niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- niwrap_afni/afni/__init__.py +601 -18
- niwrap_afni/afni/abids_json_info_py.py +35 -51
- niwrap_afni/afni/abids_json_tool_py.py +48 -59
- niwrap_afni/afni/{abids_tool.py → abids_tool_py.py} +60 -78
- niwrap_afni/afni/adjunct_apqc_tsnr_general.py +83 -84
- niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +31 -50
- niwrap_afni/afni/adjunct_calc_mont_dims_py.py +20 -43
- niwrap_afni/afni/adjunct_combine_str_py.py +29 -51
- niwrap_afni/afni/adjunct_is_label_py.py +22 -44
- niwrap_afni/afni/adjunct_make_script_and_rst_py.py +35 -55
- niwrap_afni/afni/adjunct_select_str_py.py +24 -45
- niwrap_afni/afni/{adjunct_simplify_cost.py → adjunct_simplify_cost_py.py} +49 -70
- niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +36 -55
- niwrap_afni/afni/adjunct_suma_fs_roi_info.py +28 -48
- niwrap_afni/afni/adjunct_tort_plot_dp_align.py +38 -58
- niwrap_afni/afni/adwarp.py +43 -59
- niwrap_afni/afni/afni.py +77 -77
- niwrap_afni/afni/afni_batch_r.py +28 -47
- niwrap_afni/afni/afni_check_omp.py +21 -44
- niwrap_afni/afni/afni_history.py +72 -75
- niwrap_afni/afni/afni_open.py +49 -58
- niwrap_afni/afni/afni_proc_py.py +50 -64
- niwrap_afni/afni/afni_run_r.py +22 -44
- niwrap_afni/afni/afni_system_check_py.py +43 -57
- niwrap_afni/afni/aiv.py +33 -51
- niwrap_afni/afni/{align_epi_anat.py → align_epi_anat_py.py} +84 -92
- niwrap_afni/afni/analyze_trace.py +48 -61
- niwrap_afni/afni/{ap_run_simple_rest.py → ap_run_simple_rest_tcsh.py} +72 -90
- niwrap_afni/afni/{apqc_make_html.py → apqc_make_html_py.py} +45 -68
- niwrap_afni/afni/apqc_make_tcsh_py.py +34 -53
- niwrap_afni/afni/apsearch.py +26 -48
- niwrap_afni/afni/auto_warp_py.py +98 -89
- niwrap_afni/afni/balloon.py +33 -51
- niwrap_afni/afni/bayes_view.py +29 -50
- niwrap_afni/afni/bayesian_group_ana_py.py +57 -68
- niwrap_afni/afni/brain_skin.py +64 -76
- niwrap_afni/afni/build_afni_py.py +62 -71
- niwrap_afni/afni/cat_matvec.py +26 -46
- niwrap_afni/afni/ccalc.py +23 -45
- niwrap_afni/afni/cifti_tool.py +42 -58
- niwrap_afni/afni/cjpeg.py +34 -52
- niwrap_afni/afni/clust_exp_hist_table_py.py +33 -54
- niwrap_afni/afni/clust_exp_stat_parse_py.py +57 -69
- niwrap_afni/afni/column_cat.py +32 -54
- niwrap_afni/afni/compare_surfaces.py +58 -68
- niwrap_afni/afni/{convert_cdiflist_to_grads.py → convert_cdiflist_to_grads_py.py} +60 -78
- niwrap_afni/afni/convert_dset.py +73 -77
- niwrap_afni/afni/convert_surface.py +47 -62
- niwrap_afni/afni/convex_hull.py +68 -77
- niwrap_afni/afni/count.py +56 -66
- niwrap_afni/afni/create_icosahedron.py +44 -58
- niwrap_afni/afni/dcm2niix_afni.py +102 -98
- niwrap_afni/afni/dicom_hdr.py +39 -53
- niwrap_afni/afni/dicom_hinfo.py +31 -49
- niwrap_afni/afni/dicom_to_raw.py +21 -45
- niwrap_afni/afni/dimon.py +45 -64
- niwrap_afni/afni/djpeg.py +34 -52
- niwrap_afni/afni/drive_suma.py +99 -92
- niwrap_afni/afni/dsetstat2p.py +30 -49
- niwrap_afni/afni/dtistudio_fiberto_segments.py +26 -48
- niwrap_afni/afni/{epi_b0_correct.py → epi_b0_correct_py.py} +110 -111
- niwrap_afni/afni/examine_xmat.py +45 -62
- niwrap_afni/afni/fat_mat2d_plot_py.py +88 -86
- niwrap_afni/afni/fat_mat_sel_py.py +87 -89
- niwrap_afni/afni/{fat_mat_tableize.py → fat_mat_tableize_py.py} +72 -87
- niwrap_afni/afni/fat_mvm_gridconv_py.py +24 -51
- niwrap_afni/afni/{fat_mvm_prep.py → fat_mvm_prep_py.py} +61 -79
- niwrap_afni/afni/fat_mvm_scripter_py.py +53 -65
- niwrap_afni/afni/fat_proc_align_anat_pair.py +50 -63
- niwrap_afni/afni/fat_proc_axialize_anat.py +76 -79
- niwrap_afni/afni/fat_proc_connec_vis.py +56 -70
- niwrap_afni/afni/fat_proc_convert_dcm_anat.py +44 -59
- niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +74 -79
- niwrap_afni/afni/fat_proc_decmap.py +51 -65
- niwrap_afni/afni/fat_proc_dwi_to_dt.py +94 -93
- niwrap_afni/afni/fat_proc_filter_dwis.py +47 -61
- niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +41 -62
- niwrap_afni/afni/fat_proc_map_to_dti.py +53 -65
- niwrap_afni/afni/fat_proc_select_vols.py +38 -55
- niwrap_afni/afni/{fat_roi_row.py → fat_roi_row_py.py} +58 -79
- niwrap_afni/afni/fatcat_matplot.py +22 -44
- niwrap_afni/afni/fdrval.py +34 -51
- niwrap_afni/afni/fftest.py +26 -46
- niwrap_afni/afni/file_tool.py +111 -94
- niwrap_afni/afni/fim2.py +85 -87
- niwrap_afni/afni/{find_variance_lines.py → find_variance_lines_tcsh.py} +90 -109
- niwrap_afni/afni/firdesign.py +33 -51
- niwrap_afni/afni/float_scan.py +27 -48
- niwrap_afni/afni/from3d.py +42 -60
- niwrap_afni/afni/fsread_annot.py +52 -66
- niwrap_afni/afni/gen_epi_review_py.py +47 -61
- niwrap_afni/afni/{gen_group_command.py → gen_group_command_py.py} +82 -95
- niwrap_afni/afni/{gen_ss_review_scripts.py → gen_ss_review_scripts_py.py} +100 -106
- niwrap_afni/afni/gen_ss_review_table_py.py +55 -66
- niwrap_afni/afni/get_afni_model_prf.py +26 -46
- niwrap_afni/afni/get_afni_model_prf_6.py +32 -49
- niwrap_afni/afni/get_afni_model_prf_6_bad.py +30 -48
- niwrap_afni/afni/gifti_tool.py +77 -80
- niwrap_afni/afni/gltsymtest.py +28 -49
- niwrap_afni/afni/help_format.py +20 -44
- niwrap_afni/afni/im2niml.py +24 -48
- niwrap_afni/afni/images_equal.py +24 -46
- niwrap_afni/afni/imand.py +30 -52
- niwrap_afni/afni/imaver.py +32 -54
- niwrap_afni/afni/imcalc.py +30 -51
- niwrap_afni/afni/imcat.py +89 -87
- niwrap_afni/afni/imcutup.py +35 -55
- niwrap_afni/afni/imdump.py +20 -44
- niwrap_afni/afni/immask.py +35 -53
- niwrap_afni/afni/imreg.py +70 -75
- niwrap_afni/afni/imrotate.py +33 -51
- niwrap_afni/afni/imstack.py +28 -50
- niwrap_afni/afni/imstat.py +29 -50
- niwrap_afni/afni/imupsam.py +27 -48
- niwrap_afni/afni/init_user_dotfiles_py.py +59 -66
- niwrap_afni/afni/inspec.py +37 -54
- niwrap_afni/afni/iso_surface.py +56 -67
- niwrap_afni/afni/make_color_map.py +77 -82
- niwrap_afni/afni/make_pq_script_py.py +27 -48
- niwrap_afni/afni/make_random_timing_py.py +85 -88
