niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/afni_system_check_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 AFNI_SYSTEM_CHECK_PY_METADATA = Metadata(
-    id="7248e64b61704a674c053c7617aa062fc59a999c.boutiques",
+    id="4adec5e6e037e559c429c7306f6d084906ba4604.boutiques",
     name="afni_system_check.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,20 @@ AFNI_SYSTEM_CHECK_PY_METADATA = Metadata(
 
 
 AfniSystemCheckPyParameters = typing.TypedDict('AfniSystemCheckPyParameters', {
-    "__STYXTYPE__": typing.Literal["afni_system_check.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/afni_system_check.py"]],
+    "check_all": bool,
+    "find_prog": typing.NotRequired[str | None],
+    "exact": typing.NotRequired[str | None],
+    "disp_num_cpu": bool,
+    "disp_ver_matplotlib": bool,
+    "dot_file_list": bool,
+    "dot_file_show": bool,
+    "dot_file_pack": typing.NotRequired[str | None],
+    "casematch": typing.NotRequired[str | None],
+    "data_root": typing.NotRequired[str | None],
+})
+AfniSystemCheckPyParametersTagged = typing.TypedDict('AfniSystemCheckPyParametersTagged', {
+    "@type": typing.Literal["afni/afni_system_check.py"],
     "check_all": bool,
     "find_prog": typing.NotRequired[str | None],
     "exact": typing.NotRequired[str | None],
@@ -26,42 +39,11 @@ AfniSystemCheckPyParameters = typing.TypedDict('AfniSystemCheckPyParameters', {
     "casematch": typing.NotRequired[str | None],
     "data_root": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "afni_system_check.py": afni_system_check_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class AfniSystemCheckPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `afni_system_check_py(...)`.
+    Output object returned when calling `AfniSystemCheckPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -78,7 +60,7 @@ def afni_system_check_py_params(
     dot_file_pack: str | None = None,
     casematch: str | None = None,
     data_root: str | None = None,
-) -> AfniSystemCheckPyParameters:
+) -> AfniSystemCheckPyParametersTagged:
     """
     Build parameters.
     
@@ -97,7 +79,7 @@ def afni_system_check_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "afni_system_check.py",
+        "@type": "afni/afni_system_check.py",
         "check_all": check_all,
         "disp_num_cpu": disp_num_cpu,
         "disp_ver_matplotlib": disp_ver_matplotlib,
@@ -132,40 +114,40 @@ def afni_system_check_py_cargs(
     """
     cargs = []
     cargs.append("afni_system_check.py")
-    if params.get("check_all"):
+    if params.get("check_all", False):
         cargs.append("-check_all")
-    if params.get("find_prog") is not None:
+    if params.get("find_prog", None) is not None:
         cargs.extend([
             "-find_prog",
-            params.get("find_prog")
+            params.get("find_prog", None)
         ])
-    if params.get("exact") is not None:
+    if params.get("exact", None) is not None:
         cargs.extend([
             "-exact",
-            params.get("exact")
+            params.get("exact", None)
         ])
-    if params.get("disp_num_cpu"):
+    if params.get("disp_num_cpu", False):
         cargs.append("-disp_num_cpu")
-    if params.get("disp_ver_matplotlib"):
+    if params.get("disp_ver_matplotlib", False):
         cargs.append("-disp_ver_matplotlib")
-    if params.get("dot_file_list"):
+    if params.get("dot_file_list", False):
         cargs.append("-dot_file_list")
-    if params.get("dot_file_show"):
+    if params.get("dot_file_show", False):
         cargs.append("-dot_file_show")
-    if params.get("dot_file_pack") is not None:
+    if params.get("dot_file_pack", None) is not None:
         cargs.extend([
             "-dot_file_pack",
-            params.get("dot_file_pack")
+            params.get("dot_file_pack", None)
         ])
-    if params.get("casematch") is not None:
+    if params.get("casematch", None) is not None:
         cargs.extend([
             "-casematch",
-            params.get("casematch")
+            params.get("casematch", None)
         ])
-    if params.get("data_root") is not None:
+    if params.get("data_root", None) is not None:
         cargs.extend([
             "-data_root",
-            params.get("data_root")
+            params.get("data_root", None)
         ])
     return cargs
 
@@ -191,9 +173,11 @@ def afni_system_check_py_outputs(
 
 def afni_system_check_py_execute(
     params: AfniSystemCheckPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AfniSystemCheckPyOutputs:
     """
+    afni_system_check.py
+    
     Perform various system checks for figuring out AFNI installation issues.
     
     Author: AFNI Developers
@@ -202,10 +186,12 @@ def afni_system_check_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AfniSystemCheckPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(AFNI_SYSTEM_CHECK_PY_METADATA)
     params = execution.params(params)
     cargs = afni_system_check_py_cargs(params, execution)
     ret = afni_system_check_py_outputs(params, execution)
@@ -227,6 +213,8 @@ def afni_system_check_py(
     runner: Runner | None = None,
 ) -> AfniSystemCheckPyOutputs:
     """
+    afni_system_check.py
+    
     Perform various system checks for figuring out AFNI installation issues.
     
