tomoto 0.2.2 → 0.3.0

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Files changed (369) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +10 -0
  3. data/README.md +8 -10
  4. data/ext/tomoto/ct.cpp +11 -11
  5. data/ext/tomoto/dmr.cpp +14 -13
  6. data/ext/tomoto/dt.cpp +14 -14
  7. data/ext/tomoto/extconf.rb +7 -5
  8. data/ext/tomoto/gdmr.cpp +7 -7
  9. data/ext/tomoto/hdp.cpp +9 -9
  10. data/ext/tomoto/hlda.cpp +13 -13
  11. data/ext/tomoto/hpa.cpp +5 -5
  12. data/ext/tomoto/lda.cpp +42 -39
  13. data/ext/tomoto/llda.cpp +6 -6
  14. data/ext/tomoto/mglda.cpp +15 -15
  15. data/ext/tomoto/pa.cpp +6 -6
  16. data/ext/tomoto/plda.cpp +6 -6
  17. data/ext/tomoto/slda.cpp +8 -8
  18. data/ext/tomoto/{ext.cpp → tomoto.cpp} +8 -8
  19. data/ext/tomoto/utils.h +16 -70
  20. data/lib/tomoto/version.rb +1 -1
  21. data/lib/tomoto.rb +5 -1
  22. data/vendor/EigenRand/EigenRand/Core.h +10 -10
  23. data/vendor/EigenRand/EigenRand/Dists/Basic.h +208 -9
  24. data/vendor/EigenRand/EigenRand/Dists/Discrete.h +52 -31
  25. data/vendor/EigenRand/EigenRand/Dists/GammaPoisson.h +9 -8
  26. data/vendor/EigenRand/EigenRand/Dists/NormalExp.h +28 -21
  27. data/vendor/EigenRand/EigenRand/EigenRand +11 -6
  28. data/vendor/EigenRand/EigenRand/Macro.h +13 -7
  29. data/vendor/EigenRand/EigenRand/MorePacketMath.h +348 -740
  30. data/vendor/EigenRand/EigenRand/MvDists/Multinomial.h +5 -3
  31. data/vendor/EigenRand/EigenRand/MvDists/MvNormal.h +9 -3
  32. data/vendor/EigenRand/EigenRand/PacketFilter.h +11 -253
  33. data/vendor/EigenRand/EigenRand/PacketRandomEngine.h +21 -47
  34. data/vendor/EigenRand/EigenRand/RandUtils.h +50 -344
  35. data/vendor/EigenRand/EigenRand/arch/AVX/MorePacketMath.h +619 -0
  36. data/vendor/EigenRand/EigenRand/arch/AVX/PacketFilter.h +149 -0
  37. data/vendor/EigenRand/EigenRand/arch/AVX/RandUtils.h +228 -0
  38. data/vendor/EigenRand/EigenRand/arch/NEON/MorePacketMath.h +473 -0
  39. data/vendor/EigenRand/EigenRand/arch/NEON/PacketFilter.h +142 -0
  40. data/vendor/EigenRand/EigenRand/arch/NEON/RandUtils.h +126 -0
  41. data/vendor/EigenRand/EigenRand/arch/SSE/MorePacketMath.h +501 -0
  42. data/vendor/EigenRand/EigenRand/arch/SSE/PacketFilter.h +133 -0
  43. data/vendor/EigenRand/EigenRand/arch/SSE/RandUtils.h +120 -0
  44. data/vendor/EigenRand/EigenRand/doc.h +24 -12
  45. data/vendor/EigenRand/README.md +57 -4
  46. data/vendor/eigen/COPYING.APACHE +203 -0
  47. data/vendor/eigen/COPYING.BSD +1 -1
  48. data/vendor/eigen/COPYING.MINPACK +51 -52
  49. data/vendor/eigen/Eigen/Cholesky +0 -1
  50. data/vendor/eigen/Eigen/Core +112 -265
  51. data/vendor/eigen/Eigen/Eigenvalues +2 -3
  52. data/vendor/eigen/Eigen/Geometry +5 -8
  53. data/vendor/eigen/Eigen/Householder +0 -1
  54. data/vendor/eigen/Eigen/Jacobi +0 -1
  55. data/vendor/eigen/Eigen/KLUSupport +41 -0
  56. data/vendor/eigen/Eigen/LU +2 -5
  57. data/vendor/eigen/Eigen/OrderingMethods +0 -3
  58. data/vendor/eigen/Eigen/PaStiXSupport +1 -0
  59. data/vendor/eigen/Eigen/PardisoSupport +0 -0
  60. data/vendor/eigen/Eigen/QR +2 -3
  61. data/vendor/eigen/Eigen/QtAlignedMalloc +0 -1
  62. data/vendor/eigen/Eigen/SVD +0 -1
  63. data/vendor/eigen/Eigen/Sparse +0 -2
  64. data/vendor/eigen/Eigen/SparseCholesky +0 -8
  65. data/vendor/eigen/Eigen/SparseLU +4 -0
  66. data/vendor/eigen/Eigen/SparseQR +0 -1
  67. data/vendor/eigen/Eigen/src/Cholesky/LDLT.h +42 -27
  68. data/vendor/eigen/Eigen/src/Cholesky/LLT.h +39 -23
  69. data/vendor/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +90 -47
  70. data/vendor/eigen/Eigen/src/Core/ArithmeticSequence.h +413 -0
  71. data/vendor/eigen/Eigen/src/Core/Array.h +99 -11
  72. data/vendor/eigen/Eigen/src/Core/ArrayBase.h +3 -3
  73. data/vendor/eigen/Eigen/src/Core/ArrayWrapper.h +21 -21
  74. data/vendor/eigen/Eigen/src/Core/Assign.h +1 -1
  75. data/vendor/eigen/Eigen/src/Core/AssignEvaluator.h +125 -50
  76. data/vendor/eigen/Eigen/src/Core/Assign_MKL.h +10 -10
  77. data/vendor/eigen/Eigen/src/Core/BandMatrix.h +16 -16
  78. data/vendor/eigen/Eigen/src/Core/Block.h +56 -60
  79. data/vendor/eigen/Eigen/src/Core/BooleanRedux.h +29 -31
  80. data/vendor/eigen/Eigen/src/Core/CommaInitializer.h +7 -3
  81. data/vendor/eigen/Eigen/src/Core/CoreEvaluators.h +325 -272
  82. data/vendor/eigen/Eigen/src/Core/CoreIterators.h +5 -0
  83. data/vendor/eigen/Eigen/src/Core/CwiseBinaryOp.h +21 -22
  84. data/vendor/eigen/Eigen/src/Core/CwiseNullaryOp.h +153 -18
  85. data/vendor/eigen/Eigen/src/Core/CwiseUnaryOp.h +6 -6
  86. data/vendor/eigen/Eigen/src/Core/CwiseUnaryView.h +14 -10
  87. data/vendor/eigen/Eigen/src/Core/DenseBase.h +132 -42
  88. data/vendor/eigen/Eigen/src/Core/DenseCoeffsBase.h +25 -21
  89. data/vendor/eigen/Eigen/src/Core/DenseStorage.h +153 -71
  90. data/vendor/eigen/Eigen/src/Core/Diagonal.h +21 -23
  91. data/vendor/eigen/Eigen/src/Core/DiagonalMatrix.h +50 -2
  92. data/vendor/eigen/Eigen/src/Core/DiagonalProduct.h +1 -1
  93. data/vendor/eigen/Eigen/src/Core/Dot.h +10 -10
  94. data/vendor/eigen/Eigen/src/Core/EigenBase.h +10 -9
  95. data/vendor/eigen/Eigen/src/Core/ForceAlignedAccess.h +8 -4
  96. data/vendor/eigen/Eigen/src/Core/Fuzzy.h +3 -3
  97. data/vendor/eigen/Eigen/src/Core/GeneralProduct.h +20 -10
  98. data/vendor/eigen/Eigen/src/Core/GenericPacketMath.h +599 -152
  99. data/vendor/eigen/Eigen/src/Core/GlobalFunctions.h +40 -33
  100. data/vendor/eigen/Eigen/src/Core/IO.h +40 -7
  101. data/vendor/eigen/Eigen/src/Core/IndexedView.h +237 -0
  102. data/vendor/eigen/Eigen/src/Core/Inverse.h +9 -10
  103. data/vendor/eigen/Eigen/src/Core/Map.h +7 -7
  104. data/vendor/eigen/Eigen/src/Core/MapBase.h +10 -3
  105. data/vendor/eigen/Eigen/src/Core/MathFunctions.h +767 -125
  106. data/vendor/eigen/Eigen/src/Core/MathFunctionsImpl.h +118 -19
  107. data/vendor/eigen/Eigen/src/Core/Matrix.h +131 -25
  108. data/vendor/eigen/Eigen/src/Core/MatrixBase.h +21 -3
  109. data/vendor/eigen/Eigen/src/Core/NestByValue.h +25 -50
  110. data/vendor/eigen/Eigen/src/Core/NoAlias.h +4 -3
  111. data/vendor/eigen/Eigen/src/Core/NumTraits.h +107 -20
  112. data/vendor/eigen/Eigen/src/Core/PartialReduxEvaluator.h +232 -0
  113. data/vendor/eigen/Eigen/src/Core/PermutationMatrix.h +3 -31
  114. data/vendor/eigen/Eigen/src/Core/PlainObjectBase.h +152 -59
  115. data/vendor/eigen/Eigen/src/Core/Product.h +30 -25
  116. data/vendor/eigen/Eigen/src/Core/ProductEvaluators.h +192 -125
  117. data/vendor/eigen/Eigen/src/Core/Random.h +37 -1
  118. data/vendor/eigen/Eigen/src/Core/Redux.h +180 -170
  119. data/vendor/eigen/Eigen/src/Core/Ref.h +121 -23
  120. data/vendor/eigen/Eigen/src/Core/Replicate.h +8 -8
  121. data/vendor/eigen/Eigen/src/Core/Reshaped.h +454 -0
  122. data/vendor/eigen/Eigen/src/Core/ReturnByValue.h +7 -5
  123. data/vendor/eigen/Eigen/src/Core/Reverse.h +18 -12
  124. data/vendor/eigen/Eigen/src/Core/Select.h +8 -6
  125. data/vendor/eigen/Eigen/src/Core/SelfAdjointView.h +33 -20
  126. data/vendor/eigen/Eigen/src/Core/Solve.h +14 -14
  127. data/vendor/eigen/Eigen/src/Core/SolveTriangular.h +16 -16
  128. data/vendor/eigen/Eigen/src/Core/SolverBase.h +41 -3
  129. data/vendor/eigen/Eigen/src/Core/StableNorm.h +100 -70
  130. data/vendor/eigen/Eigen/src/Core/StlIterators.h +463 -0
  131. data/vendor/eigen/Eigen/src/Core/Stride.h +9 -4
  132. data/vendor/eigen/Eigen/src/Core/Swap.h +5 -4
  133. data/vendor/eigen/Eigen/src/Core/Transpose.h +88 -27
  134. data/vendor/eigen/Eigen/src/Core/Transpositions.h +26 -47
  135. data/vendor/eigen/Eigen/src/Core/TriangularMatrix.h +93 -75
  136. data/vendor/eigen/Eigen/src/Core/VectorBlock.h +5 -5
  137. data/vendor/eigen/Eigen/src/Core/VectorwiseOp.h +159 -70
  138. data/vendor/eigen/Eigen/src/Core/Visitor.h +137 -29
  139. data/vendor/eigen/Eigen/src/Core/arch/AVX/Complex.h +50 -129
  140. data/vendor/eigen/Eigen/src/Core/arch/AVX/MathFunctions.h +126 -337
