virtual pointer
|
253
|
+
* @param accessMode
|
254
|
+
* @param accessTarget
|
255
|
+
* @param ptr The virtual pointer
|
256
|
+
*/
|
257
|
+
template <sycl_acc_mode access_mode = default_acc_mode,
|
258
|
+
sycl_acc_target access_target = default_acc_target,
|
259
|
+
typename buffer_data_type = buffer_data_type_t>
|
260
|
+
cl::sycl::accessor<buffer_data_type, 1, access_mode, access_target>
|
261
|
+
get_access(const virtual_pointer_t ptr) {
|
262
|
+
auto buf = get_buffer<buffer_data_type>(ptr);
|
263
|
+
return buf.template get_access<access_mode, access_target>();
|
264
|
+
}
|
265
|
+
|
266
|
+
/**
|
267
|
+
* @brief Returns an accessor to the buffer of the given virtual pointer
|
268
|
+
* in the given command group scope
|
269
|
+
* @param accessMode
|
270
|
+
* @param accessTarget
|
271
|
+
* @param ptr The virtual pointer
|
272
|
+
* @param cgh Reference to the command group scope
|
273
|
+
*/
|
274
|
+
template <sycl_acc_mode access_mode = default_acc_mode,
|
275
|
+
sycl_acc_target access_target = default_acc_target,
|
276
|
+
typename buffer_data_type = buffer_data_type_t>
|
277
|
+
cl::sycl::accessor<buffer_data_type, 1, access_mode, access_target>
|
278
|
+
get_access(const virtual_pointer_t ptr, cl::sycl::handler &cgh) {
|
279
|
+
auto buf = get_buffer<buffer_data_type>(ptr);
|
280
|
+
return buf.template get_access<access_mode, access_target>(cgh);
|
281
|
+
}
|
282
|
+
|
283
|
+
/*
|
284
|
+
* Returns the offset from the base address of this pointer.
|
285
|
+
*/
|
286
|
+
inline std::ptrdiff_t get_offset(const virtual_pointer_t ptr) {
|
287
|
+
// The previous element to the lower bound is the node that
|
288
|
+
// holds this memory address
|
289
|
+
auto node = get_node(ptr);
|
290
|
+
auto start = node->first;
|
291
|
+
eigen_assert(start == ptr || start < ptr);
|
292
|
+
eigen_assert(ptr < start + node->second.m_size);
|
293
|
+
return (ptr - start);
|
294
|
+
}
|
295
|
+
|
296
|
+
/*
|
297
|
+
* Returns the number of elements by which the given pointer is offset from
|
298
|
+
* the base address.
|
299
|
+
*/
|
300
|
+
template <typename buffer_data_type>
|
301
|
+
inline size_t get_element_offset(const virtual_pointer_t ptr) {
|
302
|
+
return get_offset(ptr) / sizeof(buffer_data_type);
|
303
|
+
}
|
304
|
+
|
305
|
+
/**
|
306
|
+
* Constructs the PointerMapper structure.
|
307
|
+
*/
|
308
|
+
PointerMapper(base_ptr_t baseAddress = 4096)
|
309
|
+
: m_pointerMap{}, m_freeList{}, m_baseAddress{baseAddress} {
|
310
|
+
if (m_baseAddress == 0) {
|
311
|
+
EIGEN_THROW_X(std::invalid_argument("Base address cannot be zero\n"));
|
312
|
+
}
|
313
|
+
};
|
314
|
+
|
315
|
+
/**
|
316
|
+
* PointerMapper cannot be copied or moved
|
317
|
+
*/
|
318
|
+
PointerMapper(const PointerMapper &) = delete;
|
319
|
+
|
320
|
+
/**
|
321
|
+
* Empty the pointer list
|
322
|
+
*/
|
323
|
+
inline void clear() {
|
324
|
+
m_freeList.clear();
|
325
|
+
m_pointerMap.clear();
|
326
|
+
}
|
327
|
+
|
328
|
+
/* add_pointer.
|
329
|
+
* Adds an existing pointer to the map and returns the virtual pointer id.
|
330
|
+
*/
|
331
|
+
inline virtual_pointer_t add_pointer(const buffer_t &b) {
|
332
|
+
return add_pointer_impl(b);
|
333
|
+
}
|
334
|
+
|
335
|
+
/* add_pointer.
|
336
|
+
* Adds a pointer to the map and returns the virtual pointer id.
