tomoto 0.2.2 → 0.3.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -0,0 +1,454 @@
1
+ // This file is part of Eigen, a lightweight C++ template library
2
+ // for linear algebra.
3
+ //
4
+ // Copyright (C) 2008-2017 Gael Guennebaud <gael.guennebaud@inria.fr>
5
+ // Copyright (C) 2014 yoco <peter.xiau@gmail.com>
6
+ //
7
+ // This Source Code Form is subject to the terms of the Mozilla
8
+ // Public License v. 2.0. If a copy of the MPL was not distributed
9
+ // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10
+
11
+ #ifndef EIGEN_RESHAPED_H
12
+ #define EIGEN_RESHAPED_H
13
+
14
+ namespace Eigen {
15
+
16
+ /** \class Reshaped
17
+ * \ingroup Core_Module
18
+ *
19
+ * \brief Expression of a fixed-size or dynamic-size reshape
20
+ *
21
+ * \tparam XprType the type of the expression in which we are taking a reshape
22
+ * \tparam Rows the number of rows of the reshape we are taking at compile time (optional)
23
+ * \tparam Cols the number of columns of the reshape we are taking at compile time (optional)
24
+ * \tparam Order can be ColMajor or RowMajor, default is ColMajor.
25
+ *
26
+ * This class represents an expression of either a fixed-size or dynamic-size reshape.
27
+ * It is the return type of DenseBase::reshaped(NRowsType,NColsType) and
28
+ * most of the time this is the only way it is used.
29
+ *
30
+ * However, in C++98, if you want to directly maniputate reshaped expressions,
31
+ * for instance if you want to write a function returning such an expression, you
32
+ * will need to use this class. In C++11, it is advised to use the \em auto
33
+ * keyword for such use cases.
34
+ *
35
+ * Here is an example illustrating the dynamic case:
36
+ * \include class_Reshaped.cpp
37
+ * Output: \verbinclude class_Reshaped.out
38
+ *
39
+ * Here is an example illustrating the fixed-size case:
40
+ * \include class_FixedReshaped.cpp
41
+ * Output: \verbinclude class_FixedReshaped.out
42
+ *
43
+ * \sa DenseBase::reshaped(NRowsType,NColsType)
44
+ */
45
+
46
+ namespace internal {
47
+
48
+ template<typename XprType, int Rows, int Cols, int Order>
49
+ struct traits<Reshaped<XprType, Rows, Cols, Order> > : traits<XprType>
50
+ {
51
+ typedef typename traits<XprType>::Scalar Scalar;
52
+ typedef typename traits<XprType>::StorageKind StorageKind;
53
+ typedef typename traits<XprType>::XprKind XprKind;
54
+ enum{
55
+ MatrixRows = traits<XprType>::RowsAtCompileTime,
56
+ MatrixCols = traits<XprType>::ColsAtCompileTime,
57
+ RowsAtCompileTime = Rows,
58
+ ColsAtCompileTime = Cols,
59
+ MaxRowsAtCompileTime = Rows,
60
+ MaxColsAtCompileTime = Cols,
61
+ XpxStorageOrder = ((int(traits<XprType>::Flags) & RowMajorBit) == RowMajorBit) ? RowMajor : ColMajor,
62
+ ReshapedStorageOrder = (RowsAtCompileTime == 1 && ColsAtCompileTime != 1) ? RowMajor
63
+ : (ColsAtCompileTime == 1 && RowsAtCompileTime != 1) ? ColMajor
64
+ : XpxStorageOrder,
65
+ HasSameStorageOrderAsXprType = (ReshapedStorageOrder == XpxStorageOrder),
66
+ InnerSize = (ReshapedStorageOrder==int(RowMajor)) ? int(ColsAtCompileTime) : int(RowsAtCompileTime),
67
+ InnerStrideAtCompileTime = HasSameStorageOrderAsXprType
68
+ ? int(inner_stride_at_compile_time<XprType>::ret)
69
+ : Dynamic,
70
+ OuterStrideAtCompileTime = Dynamic,
71
+
72
+ HasDirectAccess = internal::has_direct_access<XprType>::ret
73
+ && (Order==int(XpxStorageOrder))
74
+ && ((evaluator<XprType>::Flags&LinearAccessBit)==LinearAccessBit),
75
+
76
+ MaskPacketAccessBit = (InnerSize == Dynamic || (InnerSize % packet_traits<Scalar>::size) == 0)
77
+ && (InnerStrideAtCompileTime == 1)
78
+ ? PacketAccessBit : 0,
79
+ //MaskAlignedBit = ((OuterStrideAtCompileTime!=Dynamic) && (((OuterStrideAtCompileTime * int(sizeof(Scalar))) % 16) == 0)) ? AlignedBit : 0,
80