  141. data/vendor/eigen/Eigen/src/Core/arch/AVX/PacketMath.h +1092 -155
  142. data/vendor/eigen/Eigen/src/Core/arch/AVX/TypeCasting.h +65 -1
  143. data/vendor/eigen/Eigen/src/Core/arch/AVX512/Complex.h +422 -0
  144. data/vendor/eigen/Eigen/src/Core/arch/AVX512/MathFunctions.h +207 -236
  145. data/vendor/eigen/Eigen/src/Core/arch/AVX512/PacketMath.h +1482 -495
  146. data/vendor/eigen/Eigen/src/Core/arch/AVX512/TypeCasting.h +89 -0
  147. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/Complex.h +152 -165
  148. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MathFunctions.h +19 -251
  149. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProduct.h +2937 -0
  150. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h +221 -0
  151. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h +629 -0
  152. data/vendor/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h +2042 -392
  153. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Complex.h +235 -80
  154. data/vendor/eigen/Eigen/src/Core/arch/Default/BFloat16.h +700 -0
  155. data/vendor/eigen/Eigen/src/Core/arch/Default/ConjHelper.h +102 -14
  156. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h +1649 -0
  157. data/vendor/eigen/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h +110 -0
  158. data/vendor/eigen/Eigen/src/Core/arch/Default/Half.h +942 -0
  159. data/vendor/eigen/Eigen/src/Core/arch/Default/Settings.h +1 -1
  160. data/vendor/eigen/Eigen/src/Core/arch/Default/TypeCasting.h +120 -0
  161. data/vendor/eigen/Eigen/src/Core/arch/{CUDA → GPU}/MathFunctions.h +16 -4
  162. data/vendor/eigen/Eigen/src/Core/arch/GPU/PacketMath.h +1685 -0
  163. data/vendor/eigen/Eigen/src/Core/arch/GPU/TypeCasting.h +80 -0
  164. data/vendor/eigen/Eigen/src/Core/arch/HIP/hcc/math_constants.h +23 -0
  165. data/vendor/eigen/Eigen/src/Core/arch/MSA/Complex.h +648 -0
  166. data/vendor/eigen/Eigen/src/Core/arch/MSA/MathFunctions.h +387 -0
  167. data/vendor/eigen/Eigen/src/Core/arch/MSA/PacketMath.h +1233 -0
  168. data/vendor/eigen/Eigen/src/Core/arch/NEON/Complex.h +313 -219
  169. data/vendor/eigen/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h +183 -0
  170. data/vendor/eigen/Eigen/src/Core/arch/NEON/MathFunctions.h +54 -70
  171. data/vendor/eigen/Eigen/src/Core/arch/NEON/PacketMath.h +4376 -549
  172. data/vendor/eigen/Eigen/src/Core/arch/NEON/TypeCasting.h +1419 -0
  173. data/vendor/eigen/Eigen/src/Core/arch/SSE/Complex.h +59 -179
  174. data/vendor/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h +65 -428
  175. data/vendor/eigen/Eigen/src/Core/arch/SSE/PacketMath.h +893 -283
  176. data/vendor/eigen/Eigen/src/Core/arch/SSE/TypeCasting.h +65 -0
  177. data/vendor/eigen/Eigen/src/Core/arch/SVE/MathFunctions.h +44 -0
  178. data/vendor/eigen/Eigen/src/Core/arch/SVE/PacketMath.h +752 -0
  179. data/vendor/eigen/Eigen/src/Core/arch/SVE/TypeCasting.h +49 -0
  180. data/vendor/eigen/Eigen/src/Core/arch/SYCL/InteropHeaders.h +232 -0
  181. data/vendor/eigen/Eigen/src/Core/arch/SYCL/MathFunctions.h +301 -0
  182. data/vendor/eigen/Eigen/src/Core/arch/SYCL/PacketMath.h +670 -0
  183. data/vendor/eigen/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h +694 -0
  184. data/vendor/eigen/Eigen/src/Core/arch/SYCL/TypeCasting.h +85 -0
  185. data/vendor/eigen/Eigen/src/Core/arch/ZVector/Complex.h +212 -183
  186. data/vendor/eigen/Eigen/src/Core/arch/ZVector/MathFunctions.h +101 -5
  187. data/vendor/eigen/Eigen/src/Core/arch/ZVector/PacketMath.h +510 -395
  188. data/vendor/eigen/Eigen/src/Core/functors/AssignmentFunctors.h +11 -2
  189. data/vendor/eigen/Eigen/src/Core/functors/BinaryFunctors.h +112 -46
  190. data/vendor/eigen/Eigen/src/Core/functors/NullaryFunctors.h +31 -30
  191. data/vendor/eigen/Eigen/src/Core/functors/StlFunctors.h +32 -2
  192. data/vendor/eigen/Eigen/src/Core/functors/UnaryFunctors.h +355 -16
  193. data/vendor/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h +1075 -586
  194. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h +49 -24
  195. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h +41 -35
  196. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h +6 -6
  197. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h +4 -2
  198. data/vendor/eigen/Eigen/src/Core/products/GeneralMatrixVector.h +382 -483
  199. data/vendor/eigen/Eigen/src/Core/products/Parallelizer.h +22 -5
  200. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h +53 -30
  201. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h +16 -8
  202. data/vendor/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h +8 -6
  203. data/vendor/eigen/Eigen/src/Core/products/SelfadjointProduct.h +4 -4
  204. data/vendor/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h +5 -4
  205. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h +33 -27
  206. data/vendor/eigen/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h +14 -12
  207. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h +36 -34
  208. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h +8 -4
  209. data/vendor/eigen/Eigen/src/Core/products/TriangularSolverVector.h +13 -10
  210. data/vendor/eigen/Eigen/src/Core/util/BlasUtil.h +304 -119
  211. data/vendor/eigen/Eigen/src/Core/util/ConfigureVectorization.h +512 -0
  212. data/vendor/eigen/Eigen/src/Core/util/Constants.h +25 -9
  213. data/vendor/eigen/Eigen/src/Core/util/DisableStupidWarnings.h +26 -3
  214. data/vendor/eigen/Eigen/src/Core/util/ForwardDeclarations.h +29 -9
  215. data/vendor/eigen/Eigen/src/Core/util/IndexedViewHelper.h +186 -0
  216. data/vendor/eigen/Eigen/src/Core/util/IntegralConstant.h +272 -0
  217. data/vendor/eigen/Eigen/src/Core/util/MKL_support.h +8 -1
  218. data/vendor/eigen/Eigen/src/Core/util/Macros.h +709 -246
  219. data/vendor/eigen/Eigen/src/Core/util/Memory.h +222 -52
  220. data/vendor/eigen/Eigen/src/Core/util/Meta.h +355 -77
  221. data/vendor/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h +5 -1
  222. data/vendor/eigen/Eigen/src/Core/util/ReshapedHelper.h +51 -0
  223. data/vendor/eigen/Eigen/src/Core/util/StaticAssert.h +8 -5
  224. data/vendor/eigen/Eigen/src/Core/util/SymbolicIndex.h +293 -0
  225. data/vendor/eigen/Eigen/src/Core/util/XprHelper.h +65 -30
  226. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +1 -1
  227. data/vendor/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +7 -4
  228. data/vendor/eigen/Eigen/src/Eigenvalues/EigenSolver.h +2 -2
  229. data/vendor/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +1 -1
  230. data/vendor/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +2 -2
  231. data/vendor/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +2 -2
  232. data/vendor/eigen/Eigen/src/Eigenvalues/RealQZ.h +9 -6
  233. data/vendor/eigen/Eigen/src/Eigenvalues/RealSchur.h +21 -9
  234. data/vendor/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +77 -43
  235. data/vendor/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +20 -15
  236. data/vendor/eigen/Eigen/src/Geometry/AlignedBox.h +99 -5
  237. data/vendor/eigen/Eigen/src/Geometry/AngleAxis.h +4 -4
  238. data/vendor/eigen/Eigen/src/Geometry/EulerAngles.h +3 -3
  239. data/vendor/eigen/Eigen/src/Geometry/Homogeneous.h +15 -11
  240. data/vendor/eigen/Eigen/src/Geometry/Hyperplane.h +1 -1
  241. data/vendor/eigen/Eigen/src/Geometry/OrthoMethods.h +3 -2
  242. data/vendor/eigen/Eigen/src/Geometry/ParametrizedLine.h +39 -2
  243. data/vendor/eigen/Eigen/src/Geometry/Quaternion.h +70 -14
  244. data/vendor/eigen/Eigen/src/Geometry/Rotation2D.h +3 -3
  245. data/vendor/eigen/Eigen/src/Geometry/Scaling.h +23 -5
  246. data/vendor/eigen/Eigen/src/Geometry/Transform.h +88 -67
  247. data/vendor/eigen/Eigen/src/Geometry/Translation.h +6 -12
  248. data/vendor/eigen/Eigen/src/Geometry/Umeyama.h +1 -1
  249. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +168 -0