- niwrap_afni/afni/make_stim_times_py.py +49 -62
- niwrap_afni/afni/map_icosahedron.py +51 -62
- niwrap_afni/afni/map_track_id.py +35 -52
- niwrap_afni/afni/mba.py +62 -72
- niwrap_afni/afni/meica_py.py +38 -55
- niwrap_afni/afni/myget.py +26 -48
- niwrap_afni/afni/neuro_deconvolve_py.py +51 -66
- niwrap_afni/afni/nicat.py +27 -47
- niwrap_afni/afni/niccc.py +50 -63
- niwrap_afni/afni/nifti_tool.py +52 -65
- niwrap_afni/afni/niml_feedme.py +36 -53
- niwrap_afni/afni/nsize.py +23 -46
- niwrap_afni/afni/p2dsetstat.py +34 -51
- niwrap_afni/afni/parse_fs_lt_log_py.py +29 -48
- niwrap_afni/afni/plugout_drive.py +56 -65
- niwrap_afni/afni/plugout_ijk.py +46 -59
- niwrap_afni/afni/plugout_tt.py +48 -60
- niwrap_afni/afni/plugout_tta.py +49 -63
- niwrap_afni/afni/prompt_popup.py +35 -53
- niwrap_afni/afni/prompt_user.py +26 -47
- niwrap_afni/afni/pta.py +44 -61
- niwrap_afni/afni/qdelaunay.py +100 -91
- niwrap_afni/afni/qhull.py +63 -67
- niwrap_afni/afni/quick_alpha_vals_py.py +23 -46
- niwrap_afni/afni/quickspec.py +41 -59
- niwrap_afni/afni/quickspec_sl.py +46 -63
- niwrap_afni/afni/quotize.py +25 -47
- niwrap_afni/afni/r_pkgs_install.py +30 -50
- niwrap_afni/afni/rba.py +93 -92
- niwrap_afni/afni/rbox.py +68 -71
- niwrap_afni/afni/read_matlab_files_py.py +32 -51
- niwrap_afni/afni/{realtime_receiver.py → realtime_receiver_py.py} +76 -88
- niwrap_afni/afni/retro_ts_py.py +84 -84
- niwrap_afni/afni/rmz.py +27 -47
- niwrap_afni/afni/roi2dataset.py +47 -60
- niwrap_afni/afni/roigrow.py +38 -55
- niwrap_afni/afni/rotcom.py +27 -50
- niwrap_afni/afni/rsfgen.py +53 -65
- niwrap_afni/afni/rtfeedme.py +47 -60
- niwrap_afni/afni/samp_bias.py +42 -60
- niwrap_afni/afni/scale_to_map.py +98 -90
- niwrap_afni/afni/serial_helper.py +48 -60
- niwrap_afni/afni/sfim.py +31 -54
- niwrap_afni/afni/slow_surf_clustsim_py.py +44 -57
- niwrap_afni/afni/spharm_deco.py +47 -68
- niwrap_afni/afni/spharm_reco.py +38 -54
- niwrap_afni/afni/stimband.py +34 -53
- niwrap_afni/afni/strblast.py +38 -55
- niwrap_afni/afni/suma_change_spec.py +34 -53
- niwrap_afni/afni/suma_glxdino.py +24 -47
- niwrap_afni/afni/surf2_vol_coord.py +46 -60
- niwrap_afni/afni/surf_clust.py +113 -99
- niwrap_afni/afni/surf_dist.py +37 -54
- niwrap_afni/afni/surf_dset_info.py +59 -64
- niwrap_afni/afni/surf_extrema.py +43 -60
- niwrap_afni/afni/surf_fwhm.py +59 -70
- niwrap_afni/afni/surf_info.py +67 -72
- niwrap_afni/afni/surf_layers.py +49 -70
- niwrap_afni/afni/surf_localstat.py +33 -52
- niwrap_afni/afni/surf_measures.py +64 -71
- niwrap_afni/afni/surf_mesh.py +37 -54
- niwrap_afni/afni/surf_patch.py +68 -72
- niwrap_afni/afni/surf_qual.py +38 -57
- niwrap_afni/afni/surf_retino_map.py +32 -52
- niwrap_afni/afni/surf_smooth.py +63 -72
- niwrap_afni/afni/surf_to_surf.py +55 -67
- niwrap_afni/afni/surface_metrics.py +68 -69
- niwrap_afni/afni/tedana_wrapper_py.py +51 -63
- niwrap_afni/afni/tfim.py +39 -57
- niwrap_afni/afni/timing_tool_py.py +72 -78
- niwrap_afni/afni/to3d.py +125 -110
- niwrap_afni/afni/tokens.py +24 -46
- niwrap_afni/afni/trr.py +70 -77
- niwrap_afni/afni/uber_align_test_py.py +41 -55
- niwrap_afni/afni/uber_proc_py.py +21 -44
- niwrap_afni/afni/{uber_skel.py → uber_skel_py.py} +72 -85
- niwrap_afni/afni/uber_subject_py.py +143 -124
- niwrap_afni/afni/un_warp_epi_py.py +34 -50
- niwrap_afni/afni/uniq_images.py +26 -50
- niwrap_afni/afni/v_1d_apar2mat.py +42 -54
- niwrap_afni/afni/v_1d_astrip.py +20 -44
- niwrap_afni/afni/v_1d_bandpass.py +34 -51
- niwrap_afni/afni/v_1d_bport.py +47 -60
- niwrap_afni/afni/v_1d_correlate.py +42 -57
- niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +72 -76
- niwrap_afni/afni/v_1d_flag_motion.py +30 -52
- niwrap_afni/afni/v_1d_marry.py +25 -47
- niwrap_afni/afni/v_1d_nlfit.py +29 -49
- niwrap_afni/afni/v_1d_rplot.py +72 -78
- niwrap_afni/afni/v_1d_sem.py +60 -69
- niwrap_afni/afni/v_1d_tool_py.py +53 -65
- niwrap_afni/afni/v_1d_tsort.py +31 -49
- niwrap_afni/afni/v_1d_upsample.py +24 -46
- niwrap_afni/afni/v_1dcat.py +38 -54
- niwrap_afni/afni/v_1ddot.py +34 -51
- niwrap_afni/afni/v_1deval.py +44 -61
- niwrap_afni/afni/v_1dfft.py +40 -56
- niwrap_afni/afni/v_1dgen_arma11.py +57 -70
- niwrap_afni/afni/v_1dgrayplot.py +38 -53
- niwrap_afni/afni/v_1dmatcalc.py +25 -49
- niwrap_afni/afni/v_1dnorm.py +31 -50
- niwrap_afni/afni/v_1dplot.py +191 -155
- niwrap_afni/afni/v_1dplot_py.py +110 -103
- niwrap_afni/afni/v_1dsound.py +44 -58
- niwrap_afni/afni/v_1dsum.py +36 -53
- niwrap_afni/afni/v_1dsvd.py +45 -59
- niwrap_afni/afni/v_1dtranspose.py +24 -47
- niwrap_afni/afni/v_24swap.py +25 -46
- niwrap_afni/afni/v_2d_im_reg.py +55 -68
- niwrap_afni/afni/v_2dcat.py +86 -86
- niwrap_afni/afni/v_2perm.py +35 -54
- niwrap_afni/afni/v_2swap.py +22 -44
- niwrap_afni/afni/v_3d_aboverlap.py +32 -51
- niwrap_afni/afni/v_3d_acost.py +28 -49
- niwrap_afni/afni/v_3d_afnito3_d.py +28 -49
- niwrap_afni/afni/v_3d_afnito_analyze.py +31 -52
- niwrap_afni/afni/v_3d_afnito_nifti.py +36 -53
- niwrap_afni/afni/v_3d_afnito_niml.py +27 -47
- niwrap_afni/afni/v_3d_afnito_raw.py +25 -46
- niwrap_afni/afni/v_3d_allineate.py +63 -74
- niwrap_afni/afni/v_3d_amp_to_rsfc.py +39 -58
- niwrap_afni/afni/v_3d_anhist.py +41 -56
- niwrap_afni/afni/v_3d_anova.py +64 -75
- niwrap_afni/afni/v_3d_anova2.py +101 -100
- niwrap_afni/afni/v_3d_anova3.py +138 -126
- niwrap_afni/afni/v_3d_attribute.py +40 -55
- niwrap_afni/afni/v_3d_auto_tcorrelate.py +52 -64
- niwrap_afni/afni/v_3d_autobox.py +56 -66
- niwrap_afni/afni/v_3d_automask.py +40 -58
- niwrap_afni/afni/v_3d_ball_match.py +38 -56
- niwrap_afni/afni/v_3d_bandpass.py +66 -74
- niwrap_afni/afni/v_3d_blur_in_mask.py +45 -59
- niwrap_afni/afni/v_3d_blur_to_fwhm.py +41 -58
- niwrap_afni/afni/v_3d_brain_sync.py +40 -58
- niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +52 -63
- niwrap_afni/afni/v_3d_brick_stat.py +83 -78