+ FlagsLinearAccessBit = (RowsAtCompileTime == 1 || ColsAtCompileTime == 1) ? LinearAccessBit : 0,
81
+ FlagsLvalueBit = is_lvalue<XprType>::value ? LvalueBit : 0,
82
+ FlagsRowMajorBit = (ReshapedStorageOrder==int(RowMajor)) ? RowMajorBit : 0,
83
+ FlagsDirectAccessBit = HasDirectAccess ? DirectAccessBit : 0,
84
+ Flags0 = traits<XprType>::Flags & ( (HereditaryBits & ~RowMajorBit) | MaskPacketAccessBit),
85
+
86
+ Flags = (Flags0 | FlagsLinearAccessBit | FlagsLvalueBit | FlagsRowMajorBit | FlagsDirectAccessBit)
87
+ };
88
+ };
89
+
90
+ template<typename XprType, int Rows, int Cols, int Order, bool HasDirectAccess> class ReshapedImpl_dense;
91
+
92
+ } // end namespace internal
93
+
94
+ template<typename XprType, int Rows, int Cols, int Order, typename StorageKind> class ReshapedImpl;
95
+
96
+ template<typename XprType, int Rows, int Cols, int Order> class Reshaped
97
+ : public ReshapedImpl<XprType, Rows, Cols, Order, typename internal::traits<XprType>::StorageKind>
98
+ {
99
+ typedef ReshapedImpl<XprType, Rows, Cols, Order, typename internal::traits<XprType>::StorageKind> Impl;
100
+ public:
101
+ //typedef typename Impl::Base Base;
102
+ typedef Impl Base;
103
+ EIGEN_GENERIC_PUBLIC_INTERFACE(Reshaped)
104
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Reshaped)
105
+
106
+ /** Fixed-size constructor
107
+ */
108
+ EIGEN_DEVICE_FUNC
109
+ inline Reshaped(XprType& xpr)
110
+ : Impl(xpr)
111
+ {
112
+ EIGEN_STATIC_ASSERT(RowsAtCompileTime!=Dynamic && ColsAtCompileTime!=Dynamic,THIS_METHOD_IS_ONLY_FOR_FIXED_SIZE)
113
+ eigen_assert(Rows * Cols == xpr.rows() * xpr.cols());
114
+ }
115
+
116
+ /** Dynamic-size constructor
117
+ */
118
+ EIGEN_DEVICE_FUNC
119
+ inline Reshaped(XprType& xpr,
120
+ Index reshapeRows, Index reshapeCols)
121
+ : Impl(xpr, reshapeRows, reshapeCols)
122
+ {
123
+ eigen_assert((RowsAtCompileTime==Dynamic || RowsAtCompileTime==reshapeRows)
124
+ && (ColsAtCompileTime==Dynamic || ColsAtCompileTime==reshapeCols));
125
+ eigen_assert(reshapeRows * reshapeCols == xpr.rows() * xpr.cols());
126
+ }
127
+ };
128
+
129
+ // The generic default implementation for dense reshape simply forward to the internal::ReshapedImpl_dense
130
+ // that must be specialized for direct and non-direct access...
131
+ template<typename XprType, int Rows, int Cols, int Order>
132
+ class ReshapedImpl<XprType, Rows, Cols, Order, Dense>
133
+ : public internal::ReshapedImpl_dense<XprType, Rows, Cols, Order,internal::traits<Reshaped<XprType,Rows,Cols,Order> >::HasDirectAccess>
134
+ {
135
+ typedef internal::ReshapedImpl_dense<XprType, Rows, Cols, Order,internal::traits<Reshaped<XprType,Rows,Cols,Order> >::HasDirectAccess> Impl;
136
+ public:
137
+ typedef Impl Base;
138
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(ReshapedImpl)
139
+ EIGEN_DEVICE_FUNC inline ReshapedImpl(XprType& xpr) : Impl(xpr) {}
140
+ EIGEN_DEVICE_FUNC inline ReshapedImpl(XprType& xpr, Index reshapeRows, Index reshapeCols)
141
+ : Impl(xpr, reshapeRows, reshapeCols) {}
142
+ };
143
+
144
+ namespace internal {
145
+
146
+ /** \internal Internal implementation of dense Reshaped in the general case. */
147
+ template<typename XprType, int Rows, int Cols, int Order>
148
+ class ReshapedImpl_dense<XprType,Rows,Cols,Order,false>
149
+ : public internal::dense_xpr_base<Reshaped<XprType, Rows, Cols, Order> >::type
150
+ {
151
+ typedef Reshaped<XprType, Rows, Cols, Order> ReshapedType;
152
+ public:
153
+
154
+ typedef typename internal::dense_xpr_base<ReshapedType>::type Base;
155
+ EIGEN_DENSE_PUBLIC_INTERFACE(ReshapedType)
156
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(ReshapedImpl_dense)
157
+
158
+ typedef typename internal::ref_selector<XprType>::non_const_type MatrixTypeNested;
159
+ typedef typename internal::remove_all<XprType>::type NestedExpression;