  250. data/vendor/eigen/Eigen/src/Householder/BlockHouseholder.h +9 -2
  251. data/vendor/eigen/Eigen/src/Householder/Householder.h +8 -4
  252. data/vendor/eigen/Eigen/src/Householder/HouseholderSequence.h +123 -48
  253. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +15 -15
  254. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +7 -23
  255. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +5 -22
  256. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +41 -47
  257. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +51 -60
  258. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +70 -20
  259. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +2 -20
  260. data/vendor/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +11 -9
  261. data/vendor/eigen/Eigen/src/Jacobi/Jacobi.h +31 -10
  262. data/vendor/eigen/Eigen/src/KLUSupport/KLUSupport.h +358 -0
  263. data/vendor/eigen/Eigen/src/LU/Determinant.h +35 -19
  264. data/vendor/eigen/Eigen/src/LU/FullPivLU.h +29 -43
  265. data/vendor/eigen/Eigen/src/LU/InverseImpl.h +25 -8
  266. data/vendor/eigen/Eigen/src/LU/PartialPivLU.h +71 -58
  267. data/vendor/eigen/Eigen/src/LU/arch/InverseSize4.h +351 -0
  268. data/vendor/eigen/Eigen/src/OrderingMethods/Amd.h +7 -17
  269. data/vendor/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +297 -277
  270. data/vendor/eigen/Eigen/src/OrderingMethods/Ordering.h +6 -10
  271. data/vendor/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +1 -1
  272. data/vendor/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +9 -7
  273. data/vendor/eigen/Eigen/src/QR/ColPivHouseholderQR.h +41 -20
  274. data/vendor/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +100 -27
  275. data/vendor/eigen/Eigen/src/QR/FullPivHouseholderQR.h +59 -22
  276. data/vendor/eigen/Eigen/src/QR/HouseholderQR.h +48 -23
  277. data/vendor/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +25 -3
  278. data/vendor/eigen/Eigen/src/SVD/BDCSVD.h +183 -63
  279. data/vendor/eigen/Eigen/src/SVD/JacobiSVD.h +22 -14
  280. data/vendor/eigen/Eigen/src/SVD/SVDBase.h +83 -22
  281. data/vendor/eigen/Eigen/src/SVD/UpperBidiagonalization.h +3 -3
  282. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +17 -9
  283. data/vendor/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +12 -37
  284. data/vendor/eigen/Eigen/src/SparseCore/AmbiVector.h +3 -2
  285. data/vendor/eigen/Eigen/src/SparseCore/CompressedStorage.h +16 -0
  286. data/vendor/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +6 -6
  287. data/vendor/eigen/Eigen/src/SparseCore/SparseAssign.h +81 -27
  288. data/vendor/eigen/Eigen/src/SparseCore/SparseBlock.h +25 -57
  289. data/vendor/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +40 -11
  290. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +11 -15
  291. data/vendor/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +4 -2
  292. data/vendor/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +30 -8
  293. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrix.h +126 -11
  294. data/vendor/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +5 -12
  295. data/vendor/eigen/Eigen/src/SparseCore/SparseProduct.h +13 -1
  296. data/vendor/eigen/Eigen/src/SparseCore/SparseRef.h +7 -7
  297. data/vendor/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +5 -2
  298. data/vendor/eigen/Eigen/src/SparseCore/SparseUtil.h +8 -0
  299. data/vendor/eigen/Eigen/src/SparseCore/SparseVector.h +1 -1
  300. data/vendor/eigen/Eigen/src/SparseCore/SparseView.h +1 -0
  301. data/vendor/eigen/Eigen/src/SparseLU/SparseLU.h +162 -12
  302. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +1 -1
  303. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +76 -2
  304. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +2 -2
  305. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +1 -1
  306. data/vendor/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +1 -1
  307. data/vendor/eigen/Eigen/src/SparseQR/SparseQR.h +19 -6
  308. data/vendor/eigen/Eigen/src/StlSupport/StdDeque.h +2 -12
  309. data/vendor/eigen/Eigen/src/StlSupport/StdList.h +2 -2
  310. data/vendor/eigen/Eigen/src/StlSupport/StdVector.h +2 -2
  311. data/vendor/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +6 -8
  312. data/vendor/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +175 -39
  313. data/vendor/eigen/Eigen/src/misc/lapacke.h +5 -4
  314. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +28 -2
  315. data/vendor/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +155 -11
  316. data/vendor/eigen/Eigen/src/plugins/BlockMethods.h +626 -242
  317. data/vendor/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +14 -0
  318. data/vendor/eigen/Eigen/src/plugins/IndexedViewMethods.h +262 -0
  319. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +4 -4
  320. data/vendor/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +10 -0
  321. data/vendor/eigen/Eigen/src/plugins/ReshapedMethods.h +149 -0
  322. data/vendor/eigen/README.md +2 -0
  323. data/vendor/eigen/bench/btl/README +1 -1
  324. data/vendor/eigen/bench/tensors/README +6 -7
  325. data/vendor/eigen/ci/README.md +56 -0
  326. data/vendor/eigen/demos/mix_eigen_and_c/README +1 -1
  327. data/vendor/eigen/unsupported/Eigen/CXX11/src/Tensor/README.md +213 -158
  328. data/vendor/eigen/unsupported/README.txt +1 -1
  329. data/vendor/tomotopy/README.kr.rst +78 -0
  330. data/vendor/tomotopy/README.rst +75 -0
  331. data/vendor/tomotopy/src/Labeling/FoRelevance.cpp +2 -2
  332. data/vendor/tomotopy/src/Labeling/Phraser.hpp +4 -4
  333. data/vendor/tomotopy/src/TopicModel/CTModel.hpp +7 -3
  334. data/vendor/tomotopy/src/TopicModel/DMRModel.hpp +7 -3
  335. data/vendor/tomotopy/src/TopicModel/DTModel.hpp +6 -3
  336. data/vendor/tomotopy/src/TopicModel/GDMRModel.hpp +2 -2
  337. data/vendor/tomotopy/src/TopicModel/HDP.h +1 -0
  338. data/vendor/tomotopy/src/TopicModel/HDPModel.hpp +57 -6
  339. data/vendor/tomotopy/src/TopicModel/HLDAModel.hpp +6 -3
  340. data/vendor/tomotopy/src/TopicModel/HPAModel.hpp +3 -2
  341. data/vendor/tomotopy/src/TopicModel/LDA.h +3 -3
  342. data/vendor/tomotopy/src/TopicModel/LDACVB0Model.hpp +5 -5
  343. data/vendor/tomotopy/src/TopicModel/LDAModel.hpp +50 -19
  344. data/vendor/tomotopy/src/TopicModel/LLDAModel.hpp +6 -2
  345. data/vendor/tomotopy/src/TopicModel/MGLDAModel.hpp +3 -2
  346. data/vendor/tomotopy/src/TopicModel/PAModel.hpp +1 -1
  347. data/vendor/tomotopy/src/TopicModel/PLDAModel.hpp +6 -2
  348. data/vendor/tomotopy/src/TopicModel/PT.h +3 -1
  349. data/vendor/tomotopy/src/TopicModel/PTModel.hpp +36 -3
  350. data/vendor/tomotopy/src/TopicModel/SLDAModel.hpp +6 -3
  351. data/vendor/tomotopy/src/TopicModel/TopicModel.hpp +55 -26
  352. data/vendor/tomotopy/src/Utils/AliasMethod.hpp +5 -4
  353. data/vendor/tomotopy/src/Utils/Dictionary.h +2 -2
  354. data/vendor/tomotopy/src/Utils/EigenAddonOps.hpp +36 -1
  355. data/vendor/tomotopy/src/Utils/MultiNormalDistribution.hpp +1 -1
  356. data/vendor/tomotopy/src/Utils/TruncMultiNormal.hpp +1 -1
  357. data/vendor/tomotopy/src/Utils/exception.h +6 -0
  358. data/vendor/tomotopy/src/Utils/math.h +2 -2
  359. data/vendor/tomotopy/src/Utils/sample.hpp +14 -12
  360. data/vendor/tomotopy/src/Utils/serializer.hpp +30 -5
  361. data/vendor/tomotopy/src/Utils/sse_gamma.h +0 -3
  362. metadata +64 -18
  363. data/vendor/eigen/Eigen/CMakeLists.txt +0 -19
  364. data/vendor/eigen/Eigen/src/Core/arch/CUDA/Half.h +0 -674
  365. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMath.h +0 -333
  366. data/vendor/eigen/Eigen/src/Core/arch/CUDA/PacketMathHalf.h +0 -1124
  367. data/vendor/eigen/Eigen/src/Core/arch/CUDA/TypeCasting.h +0 -212
  368. data/vendor/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h +0 -161
  369. data/vendor/eigen/Eigen/src/LU/arch/Inverse_SSE.h +0 -338
@@ -17,24 +17,28 @@ namespace internal {
17
17
 