|
337
|
+
*/
|
338
|
+
inline virtual_pointer_t add_pointer(buffer_t &&b) {
|
339
|
+
return add_pointer_impl(b);
|
340
|
+
}
|
341
|
+
|
342
|
+
/**
|
343
|
+
* @brief Fuses the given node with the previous nodes in the
|
344
|
+
* pointer map if they are free
|
345
|
+
*
|
346
|
+
* @param node A reference to the free node to be fused
|
347
|
+
*/
|
348
|
+
void fuse_forward(typename pointerMap_t::iterator &node) {
|
349
|
+
while (node != std::prev(m_pointerMap.end())) {
|
350
|
+
// if following node is free
|
351
|
+
// remove it and extend the current node with its size
|
352
|
+
auto fwd_node = std::next(node);
|
353
|
+
if (!fwd_node->second.m_free) {
|
354
|
+
break;
|
355
|
+
}
|
356
|
+
auto fwd_size = fwd_node->second.m_size;
|
357
|
+
m_freeList.erase(fwd_node);
|
358
|
+
m_pointerMap.erase(fwd_node);
|
359
|
+
|
360
|
+
node->second.m_size += fwd_size;
|
361
|
+
}
|
362
|
+
}
|
363
|
+
|
364
|
+
/**
|
365
|
+
* @brief Fuses the given node with the following nodes in the
|
366
|
+
* pointer map if they are free
|
367
|
+
*
|
368
|
+
* @param node A reference to the free node to be fused
|
369
|
+
*/
|
370
|
+
void fuse_backward(typename pointerMap_t::iterator &node) {
|
371
|
+
while (node != m_pointerMap.begin()) {
|
372
|
+
// if previous node is free, extend it
|
373
|
+
// with the size of the current one
|
374
|
+
auto prev_node = std::prev(node);
|
375
|
+
if (!prev_node->second.m_free) {
|
376
|
+
break;
|
377
|
+
}
|
378
|
+
prev_node->second.m_size += node->second.m_size;
|
379
|
+
|
380
|
+
// remove the current node
|
381
|
+
m_freeList.erase(node);
|
382
|
+
m_pointerMap.erase(node);
|
383
|
+
|
384
|
+
// point to the previous node
|
385
|
+
node = prev_node;
|
386
|
+
}
|
387
|
+
}
|
388
|
+
|
389
|
+
/* remove_pointer.
|
390
|
+
* Removes the given pointer from the map.
|
391
|
+
* The pointer is allowed to be reused only if ReUse if true.
|
392
|
+
*/
|
393
|
+
template <bool ReUse = true>
|
394
|
+
void remove_pointer(const virtual_pointer_t ptr) {
|
395
|
+
if (is_nullptr(ptr)) {
|
396
|
+
return;
|
397
|
+
}
|
398
|
+
auto node = this->get_node(ptr);
|
399
|
+
|
400
|
+
node->second.m_free = true;
|
401
|
+
m_freeList.emplace(node);
|
402
|
+
|
403
|
+
// Fuse the node
|
404
|
+
// with free nodes before and after it
|
405
|
+
fuse_forward(node);
|
406
|
+
fuse_backward(node);
|
407
|
+
|
408
|
+
// If after fusing the node is the last one
|
409
|
+
// simply remove it (since it is free)
|
410
|
+
if (node == std::prev(m_pointerMap.end())) {
|
411
|
+
m_freeList.erase(node);
|
412
|
+
m_pointerMap.erase(node);
|
413
|
+
}
|
414
|
+
}
|
415
|
+
|
416
|
+
/* count.
|
417
|
+
* Return the number of active pointers (i.e, pointers that
|
418
|
+
* have been malloc but not freed).
|
419
|
+
*/
|
420
|
+
size_t count() const { return (m_pointerMap.size() - m_freeList.size()); }
|
421
|
+
|
422
|
+
private:
|
423
|
+
/* add_pointer_impl.
|
424
|
+
* Adds a pointer to the map and returns the virtual pointer id.
|
425
|
+
* BufferT is either a const buffer_t& or a buffer_t&&.
