niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__script_check.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__SCRIPT_CHECK_METADATA = Metadata(
-    id="d81cacac508059d0cecc8bef5d4a8425946e1d54.boutiques",
+    id="ecd2a9292bb7df5d7ef5d0acef0705326b404a49.boutiques",
     name="@ScriptCheck",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,48 +14,22 @@ V__SCRIPT_CHECK_METADATA = Metadata(
 
 
 VScriptCheckParameters = typing.TypedDict('VScriptCheckParameters', {
-    "__STYXTYPE__": typing.Literal["@ScriptCheck"],
+    "@type": typing.NotRequired[typing.Literal["afni/@ScriptCheck"]],
+    "clean": bool,
+    "suffix": typing.NotRequired[str | None],
+    "scripts": list[InputPathType],
+})
+VScriptCheckParametersTagged = typing.TypedDict('VScriptCheckParametersTagged', {
+    "@type": typing.Literal["afni/@ScriptCheck"],
     "clean": bool,
     "suffix": typing.NotRequired[str | None],
     "scripts": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@ScriptCheck": v__script_check_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@ScriptCheck": v__script_check_outputs,
-    }.get(t)
 
 
 class VScriptCheckOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__script_check(...)`.
+    Output object returned when calling `VScriptCheckParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -69,7 +43,7 @@ def v__script_check_params(
     scripts: list[InputPathType],
     clean: bool = False,
     suffix: str | None = None,
-) -> VScriptCheckParameters:
+) -> VScriptCheckParametersTagged:
     """
     Build parameters.
     
@@ -81,7 +55,7 @@ def v__script_check_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@ScriptCheck",
+        "@type": "afni/@ScriptCheck",
         "clean": clean,
         "scripts": scripts,
     }
@@ -105,14 +79,14 @@ def v__script_check_cargs(
     """
     cargs = []
     cargs.append("@ScriptCheck")
-    if params.get("clean"):
+    if params.get("clean", False):
         cargs.append("-clean")
-    if params.get("suffix") is not None:
+    if params.get("suffix", None) is not None:
         cargs.extend([
             "-suffix",
-            params.get("suffix")
+            params.get("suffix", None)
         ])
-    cargs.extend([execution.input_file(f) for f in params.get("scripts")])
+    cargs.extend([execution.input_file(f) for f in params.get("scripts", None)])
     return cargs
 
 
@@ -139,9 +113,11 @@ def v__script_check_outputs(
 
 def v__script_check_execute(
     params: VScriptCheckParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VScriptCheckOutputs:
     """
+    @ScriptCheck
+    
     Checks scripts for improperly terminated lines and optionally cleans them.
     
     Author: AFNI Developers
@@ -150,10 +126,12 @@ def v__script_check_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VScriptCheckOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__SCRIPT_CHECK_METADATA)
     params = execution.params(params)
     cargs = v__script_check_cargs(params, execution)
     ret = v__script_check_outputs(params, execution)
@@ -168,6 +146,8 @@ def v__script_check(
     runner: Runner | None = None,
 ) -> VScriptCheckOutputs:
     """
+    @ScriptCheck
+    
     Checks scripts for improperly terminated lines and optionally cleans them.
     
     Author: AFNI Developers
@@ -182,20 +162,18 @@ def v__script_check(
     Returns:
         NamedTuple of outputs (described in `VScriptCheckOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__SCRIPT_CHECK_METADATA)
     params = v__script_check_params(
         clean=clean,
         suffix=suffix,
         scripts=scripts,
     )
-    return v__script_check_execute(params, execution)
+    return v__script_check_execute(params, runner)
 
 
 __all__ = [
     "VScriptCheckOutputs",
-    "VScriptCheckParameters",
     "V__SCRIPT_CHECK_METADATA",
     "v__script_check",
+    "v__script_check_execute",
     "v__script_check_params",
 ]

niwrap_afni/afni/v__shift_volume.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__SHIFT_VOLUME_METADATA = Metadata(
-    id="cc600997e0c495954f45b1b016157de5ebc451b5.boutiques",
+    id="e886b20c9364e4346612208307ee63b19d531072.boutiques",
     name="@Shift_Volume",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ V__SHIFT_VOLUME_METADATA = Metadata(
 