- niwrap_afni/afni/v_3d_clip_level.py +32 -52
- niwrap_afni/afni/v_3d_clust_count.py +30 -51
- niwrap_afni/afni/v_3d_clust_sim.py +85 -88
- niwrap_afni/afni/v_3d_clusterize.py +81 -82
- niwrap_afni/afni/v_3d_cm.py +43 -59
- niwrap_afni/afni/v_3d_compare_affine.py +31 -53
- niwrap_afni/afni/v_3d_conformist.py +24 -46
- niwrap_afni/afni/v_3d_convolve.py +26 -48
- niwrap_afni/afni/v_3d_cruiseto_afni.py +48 -60
- niwrap_afni/afni/v_3d_deconvolve.py +68 -78
- niwrap_afni/afni/v_3d_degree_centrality.py +49 -66
- niwrap_afni/afni/v_3d_depth_map.py +53 -65
- niwrap_afni/afni/v_3d_despike.py +28 -51
- niwrap_afni/afni/v_3d_detrend.py +24 -47
- niwrap_afni/afni/v_3d_dft.py +40 -58
- niwrap_afni/afni/v_3d_diff.py +37 -54
- niwrap_afni/afni/v_3d_dteig.py +35 -55
- niwrap_afni/afni/v_3d_dtto_dwi.py +37 -54
- niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +45 -60
- niwrap_afni/afni/v_3d_dwito_dt.py +84 -86
- niwrap_afni/afni/v_3d_dwuncert.py +43 -59
- niwrap_afni/afni/v_3d_ecm.py +65 -73
- niwrap_afni/afni/v_3d_edu_01_scale.py +28 -53
- niwrap_afni/afni/v_3d_eigs_to_dt.py +38 -55
- niwrap_afni/afni/v_3d_empty.py +31 -52
- niwrap_afni/afni/v_3d_entropy.py +22 -44
- niwrap_afni/afni/v_3d_errts_cormat.py +39 -58
- niwrap_afni/afni/v_3d_exchange.py +30 -50
- niwrap_afni/afni/v_3d_extract_group_in_corr.py +28 -51
- niwrap_afni/afni/v_3d_extrema.py +67 -72
- niwrap_afni/afni/v_3d_fdr.py +54 -65
- niwrap_afni/afni/v_3d_fft.py +52 -65
- niwrap_afni/afni/v_3d_friedman.py +30 -53
- niwrap_afni/afni/v_3d_fwhmx.py +51 -63
- niwrap_afni/afni/v_3d_gen_feature_dist.py +50 -63
- niwrap_afni/afni/v_3d_gen_priors.py +87 -86
- niwrap_afni/afni/v_3d_getrow.py +34 -54
- niwrap_afni/afni/v_3d_grayplot.py +58 -69
- niwrap_afni/afni/v_3d_group_in_corr.py +87 -84
- niwrap_afni/afni/v_3d_hist.py +74 -78
- niwrap_afni/afni/v_3d_icc.py +55 -66
- niwrap_afni/afni/v_3d_intracranial.py +41 -57
- niwrap_afni/afni/v_3d_inv_fmri.py +48 -62
- niwrap_afni/afni/v_3d_isc.py +43 -59
- niwrap_afni/afni/v_3d_kruskal_wallis.py +31 -51
- niwrap_afni/afni/v_3d_lfcd.py +47 -63
- niwrap_afni/afni/v_3d_lme.py +97 -92
- niwrap_afni/afni/v_3d_lmer.py +77 -80
- niwrap_afni/afni/v_3d_local_acf.py +35 -55
- niwrap_afni/afni/v_3d_local_bistat.py +50 -63
- niwrap_afni/afni/v_3d_local_histog.py +46 -61
- niwrap_afni/afni/v_3d_local_pv.py +50 -64
- niwrap_afni/afni/v_3d_local_svd.py +38 -54
- niwrap_afni/afni/v_3d_local_unifize.py +46 -62
- niwrap_afni/afni/v_3d_localstat.py +76 -81
- niwrap_afni/afni/v_3d_lomb_scargle.py +42 -59
- niwrap_afni/afni/v_3d_lrflip.py +35 -55
- niwrap_afni/afni/v_3d_lss.py +39 -56
- niwrap_afni/afni/v_3d_mann_whitney.py +30 -54
- niwrap_afni/afni/v_3d_mask_to_ascii.py +25 -47
- niwrap_afni/afni/v_3d_match.py +49 -65
- niwrap_afni/afni/v_3d_mean.py +64 -70
- niwrap_afni/afni/v_3d_median_filter.py +39 -58
- niwrap_afni/afni/v_3d_mema.py +89 -87
- niwrap_afni/afni/v_3d_mepfm.py +43 -63
- niwrap_afni/afni/v_3d_mse.py +44 -60
- niwrap_afni/afni/v_3d_mss.py +66 -73
- niwrap_afni/afni/v_3d_multi_thresh.py +47 -61
- niwrap_afni/afni/v_3d_mvm.py +62 -72
- niwrap_afni/afni/v_3d_mvm_validator.py +23 -49
- niwrap_afni/afni/v_3d_net_corr.py +67 -72
- niwrap_afni/afni/v_3d_nlfim.py +134 -122
- niwrap_afni/afni/v_3d_normality_test.py +27 -48
- niwrap_afni/afni/v_3d_notes.py +36 -53
- niwrap_afni/afni/v_3d_nwarp_adjust.py +34 -56
- niwrap_afni/afni/v_3d_nwarp_apply.py +59 -73
- niwrap_afni/afni/v_3d_nwarp_cat.py +42 -58
- niwrap_afni/afni/v_3d_nwarp_funcs.py +35 -54
- niwrap_afni/afni/v_3d_nwarp_xyz.py +31 -52
- niwrap_afni/afni/v_3d_overlap.py +27 -49
- niwrap_afni/afni/{v_3d_par2_afni.py → v_3d_par2_afni_pl.py} +65 -80
- niwrap_afni/afni/v_3d_periodogram.py +35 -56
- niwrap_afni/afni/v_3d_pfm.py +62 -72
- niwrap_afni/afni/v_3d_polyfit.py +62 -73
- niwrap_afni/afni/v_3d_pval.py +32 -51
- niwrap_afni/afni/v_3d_pvmap.py +31 -52
- niwrap_afni/afni/v_3d_qwarp.py +64 -67
- niwrap_afni/afni/v_3d_rank.py +30 -51
- niwrap_afni/afni/v_3d_rankizer.py +37 -56
- niwrap_afni/afni/v_3d_re_ho.py +65 -76
- niwrap_afni/afni/v_3d_reg_ana.py +58 -68
- niwrap_afni/afni/v_3d_remlfit.py +64 -74
- niwrap_afni/afni/v_3d_retino_phase.py +71 -80
- niwrap_afni/afni/{v_3_droimaker.py → v_3d_roimaker.py} +100 -105
- niwrap_afni/afni/v_3d_roistats.py +52 -62
- niwrap_afni/afni/v_3d_row_fillin.py +33 -53
- niwrap_afni/afni/v_3d_rprog_demo.py +43 -57
- niwrap_afni/afni/v_3d_rsfc.py +78 -79
- niwrap_afni/afni/v_3d_seg.py +80 -86
- niwrap_afni/afni/v_3d_setup_group_in_corr.py +46 -60
- niwrap_afni/afni/v_3d_sharpen.py +30 -52
- niwrap_afni/afni/v_3d_signatures.py +33 -52
- niwrap_afni/afni/v_3d_skull_strip.py +27 -49
- niwrap_afni/afni/v_3d_slice_ndice.py +36 -54
- niwrap_afni/afni/v_3d_space_time_corr.py +36 -54
- niwrap_afni/afni/v_3d_spat_norm.py +40 -56
- niwrap_afni/afni/v_3d_stat_clust.py +44 -60
- niwrap_afni/afni/v_3d_surf2_vol.py +84 -87
- niwrap_afni/afni/v_3d_surf_mask.py +44 -60
- niwrap_afni/afni/v_3d_synthesize.py +34 -51
- niwrap_afni/afni/v_3d_tagalign.py +54 -64
- niwrap_afni/afni/v_3d_tcat.py +34 -53
- niwrap_afni/afni/v_3d_tcorr1_d.py +40 -57
- niwrap_afni/afni/v_3d_tcorr_map.py +66 -73
- niwrap_afni/afni/v_3d_tcorrelate.py +59 -68
- niwrap_afni/afni/v_3d_tfilter.py +29 -51
- niwrap_afni/afni/v_3d_tfitter.py +71 -78
- niwrap_afni/afni/v_3d_threeto_rgb.py +41 -58
- niwrap_afni/afni/v_3d_tnorm.py +37 -54
- niwrap_afni/afni/v_3d_tortoiseto_here.py +36 -55
- niwrap_afni/afni/v_3d_toutcount.py +44 -59
- niwrap_afni/afni/v_3d_toy_prog.py +54 -62
- niwrap_afni/afni/v_3d_tproject.py +77 -83
- niwrap_afni/afni/v_3d_tqual.py +36 -53
- niwrap_afni/afni/v_3d_track_id.py +139 -120
- niwrap_afni/afni/v_3d_trfix.py +33 -53
- niwrap_afni/afni/v_3d_tsgen.py +55 -66
- niwrap_afni/afni/v_3d_tshift.py +59 -71
- niwrap_afni/afni/v_3d_tsmooth.py +58 -69
- niwrap_afni/afni/v_3d_tsort.py +43 -57