160
+
161
+ class InnerIterator;
162
+
163
+ /** Fixed-size constructor
164
+ */
165
+ EIGEN_DEVICE_FUNC
166
+ inline ReshapedImpl_dense(XprType& xpr)
167
+ : m_xpr(xpr), m_rows(Rows), m_cols(Cols)
168
+ {}
169
+
170
+ /** Dynamic-size constructor
171
+ */
172
+ EIGEN_DEVICE_FUNC
173
+ inline ReshapedImpl_dense(XprType& xpr, Index nRows, Index nCols)
174
+ : m_xpr(xpr), m_rows(nRows), m_cols(nCols)
175
+ {}
176
+
177
+ EIGEN_DEVICE_FUNC Index rows() const { return m_rows; }
178
+ EIGEN_DEVICE_FUNC Index cols() const { return m_cols; }
179
+
180
+ #ifdef EIGEN_PARSED_BY_DOXYGEN
181
+ /** \sa MapBase::data() */
182
+ EIGEN_DEVICE_FUNC inline const Scalar* data() const;
183
+ EIGEN_DEVICE_FUNC inline Index innerStride() const;
184
+ EIGEN_DEVICE_FUNC inline Index outerStride() const;
185
+ #endif
186
+
187
+ /** \returns the nested expression */
188
+ EIGEN_DEVICE_FUNC
189
+ const typename internal::remove_all<XprType>::type&
190
+ nestedExpression() const { return m_xpr; }
191
+
192
+ /** \returns the nested expression */
193
+ EIGEN_DEVICE_FUNC
194
+ typename internal::remove_reference<XprType>::type&
195
+ nestedExpression() { return m_xpr; }
196
+
197
+ protected:
198
+
199
+ MatrixTypeNested m_xpr;
200
+ const internal::variable_if_dynamic<Index, Rows> m_rows;
201
+ const internal::variable_if_dynamic<Index, Cols> m_cols;
202
+ };
203
+
204
+
205
+ /** \internal Internal implementation of dense Reshaped in the direct access case. */
206
+ template<typename XprType, int Rows, int Cols, int Order>
207
+ class ReshapedImpl_dense<XprType, Rows, Cols, Order, true>
208
+ : public MapBase<Reshaped<XprType, Rows, Cols, Order> >
209
+ {
210
+ typedef Reshaped<XprType, Rows, Cols, Order> ReshapedType;
211
+ typedef typename internal::ref_selector<XprType>::non_const_type XprTypeNested;
212
+ public:
213
+
214
+ typedef MapBase<ReshapedType> Base;
215
+ EIGEN_DENSE_PUBLIC_INTERFACE(ReshapedType)
216
+ EIGEN_INHERIT_ASSIGNMENT_OPERATORS(ReshapedImpl_dense)
217
+
218
+ /** Fixed-size constructor
219
+ */
220
+ EIGEN_DEVICE_FUNC
221
+ inline ReshapedImpl_dense(XprType& xpr)
222
+ : Base(xpr.data()), m_xpr(xpr)
223
+ {}
224
+
225
+ /** Dynamic-size constructor
226
+ */
227
+ EIGEN_DEVICE_FUNC
228
+ inline ReshapedImpl_dense(XprType& xpr, Index nRows, Index nCols)
229
+ : Base(xpr.data(), nRows, nCols),
230
+ m_xpr(xpr)
231
+ {}
232
+
233
+ EIGEN_DEVICE_FUNC
234
+ const typename internal::remove_all<XprTypeNested>::type& nestedExpression() const
235
+ {
236
+ return m_xpr;
237
+ }
238
+
239
+ EIGEN_DEVICE_FUNC
240
+ XprType& nestedExpression() { return m_xpr; }
241
+
242
+ /** \sa MapBase::innerStride() */
243
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
244
+ inline Index innerStride() const
245
+ {
246
+ return m_xpr.innerStride();
247
+ }
248
+
249
+ /** \sa MapBase::outerStride() */
250
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
251
+ inline Index outerStride() const
252
+ {
253
+ return ((Flags&RowMajorBit)==RowMajorBit) ? this->cols() : this->rows();
254
+ }
255
+
256
+ protected:
257
+
258
+ XprTypeNested m_xpr;
259
+ };
260
+
261
+ // Evaluators
262
+ template<typename ArgType, int Rows, int Cols, int Order, bool HasDirectAccess> struct reshaped_evaluator;
263
+
264
+ template<typename ArgType, int Rows, int Cols, int Order>
265
+ struct evaluator<Reshaped<ArgType, Rows, Cols, Order> >
266
+ : reshaped_evaluator<ArgType, Rows, Cols, Order, traits<Reshaped<ArgType,Rows,Cols,Order> >::HasDirectAccess>
267
+ {
268
+ typedef Reshaped<ArgType, Rows, Cols, Order> XprType;
269
+ typedef typename XprType::Scalar Scalar;
270
+ // TODO: should check for smaller packet types
271
+ typedef typename packet_traits<Scalar>::type PacketScalar;
272
+
273
+ enum {
274
+ CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