18
18
  /** \internal \returns the hyperbolic tan of \a a (coeff-wise)
19
19
  Doesn't do anything fancy, just a 13/6-degree rational interpolant which
20
- is accurate up to a couple of ulp in the range [-9, 9], outside of which
21
- the tanh(x) = +/-1.
20
+ is accurate up to a couple of ulps in the (approximate) range [-8, 8],
21
+ outside of which tanh(x) = +/-1 in single precision. The input is clamped
22
+ to the range [-c, c]. The value c is chosen as the smallest value where
23
+ the approximation evaluates to exactly 1. In the reange [-0.0004, 0.0004]
24
+ the approxmation tanh(x) ~= x is used for better accuracy as x tends to zero.
22
25
 
23
26
  This implementation works on both scalars and packets.
24
27
  */
25
28
  template<typename T>
26
29
  T generic_fast_tanh_float(const T& a_x)
27
30
  {
28
- // Clamp the inputs to the range [-9, 9] since anything outside
29
- // this range is +/-1.0f in single-precision.
30
- const T plus_9 = pset1<T>(9.f);
31
- const T minus_9 = pset1<T>(-9.f);
32
- // NOTE GCC prior to 6.3 might improperly optimize this max/min
33
- // step such that if a_x is nan, x will be either 9 or -9,
34
- // and tanh will return 1 or -1 instead of nan.
35
- // This is supposed to be fixed in gcc6.3,
36
- // see: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=72867
37
- const T x = pmax(minus_9,pmin(plus_9,a_x));
31
+ // Clamp the inputs to the range [-c, c]
32
+ #ifdef EIGEN_VECTORIZE_FMA
33
+ const T plus_clamp = pset1<T>(7.99881172180175781f);
34
+ const T minus_clamp = pset1<T>(-7.99881172180175781f);
35
+ #else
36
+ const T plus_clamp = pset1<T>(7.90531110763549805f);
37
+ const T minus_clamp = pset1<T>(-7.90531110763549805f);
38
+ #endif
39
+ const T tiny = pset1<T>(0.0004f);
40
+ const T x = pmax(pmin(a_x, plus_clamp), minus_clamp);
41
+ const T tiny_mask = pcmp_lt(pabs(a_x), tiny);
38
42
  // The monomial coefficients of the numerator polynomial (odd).
39
43
  const T alpha_1 = pset1<T>(4.89352455891786e-03f);
40
44
  const T alpha_3 = pset1<T>(6.37261928875436e-04f);
@@ -62,24 +66,30 @@ T generic_fast_tanh_float(const T& a_x)
62
66
  p = pmadd(x2, p, alpha_1);
63
67
  p = pmul(x, p);
64
68
 
65
- // Evaluate the denominator polynomial p.
69
+ // Evaluate the denominator polynomial q.
66
70
  T q = pmadd(x2, beta_6, beta_4);
67
71
  q = pmadd(x2, q, beta_2);
68
72
  q = pmadd(x2, q, beta_0);
69
73
 