|
426
|
+
*/
|
427
|
+
template <class BufferT>
|
428
|
+
virtual_pointer_t add_pointer_impl(BufferT b) {
|
429
|
+
virtual_pointer_t retVal = nullptr;
|
430
|
+
size_t bufSize = b.get_count();
|
431
|
+
pMapNode_t p{b, bufSize, false};
|
432
|
+
// If this is the first pointer:
|
433
|
+
if (m_pointerMap.empty()) {
|
434
|
+
virtual_pointer_t initialVal{m_baseAddress};
|
435
|
+
m_pointerMap.emplace(initialVal, p);
|
436
|
+
return initialVal;
|
437
|
+
}
|
438
|
+
|
439
|
+
auto lastElemIter = get_insertion_point(bufSize);
|
440
|
+
// We are recovering an existing free node
|
441
|
+
if (lastElemIter->second.m_free) {
|
442
|
+
lastElemIter->second.m_buffer = b;
|
443
|
+
lastElemIter->second.m_free = false;
|
444
|
+
|
445
|
+
// If the recovered node is bigger than the inserted one
|
446
|
+
// add a new free node with the remaining space
|
447
|
+
if (lastElemIter->second.m_size > bufSize) {
|
448
|
+
// create a new node with the remaining space
|
449
|
+
auto remainingSize = lastElemIter->second.m_size - bufSize;
|
450
|
+
pMapNode_t p2{b, remainingSize, true};
|
451
|
+
|
452
|
+
// update size of the current node
|
453
|
+
lastElemIter->second.m_size = bufSize;
|
454
|
+
|
455
|
+
// add the new free node
|
456
|
+
auto newFreePtr = lastElemIter->first + bufSize;
|
457
|
+
auto freeNode = m_pointerMap.emplace(newFreePtr, p2).first;
|
458
|
+
m_freeList.emplace(freeNode);
|
459
|
+
}
|
460
|
+
|
461
|
+
retVal = lastElemIter->first;
|
462
|
+
} else {
|
463
|
+
size_t lastSize = lastElemIter->second.m_size;
|
464
|
+
retVal = lastElemIter->first + lastSize;
|
465
|
+
m_pointerMap.emplace(retVal, p);
|
466
|
+
}
|
467
|
+
return retVal;
|
468
|
+
}
|
469
|
+
|
470
|
+
/**
|
471
|
+
* Compare two iterators to pointer map entries according to
|
472
|
+
* the size of the allocation on the device.
|
473
|
+
*/
|
474
|
+
struct SortBySize {
|
475
|
+
bool operator()(typename pointerMap_t::iterator a,
|
476
|
+
typename pointerMap_t::iterator b) const {
|
477
|
+
return ((a->first < b->first) && (a->second <= b->second)) ||
|
478
|
+
((a->first < b->first) && (b->second <= a->second));
|
479
|
+
}
|
480
|
+
};
|
481
|
+
|
482
|
+
/* Maps the pointer addresses to buffer and size pairs.
|
483
|
+
*/
|
484
|
+
pointerMap_t m_pointerMap;
|
485
|
+
|
486
|
+
/* List of free nodes available for re-using
|
487
|
+
*/
|
488
|
+
std::set<typename pointerMap_t::iterator, SortBySize> m_freeList;
|
489
|
+
|
490
|
+
/* Base address used when issuing the first virtual pointer, allows users
|
491
|
+
* to specify alignment. Cannot be zero. */
|
492
|
+
std::intptr_t m_baseAddress;
|
493
|
+
};
|
494
|
+
|
495
|
+
/* remove_pointer.
|
496
|
+
* Removes the given pointer from the map.
|
497
|
+
* The pointer is allowed to be reused only if ReUse if true.
|
498
|
+
*/
|
499
|
+
template <>
|
500
|
+
inline void PointerMapper::remove_pointer<false>(const virtual_pointer_t ptr) {
|
501
|
+
if (is_nullptr(ptr)) {
|
502
|
+
return;
|
503
|
+
}
|
504
|
+
m_pointerMap.erase(this->get_node(ptr));
|
505
|
+
}
|
506
|
+
|
507
|
+
/**
|
508
|
+
* Malloc-like interface to the pointer-mapper.
|
509
|
+
* Given a size, creates a byte-typed buffer and returns a
|
510
|
+
* fake pointer to keep track of it.