275
+ HasDirectAccess = traits<XprType>::HasDirectAccess,
276
+
277
+ // RowsAtCompileTime = traits<XprType>::RowsAtCompileTime,
278
+ // ColsAtCompileTime = traits<XprType>::ColsAtCompileTime,
279
+ // MaxRowsAtCompileTime = traits<XprType>::MaxRowsAtCompileTime,
280
+ // MaxColsAtCompileTime = traits<XprType>::MaxColsAtCompileTime,
281
+ //
282
+ // InnerStrideAtCompileTime = traits<XprType>::HasSameStorageOrderAsXprType
283
+ // ? int(inner_stride_at_compile_time<ArgType>::ret)
284
+ // : Dynamic,
285
+ // OuterStrideAtCompileTime = Dynamic,
286
+
287
+ FlagsLinearAccessBit = (traits<XprType>::RowsAtCompileTime == 1 || traits<XprType>::ColsAtCompileTime == 1 || HasDirectAccess) ? LinearAccessBit : 0,
288
+ FlagsRowMajorBit = (traits<XprType>::ReshapedStorageOrder==int(RowMajor)) ? RowMajorBit : 0,
289
+ FlagsDirectAccessBit = HasDirectAccess ? DirectAccessBit : 0,
290
+ Flags0 = evaluator<ArgType>::Flags & (HereditaryBits & ~RowMajorBit),
291
+ Flags = Flags0 | FlagsLinearAccessBit | FlagsRowMajorBit | FlagsDirectAccessBit,
292
+
293
+ PacketAlignment = unpacket_traits<PacketScalar>::alignment,
294
+ Alignment = evaluator<ArgType>::Alignment
295
+ };
296
+ typedef reshaped_evaluator<ArgType, Rows, Cols, Order, HasDirectAccess> reshaped_evaluator_type;
297
+ EIGEN_DEVICE_FUNC explicit evaluator(const XprType& xpr) : reshaped_evaluator_type(xpr)
298
+ {
299
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
300
+ }
301
+ };
302
+
303
+ template<typename ArgType, int Rows, int Cols, int Order>
304
+ struct reshaped_evaluator<ArgType, Rows, Cols, Order, /* HasDirectAccess */ false>
305
+ : evaluator_base<Reshaped<ArgType, Rows, Cols, Order> >
306
+ {
307
+ typedef Reshaped<ArgType, Rows, Cols, Order> XprType;
308
+
309
+ enum {
310
+ CoeffReadCost = evaluator<ArgType>::CoeffReadCost /* TODO + cost of index computations */,
311
+
312
+ Flags = (evaluator<ArgType>::Flags & (HereditaryBits /*| LinearAccessBit | DirectAccessBit*/)),
313
+
314
+ Alignment = 0
315
+ };
316
+
317
+ EIGEN_DEVICE_FUNC explicit reshaped_evaluator(const XprType& xpr) : m_argImpl(xpr.nestedExpression()), m_xpr(xpr)
318
+ {
319
+ EIGEN_INTERNAL_CHECK_COST_VALUE(CoeffReadCost);
320
+ }
321
+
322
+ typedef typename XprType::Scalar Scalar;
323
+ typedef typename XprType::CoeffReturnType CoeffReturnType;
324
+
325
+ typedef std::pair<Index, Index> RowCol;
326
+
327
+ inline RowCol index_remap(Index rowId, Index colId) const
328
+ {
329
+ if(Order==ColMajor)
330
+ {
331
+ const Index nth_elem_idx = colId * m_xpr.rows() + rowId;
332
+ return RowCol(nth_elem_idx % m_xpr.nestedExpression().rows(),
333
+ nth_elem_idx / m_xpr.nestedExpression().rows());
334
+ }
335
+ else
336
+ {
337
+ const Index nth_elem_idx = colId + rowId * m_xpr.cols();
338
+ return RowCol(nth_elem_idx / m_xpr.nestedExpression().cols(),
339
+ nth_elem_idx % m_xpr.nestedExpression().cols());
340
+ }
341
+ }
342
+
343
+ EIGEN_DEVICE_FUNC
344
+ inline Scalar& coeffRef(Index rowId, Index colId)
345
+ {
346
+ EIGEN_STATIC_ASSERT_LVALUE(XprType)
347
+ const RowCol row_col = index_remap(rowId, colId);
348
+ return m_argImpl.coeffRef(row_col.first, row_col.second);
349
+ }
350
+
351
+ EIGEN_DEVICE_FUNC
352
+ inline const Scalar& coeffRef(Index rowId, Index colId) const
353
+ {
354
+ const RowCol row_col = index_remap(rowId, colId);
355
+ return m_argImpl.coeffRef(row_col.first, row_col.second);
356
+ }
357
+
358
+ EIGEN_DEVICE_FUNC
359
+ EIGEN_STRONG_INLINE const CoeffReturnType coeff(Index rowId, Index colId) const
360
+ {
361
+ const RowCol row_col = index_remap(rowId, colId);
362
+ return m_argImpl.coeff(row_col.first, row_col.second);
363
+ }
364
+
365
+ EIGEN_DEVICE_FUNC
366
+ inline Scalar& coeffRef(Index index)
367
+ {
368
+ EIGEN_STATIC_ASSERT_LVALUE(XprType)
369