- niwrap_afni/afni/v_3d_tsplit4_d.py +27 -51
- niwrap_afni/afni/v_3d_tstat.py +151 -115
- niwrap_afni/afni/v_3d_tto1_d.py +34 -53
- niwrap_afni/afni/v_3d_twoto_complex.py +35 -54
- niwrap_afni/afni/v_3d_undump.py +65 -72
- niwrap_afni/afni/v_3d_unifize.py +56 -67
- niwrap_afni/afni/v_3d_upsample.py +34 -53
- niwrap_afni/afni/v_3d_vec_rgb_to_hsl.py +33 -54
- niwrap_afni/afni/v_3d_vol2_surf.py +125 -108
- niwrap_afni/afni/v_3d_warp.py +71 -73
- niwrap_afni/afni/v_3d_warp_drive.py +108 -95
- niwrap_afni/afni/v_3d_wilcoxon.py +35 -53
- niwrap_afni/afni/v_3d_winsor.py +45 -61
- niwrap_afni/afni/v_3d_xclust_sim.py +64 -74
- niwrap_afni/afni/v_3d_xyzcat.py +30 -51
- niwrap_afni/afni/v_3d_zcat.py +36 -54
- niwrap_afni/afni/v_3d_zcutup.py +27 -49
- niwrap_afni/afni/v_3d_zeropad.py +62 -72
- niwrap_afni/afni/v_3d_zipper_zapper.py +63 -72
- niwrap_afni/afni/v_3d_zregrid.py +36 -55
- niwrap_afni/afni/v_3danisosmooth.py +72 -75
- niwrap_afni/afni/v_3daxialize.py +41 -56
- niwrap_afni/afni/v_3dbucket.py +43 -57
- niwrap_afni/afni/v_3dcalc.py +46 -61
- niwrap_afni/afni/v_3dclust.py +64 -69
- niwrap_afni/afni/v_3dcopy.py +32 -49
- niwrap_afni/afni/v_3ddelay.py +83 -84
- niwrap_afni/afni/v_3ddot.py +50 -60
- niwrap_afni/afni/v_3ddot_beta.py +28 -49
- niwrap_afni/afni/v_3dedge3.py +40 -56
- niwrap_afni/afni/v_3dedgedog.py +59 -72
- niwrap_afni/afni/v_3dfim_.py +60 -73
- niwrap_afni/afni/v_3dfractionize.py +36 -54
- niwrap_afni/afni/v_3dhistog.py +63 -70
- niwrap_afni/afni/v_3dinfill.py +48 -63
- niwrap_afni/afni/v_3dinfo.py +250 -161
- niwrap_afni/afni/v_3dkmeans.py +73 -79
- niwrap_afni/afni/v_3dmask_svd.py +46 -62
- niwrap_afni/afni/v_3dmask_tool.py +53 -65
- niwrap_afni/afni/v_3dmaskave.py +36 -56
- niwrap_afni/afni/v_3dmaskdump.py +73 -78
- niwrap_afni/afni/v_3dmatcalc.py +29 -50
- niwrap_afni/afni/v_3dmatmult.py +31 -51
- niwrap_afni/afni/v_3dmaxdisp.py +30 -50
- niwrap_afni/afni/v_3dmaxima.py +68 -70
- niwrap_afni/afni/v_3dmerge.py +48 -61
- niwrap_afni/afni/v_3dnewid.py +37 -53
- niwrap_afni/afni/v_3dnvals.py +24 -45
- niwrap_afni/afni/v_3dpc.py +58 -68
- niwrap_afni/afni/v_3drefit.py +65 -73
- niwrap_afni/afni/v_3drename.py +22 -44
- niwrap_afni/afni/v_3dresample.py +38 -56
- niwrap_afni/afni/v_3dretroicor.py +51 -67
- niwrap_afni/afni/v_3drotate.py +83 -83
- niwrap_afni/afni/v_3dsvm.py +90 -88
- niwrap_afni/afni/v_3dsvm_linpredict.py +25 -47
- niwrap_afni/afni/v_3dto_xdataset.py +25 -47
- niwrap_afni/afni/v_3dttest__.py +77 -81
- niwrap_afni/afni/v_3dvolreg.py +60 -70
- niwrap_afni/afni/v_4swap.py +22 -44
- niwrap_afni/afni/v__1d_diff_mag.py +20 -44
- niwrap_afni/afni/v__2dwarper.py +20 -44
- niwrap_afni/afni/v__2dwarper_allin.py +28 -50
- niwrap_afni/afni/v__4_daverage.py +22 -44
- niwrap_afni/afni/v__add_edge.py +59 -69
- niwrap_afni/afni/v__afni_env.py +42 -56
- niwrap_afni/afni/v__afni_orient2_raimap.py +20 -43
- niwrap_afni/afni/v__afni_orient_sign.py +21 -45
- niwrap_afni/afni/v__afni_r_package_install.py +34 -52
- niwrap_afni/afni/v__afni_refacer_make_master.py +20 -44
- niwrap_afni/afni/v__afni_refacer_make_onebig_a12.py +21 -45
- niwrap_afni/afni/v__afni_refacer_run.py +55 -67
- niwrap_afni/afni/v__afni_run_me.py +24 -45
- niwrap_afni/afni/v__align_centers.py +57 -68
- niwrap_afni/afni/v__align_partial_oblique.py +42 -58
- niwrap_afni/afni/v__anaticor.py +50 -61
- niwrap_afni/afni/v__animal_warper.py +113 -104
- niwrap_afni/afni/v__atlasize.py +67 -74
- niwrap_afni/afni/v__auto_tlrc.py +119 -105
- niwrap_afni/afni/v__build_afni_xlib.py +30 -48
- niwrap_afni/afni/v__center_distance.py +22 -45
- niwrap_afni/afni/v__chauffeur_afni.py +68 -75
- niwrap_afni/afni/v__check_for_afni_dset.py +21 -45
- niwrap_afni/afni/v__clip_volume.py +71 -78
- niwrap_afni/afni/v__clust_exp_cat_lab.py +25 -47
- niwrap_afni/afni/v__clust_exp_run_shiny.py +22 -44
- niwrap_afni/afni/v__command_globb.py +27 -51
- niwrap_afni/afni/v__compute_gcor.py +38 -56
- niwrap_afni/afni/v__compute_oc_weights.py +47 -62
- niwrap_afni/afni/v__deblank_file_names.py +35 -51
- niwrap_afni/afni/v__demo_prompt.py +20 -44
- niwrap_afni/afni/v__dice_metric.py +48 -59
- niwrap_afni/afni/v__diff_files.py +47 -58
- niwrap_afni/afni/v__diff_tree.py +61 -67
- niwrap_afni/afni/v__djunct_4d_imager.py +37 -58
- niwrap_afni/afni/v__djunct_4d_slices_to_3d_vol.py +20 -44
- niwrap_afni/afni/v__djunct_anonymize.py +28 -48
- niwrap_afni/afni/v__djunct_dwi_selector_tcsh.py +170 -0
- niwrap_afni/afni/v__djunct_edgy_align_check.py +88 -86
- niwrap_afni/afni/v__djunct_modal_smoothing_with_rep.py +43 -60
- niwrap_afni/afni/v__djunct_montage_coordinator.py +36 -54
- niwrap_afni/afni/v__djunct_overlap_check.py +80 -80
- niwrap_afni/afni/v__djunct_ssw_intermed_edge_imgs.py +54 -63
- niwrap_afni/afni/v__do_examples.py +20 -44
- niwrap_afni/afni/v__electro_grid.py +35 -54
- niwrap_afni/afni/v__examine_gen_feat_dists.py +42 -57
- niwrap_afni/afni/v__extract_meica_ortvec.py +36 -55
- niwrap_afni/afni/v__fast_roi.py +41 -56
- niwrap_afni/afni/v__fat_tract_colorize.py +37 -55
- niwrap_afni/afni/v__find_afni_dset_path.py +30 -48
- niwrap_afni/afni/v__fix_fssphere.py +32 -51
- niwrap_afni/afni/v__float_fix.py +24 -47
- niwrap_afni/afni/v__from_rai.py +22 -44
- niwrap_afni/afni/v__fs_roi_label.py +45 -60
- niwrap_afni/afni/v__fslabel2dset.py +33 -52
- niwrap_afni/afni/v__get_afni_dims.py +20 -44
- niwrap_afni/afni/v__get_afni_id.py +20 -44
- niwrap_afni/afni/v__get_afni_orient.py +23 -46
- niwrap_afni/afni/v__get_afni_prefix.py +23 -45
- niwrap_afni/afni/v__get_afni_res.py +23 -45
- niwrap_afni/afni/v__get_afni_version.py +21 -45
- niwrap_afni/afni/v__get_afni_view.py +20 -44
- niwrap_afni/afni/v__grad_flip_test.py +58 -69
- niwrap_afni/afni/v__grayplot.py +33 -53
- niwrap_afni/afni/v__help_afni.py +31 -49
- niwrap_afni/afni/v__is_oblique.py +20 -44
- niwrap_afni/afni/v__iso_masks.py +23 -45