 
 VShiftVolumeParameters = typing.TypedDict('VShiftVolumeParameters', {
-    "__STYXTYPE__": typing.Literal["@Shift_Volume"],
+    "@type": typing.NotRequired[typing.Literal["afni/@Shift_Volume"]],
+    "rai_shift_vector": typing.NotRequired[list[float] | None],
+    "mni_anat_to_mni": bool,
+    "mni_to_mni_anat": bool,
+    "dset": InputPathType,
+    "no_cp": bool,
+    "prefix": str,
+})
+VShiftVolumeParametersTagged = typing.TypedDict('VShiftVolumeParametersTagged', {
+    "@type": typing.Literal["afni/@Shift_Volume"],
     "rai_shift_vector": typing.NotRequired[list[float] | None],
     "mni_anat_to_mni": bool,
     "mni_to_mni_anat": bool,
@@ -22,43 +31,11 @@ VShiftVolumeParameters = typing.TypedDict('VShiftVolumeParameters', {
     "no_cp": bool,
     "prefix": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@Shift_Volume": v__shift_volume_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@Shift_Volume": v__shift_volume_outputs,
-    }.get(t)
 
 
 class VShiftVolumeOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__shift_volume(...)`.
+    Output object returned when calling `VShiftVolumeParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -73,7 +50,7 @@ def v__shift_volume_params(
     mni_anat_to_mni: bool = False,
     mni_to_mni_anat: bool = False,
     no_cp: bool = False,
-) -> VShiftVolumeParameters:
+) -> VShiftVolumeParametersTagged:
     """
     Build parameters.
     
@@ -92,7 +69,7 @@ def v__shift_volume_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@Shift_Volume",
+        "@type": "afni/@Shift_Volume",
         "mni_anat_to_mni": mni_anat_to_mni,
         "mni_to_mni_anat": mni_to_mni_anat,
         "dset": dset,
@@ -119,24 +96,24 @@ def v__shift_volume_cargs(
     """
     cargs = []
     cargs.append("@Shift_Volume")
-    if params.get("rai_shift_vector") is not None:
+    if params.get("rai_shift_vector", None) is not None:
         cargs.extend([
             "-rai_shift",
-            *map(str, params.get("rai_shift_vector"))
+            *map(str, params.get("rai_shift_vector", None))
         ])
-    if params.get("mni_anat_to_mni"):
+    if params.get("mni_anat_to_mni", False):
         cargs.append("-MNI_Anat_to_MNI")
-    if params.get("mni_to_mni_anat"):
+    if params.get("mni_to_mni_anat", False):
         cargs.append("-MNI_to_MNI_Anat")
     cargs.extend([
         "-dset",
-        execution.input_file(params.get("dset"))
+        execution.input_file(params.get("dset", None))
     ])
-    if params.get("no_cp"):
+    if params.get("no_cp", False):
         cargs.append("-no_cp")
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
     return cargs
 
@@ -156,18 +133,20 @@ def v__shift_volume_outputs(
     """
     ret = VShiftVolumeOutputs(
         root=execution.output_file("."),
-        output_file=execution.output_file(params.get("prefix") + ".nii.gz"),
+        output_file=execution.output_file(params.get("prefix", None) + ".nii.gz"),
     )
     return ret
 
 
 def v__shift_volume_execute(
     params: VShiftVolumeParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VShiftVolumeOutputs:
     """
-    Tool to shift a dataset in the RAI coordinate system or between MNI anatomical
-    space and MNI space.
+    @Shift_Volume
+    
+    Tool to shift a dataset in the RAI coordinate system or between MNI
+    anatomical space and MNI space.
     
     Author: AFNI Developers
     
@@ -175,10 +154,12 @@ def v__shift_volume_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VShiftVolumeOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__SHIFT_VOLUME_METADATA)
     params = execution.params(params)
     cargs = v__shift_volume_cargs(params, execution)
     ret = v__shift_volume_outputs(params, execution)
@@ -196,8 +177,10 @@ def v__shift_volume(
     runner: Runner | None = None,
 ) -> VShiftVolumeOutputs:
     """
-    Tool to shift a dataset in the RAI coordinate system or between MNI anatomical
-    space and MNI space.
+    @Shift_Volume
+    
+    Tool to shift a dataset in the RAI coordinate system or between MNI
+    anatomical space and MNI space.
     
     Author: AFNI Developers
     
@@ -218,8 +201,6 @@ def v__shift_volume(
     Returns:
         NamedTuple of outputs (described in `VShiftVolumeOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__SHIFT_VOLUME_METADATA)
     params = v__shift_volume_params(
         rai_shift_vector=rai_shift_vector,
         mni_anat_to_mni=mni_anat_to_mni,
@@ -228,13 +209,13 @@ def v__shift_volume(
         no_cp=no_cp,
         prefix=prefix,
     )
-    return v__shift_volume_execute(params, execution)
+    return v__shift_volume_execute(params, runner)
 