+ const RowCol row_col = index_remap(Rows == 1 ? 0 : index,
370
+ Rows == 1 ? index : 0);
371
+ return m_argImpl.coeffRef(row_col.first, row_col.second);
372
+
373
+ }
374
+
375
+ EIGEN_DEVICE_FUNC
376
+ inline const Scalar& coeffRef(Index index) const
377
+ {
378
+ const RowCol row_col = index_remap(Rows == 1 ? 0 : index,
379
+ Rows == 1 ? index : 0);
380
+ return m_argImpl.coeffRef(row_col.first, row_col.second);
381
+ }
382
+
383
+ EIGEN_DEVICE_FUNC
384
+ inline const CoeffReturnType coeff(Index index) const
385
+ {
386
+ const RowCol row_col = index_remap(Rows == 1 ? 0 : index,
387
+ Rows == 1 ? index : 0);
388
+ return m_argImpl.coeff(row_col.first, row_col.second);
389
+ }
390
+ #if 0
391
+ EIGEN_DEVICE_FUNC
392
+ template<int LoadMode>
393
+ inline PacketScalar packet(Index rowId, Index colId) const
394
+ {
395
+ const RowCol row_col = index_remap(rowId, colId);
396
+ return m_argImpl.template packet<Unaligned>(row_col.first, row_col.second);
397
+
398
+ }
399
+
400
+ template<int LoadMode>
401
+ EIGEN_DEVICE_FUNC
402
+ inline void writePacket(Index rowId, Index colId, const PacketScalar& val)
403
+ {
404
+ const RowCol row_col = index_remap(rowId, colId);
405
+ m_argImpl.const_cast_derived().template writePacket<Unaligned>
406
+ (row_col.first, row_col.second, val);
407
+ }
408
+
409
+ template<int LoadMode>
410
+ EIGEN_DEVICE_FUNC
411
+ inline PacketScalar packet(Index index) const
412
+ {
413
+ const RowCol row_col = index_remap(RowsAtCompileTime == 1 ? 0 : index,
414
+ RowsAtCompileTime == 1 ? index : 0);
415
+ return m_argImpl.template packet<Unaligned>(row_col.first, row_col.second);
416
+ }
417
+
418
+ template<int LoadMode>
419
+ EIGEN_DEVICE_FUNC
420
+ inline void writePacket(Index index, const PacketScalar& val)
421
+ {
422
+ const RowCol row_col = index_remap(RowsAtCompileTime == 1 ? 0 : index,
423
+ RowsAtCompileTime == 1 ? index : 0);
424
+ return m_argImpl.template packet<Unaligned>(row_col.first, row_col.second, val);
425
+ }
426
+ #endif
427
+ protected:
428
+
429
+ evaluator<ArgType> m_argImpl;
430
+ const XprType& m_xpr;
431
+
432
+ };
433
+
434
+ template<typename ArgType, int Rows, int Cols, int Order>
435
+ struct reshaped_evaluator<ArgType, Rows, Cols, Order, /* HasDirectAccess */ true>
436
+ : mapbase_evaluator<Reshaped<ArgType, Rows, Cols, Order>,
437
+ typename Reshaped<ArgType, Rows, Cols, Order>::PlainObject>
438
+ {
439
+ typedef Reshaped<ArgType, Rows, Cols, Order> XprType;
440
+ typedef typename XprType::Scalar Scalar;
441
+
442
+ EIGEN_DEVICE_FUNC explicit reshaped_evaluator(const XprType& xpr)
443
+ : mapbase_evaluator<XprType, typename XprType::PlainObject>(xpr)
444
+ {
445
+ // TODO: for the 3.4 release, this should be turned to an internal assertion, but let's keep it as is for the beta lifetime
446
+ eigen_assert(((internal::UIntPtr(xpr.data()) % EIGEN_PLAIN_ENUM_MAX(1,evaluator<XprType>::Alignment)) == 0) && "data is not aligned");
447
+ }
448
+ };
449
+
450
+ } // end namespace internal
451
+
452
+ } // end namespace Eigen
453
+
454
+ #endif // EIGEN_RESHAPED_H
@@ -60,8 +60,10 @@ template<typename Derived> class ReturnByValue
60
60
  EIGEN_DEVICE_FUNC
61
61
  inline void evalTo(Dest& dst) const
62
62
  { static_cast<const Derived*>(this)->evalTo(dst); }
63
- EIGEN_DEVICE_FUNC inline Index rows() const { return static_cast<const Derived*>(this)->rows(); }
64
- EIGEN_DEVICE_FUNC inline Index cols() const { return static_cast<const Derived*>(this)->cols(); }
63
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
64
+ inline Index rows() const EIGEN_NOEXCEPT { return static_cast<const Derived*>(this)->rows(); }
65
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
66
+ inline Index cols() const EIGEN_NOEXCEPT { return static_cast<const Derived*>(this)->cols(); }
65
67
 