- niwrap_afni/afni/v__make_label_table.py +116 -106
- niwrap_afni/afni/v__make_plug_diff.py +32 -49
- niwrap_afni/afni/v__measure_bb_thick.py +59 -72
- niwrap_afni/afni/v__measure_erosion_thick.py +45 -60
- niwrap_afni/afni/v__measure_in2out.py +50 -63
- niwrap_afni/afni/v__move_to_series_dirs.py +41 -57
- niwrap_afni/afni/v__no_ext.py +23 -46
- niwrap_afni/afni/v__no_pound.py +20 -43
- niwrap_afni/afni/v__noisy_skull_strip.py +29 -51
- niwrap_afni/afni/v__np.py +28 -50
- niwrap_afni/afni/v__parse_afni_name.py +24 -48
- niwrap_afni/afni/v__purify_1_d.py +26 -47
- niwrap_afni/afni/v__quiet_talkers.py +38 -54
- niwrap_afni/afni/v__radial_correlate.py +74 -79
- niwrap_afni/afni/v__rename_panga.py +43 -58
- niwrap_afni/afni/v__reorder.py +38 -56
- niwrap_afni/afni/v__retino_proc.py +130 -114
- niwrap_afni/afni/v__roi_corr_mat.py +42 -57
- niwrap_afni/afni/v__roi_decluster.py +40 -57
- niwrap_afni/afni/v__roi_modal_grow.py +39 -56
- niwrap_afni/afni/v__scale_volume.py +38 -55
- niwrap_afni/afni/v__script_check.py +25 -47
- niwrap_afni/afni/v__shift_volume.py +36 -55
- niwrap_afni/afni/v__show_dynamic_range.py +26 -50
- niwrap_afni/afni/v__simulate_motion.py +58 -67
- niwrap_afni/afni/v__skull_strip_touch_up.py +36 -55
- niwrap_afni/afni/v__snapshot_volreg.py +29 -50
- niwrap_afni/afni/v__spharm_examples.py +31 -49
- niwrap_afni/afni/v__sswarper.py +89 -89
- niwrap_afni/afni/v__statauxcode.py +20 -44
- niwrap_afni/afni/v__suma_acknowledge.py +40 -58
- niwrap_afni/afni/v__suma_align_to_experiment.py +75 -78
- niwrap_afni/afni/v__suma_fsvol_to_brik.py +24 -47
- niwrap_afni/afni/v__suma_make_spec_caret.py +35 -54
- niwrap_afni/afni/v__suma_make_spec_fs.py +60 -69
- niwrap_afni/afni/v__suma_make_spec_sf.py +28 -50
- niwrap_afni/afni/v__suma_renumber_fs.py +29 -53
- niwrap_afni/afni/v__suma_reprefixize_spec.py +28 -51
- niwrap_afni/afni/v__surf_smooth_heat_07_examples.py +20 -43
- niwrap_afni/afni/v__surf_to_vol_spackle.py +57 -68
- niwrap_afni/afni/v__t1scale.py +50 -61
- niwrap_afni/afni/v__thickness_master.py +28 -50
- niwrap_afni/afni/v__time_diff.py +22 -44
- niwrap_afni/afni/v__to_mni_awarp.py +22 -48
- niwrap_afni/afni/v__to_mni_qwarpar.py +23 -46
- niwrap_afni/afni/v__to_rai.py +22 -44
- niwrap_afni/afni/v__update_afni_binaries.py +73 -73
- niwrap_afni/afni/v__vol_center.py +23 -45
- niwrap_afni/afni/v__xyz_to_ijk.py +30 -50
- niwrap_afni/afni/vecwarp.py +41 -59
- niwrap_afni/afni/waver.py +80 -83
- niwrap_afni/afni/whirlgif.py +42 -60
- niwrap_afni/afni/xmat_tool_py.py +66 -70
- niwrap_afni-0.7.0.dist-info/METADATA +8 -0
- niwrap_afni-0.7.0.dist-info/RECORD +569 -0
- niwrap_afni-0.7.0.dist-info/WHEEL +4 -0
- niwrap_afni/afni/v__djunct_dwi_selector.py +0 -192
- niwrap_afni-0.6.3.dist-info/METADATA +0 -8
- niwrap_afni-0.6.3.dist-info/RECORD +0 -569
- niwrap_afni-0.6.3.dist-info/WHEEL +0 -4
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
ADJUNCT_APQC_TSNR_GENERAL_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="d0e88b706d5959e353f1480626f5f268697b57dd.boutiques",
|
|
10
10
|
name="adjunct_apqc_tsnr_general",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,7 +14,33 @@ ADJUNCT_APQC_TSNR_GENERAL_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
AdjunctApqcTsnrGeneralParameters = typing.TypedDict('AdjunctApqcTsnrGeneralParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/adjunct_apqc_tsnr_general"]],
|
|
18
|
+
"montgap": typing.NotRequired[str | None],
|
|
19
|
+
"montcolor": typing.NotRequired[str | None],
|
|
20
|
+
"montx": typing.NotRequired[str | None],
|
|
21
|
+
"monty": typing.NotRequired[str | None],
|
|
22
|
+
"opacity": typing.NotRequired[str | None],
|
|
23
|
+
"blowup": typing.NotRequired[str | None],
|
|
24
|
+
"save_ftype": typing.NotRequired[str | None],
|
|
25
|
+
"set_dicom_xyz": typing.NotRequired[list[str] | None],
|
|
26
|
+
"set_ijk": typing.NotRequired[list[str] | None],
|
|
27
|
+
"set_subbricks": typing.NotRequired[list[str] | None],
|
|
28
|
+
"olay_alpha": typing.NotRequired[str | None],
|
|
29
|
+
"olay_boxed": typing.NotRequired[str | None],
|
|
30
|
+
"thr_olay": typing.NotRequired[str | None],
|
|
31
|
+
"ulay_range_nz": typing.NotRequired[list[str] | None],
|
|
32
|
+
"ulay_range": typing.NotRequired[list[str] | None],
|
|
33
|
+
"delta_slices": typing.NotRequired[list[str] | None],
|
|
34
|
+
"olay_disc_hot_range": typing.NotRequired[list[str] | None],
|
|
35
|
+
"olay_cont_max": typing.NotRequired[str | None],
|
|
36
|
+
"cbar_cont": typing.NotRequired[str | None],
|
|
37
|
+
"no_cor": bool,
|
|
38
|
+
"no_sag": bool,
|
|
39
|
+
"no_axi": bool,
|
|
40
|
+
"echo": bool,
|
|
41
|
+
})
|
|
42
|
+
AdjunctApqcTsnrGeneralParametersTagged = typing.TypedDict('AdjunctApqcTsnrGeneralParametersTagged', {
|
|
43
|
+
"@type": typing.Literal["afni/adjunct_apqc_tsnr_general"],
|
|
18
44
|
"montgap": typing.NotRequired[str | None],
|
|
19
45
|
"montcolor": typing.NotRequired[str | None],
|
|
20
46
|
"montx": typing.NotRequired[str | None],
|
|
@@ -39,42 +65,11 @@ AdjunctApqcTsnrGeneralParameters = typing.TypedDict('AdjunctApqcTsnrGeneralParam
|
|
|
39
65
|
"no_axi": bool,
|
|
40
66
|
"echo": bool,
|
|
41
67
|
})
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
def dyn_cargs(
|
|
45
|
-
t: str,
|
|
46
|
-
) -> typing.Any:
|
|
47
|
-
"""
|
|
48
|
-
Get build cargs function by command type.
|
|
49
|
-
|
|
50
|
-
Args:
|
|
51
|
-
t: Command type.
|
|
52
|
-
Returns:
|
|
53
|
-
Build cargs function.
|
|
54
|
-
"""
|
|
55
|
-
return {
|
|
56
|
-
"adjunct_apqc_tsnr_general": adjunct_apqc_tsnr_general_cargs,
|
|
57
|
-
}.get(t)
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
def dyn_outputs(
|
|
61
|
-
t: str,
|
|
62
|
-
) -> typing.Any:
|
|
63
|
-
"""
|
|
64
|
-
Get build outputs function by command type.
|
|
65
|
-
|
|
66
|
-
Args:
|
|
67
|
-
t: Command type.
|
|
68
|
-
Returns:
|
|
69
|
-
Build outputs function.