 
 __all__ = [
     "VShiftVolumeOutputs",
-    "VShiftVolumeParameters",
     "V__SHIFT_VOLUME_METADATA",
     "v__shift_volume",
+    "v__shift_volume_execute",
     "v__shift_volume_params",
 ]

niwrap_afni/afni/v__show_dynamic_range.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__SHOW_DYNAMIC_RANGE_METADATA = Metadata(
-    id="79a18236c270604039c67089fe05e4d75deeff40.boutiques",
+    id="2b71199429f8c25442c744816458a31d2cae16d0.boutiques",
     name="@ShowDynamicRange",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__SHOW_DYNAMIC_RANGE_METADATA = Metadata(
 
 
 VShowDynamicRangeParameters = typing.TypedDict('VShowDynamicRangeParameters', {
-    "__STYXTYPE__": typing.Literal["@ShowDynamicRange"],
+    "@type": typing.NotRequired[typing.Literal["afni/@ShowDynamicRange"]],
+    "infile": InputPathType,
+})
+VShowDynamicRangeParametersTagged = typing.TypedDict('VShowDynamicRangeParametersTagged', {
+    "@type": typing.Literal["afni/@ShowDynamicRange"],
     "infile": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@ShowDynamicRange": v__show_dynamic_range_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@ShowDynamicRange": v__show_dynamic_range_outputs,
-    }.get(t)
 
 
 class VShowDynamicRangeOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__show_dynamic_range(...)`.
+    Output object returned when calling `VShowDynamicRangeParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -67,7 +39,7 @@ class VShowDynamicRangeOutputs(typing.NamedTuple):
 
 def v__show_dynamic_range_params(
     infile: InputPathType,
-) -> VShowDynamicRangeParameters:
+) -> VShowDynamicRangeParametersTagged:
     """
     Build parameters.
     
@@ -77,7 +49,7 @@ def v__show_dynamic_range_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@ShowDynamicRange",
+        "@type": "afni/@ShowDynamicRange",
         "infile": infile,
     }
     return params
@@ -98,7 +70,7 @@ def v__show_dynamic_range_cargs(
     """
     cargs = []
     cargs.append("@ShowDynamicRange")
-    cargs.append(execution.input_file(params.get("infile")))
+    cargs.append(execution.input_file(params.get("infile", None)))
     return cargs
 
 
@@ -117,19 +89,21 @@ def v__show_dynamic_range_outputs(
     """
     ret = VShowDynamicRangeOutputs(
         root=execution.output_file("."),
-        minpercchange_file=execution.output_file(pathlib.Path(params.get("infile")).name + "_minpercchange.nii.gz"),
-        range_file=execution.output_file(pathlib.Path(params.get("infile")).name + ".range.nii.gz"),
+        minpercchange_file=execution.output_file(pathlib.Path(params.get("infile", None)).name + "_minpercchange.nii.gz"),
+        range_file=execution.output_file(pathlib.Path(params.get("infile", None)).name + ".range.nii.gz"),
     )
     return ret
 
 
 def v__show_dynamic_range_execute(
     params: VShowDynamicRangeParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VShowDynamicRangeOutputs:
     """
-    The script checks the dynamic range of the time series data at locations inside
-    the brain.
+    @ShowDynamicRange
+    
+    The script checks the dynamic range of the time series data at locations
+    inside the brain.
     
     Author: AFNI Developers
     
@@ -137,10 +111,12 @@ def v__show_dynamic_range_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VShowDynamicRangeOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__SHOW_DYNAMIC_RANGE_METADATA)
     params = execution.params(params)
     cargs = v__show_dynamic_range_cargs(params, execution)
     ret = v__show_dynamic_range_outputs(params, execution)
@@ -153,8 +129,10 @@ def v__show_dynamic_range(
     runner: Runner | None = None,
 ) -> VShowDynamicRangeOutputs:
     """
-    The script checks the dynamic range of the time series data at locations inside
-    the brain.
+    @ShowDynamicRange
+    
+    The script checks the dynamic range of the time series data at locations
+    inside the brain.
     
     Author: AFNI Developers
     
@@ -166,18 +144,16 @@ def v__show_dynamic_range(
     Returns:
         NamedTuple of outputs (described in `VShowDynamicRangeOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__SHOW_DYNAMIC_RANGE_METADATA)
     params = v__show_dynamic_range_params(
         infile=infile,
     )
-    return v__show_dynamic_range_execute(params, execution)
+    return v__show_dynamic_range_execute(params, runner)
 
 
 __all__ = [
     "VShowDynamicRangeOutputs",
-    "VShowDynamicRangeParameters",
     "V__SHOW_DYNAMIC_RANGE_METADATA",
     "v__show_dynamic_range",
+    "v__show_dynamic_range_execute",
     "v__show_dynamic_range_params",
 ]