66
68
  #ifndef EIGEN_PARSED_BY_DOXYGEN
67
69
  #define Unusable YOU_ARE_TRYING_TO_ACCESS_A_SINGLE_COEFFICIENT_IN_A_SPECIAL_EXPRESSION_WHERE_THAT_IS_NOT_ALLOWED_BECAUSE_THAT_WOULD_BE_INEFFICIENT
@@ -79,7 +81,7 @@ template<typename Derived> class ReturnByValue
79
81
 
80
82
  template<typename Derived>
81
83
  template<typename OtherDerived>
82
- Derived& DenseBase<Derived>::operator=(const ReturnByValue<OtherDerived>& other)
84
+ EIGEN_DEVICE_FUNC Derived& DenseBase<Derived>::operator=(const ReturnByValue<OtherDerived>& other)
83
85
  {
84
86
  other.evalTo(derived());
85
87
  return derived();
@@ -90,7 +92,7 @@ namespace internal {
90
92
  // Expression is evaluated in a temporary; default implementation of Assignment is bypassed so that
91
93
  // when a ReturnByValue expression is assigned, the evaluator is not constructed.
92
94
  // TODO: Finalize port to new regime; ReturnByValue should not exist in the expression world
93
-
95
+
94
96
  template<typename Derived>
95
97
  struct evaluator<ReturnByValue<Derived> >
96
98
  : public evaluator<typename internal::traits<Derived>::ReturnType>
@@ -98,7 +100,7 @@ struct evaluator<ReturnByValue<Derived> >
98
100
  typedef ReturnByValue<Derived> XprType;
99
101
  typedef typename internal::traits<Derived>::ReturnType PlainObject;
100
102
  typedef evaluator<PlainObject> Base;
101
-
103
+
102
104
  EIGEN_DEVICE_FUNC explicit evaluator(const XprType& xpr)
103
105
  : m_result(xpr.rows(), xpr.cols())
104
106
  {
@@ -12,7 +12,7 @@
12
12
  #ifndef EIGEN_REVERSE_H
13
13
  #define EIGEN_REVERSE_H
14
14
 