|
|
70
|
-
"""
|
|
71
|
-
return {
|
|
72
|
-
}.get(t)
|
|
73
68
|
|
|
74
69
|
|
|
75
70
|
class AdjunctApqcTsnrGeneralOutputs(typing.NamedTuple):
|
|
76
71
|
"""
|
|
77
|
-
Output object returned when calling `
|
|
72
|
+
Output object returned when calling `AdjunctApqcTsnrGeneralParameters(...)`.
|
|
78
73
|
"""
|
|
79
74
|
root: OutputPathType
|
|
80
75
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -104,7 +99,7 @@ def adjunct_apqc_tsnr_general_params(
|
|
|
104
99
|
no_sag: bool = False,
|
|
105
100
|
no_axi: bool = False,
|
|
106
101
|
echo: bool = False,
|
|
107
|
-
) ->
|
|
102
|
+
) -> AdjunctApqcTsnrGeneralParametersTagged:
|
|
108
103
|
"""
|
|
109
104
|
Build parameters.
|
|
110
105
|
|
|
@@ -136,7 +131,7 @@ def adjunct_apqc_tsnr_general_params(
|
|
|
136
131
|
Parameter dictionary
|
|
137
132
|
"""
|
|
138
133
|
params = {
|
|
139
|
-
"
|
|
134
|
+
"@type": "afni/adjunct_apqc_tsnr_general",
|
|
140
135
|
"no_cor": no_cor,
|
|
141
136
|
"no_sag": no_sag,
|
|
142
137
|
"no_axi": no_axi,
|
|
@@ -198,108 +193,108 @@ def adjunct_apqc_tsnr_general_cargs(
|
|
|
198
193
|
"""
|
|
199
194
|
cargs = []
|
|
200
195
|
cargs.append("adjunct_apqc_tsnr_general")
|
|
201
|
-
if params.get("montgap") is not None:
|
|
196
|
+
if params.get("montgap", None) is not None:
|
|
202
197
|
cargs.extend([
|
|
203
198
|
"-montgap",
|
|
204
|
-
params.get("montgap")
|
|
199
|
+
params.get("montgap", None)
|
|
205
200
|
])
|
|
206
|
-
if params.get("montcolor") is not None:
|
|
201
|
+
if params.get("montcolor", None) is not None:
|
|
207
202
|
cargs.extend([
|
|
208
203
|
"-montcolor",
|
|
209
|
-
params.get("montcolor")
|
|
204
|
+
params.get("montcolor", None)
|
|
210
205
|
])
|
|
211
|
-
if params.get("montx") is not None:
|
|
206
|
+
if params.get("montx", None) is not None:
|
|
212
207
|
cargs.extend([
|
|
213
208
|
"-montx",
|
|
214
|
-
params.get("montx")
|
|
209
|
+
params.get("montx", None)
|
|
215
210
|
])
|
|
216
|
-
if params.get("monty") is not None:
|
|
211
|
+
if params.get("monty", None) is not None:
|
|
217
212
|
cargs.extend([
|
|
218
213
|
"-monty",
|
|
219
|
-
params.get("monty")
|
|
214
|
+
params.get("monty", None)
|
|
220
215
|
])
|
|
221
|
-
if params.get("opacity") is not None:
|
|
216
|
+
if params.get("opacity", None) is not None:
|
|
222
217
|
cargs.extend([
|
|
223
218
|
"-opacity",
|
|
224
|
-
params.get("opacity")
|
|
219
|
+
params.get("opacity", None)
|
|
225
220
|
])
|
|
226
|
-
if params.get("blowup") is not None:
|
|
221
|
+
if params.get("blowup", None) is not None:
|
|
227
222
|
cargs.extend([
|
|
228
223
|
"-blowup",
|
|
229
|
-
params.get("blowup")
|
|
224
|
+
params.get("blowup", None)
|
|
230
225
|
])
|
|
231
|
-
if params.get("save_ftype") is not None:
|
|
226
|
+
if params.get("save_ftype", None) is not None:
|
|
232
227
|
cargs.extend([
|
|
233
228
|
"-save_ftype",
|
|
234
|
-
params.get("save_ftype")
|
|
229
|
+
params.get("save_ftype", None)
|
|
235
230
|
])
|
|
236
|
-
if params.get("set_dicom_xyz") is not None:
|
|
231
|
+
if params.get("set_dicom_xyz", None) is not None:
|
|
237
232
|
cargs.extend([
|
|
238
233
|
"-set_dicom_xyz",
|
|
239
|
-
*params.get("set_dicom_xyz")
|
|
234
|
+
*params.get("set_dicom_xyz", None)
|
|
240
235
|
])
|
|
241
|
-
if params.get("set_ijk") is not None:
|
|
236
|
+
if params.get("set_ijk", None) is not None:
|
|
242
237
|
cargs.extend([
|
|
243
238
|
"-set_ijk",
|
|
244
|
-
*params.get("set_ijk")
|
|
239
|
+
*params.get("set_ijk", None)
|
|
245
240
|
])
|
|
246
|
-
if params.get("set_subbricks") is not None:
|
|
241
|
+
if params.get("set_subbricks", None) is not None:
|
|
247
242
|
cargs.extend([
|
|
248
243
|
"-set_subbricks",
|
|
249
|
-
*params.get("set_subbricks")
|
|
244
|
+
*params.get("set_subbricks", None)
|
|
250
245
|
])
|
|
251
|
-
if params.get("olay_alpha") is not None:
|
|
246
|
+
if params.get("olay_alpha", None) is not None:
|
|
252
247
|
cargs.extend([
|
|
253
248
|
"-olay_alpha",
|
|
254
|
-
params.get("olay_alpha")
|
|
249
|
+
params.get("olay_alpha", None)
|
|
255
250
|
])
|
|
256
|
-
if params.get("olay_boxed") is not None:
|
|
251
|
+
if params.get("olay_boxed", None) is not None:
|
|
257
252
|
cargs.extend([
|
|
258
253
|
"-olay_boxed",
|
|
259
|
-
params.get("olay_boxed")
|
|
254
|
+
params.get("olay_boxed", None)
|
|
260
255
|
])
|
|
261
|
-
if params.get("thr_olay") is not None:
|
|
256
|
+
if params.get("thr_olay", None) is not None:
|
|
262
257
|
cargs.extend([
|
|
263
258
|
"-thr_olay",
|
|
264
|
-
params.get("thr_olay")
|
|
259
|
+
params.get("thr_olay", None)
|
|
265
260
|
])
|
|
266
|
-
if params.get("ulay_range_nz") is not None:
|
|
261
|
+
if params.get("ulay_range_nz", None) is not None:
|
|
267
262
|
cargs.extend([
|
|
268
263
|
"-ulay_range_nz",
|
|
269
|
-
*params.get("ulay_range_nz")
|
|
264
|
+
*params.get("ulay_range_nz", None)
|
|
270
265
|
])
|
|
271
|
-
if params.get("ulay_range") is not None:
|
|
266
|
+
if params.get("ulay_range", None) is not None:
|
|
272
267
|
cargs.extend([
|
|
273
268
|
"-ulay_range",
|
|
274
|
-
*params.get("ulay_range")
|
|
269
|
+
*params.get("ulay_range", None)
|
|
275
270
|
])
|
|
276
|
-
if params.get("delta_slices") is not None:
|
|
271
|
+
if params.get("delta_slices", None) is not None:
|
|
277
272
|
cargs.extend([
|
|
278
273
|
"-delta_slices",
|
|
279
|
-
*params.get("delta_slices")
|
|
274
|
+
*params.get("delta_slices", None)
|
|
280
275
|
])
|
|
281
|
-
if params.get("olay_disc_hot_range") is not None:
|
|
276
|
+
if params.get("olay_disc_hot_range", None) is not None:
|
|
282
277
|
cargs.extend([
|
|
283
278
|
"-olay_disc_hot_range",
|
|
284
|
-
*params.get("olay_disc_hot_range")
|
|
279
|
+
*params.get("olay_disc_hot_range", None)
|
|
285
280
|
])
|
|
286
|
-
if params.get("olay_cont_max") is not None:
|
|
281
|
+
if params.get("olay_cont_max", None) is not None:
|
|
287
282
|
cargs.extend([
|
|
288
283
|
"-olay_cont_max",
|
|
289
|
-
params.get("olay_cont_max")
|
|
284
|
+
params.get("olay_cont_max", None)
|
|
290
285
|
])
|
|
291
|
-
if params.get("cbar_cont") is not None:
|
|
286
|
+
if params.get("cbar_cont", None) is not None:
|
|
292
287
|
cargs.extend([
|
|
293
288
|
"-cbar_cont",
|
|
294
|
-
params.get("cbar_cont")
|
|
289
|
+
params.get("cbar_cont", None)
|
|
295
290
|
])
|
|
296
|
-
if params.get("no_cor"):
|
|
291
|
+
if params.get("no_cor", False):
|
|
297
292
|
cargs.append("-no_cor")
|
|
298
|
-
if params.get("no_sag"):
|
|
293
|
+
if params.get("no_sag", False):
|
|
299
294
|
cargs.append("-no_sag")
|
|
300
|
-
if params.get("no_axi"):
|
|
295
|
+
if params.get("no_axi", False):
|
|
301
296
|
cargs.append("-no_axi")
|
|
302
|
-
if params.get("echo"):
|
|
297
|
+
if params.get("echo", False):
|
|
303
298
|
cargs.append("-echo")
|
|
304
299
|
return cargs
|
|
305
300
|
|
|
@@ -325,9 +320,11 @@ def adjunct_apqc_tsnr_general_outputs(
|
|
|
325
320
|
|
|
326
321
|
def adjunct_apqc_tsnr_general_execute(
|
|
327
322
|
params: AdjunctApqcTsnrGeneralParameters,
|
|
328
|
-
|
|
323
|
+
runner: Runner | None = None,
|
|
329
324
|
) -> AdjunctApqcTsnrGeneralOutputs:
|
|
330
325
|
"""
|
|
326
|
+
adjunct_apqc_tsnr_general
|
|
327
|
+
|
|
331
328
|
An adjunct program for making TSNR plots for APQC.