     Author: AFNI Developers
@@ -248,8 +236,6 @@ def afni_system_check_py(
     Returns:
         NamedTuple of outputs (described in `AfniSystemCheckPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(AFNI_SYSTEM_CHECK_PY_METADATA)
     params = afni_system_check_py_params(
         check_all=check_all,
         find_prog=find_prog,
@@ -262,13 +248,13 @@ def afni_system_check_py(
         casematch=casematch,
         data_root=data_root,
     )
-    return afni_system_check_py_execute(params, execution)
+    return afni_system_check_py_execute(params, runner)
 
 
 __all__ = [
     "AFNI_SYSTEM_CHECK_PY_METADATA",
     "AfniSystemCheckPyOutputs",
-    "AfniSystemCheckPyParameters",
     "afni_system_check_py",
+    "afni_system_check_py_execute",
     "afni_system_check_py_params",
 ]

niwrap_afni/afni/aiv.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 AIV_METADATA = Metadata(
-    id="15fdfbd8f9f110092da69182fb86e63bdd365727.boutiques",
+    id="05bb93514322b857558474baa36c5e97e4bbf89e.boutiques",
     name="aiv",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ AIV_METADATA = Metadata(
 
 
 AivParameters = typing.TypedDict('AivParameters', {
-    "__STYXTYPE__": typing.Literal["aiv"],
+    "@type": typing.NotRequired[typing.Literal["afni/aiv"]],
+    "verbose": bool,
+    "quiet": bool,
+    "title": typing.NotRequired[str | None],
+    "port": typing.NotRequired[float | None],
+    "pad": typing.NotRequired[str | None],
+    "input_images": list[InputPathType],
+})
+AivParametersTagged = typing.TypedDict('AivParametersTagged', {
+    "@type": typing.Literal["afni/aiv"],
     "verbose": bool,
     "quiet": bool,
     "title": typing.NotRequired[str | None],
@@ -22,42 +31,11 @@ AivParameters = typing.TypedDict('AivParameters', {
     "pad": typing.NotRequired[str | None],
     "input_images": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "aiv": aiv_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class AivOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `aiv(...)`.
+    Output object returned when calling `AivParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -70,7 +48,7 @@ def aiv_params(
     title: str | None = None,
     port: float | None = None,
     pad: str | None = None,
-) -> AivParameters:
+) -> AivParametersTagged:
     """
     Build parameters.
     
@@ -85,7 +63,7 @@ def aiv_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "aiv",
+        "@type": "afni/aiv",
         "verbose": verbose,
         "quiet": quiet,
         "input_images": input_images,
@@ -114,26 +92,26 @@ def aiv_cargs(
     """
     cargs = []
     cargs.append("aiv")
-    if params.get("verbose"):
+    if params.get("verbose", False):
         cargs.append("-v")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-q")
-    if params.get("title") is not None:
+    if params.get("title", None) is not None:
         cargs.extend([
             "-title",
-            params.get("title")
+            params.get("title", None)
         ])
-    if params.get("port") is not None:
+    if params.get("port", None) is not None:
         cargs.extend([
             "-p",
-            str(params.get("port"))
+            str(params.get("port", None))
         ])
-    if params.get("pad") is not None:
+    if params.get("pad", None) is not None:
         cargs.extend([
             "-pad",
-            params.get("pad")
+            params.get("pad", None)
         ])
-    cargs.extend([execution.input_file(f) for f in params.get("input_images")])
+    cargs.extend([execution.input_file(f) for f in params.get("input_images", None)])
     return cargs
 
 
@@ -158,9 +136,11 @@ def aiv_outputs(
 
 def aiv_execute(
     params: AivParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AivOutputs:
     """
+    aiv
+    
     AFNI Image Viewer program. Shows the 2D images on the command line in an
     AFNI-like image viewer.
     
@@ -170,10 +150,12 @@ def aiv_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AivOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(AIV_METADATA)
     params = execution.params(params)
     cargs = aiv_cargs(params, execution)
     ret = aiv_outputs(params, execution)
@@ -191,6 +173,8 @@ def aiv(
     runner: Runner | None = None,
 ) -> AivOutputs:
     """
+    aiv
+    
     AFNI Image Viewer program. Shows the 2D images on the command line in an
     AFNI-like image viewer.
     
@@ -209,8 +193,6 @@ def aiv(
     Returns:
         NamedTuple of outputs (described in `AivOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(AIV_METADATA)
     params = aiv_params(
         verbose=verbose,
         quiet=quiet,
@@ -219,13 +201,13 @@ def aiv(
         pad=pad,
         input_images=input_images,
     )
-    return aiv_execute(params, execution)
+    return aiv_execute(params, runner)
 
 
 __all__ = [
     "AIV_METADATA",
     "AivOutputs",
-    "AivParameters",
     "aiv",
+    "aiv_execute",
     "aiv_params",
 ]