70
74
  // Divide the numerator by the denominator.
71
- return pdiv(p, q);
75
+ return pselect(tiny_mask, x, pdiv(p, q));
72
76
  }
73
77
 
74
78
  template<typename RealScalar>
75
- EIGEN_STRONG_INLINE
79
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
76
80
  RealScalar positive_real_hypot(const RealScalar& x, const RealScalar& y)
77
81
  {
78
- EIGEN_USING_STD_MATH(sqrt);
82
+ // IEEE IEC 6059 special cases.
83
+ if ((numext::isinf)(x) || (numext::isinf)(y))
84
+ return NumTraits<RealScalar>::infinity();
85
+ if ((numext::isnan)(x) || (numext::isnan)(y))
86
+ return NumTraits<RealScalar>::quiet_NaN();
87
+
88
+ EIGEN_USING_STD(sqrt);
79
89
  RealScalar p, qp;
80
90
  p = numext::maxi(x,y);
81
91
  if(p==RealScalar(0)) return RealScalar(0);
82
- qp = numext::mini(y,x) / p;
92
+ qp = numext::mini(y,x) / p;
83
93
  return p * sqrt(RealScalar(1) + qp*qp);
84
94
  }
85
95
 
@@ -87,13 +97,102 @@ template<typename Scalar>
87
97
  struct hypot_impl
88
98
  {
89
99
  typedef typename NumTraits<Scalar>::Real RealScalar;
90
- static inline RealScalar run(const Scalar& x, const Scalar& y)
100
+ static EIGEN_DEVICE_FUNC
101
+ inline RealScalar run(const Scalar& x, const Scalar& y)
91
102
  {
92
- EIGEN_USING_STD_MATH(abs);
103
+ EIGEN_USING_STD(abs);
93
104
  return positive_real_hypot<RealScalar>(abs(x), abs(y));
94
105
  }
95
106
  };
96
107
 
108
+ // Generic complex sqrt implementation that correctly handles corner cases
109
+ // according to https://en.cppreference.com/w/cpp/numeric/complex/sqrt
110
+ template<typename T>
111
+ EIGEN_DEVICE_FUNC std::complex<T> complex_sqrt(const std::complex<T>& z) {
112
+ // Computes the principal sqrt of the input.
113
+ //
114
+ // For a complex square root of the number x + i*y. We want to find real
115
+ // numbers u and v such that
116
+ // (u + i*v)^2 = x + i*y <=>
117
+ // u^2 - v^2 + i*2*u*v = x + i*v.
118
+ // By equating the real and imaginary parts we get:
119
+ // u^2 - v^2 = x
120
+ // 2*u*v = y.
121
+ //
122
+ // For x >= 0, this has the numerically stable solution
123
+ // u = sqrt(0.5 * (x + sqrt(x^2 + y^2)))
124
+ // v = y / (2 * u)
125
+ // and for x < 0,
126
+ // v = sign(y) * sqrt(0.5 * (-x + sqrt(x^2 + y^2)))
127
+ // u = y / (2 * v)
128
+ //
129
+ // Letting w = sqrt(0.5 * (|x| + |z|)),
130
+ // if x == 0: u = w, v = sign(y) * w
131
+ // if x > 0: u = w, v = y / (2 * w)
132
+ // if x < 0: u = |y| / (2 * w), v = sign(y) * w
133
+
134
+ const T x = numext::real(z);
135
+ const T y = numext::imag(z);
136
+ const T zero = T(0);
137
+ const T w = numext::sqrt(T(0.5) * (numext::abs(x) + numext::hypot(x, y)));
138
+
139
+ return
140
+ (numext::isinf)(y) ? std::complex<T>(NumTraits<T>::infinity(), y)
141
+ : x == zero ? std::complex<T>(w, y < zero ? -w : w)
142
+ : x > zero ? std::complex<T>(w, y / (2 * w))
143
+ : std::complex<T>(numext::abs(y) / (2 * w), y < zero ? -w : w );
144
+ }
145
+
146
+ // Generic complex rsqrt implementation.
147
+ template<typename T>
148
+ EIGEN_DEVICE_FUNC std::complex<T> complex_rsqrt(const std::complex<T>& z) {
149
+ // Computes the principal reciprocal sqrt of the input.
150
+ //
151
+ // For a complex reciprocal square root of the number z = x + i*y. We want to
152
+ // find real numbers u and v such that
153
+ // (u + i*v)^2 = 1 / (x + i*y) <=>
154
+ // u^2 - v^2 + i*2*u*v = x/|z|^2 - i*v/|z|^2.
155
+ // By equating the real and imaginary parts we get:
156
+ // u^2 - v^2 = x/|z|^2
157
+ // 2*u*v = y/|z|^2.
158
+ //
159
+ // For x >= 0, this has the numerically stable solution
160
+ // u = sqrt(0.5 * (x + |z|)) / |z|
161
+ // v = -y / (2 * u * |z|)
162
+ // and for x < 0,
163
+ // v = -sign(y) * sqrt(0.5 * (-x + |z|)) / |z|
164
+ // u = -y / (2 * v * |z|)
165
+ //
166
+ // Letting w = sqrt(0.5 * (|x| + |z|)),
167
+ // if x == 0: u = w / |z|, v = -sign(y) * w / |z|
168
+ // if x > 0: u = w / |z|, v = -y / (2 * w * |z|)
169
+ // if x < 0: u = |y| / (2 * w * |z|), v = -sign(y) * w / |z|
170
+
171
+ const T x = numext::real(z);
172
+ const T y = numext::imag(z);
173
+ const T zero = T(0);
174
+
175
+ const T abs_z = numext::hypot(x, y);
176
+ const T w = numext::sqrt(T(0.5) * (numext::abs(x) + abs_z));
177
+ const T woz = w / abs_z;
178
+ // Corner cases consistent with 1/sqrt(z) on gcc/clang.
179
+ return
180
+ abs_z == zero ? std::complex<T>(NumTraits<T>::infinity(), NumTraits<T>::quiet_NaN())
181
+ : ((numext::isinf)(x) || (numext::isinf)(y)) ? std::complex<T>(zero, zero)
182
+ : x == zero ? std::complex<T>(woz, y < zero ? woz : -woz)
183
+ : x > zero ? std::complex<T>(woz, -y / (2 * w * abs_z))
184
+ : std::complex<T>(numext::abs(y) / (2 * w * abs_z), y < zero ? woz : -woz );
185
+ }
186
+
187
+ template<typename T>
188
+ EIGEN_DEVICE_FUNC std::complex<T> complex_log(const std::complex<T>& z) {
189
+ // Computes complex log.
190
+ T a = numext::abs(z);
191
+ EIGEN_USING_STD(atan2);
192
+ T b = atan2(z.imag(), z.real());
193
+ return std::complex<T>(numext::log(a), b);
194
+ }
195
+
97
196
  } // end namespace internal
98
197
 
99
198
  } // end namespace Eigen
@@ -29,7 +29,7 @@ private:
29
29
  required_alignment = unpacket_traits<PacketScalar>::alignment,
30
30
  packet_access_bit = (packet_traits<_Scalar>::Vectorizable && (EIGEN_UNALIGNED_VECTORIZE || (actual_alignment>=required_alignment))) ? PacketAccessBit : 0
31
31
  };
32
-
32
+
33
33
  public:
34
34
  typedef _Scalar Scalar;
35
35
  typedef Dense StorageKind;
@@ -44,7 +44,7 @@ public:
44
44
  Options = _Options,
45
45
  InnerStrideAtCompileTime = 1,
46
46
  OuterStrideAtCompileTime = (Options&RowMajor) ? ColsAtCompileTime : RowsAtCompileTime,
47
-
47
+
48
48
  // FIXME, the following flag in only used to define NeedsToAlign in PlainObjectBase
49
49
  EvaluatorFlags = LinearAccessBit | DirectAccessBit | packet_access_bit | row_major_bit,
50
50
  Alignment = actual_alignment
@@ -255,53 +255,93 @@ class Matrix
255
255
  *
256
256
  * \sa resize(Index,Index)
257
257
  */
258
- EIGEN_DEVICE_FUNC
259
- EIGEN_STRONG_INLINE Matrix() : Base()
258
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
259
+ Matrix() : Base()
260
260
  {
261
261
  Base::_check_template_params();
262
262
  EIGEN_INITIALIZE_COEFFS_IF_THAT_OPTION_IS_ENABLED
263
263
  }
264
264
 