|
|
332
329
|
|
|
333
330
|
Author: AFNI Developers
|
|
@@ -336,10 +333,12 @@ def adjunct_apqc_tsnr_general_execute(
|
|
|
336
333
|
|
|
337
334
|
Args:
|
|
338
335
|
params: The parameters.
|
|
339
|
-
|
|
336
|
+
runner: Command runner.
|
|
340
337
|
Returns:
|
|
341
338
|
NamedTuple of outputs (described in `AdjunctApqcTsnrGeneralOutputs`).
|
|
342
339
|
"""
|
|
340
|
+
runner = runner or get_global_runner()
|
|
341
|
+
execution = runner.start_execution(ADJUNCT_APQC_TSNR_GENERAL_METADATA)
|
|
343
342
|
params = execution.params(params)
|
|
344
343
|
cargs = adjunct_apqc_tsnr_general_cargs(params, execution)
|
|
345
344
|
ret = adjunct_apqc_tsnr_general_outputs(params, execution)
|
|
@@ -374,6 +373,8 @@ def adjunct_apqc_tsnr_general(
|
|
|
374
373
|
runner: Runner | None = None,
|
|
375
374
|
) -> AdjunctApqcTsnrGeneralOutputs:
|
|
376
375
|
"""
|
|
376
|
+
adjunct_apqc_tsnr_general
|
|
377
|
+
|
|
377
378
|
An adjunct program for making TSNR plots for APQC.
|
|
378
379
|
|
|
379
380
|
Author: AFNI Developers
|
|
@@ -408,8 +409,6 @@ def adjunct_apqc_tsnr_general(
|
|
|
408
409
|
Returns:
|
|
409
410
|
NamedTuple of outputs (described in `AdjunctApqcTsnrGeneralOutputs`).
|
|
410
411
|
"""
|
|
411
|
-
runner = runner or get_global_runner()
|
|
412
|
-
execution = runner.start_execution(ADJUNCT_APQC_TSNR_GENERAL_METADATA)
|
|
413
412
|
params = adjunct_apqc_tsnr_general_params(
|
|
414
413
|
montgap=montgap,
|
|
415
414
|
montcolor=montcolor,
|
|
@@ -435,13 +434,13 @@ def adjunct_apqc_tsnr_general(
|
|
|
435
434
|
no_axi=no_axi,
|
|
436
435
|
echo=echo,
|
|
437
436
|
)
|
|
438
|
-
return adjunct_apqc_tsnr_general_execute(params,
|
|
437
|
+
return adjunct_apqc_tsnr_general_execute(params, runner)
|
|
439
438
|
|
|
440
439
|
|
|
441
440
|
__all__ = [
|
|
442
441
|
"ADJUNCT_APQC_TSNR_GENERAL_METADATA",
|
|
443
442
|
"AdjunctApqcTsnrGeneralOutputs",
|
|
444
|
-
"AdjunctApqcTsnrGeneralParameters",
|
|
445
443
|
"adjunct_apqc_tsnr_general",
|
|
444
|
+
"adjunct_apqc_tsnr_general_execute",
|
|
446
445
|
"adjunct_apqc_tsnr_general_params",
|
|
447
446
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
ADJUNCT_AW_TABLEIZE_ROI_INFO_PY_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="16877ea12882bb31c98f050fe7943b752aec5a92.boutiques",
|
|
10
10
|
name="adjunct_aw_tableize_roi_info.py",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,7 +14,16 @@ ADJUNCT_AW_TABLEIZE_ROI_INFO_PY_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
AdjunctAwTableizeRoiInfoPyParameters = typing.TypedDict('AdjunctAwTableizeRoiInfoPyParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/adjunct_aw_tableize_roi_info.py"]],
|
|
18
|
+
"output_file": str,
|
|
19
|
+
"warped_atlas": InputPathType,
|
|
20
|
+
"warped_mask": InputPathType,
|
|
21
|
+
"reference_atlas": InputPathType,
|
|
22
|
+
"reference_mask": InputPathType,
|
|
23
|
+
"modesmooth_value": float,
|
|
24
|
+
})
|
|
25
|
+
AdjunctAwTableizeRoiInfoPyParametersTagged = typing.TypedDict('AdjunctAwTableizeRoiInfoPyParametersTagged', {
|
|
26
|
+
"@type": typing.Literal["afni/adjunct_aw_tableize_roi_info.py"],
|
|
18
27
|
"output_file": str,
|
|
19
28
|
"warped_atlas": InputPathType,
|
|
20
29
|
"warped_mask": InputPathType,
|
|
@@ -22,43 +31,11 @@ AdjunctAwTableizeRoiInfoPyParameters = typing.TypedDict('AdjunctAwTableizeRoiInf
|
|
|
22
31
|
"reference_mask": InputPathType,
|
|
23
32
|
"modesmooth_value": float,
|
|
24
33
|
})
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
def dyn_cargs(
|
|
28
|
-
t: str,
|
|
29
|
-
) -> typing.Any:
|
|
30
|
-
"""
|
|
31
|
-
Get build cargs function by command type.
|
|
32
|
-
|
|
33
|
-
Args:
|
|
34
|
-
t: Command type.
|
|
35
|
-
Returns:
|
|
36
|
-
Build cargs function.
|
|
37
|
-
"""
|
|
38
|
-
return {
|
|
39
|
-
"adjunct_aw_tableize_roi_info.py": adjunct_aw_tableize_roi_info_py_cargs,
|
|
40
|
-
}.get(t)
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
def dyn_outputs(
|
|
44
|
-
t: str,
|
|
45
|
-
) -> typing.Any:
|
|
46
|
-
"""
|
|
47
|
-
Get build outputs function by command type.
|
|
48
|
-
|
|
49
|
-
Args:
|
|
50
|
-
t: Command type.
|
|
51
|
-
Returns:
|
|
52
|
-
Build outputs function.
|
|
53
|
-
"""
|
|
54
|
-
return {
|
|
55
|
-
"adjunct_aw_tableize_roi_info.py": adjunct_aw_tableize_roi_info_py_outputs,
|
|
56
|
-
}.get(t)
|
|
57
34
|
|
|
58
35
|
|
|
59
36
|
class AdjunctAwTableizeRoiInfoPyOutputs(typing.NamedTuple):
|
|
60
37
|
"""
|
|
61
|
-
Output object returned when calling `
|
|
38
|
+
Output object returned when calling `AdjunctAwTableizeRoiInfoPyParameters(...)`.
|
|
62
39
|
"""
|
|
63
40
|
root: OutputPathType
|
|
64
41
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -73,7 +50,7 @@ def adjunct_aw_tableize_roi_info_py_params(
|
|
|
73
50
|
reference_atlas: InputPathType,
|
|
74
51
|
reference_mask: InputPathType,
|
|
75
52
|
modesmooth_value: float,
|
|
76
|
-
) ->
|
|
53
|
+
) -> AdjunctAwTableizeRoiInfoPyParametersTagged:
|
|
77
54
|
"""
|
|
78
55
|
Build parameters.