15
- namespace Eigen {
15
+ namespace Eigen {
16
16
 
17
17
  namespace internal {
18
18
 
@@ -44,7 +44,7 @@ template<typename PacketType> struct reverse_packet_cond<PacketType,false>
44
44
  static inline PacketType run(const PacketType& x) { return x; }
45
45
  };
46
46
 
47
- } // end namespace internal
47
+ } // end namespace internal
48
48
 
49
49
  /** \class Reverse
50
50
  * \ingroup Core_Module
@@ -89,8 +89,10 @@ template<typename MatrixType, int Direction> class Reverse
89
89
 
90
90
  EIGEN_INHERIT_ASSIGNMENT_OPERATORS(Reverse)
91
91
 
92
- EIGEN_DEVICE_FUNC inline Index rows() const { return m_matrix.rows(); }
93
- EIGEN_DEVICE_FUNC inline Index cols() const { return m_matrix.cols(); }
92
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
93
+ inline Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
94
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
95
+ inline Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
94
96
 
95
97
  EIGEN_DEVICE_FUNC inline Index innerStride() const
96
98
  {
@@ -98,7 +100,7 @@ template<typename MatrixType, int Direction> class Reverse
98
100
  }
99
101
 
100
102
  EIGEN_DEVICE_FUNC const typename internal::remove_all<typename MatrixType::Nested>::type&
101
- nestedExpression() const
103
+ nestedExpression() const
102
104
  {
103
105
  return m_matrix;
104
106
  }
@@ -114,7 +116,7 @@ template<typename MatrixType, int Direction> class Reverse
114
116
  *
115
117
  */
116
118
  template<typename Derived>
117
- inline typename DenseBase<Derived>::ReverseReturnType
119
+ EIGEN_DEVICE_FUNC inline typename DenseBase<Derived>::ReverseReturnType
118
120
  DenseBase<Derived>::reverse()
119
121
  {
120
122
  return ReverseReturnType(derived());
@@ -136,7 +138,7 @@ DenseBase<Derived>::reverse()
136
138
  *
137
139
  * \sa VectorwiseOp::reverseInPlace(), reverse() */
138
140
  template<typename Derived>
139
- inline void DenseBase<Derived>::reverseInPlace()
141
+ EIGEN_DEVICE_FUNC inline void DenseBase<Derived>::reverseInPlace()
140
142
  {
141
143
  if(cols()>rows())
142
144
  {
@@ -161,7 +163,7 @@ inline void DenseBase<Derived>::reverseInPlace()
161
163
  }
162
164
 
163
165
  namespace internal {
164
-
166
+
165
167
  template<int Direction>
166
168
  struct vectorwise_reverse_inplace_impl;
167
169
 
@@ -171,8 +173,10 @@ struct vectorwise_reverse_inplace_impl<Vertical>
171
173
  template<typename ExpressionType>
172
174
  static void run(ExpressionType &xpr)
173
175
  {
176
+ const int HalfAtCompileTime = ExpressionType::RowsAtCompileTime==Dynamic?Dynamic:ExpressionType::RowsAtCompileTime/2;
174
177
  Index half = xpr.rows()/2;
175
- xpr.topRows(half).swap(xpr.bottomRows(half).colwise().reverse());
178
+ xpr.topRows(fix<HalfAtCompileTime>(half))
179
+ .swap(xpr.bottomRows(fix<HalfAtCompileTime>(half)).colwise().reverse());
176
180
  }
177
181
  };
178
182
 