|
511
|
+
* \param size Size in bytes of the desired allocation
|
512
|
+
* \throw cl::sycl::exception if error while creating the buffer
|
513
|
+
*/
|
514
|
+
inline void *SYCLmalloc(size_t size, PointerMapper &pMap) {
|
515
|
+
if (size == 0) {
|
516
|
+
return nullptr;
|
517
|
+
}
|
518
|
+
// Create a generic buffer of the given size
|
519
|
+
using buffer_t = cl::sycl::buffer<buffer_data_type_t, 1>;
|
520
|
+
auto thePointer = pMap.add_pointer(buffer_t(cl::sycl::range<1>{size}));
|
521
|
+
// Store the buffer on the global list
|
522
|
+
return static_cast<void *>(thePointer);
|
523
|
+
}
|
524
|
+
|
525
|
+
/**
|
526
|
+
* Free-like interface to the pointer mapper.
|
527
|
+
* Given a fake-pointer created with the virtual-pointer malloc,
|
528
|
+
* destroys the buffer and remove it from the list.
|
529
|
+
* If ReUse is false, the pointer is not added to the freeList,
|
530
|
+
* it should be false only for sub-buffers.
|
531
|
+
*/
|
532
|
+
template <bool ReUse = true, typename PointerMapper>
|
533
|
+
inline void SYCLfree(void *ptr, PointerMapper &pMap) {
|
534
|
+
pMap.template remove_pointer<ReUse>(ptr);
|
535
|
+
}
|
536
|
+
|
537
|
+
/**
|
538
|
+
* Clear all the memory allocated by SYCL.
|
539
|
+
*/
|
540
|
+
template <typename PointerMapper>
|
541
|
+
inline void SYCLfreeAll(PointerMapper &pMap) {
|
542
|
+
pMap.clear();
|
543
|
+
}
|
544
|
+
|
545
|
+
template <cl::sycl::access::mode AcMd, typename T>
|
546
|
+
struct RangeAccess {
|
547
|
+
static const auto global_access = cl::sycl::access::target::global_buffer;
|
548
|
+
static const auto is_place_holder = cl::sycl::access::placeholder::true_t;
|
549
|
+
typedef T scalar_t;
|
550
|
+
typedef scalar_t &ref_t;
|
551
|
+
typedef typename cl::sycl::global_ptr<scalar_t>::pointer_t ptr_t;
|
552
|
+
|
553
|
+
// the accessor type does not necessarily the same as T
|
554
|
+
typedef cl::sycl::accessor<scalar_t, 1, AcMd, global_access, is_place_holder>
|
555
|
+
accessor;
|
556
|
+
|
557
|
+
typedef RangeAccess<AcMd, T> self_t;
|
558
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE RangeAccess(accessor access,
|
559
|
+
size_t offset,
|
560
|
+
std::intptr_t virtual_ptr)
|
561
|
+
: access_(access), offset_(offset), virtual_ptr_(virtual_ptr) {}
|
562
|
+
|
563
|
+
RangeAccess(cl::sycl::buffer<scalar_t, 1> buff =
|
564
|
+
cl::sycl::buffer<scalar_t, 1>(cl::sycl::range<1>(1)))
|
565
|
+
: access_{accessor{buff}}, offset_(0), virtual_ptr_(-1) {}
|
566
|
+
|
567
|
+
// This should be only used for null constructor on the host side
|
568
|
+
RangeAccess(std::nullptr_t) : RangeAccess() {}
|
569
|
+
// This template parameter must be removed and scalar_t should be replaced
|
570
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ptr_t get_pointer() const {
|
571
|
+
return (access_.get_pointer().get() + offset_);
|
572
|
+
}
|
573
|
+
template <typename Index>
|
574
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t &operator+=(Index offset) {
|
575
|
+
offset_ += (offset);
|
576
|
+
return *this;
|
577
|
+
}
|
578
|
+
template <typename Index>
|
579
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t operator+(Index offset) const {
|
580
|
+
return self_t(access_, offset_ + offset, virtual_ptr_);
|
581
|
+
}
|
582
|
+
template <typename Index>
|
583
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t operator-(Index offset) const {
|
584
|
+
return self_t(access_, offset_ - offset, virtual_ptr_);
|
585
|
+
}
|
586
|
+
template <typename Index>
|
587
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t &operator-=(Index offset) {
|
588
|
+
offset_ -= offset;
|
589
|
+
return *this;
|
590
|
+
}
|
591
|
+
|
592
|
+
// THIS IS FOR NULL COMPARISON ONLY
|
593
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE friend bool operator==(
|
594
|
+
const RangeAccess &lhs, std::nullptr_t) {
|
595
|
+
return ((lhs.virtual_ptr_ == -1));