265
265
  // FIXME is it still needed
266
- EIGEN_DEVICE_FUNC
266
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
267
267
  explicit Matrix(internal::constructor_without_unaligned_array_assert)
268
268
  : Base(internal::constructor_without_unaligned_array_assert())
269
269
  { Base::_check_template_params(); EIGEN_INITIALIZE_COEFFS_IF_THAT_OPTION_IS_ENABLED }
270
270
 
271
271
  #if EIGEN_HAS_RVALUE_REFERENCES
272
- EIGEN_DEVICE_FUNC
272
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
273
273
  Matrix(Matrix&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_constructible<Scalar>::value)
274
274
  : Base(std::move(other))
275
275
  {
276
276
  Base::_check_template_params();
277
277
  }
278
- EIGEN_DEVICE_FUNC
278
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
279
279
  Matrix& operator=(Matrix&& other) EIGEN_NOEXCEPT_IF(std::is_nothrow_move_assignable<Scalar>::value)
280
280
  {
281
- other.swap(*this);
281
+ Base::operator=(std::move(other));
282
282
  return *this;
283
283
  }
284
284
  #endif
285
285
 
286
- #ifndef EIGEN_PARSED_BY_DOXYGEN
286
+ #if EIGEN_HAS_CXX11
287
+ /** \copydoc PlainObjectBase(const Scalar&, const Scalar&, const Scalar&, const Scalar&, const ArgTypes&... args)
288
+ *
289
+ * Example: \include Matrix_variadic_ctor_cxx11.cpp
290
+ * Output: \verbinclude Matrix_variadic_ctor_cxx11.out
291
+ *
292
+ * \sa Matrix(const std::initializer_list<std::initializer_list<Scalar>>&)
293
+ */
294
+ template <typename... ArgTypes>
295
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
296
+ Matrix(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
297
+ : Base(a0, a1, a2, a3, args...) {}
298
+
299
+ /** \brief Constructs a Matrix and initializes it from the coefficients given as initializer-lists grouped by row. \cpp11
300
+ *
301
+ * In the general case, the constructor takes a list of rows, each row being represented as a list of coefficients:
302
+ *
303
+ * Example: \include Matrix_initializer_list_23_cxx11.cpp
304
+ * Output: \verbinclude Matrix_initializer_list_23_cxx11.out
305
+ *
306
+ * Each of the inner initializer lists must contain the exact same number of elements, otherwise an assertion is triggered.
307
+ *
308
+ * In the case of a compile-time column vector, implicit transposition from a single row is allowed.
309
+ * Therefore <code>VectorXd{{1,2,3,4,5}}</code> is legal and the more verbose syntax
310
+ * <code>RowVectorXd{{1},{2},{3},{4},{5}}</code> can be avoided:
311
+ *
312
+ * Example: \include Matrix_initializer_list_vector_cxx11.cpp
313
+ * Output: \verbinclude Matrix_initializer_list_vector_cxx11.out
314
+ *
315
+ * In the case of fixed-sized matrices, the initializer list sizes must exactly match the matrix sizes,
316
+ * and implicit transposition is allowed for compile-time vectors only.
317
+ *
318
+ * \sa Matrix(const Scalar& a0, const Scalar& a1, const Scalar& a2, const Scalar& a3, const ArgTypes&... args)
319
+ */
320
+ EIGEN_DEVICE_FUNC
321
+ explicit EIGEN_STRONG_INLINE Matrix(const std::initializer_list<std::initializer_list<Scalar>>& list) : Base(list) {}
322
+ #endif // end EIGEN_HAS_CXX11
323
+
324
+ #ifndef EIGEN_PARSED_BY_DOXYGEN
287
325
 
288
326
  // This constructor is for both 1x1 matrices and dynamic vectors
289
327
  template<typename T>
290
- EIGEN_DEVICE_FUNC
291
- EIGEN_STRONG_INLINE explicit Matrix(const T& x)
328
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
329
+ explicit Matrix(const T& x)
292
330
  {
293
331
  Base::_check_template_params();
294
332
  Base::template _init1<T>(x);
295
333
  }
296
334
 
297
335
  template<typename T0, typename T1>
298
- EIGEN_DEVICE_FUNC
299
- EIGEN_STRONG_INLINE Matrix(const T0& x, const T1& y)
336
+ EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
337
+ Matrix(const T0& x, const T1& y)
300
338
  {
301
339
  Base::_check_template_params();
302
340
  Base::template _init2<T0,T1>(x, y);
303
341
  }
304
- #else
342
+
343
+
344
+ #else
305
345
  /** \brief Constructs a fixed-sized matrix initialized with coefficients starting at \a data */
306
346
  EIGEN_DEVICE_FUNC
307
347
  explicit Matrix(const Scalar *data);
@@ -311,7 +351,7 @@ class Matrix
311
351
  * This is useful for dynamic-size vectors. For fixed-size vectors,
312
352
  * it is redundant to pass these parameters, so one should use the default constructor
313
353
  * Matrix() instead.
314
- *
354
+ *
315
355
  * \warning This constructor is disabled for fixed-size \c 1x1 matrices. For instance,
316
356
  * calling Matrix<double,1,1>(1) will call the initialization constructor: Matrix(const Scalar&).
317
357
  * For fixed-size \c 1x1 matrices it is therefore recommended to use the default
@@ -319,14 +359,15 @@ class Matrix
319
359
  * \c EIGEN_INITIALIZE_MATRICES_BY_{ZERO,\c NAN} macros (see \ref TopicPreprocessorDirectives).
320
360
  */
321
361
  EIGEN_STRONG_INLINE explicit Matrix(Index dim);
322
- /** \brief Constructs an initialized 1x1 matrix with the given coefficient */
362
+ /** \brief Constructs an initialized 1x1 matrix with the given coefficient
363
+ * \sa Matrix(const Scalar&, const Scalar&, const Scalar&, const Scalar&, const ArgTypes&...) */
323
364
  Matrix(const Scalar& x);
324
365
  /** \brief Constructs an uninitialized matrix with \a rows rows and \a cols columns.
325
366
  *
326
367
  * This is useful for dynamic-size matrices. For fixed-size matrices,
327
368
  * it is redundant to pass these parameters, so one should use the default constructor
328
369
  * Matrix() instead.
329
- *
370
+ *
330
371
  * \warning This constructor is disabled for fixed-size \c 1x2 and \c 2x1 vectors. For instance,
331
372
  * calling Matrix2f(2,1) will call the initialization constructor: Matrix(const Scalar& x, const Scalar& y).
332
373
  * For fixed-size \c 1x2 or \c 2x1 vectors it is therefore recommended to use the default
@@ -335,12 +376,15 @@ class Matrix
335
376
  */
336
377
  EIGEN_DEVICE_FUNC
337
378
  Matrix(Index rows, Index cols);
338
-
339
- /** \brief Constructs an initialized 2D vector with given coefficients */
379
+
380
+ /** \brief Constructs an initialized 2D vector with given coefficients
381
+ * \sa Matrix(const Scalar&, const Scalar&, const Scalar&, const Scalar&, const ArgTypes&...) */
340
382
  Matrix(const Scalar& x, const Scalar& y);
341
- #endif
383
+ #endif // end EIGEN_PARSED_BY_DOXYGEN
342
384
 