@@ -182,8 +186,10 @@ struct vectorwise_reverse_inplace_impl<Horizontal>
182
186
  template<typename ExpressionType>
183
187
  static void run(ExpressionType &xpr)
184
188
  {
189
+ const int HalfAtCompileTime = ExpressionType::ColsAtCompileTime==Dynamic?Dynamic:ExpressionType::ColsAtCompileTime/2;
185
190
  Index half = xpr.cols()/2;
186
- xpr.leftCols(half).swap(xpr.rightCols(half).rowwise().reverse());
191
+ xpr.leftCols(fix<HalfAtCompileTime>(half))
192
+ .swap(xpr.rightCols(fix<HalfAtCompileTime>(half)).rowwise().reverse());
187
193
  }
188
194
  };
189
195
 
@@ -201,9 +207,9 @@ struct vectorwise_reverse_inplace_impl<Horizontal>
201
207
  *
202
208
  * \sa DenseBase::reverseInPlace(), reverse() */
203
209
  template<typename ExpressionType, int Direction>
204
- void VectorwiseOp<ExpressionType,Direction>::reverseInPlace()
210
+ EIGEN_DEVICE_FUNC void VectorwiseOp<ExpressionType,Direction>::reverseInPlace()
205
211
  {
206
- internal::vectorwise_reverse_inplace_impl<Direction>::run(_expression().const_cast_derived());
212
+ internal::vectorwise_reverse_inplace_impl<Direction>::run(m_matrix);
207
213
  }
208
214
 
209
215
  } // end namespace Eigen
@@ -10,7 +10,7 @@
10
10
  #ifndef EIGEN_SELECT_H
11
11
  #define EIGEN_SELECT_H
12
12
 
13
- namespace Eigen {
13
+ namespace Eigen {
14
14
 
15
15
  /** \class Select
16
16
  * \ingroup Core_Module
@@ -67,8 +67,10 @@ class Select : public internal::dense_xpr_base< Select<ConditionMatrixType, Then
67
67
  eigen_assert(m_condition.cols() == m_then.cols() && m_condition.cols() == m_else.cols());
68
68
  }
69
69
 
70
- inline EIGEN_DEVICE_FUNC Index rows() const { return m_condition.rows(); }
71
- inline EIGEN_DEVICE_FUNC Index cols() const { return m_condition.cols(); }
70
+ inline EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
71
+ Index rows() const EIGEN_NOEXCEPT { return m_condition.rows(); }
72
+ inline EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
73
+ Index cols() const EIGEN_NOEXCEPT { return m_condition.cols(); }
72
74
 
73
75
  inline EIGEN_DEVICE_FUNC
74
76
  const Scalar coeff(Index i, Index j) const
@@ -120,7 +122,7 @@ class Select : public internal::dense_xpr_base< Select<ConditionMatrixType, Then
120
122
  */
121
123
  template<typename Derived>
122
124
  template<typename ThenDerived,typename ElseDerived>
123
- inline const Select<Derived,ThenDerived,ElseDerived>
125
+ inline EIGEN_DEVICE_FUNC const Select<Derived,ThenDerived,ElseDerived>
124
126
  DenseBase<Derived>::select(const DenseBase<ThenDerived>& thenMatrix,
125
127
  const DenseBase<ElseDerived>& elseMatrix) const
126
128
  {
@@ -134,7 +136,7 @@ DenseBase<Derived>::select(const DenseBase<ThenDerived>& thenMatrix,
134
136
  */
135
137
  template<typename Derived>
136
138
  template<typename ThenDerived>
137
- inline const Select<Derived,ThenDerived, typename ThenDerived::ConstantReturnType>
139
+ inline EIGEN_DEVICE_FUNC const Select<Derived,ThenDerived, typename ThenDerived::ConstantReturnType>
138
140
  DenseBase<Derived>::select(const DenseBase<ThenDerived>& thenMatrix,
139
141
  const typename ThenDerived::Scalar& elseScalar) const
140
142
  {
@@ -149,7 +151,7 @@ DenseBase<Derived>::select(const DenseBase<ThenDerived>& thenMatrix,
149
151
  */
150
152
  template<typename Derived>
151
153
  template<typename ElseDerived>
152
- inline const Select<Derived, typename ElseDerived::ConstantReturnType, ElseDerived >
154
+ inline EIGEN_DEVICE_FUNC const Select<Derived, typename ElseDerived::ConstantReturnType, ElseDerived >
153
155
  DenseBase<Derived>::select(const typename ElseDerived::Scalar& thenScalar,
154
156
  const DenseBase<ElseDerived>& elseMatrix) const
155
157
  {