|
596
|
+
}
|
597
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE friend bool operator!=(
|
598
|
+
const RangeAccess &lhs, std::nullptr_t i) {
|
599
|
+
return !(lhs == i);
|
600
|
+
}
|
601
|
+
|
602
|
+
// THIS IS FOR NULL COMPARISON ONLY
|
603
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE friend bool operator==(
|
604
|
+
std::nullptr_t, const RangeAccess &rhs) {
|
605
|
+
return ((rhs.virtual_ptr_ == -1));
|
606
|
+
}
|
607
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE friend bool operator!=(
|
608
|
+
std::nullptr_t i, const RangeAccess &rhs) {
|
609
|
+
return !(i == rhs);
|
610
|
+
}
|
611
|
+
// Prefix operator (Increment and return value)
|
612
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t &operator++() {
|
613
|
+
offset_++;
|
614
|
+
return (*this);
|
615
|
+
}
|
616
|
+
|
617
|
+
// Postfix operator (Return value and increment)
|
618
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE self_t operator++(int i) {
|
619
|
+
EIGEN_UNUSED_VARIABLE(i);
|
620
|
+
self_t temp_iterator(*this);
|
621
|
+
offset_++;
|
622
|
+
return temp_iterator;
|
623
|
+
}
|
624
|
+
|
625
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::ptrdiff_t get_size() const {
|
626
|
+
return (access_.get_count() - offset_);
|
627
|
+
}
|
628
|
+
|
629
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE std::ptrdiff_t get_offset() const {
|
630
|
+
return offset_;
|
631
|
+
}
|
632
|
+
|
633
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void set_offset(std::ptrdiff_t offset) {
|
634
|
+
offset_ = offset;
|
635
|
+
}
|
636
|
+
|
637
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ref_t operator*() const {
|
638
|
+
return *get_pointer();
|
639
|
+
}
|
640
|
+
|
641
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ref_t operator*() {
|
642
|
+
return *get_pointer();
|
643
|
+
}
|
644
|
+
|
645
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ptr_t operator->() = delete;
|
646
|
+
|
647
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ref_t operator[](int x) {
|
648
|
+
return *(get_pointer() + x);
|
649
|
+
}
|
650
|
+
|
651
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE ref_t operator[](int x) const {
|
652
|
+
return *(get_pointer() + x);
|
653
|
+
}
|
654
|
+
|
655
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE scalar_t *get_virtual_pointer() const {
|
656
|
+
return reinterpret_cast<scalar_t *>(virtual_ptr_ +
|
657
|
+
(offset_ * sizeof(scalar_t)));
|
658
|
+
}
|
659
|
+
|
660
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE explicit operator bool() const {
|
661
|
+
return (virtual_ptr_ != -1);
|
662
|
+
}
|
663
|
+
|
664
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE operator RangeAccess<AcMd, const T>() {
|
665
|
+
return RangeAccess<AcMd, const T>(access_, offset_, virtual_ptr_);
|
666
|
+
}
|
667
|
+
|
668
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
|
669
|
+
operator RangeAccess<AcMd, const T>() const {
|
670
|
+
return RangeAccess<AcMd, const T>(access_, offset_, virtual_ptr_);
|
671
|
+
}
|
672
|
+
// binding placeholder accessors to a command group handler for SYCL
|
673
|
+
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(
|
674
|
+
cl::sycl::handler &cgh) const {
|
675
|
+
cgh.require(access_);
|
676
|
+
}
|
677
|
+
|
678
|
+
private:
|
679
|
+
accessor access_;
|
680
|
+
size_t offset_;
|
681
|
+
std::intptr_t virtual_ptr_; // the location of the buffer in the map
|
682
|
+
};
|
683
|
+
|
684
|
+
template <cl::sycl::access::mode AcMd, typename T>
|
685
|
+
struct RangeAccess<AcMd, const T> : RangeAccess<AcMd, T> {
|
686
|
+
typedef RangeAccess<AcMd, T> Base;
|
687
|
+
using Base::Base;
|
688
|
+
};
|
689
|
+
|
690
|
+
} // namespace internal
|
691
|
+
} // namespace TensorSycl
|
692
|
+
} // namespace Eigen
|
693
|
+
|
694
|
+
#endif // EIGEN_CXX11_TENSOR_TENSOR_SYCL_STORAGE_MEMORY_H
|