343
- /** \brief Constructs an initialized 3D vector with given coefficients */
385
+ /** \brief Constructs an initialized 3D vector with given coefficients
386
+ * \sa Matrix(const Scalar&, const Scalar&, const Scalar&, const Scalar&, const ArgTypes&...)
387
+ */
344
388
  EIGEN_DEVICE_FUNC
345
389
  EIGEN_STRONG_INLINE Matrix(const Scalar& x, const Scalar& y, const Scalar& z)
346
390
  {
@@ -350,7 +394,9 @@ class Matrix
350
394
  m_storage.data()[1] = y;
351
395
  m_storage.data()[2] = z;
352
396
  }
353
- /** \brief Constructs an initialized 4D vector with given coefficients */
397
+ /** \brief Constructs an initialized 4D vector with given coefficients
398
+ * \sa Matrix(const Scalar&, const Scalar&, const Scalar&, const Scalar&, const ArgTypes&...)
399
+ */
354
400
  EIGEN_DEVICE_FUNC
355
401
  EIGEN_STRONG_INLINE Matrix(const Scalar& x, const Scalar& y, const Scalar& z, const Scalar& w)
356
402
  {
@@ -377,8 +423,10 @@ class Matrix
377
423
  : Base(other.derived())
378
424
  { }
379
425
 
380
- EIGEN_DEVICE_FUNC inline Index innerStride() const { return 1; }
381
- EIGEN_DEVICE_FUNC inline Index outerStride() const { return this->innerSize(); }
426
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
427
+ inline Index innerStride() const EIGEN_NOEXCEPT { return 1; }
428
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR
429
+ inline Index outerStride() const EIGEN_NOEXCEPT { return this->innerSize(); }
382
430
 
383
431
  /////////// Geometry module ///////////
384
432
 
@@ -405,7 +453,7 @@ class Matrix
405
453
  *
406
454
  * \ingroup Core_Module
407
455
  *
408
- * Eigen defines several typedef shortcuts for most common matrix and vector types.
456
+ * %Eigen defines several typedef shortcuts for most common matrix and vector types.
409
457
  *
410
458
  * The general patterns are the following:
411
459
  *
@@ -418,6 +466,15 @@ class Matrix
418
466
  * There are also \c VectorSizeType and \c RowVectorSizeType which are self-explanatory. For example, \c Vector4cf is
419
467
  * a fixed-size vector of 4 complex floats.
420
468
  *
469
+ * With \cpp11, template alias are also defined for common sizes.
470
+ * They follow the same pattern as above except that the scalar type suffix is replaced by a
471
+ * template parameter, i.e.:
472
+ * - `MatrixSize<Type>` where `Size` can be \c 2,\c 3,\c 4 for fixed size square matrices or \c X for dynamic size.
473
+ * - `MatrixXSize<Type>` and `MatrixSizeX<Type>` where `Size` can be \c 2,\c 3,\c 4 for hybrid dynamic/fixed matrices.
474
+ * - `VectorSize<Type>` and `RowVectorSize<Type>` for column and row vectors.
475
+ *
476
+ * With \cpp11, you can also use fully generic column and row vector types: `Vector<Type,Size>` and `RowVector<Type,Size>`.
477
+ *
421
478
  * \sa class Matrix
422
479
  */
423
480
 
@@ -454,6 +511,55 @@ EIGEN_MAKE_TYPEDEFS_ALL_SIZES(std::complex<double>, cd)
454
511
  #undef EIGEN_MAKE_TYPEDEFS
455
512
  #undef EIGEN_MAKE_FIXED_TYPEDEFS
456
513
 
514
+ #if EIGEN_HAS_CXX11
515
+
516
+ #define EIGEN_MAKE_TYPEDEFS(Size, SizeSuffix) \
517
+ /** \ingroup matrixtypedefs */ \
518
+ /** \brief \cpp11 */ \
519
+ template <typename Type> \
520
+ using Matrix##SizeSuffix = Matrix<Type, Size, Size>; \
521
+ /** \ingroup matrixtypedefs */ \
522
+ /** \brief \cpp11 */ \
523
+ template <typename Type> \
524
+ using Vector##SizeSuffix = Matrix<Type, Size, 1>; \
525
+ /** \ingroup matrixtypedefs */ \
526
+ /** \brief \cpp11 */ \
527
+ template <typename Type> \
528
+ using RowVector##SizeSuffix = Matrix<Type, 1, Size>;
529
+
530
+ #define EIGEN_MAKE_FIXED_TYPEDEFS(Size) \
531
+ /** \ingroup matrixtypedefs */ \
532
+ /** \brief \cpp11 */ \
533
+ template <typename Type> \
534
+ using Matrix##Size##X = Matrix<Type, Size, Dynamic>; \
535
+ /** \ingroup matrixtypedefs */ \
536
+ /** \brief \cpp11 */ \
537
+ template <typename Type> \
538
+ using Matrix##X##Size = Matrix<Type, Dynamic, Size>;
539
+
540
+ EIGEN_MAKE_TYPEDEFS(2, 2)
541
+ EIGEN_MAKE_TYPEDEFS(3, 3)
542
+ EIGEN_MAKE_TYPEDEFS(4, 4)
543
+ EIGEN_MAKE_TYPEDEFS(Dynamic, X)
544
+ EIGEN_MAKE_FIXED_TYPEDEFS(2)
545
+ EIGEN_MAKE_FIXED_TYPEDEFS(3)
546
+ EIGEN_MAKE_FIXED_TYPEDEFS(4)
547
+
548
+ /** \ingroup matrixtypedefs
549
+ * \brief \cpp11 */
550
+ template <typename Type, int Size>
551
+ using Vector = Matrix<Type, Size, 1>;
552
+
553
+ /** \ingroup matrixtypedefs
554
+ * \brief \cpp11 */
555
+ template <typename Type, int Size>
556
+ using RowVector = Matrix<Type, 1, Size>;
557
+
558
+ #undef EIGEN_MAKE_TYPEDEFS
559
+ #undef EIGEN_MAKE_FIXED_TYPEDEFS
560
+
561
+ #endif // EIGEN_HAS_CXX11
562
+
457
563
  } // end namespace Eigen
458
564
 
459
565
  #endif // EIGEN_MATRIX_H
@@ -76,6 +76,7 @@ template<typename Derived> class MatrixBase
76
76
  using Base::coeffRef;
77
77
  using Base::lazyAssign;
78
78
  using Base::eval;
79
+ using Base::operator-;
79
80
  using Base::operator+=;
80
81
  using Base::operator-=;
81
82
  using Base::operator*=;
@@ -122,7 +123,6 @@ template<typename Derived> class MatrixBase
122
123
 
123
124
  #define EIGEN_CURRENT_STORAGE_BASE_CLASS Eigen::MatrixBase
124
125
  #define EIGEN_DOC_UNARY_ADDONS(X,Y)
125
- # include "../plugins/CommonCwiseUnaryOps.h"
126
126
  # include "../plugins/CommonCwiseBinaryOps.h"
127
127
  # include "../plugins/MatrixCwiseUnaryOps.h"
128
128
  # include "../plugins/MatrixCwiseBinaryOps.h"
@@ -268,6 +268,8 @@ template<typename Derived> class MatrixBase
268
268
  Derived& setIdentity();
269
269
  EIGEN_DEVICE_FUNC
270
270
  Derived& setIdentity(Index rows, Index cols);
271
+ EIGEN_DEVICE_FUNC Derived& setUnit(Index i);
272
+ EIGEN_DEVICE_FUNC Derived& setUnit(Index newSize, Index i);
271
273
 
272
274
  bool isIdentity(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
273
275
  bool isDiagonal(const RealScalar& prec = NumTraits<Scalar>::dummy_precision()) const;
@@ -296,7 +298,7 @@ template<typename Derived> class MatrixBase
296
298
  EIGEN_DEVICE_FUNC inline bool operator!=(const MatrixBase<OtherDerived>& other) const
297
299
  { return cwiseNotEqual(other).any(); }
298
300
 
299
- NoAlias<Derived,Eigen::MatrixBase > noalias();
301
+ NoAlias<Derived,Eigen::MatrixBase > EIGEN_DEVICE_FUNC noalias();
300
302
 
301
303
  // TODO forceAlignedAccess is temporarily disabled
302
304
  // Need to find a nicer workaround.
@@ -326,6 +328,7 @@ template<typename Derived> class MatrixBase
326
328
 
327
329
  inline const PartialPivLU<PlainObject> lu() const;
328
330
 
331
+ EIGEN_DEVICE_FUNC
329
332
  inline const Inverse<Derived> inverse() const;
330
333
 
331
334
  template<typename ResultType>
@@ -335,12 +338,15 @@ template<typename Derived> class MatrixBase
335
338
  bool& invertible,
336
339
  const RealScalar& absDeterminantThreshold = NumTraits<Scalar>::dummy_precision()
337
340
  ) const;
341
+
338
342
  template<typename ResultType>
339
343
  inline void computeInverseWithCheck(
340
344
  ResultType& inverse,
341
345
  bool& invertible,
342
346
  const RealScalar& absDeterminantThreshold = NumTraits<Scalar>::dummy_precision()
343
347
  ) const;
348
+
349
+ EIGEN_DEVICE_FUNC
344
350
  Scalar determinant() const;
345
351
 
346
352
  /////////// Cholesky module ///////////
@@ -412,15 +418,19 @@ template<typename Derived> class MatrixBase
412
418
 
413
419
  ////////// Householder module ///////////
414
420
 
421
+ EIGEN_DEVICE_FUNC
415
422
  void makeHouseholderInPlace(Scalar& tau, RealScalar& beta);
416
423
  template<typename EssentialPart>
424
+ EIGEN_DEVICE_FUNC
417
425
  void makeHouseholder(EssentialPart& essential,
418
426
  Scalar& tau, RealScalar& beta) const;
419
427
  template<typename EssentialPart>
428
+ EIGEN_DEVICE_FUNC
420
429
  void applyHouseholderOnTheLeft(const EssentialPart& essential,
421
430
  const Scalar& tau,
422
431
  Scalar* workspace);
423
432
  template<typename EssentialPart>
433
+ EIGEN_DEVICE_FUNC
424
434
  void applyHouseholderOnTheRight(const EssentialPart& essential,
425
435
  const Scalar& tau,
426
436
  Scalar* workspace);
@@ -428,8 +438,10 @@ template<typename Derived> class MatrixBase
428
438
  ///////// Jacobi module /////////
429
439
 
430
440
  template<typename OtherScalar>
441
+ EIGEN_DEVICE_FUNC
431
442
  void applyOnTheLeft(Index p, Index q, const JacobiRotation<OtherScalar>& j);
432
443
  template<typename OtherScalar>
444
+ EIGEN_DEVICE_FUNC
433
445
  void applyOnTheRight(Index p, Index q, const JacobiRotation<OtherScalar>& j);
434
446
 
435
447
  ///////// SparseCore module /////////
@@ -456,6 +468,11 @@ template<typename Derived> class MatrixBase
456
468
  const MatrixFunctionReturnValue<Derived> matrixFunction(StemFunction f) const;
457
469
  EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, cosh, hyperbolic cosine)
458
470
  EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, sinh, hyperbolic sine)
471
+ #if EIGEN_HAS_CXX11_MATH
472
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, atanh, inverse hyperbolic cosine)
473
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, acosh, inverse hyperbolic cosine)
474
+ EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, asinh, inverse hyperbolic sine)
475
+ #endif
459
476
  EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, cos, cosine)
460
477
  EIGEN_MATRIX_FUNCTION(MatrixFunctionReturnValue, sin, sine)
461
478
  EIGEN_MATRIX_FUNCTION(MatrixSquareRootReturnValue, sqrt, square root)
@@ -464,7 +481,8 @@ template<typename Derived> class MatrixBase
464
481
  EIGEN_MATRIX_FUNCTION_1(MatrixComplexPowerReturnValue, pow, power to \c p, const std::complex<RealScalar>& p)
465
482
 
466
483
  protected:
467
- EIGEN_DEVICE_FUNC MatrixBase() : Base() {}
484
+ EIGEN_DEFAULT_COPY_CONSTRUCTOR(MatrixBase)
485
+ EIGEN_DEFAULT_EMPTY_CONSTRUCTOR_AND_DESTRUCTOR(MatrixBase)
468
486
 
469
487
  private:
470
488
  EIGEN_DEVICE_FUNC explicit MatrixBase(int);
@@ -16,7 +16,11 @@ namespace Eigen {
16
16
  namespace internal {
17
17
  template<typename ExpressionType>
18
18
  struct traits<NestByValue<ExpressionType> > : public traits<ExpressionType>
19
- {};
19
+ {
20
+ enum {
21
+ Flags = traits<ExpressionType>::Flags & ~NestByRefBit
22
+ };
23
+ };
20
24
  }
21
25
 
22
26
  /** \class NestByValue
@@ -41,57 +45,13 @@ template<typename ExpressionType> class NestByValue
41
45
 
42
46
  EIGEN_DEVICE_FUNC explicit inline NestByValue(const ExpressionType& matrix) : m_expression(matrix) {}
43
47
 
44
- EIGEN_DEVICE_FUNC inline Index rows() const { return m_expression.rows(); }
45
- EIGEN_DEVICE_FUNC inline Index cols() const { return m_expression.cols(); }
46
- EIGEN_DEVICE_FUNC inline Index outerStride() const { return m_expression.outerStride(); }
47
- EIGEN_DEVICE_FUNC inline Index innerStride() const { return m_expression.innerStride(); }
48
-
49
- EIGEN_DEVICE_FUNC inline const CoeffReturnType coeff(Index row, Index col) const
50
- {
51
- return m_expression.coeff(row, col);
52
- }
53
-
54
- EIGEN_DEVICE_FUNC inline Scalar& coeffRef(Index row, Index col)
55
- {
56
- return m_expression.const_cast_derived().coeffRef(row, col);
57
- }
58
-
59
- EIGEN_DEVICE_FUNC inline const CoeffReturnType coeff(Index index) const
60
- {
61
- return m_expression.coeff(index);
62
- }
63
-
64
- EIGEN_DEVICE_FUNC inline Scalar& coeffRef(Index index)
65
- {
66
- return m_expression.const_cast_derived().coeffRef(index);
67
- }
68
-
69
- template<int LoadMode>
70
- inline const PacketScalar packet(Index row, Index col) const
71
- {
72
- return m_expression.template packet<LoadMode>(row, col);
73
- }
74
-
75
- template<int LoadMode>
76
- inline void writePacket(Index row, Index col, const PacketScalar& x)
77
- {
78
- m_expression.const_cast_derived().template writePacket<LoadMode>(row, col, x);
79
- }
80
-
81
- template<int LoadMode>
82
- inline const PacketScalar packet(Index index) const
83
- {
84
- return m_expression.template packet<LoadMode>(index);
85
- }
86
-
87
- template<int LoadMode>
88
- inline void writePacket(Index index, const PacketScalar& x)
89
- {
90
- m_expression.const_cast_derived().template writePacket<LoadMode>(index, x);
91
- }
48
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR inline Index rows() const EIGEN_NOEXCEPT { return m_expression.rows(); }
49
+ EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR inline Index cols() const EIGEN_NOEXCEPT { return m_expression.cols(); }
92
50
 
93
51
  EIGEN_DEVICE_FUNC operator const ExpressionType&() const { return m_expression; }
94
52
 
53
+ EIGEN_DEVICE_FUNC const ExpressionType& nestedExpression() const { return m_expression; }
54
+
95
55
  protected:
96
56
  const ExpressionType m_expression;
97
57
  };
@@ -99,12 +59,27 @@ template<typename ExpressionType> class NestByValue
99
59
  /** \returns an expression of the temporary version of *this.
100
60
  */
101
61
  template<typename Derived>
102
- inline const NestByValue<Derived>
62
+ EIGEN_DEVICE_FUNC inline const NestByValue<Derived>
103
63
  DenseBase<Derived>::nestByValue() const
104
64
  {
105
65
  return NestByValue<Derived>(derived());
106
66
  }
107
67
 
68
+ namespace internal {
69
+
70
+ // Evaluator of Solve -> eval into a temporary
71
+ template<typename ArgType>
72
+ struct evaluator<NestByValue<ArgType> >
73
+ : public evaluator<ArgType>
74
+ {
75
+ typedef evaluator<ArgType> Base;
76
+
77
+ EIGEN_DEVICE_FUNC explicit evaluator(const NestByValue<ArgType>& xpr)
78
+ : Base(xpr.nestedExpression())
79
+ {}
80
+ };
81
+ }
82
+
108
83
  } // end namespace Eigen
109
84
 
110
85
  #endif // EIGEN_NESTBYVALUE_H