|
|
79
56
|
|
|
@@ -91,7 +68,7 @@ def adjunct_aw_tableize_roi_info_py_params(
|
|
|
91
68
|
Parameter dictionary
|
|
92
69
|
"""
|
|
93
70
|
params = {
|
|
94
|
-
"
|
|
71
|
+
"@type": "afni/adjunct_aw_tableize_roi_info.py",
|
|
95
72
|
"output_file": output_file,
|
|
96
73
|
"warped_atlas": warped_atlas,
|
|
97
74
|
"warped_mask": warped_mask,
|
|
@@ -117,12 +94,12 @@ def adjunct_aw_tableize_roi_info_py_cargs(
|
|
|
117
94
|
"""
|
|
118
95
|
cargs = []
|
|
119
96
|
cargs.append("adjunct_aw_tableize_roi_info.py")
|
|
120
|
-
cargs.append(params.get("output_file"))
|
|
121
|
-
cargs.append(execution.input_file(params.get("warped_atlas")))
|
|
122
|
-
cargs.append(execution.input_file(params.get("warped_mask")))
|
|
123
|
-
cargs.append(execution.input_file(params.get("reference_atlas")))
|
|
124
|
-
cargs.append(execution.input_file(params.get("reference_mask")))
|
|
125
|
-
cargs.append(str(params.get("modesmooth_value")))
|
|
97
|
+
cargs.append(params.get("output_file", None))
|
|
98
|
+
cargs.append(execution.input_file(params.get("warped_atlas", None)))
|
|
99
|
+
cargs.append(execution.input_file(params.get("warped_mask", None)))
|
|
100
|
+
cargs.append(execution.input_file(params.get("reference_atlas", None)))
|
|
101
|
+
cargs.append(execution.input_file(params.get("reference_mask", None)))
|
|
102
|
+
cargs.append(str(params.get("modesmooth_value", None)))
|
|
126
103
|
return cargs
|
|
127
104
|
|
|
128
105
|
|
|
@@ -141,16 +118,18 @@ def adjunct_aw_tableize_roi_info_py_outputs(
|
|
|
141
118
|
"""
|
|
142
119
|
ret = AdjunctAwTableizeRoiInfoPyOutputs(
|
|
143
120
|
root=execution.output_file("."),
|
|
144
|
-
outfile=execution.output_file(params.get("output_file")),
|
|
121
|
+
outfile=execution.output_file(params.get("output_file", None)),
|
|
145
122
|
)
|
|
146
123
|
return ret
|
|
147
124
|
|
|
148
125
|
|
|
149
126
|
def adjunct_aw_tableize_roi_info_py_execute(
|
|
150
127
|
params: AdjunctAwTableizeRoiInfoPyParameters,
|
|
151
|
-
|
|
128
|
+
runner: Runner | None = None,
|
|
152
129
|
) -> AdjunctAwTableizeRoiInfoPyOutputs:
|
|
153
130
|
"""
|
|
131
|
+
adjunct_aw_tableize_roi_info.py
|
|
132
|
+
|
|
154
133
|
A simple helper function for the fat_proc scripts that generates a text file
|
|
155
134
|
containing ROI count/size information based on provided atlases and masks.
|
|
156
135
|
|
|
@@ -160,10 +139,12 @@ def adjunct_aw_tableize_roi_info_py_execute(
|
|
|
160
139
|
|
|
161
140
|
Args:
|
|
162
141
|
params: The parameters.
|
|
163
|
-
|
|
142
|
+
runner: Command runner.
|
|
164
143
|
Returns:
|
|
165
144
|
NamedTuple of outputs (described in `AdjunctAwTableizeRoiInfoPyOutputs`).
|
|
166
145
|
"""
|
|
146
|
+
runner = runner or get_global_runner()
|
|
147
|
+
execution = runner.start_execution(ADJUNCT_AW_TABLEIZE_ROI_INFO_PY_METADATA)
|
|
167
148
|
params = execution.params(params)
|
|
168
149
|
cargs = adjunct_aw_tableize_roi_info_py_cargs(params, execution)
|
|
169
150
|
ret = adjunct_aw_tableize_roi_info_py_outputs(params, execution)
|
|
@@ -181,6 +162,8 @@ def adjunct_aw_tableize_roi_info_py(
|
|
|
181
162
|
runner: Runner | None = None,
|
|
182
163
|
) -> AdjunctAwTableizeRoiInfoPyOutputs:
|
|
183
164
|
"""
|
|
165
|
+
adjunct_aw_tableize_roi_info.py
|
|
166
|
+
|
|
184
167
|
A simple helper function for the fat_proc scripts that generates a text file
|
|
185
168
|
containing ROI count/size information based on provided atlases and masks.
|
|
186
169
|
|
|
@@ -202,8 +185,6 @@ def adjunct_aw_tableize_roi_info_py(
|
|
|
202
185
|
Returns:
|
|
203
186
|
NamedTuple of outputs (described in `AdjunctAwTableizeRoiInfoPyOutputs`).
|
|
204
187
|
"""
|
|
205
|
-
runner = runner or get_global_runner()
|
|
206
|
-
execution = runner.start_execution(ADJUNCT_AW_TABLEIZE_ROI_INFO_PY_METADATA)
|
|
207
188
|
params = adjunct_aw_tableize_roi_info_py_params(
|
|
208
189
|
output_file=output_file,
|
|
209
190
|
warped_atlas=warped_atlas,
|
|
@@ -212,13 +193,13 @@ def adjunct_aw_tableize_roi_info_py(
|
|
|
212
193
|
reference_mask=reference_mask,
|
|
213
194
|
modesmooth_value=modesmooth_value,
|
|
214
195
|
)
|
|
215
|
-
return adjunct_aw_tableize_roi_info_py_execute(params,
|
|
196
|
+
return adjunct_aw_tableize_roi_info_py_execute(params, runner)
|
|
216
197
|
|
|
217
198
|
|
|
218
199
|
__all__ = [
|
|
219
200
|
"ADJUNCT_AW_TABLEIZE_ROI_INFO_PY_METADATA",
|
|
220
201
|
"AdjunctAwTableizeRoiInfoPyOutputs",
|
|
221
|
-
"AdjunctAwTableizeRoiInfoPyParameters",
|
|
222
202
|
"adjunct_aw_tableize_roi_info_py",
|
|
203
|
+
"adjunct_aw_tableize_roi_info_py_execute",
|
|
223
204
|
"adjunct_aw_tableize_roi_info_py_params",
|
|
224
205
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
ADJUNCT_CALC_MONT_DIMS_PY_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="65740c5e7b4735fb06713201c897e753dba3424a.boutiques",
|
|
10
10
|
name="adjunct_calc_mont_dims.py",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,45 +14,18 @@ ADJUNCT_CALC_MONT_DIMS_PY_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
AdjunctCalcMontDimsPyParameters = typing.TypedDict('AdjunctCalcMontDimsPyParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/adjunct_calc_mont_dims.py"]],
|
|
18
|
+
"help": bool,
|
|
19
|
+
})
|
|
20
|
+
AdjunctCalcMontDimsPyParametersTagged = typing.TypedDict('AdjunctCalcMontDimsPyParametersTagged', {
|
|
21
|
+
"@type": typing.Literal["afni/adjunct_calc_mont_dims.py"],
|
|
18
22
|
"help": bool,
|
|
19
23
|
})
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
def dyn_cargs(
|
|
23
|
-
t: str,
|
|
24
|
-
) -> typing.Any:
|
|
25
|
-
"""
|
|
26
|
-
Get build cargs function by command type.
|
|
27
|
-
|
|
28
|
-
Args:
|
|
29
|
-
t: Command type.
|
|
30
|
-
Returns:
|
|
31
|
-
Build cargs function.
|
|
32
|
-
"""
|
|
33
|
-
return {
|
|
34
|
-
"adjunct_calc_mont_dims.py": adjunct_calc_mont_dims_py_cargs,
|
|
35
|
-
}.get(t)
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
def dyn_outputs(
|
|
39
|
-
t: str,
|
|
40
|
-
) -> typing.Any:
|
|
41
|
-
"""
|
|
42
|
-
Get build outputs function by command type.
|
|
43
|
-
|
|
44
|
-
Args:
|
|
45
|
-
t: Command type.
|
|
46
|
-
Returns:
|
|
47
|
-
Build outputs function.
|
|
48
|
-
"""
|
|
49
|
-
return {
|
|
50
|
-
}.get(t)
|
|
51
24
|
|
|
52
25
|
|
|
53
26
|
class AdjunctCalcMontDimsPyOutputs(typing.NamedTuple):
|
|
54
27
|
"""
|
|
55
|
-
Output object returned when calling `
|
|
28
|
+
Output object returned when calling `AdjunctCalcMontDimsPyParameters(...)`.
|
|
56
29
|
"""
|
|
57
30
|
root: OutputPathType
|
|
58
31
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -60,7 +33,7 @@ class AdjunctCalcMontDimsPyOutputs(typing.NamedTuple):
|
|
|
60
33
|
|
|
61
34
|
def adjunct_calc_mont_dims_py_params(
|
|
62
35
|
help_: bool = False,
|
|
63
|
-
) ->
|
|
36
|
+
) -> AdjunctCalcMontDimsPyParametersTagged:
|
|
64
37
|
"""
|
|
65
38
|
Build parameters.
|
|
66
39
|
|
|
@@ -70,7 +43,7 @@ def adjunct_calc_mont_dims_py_params(
|
|
|
70
43
|
Parameter dictionary
|
|
71
44
|
"""
|
|
72
45
|
params = {
|
|
73
|
-
"
|
|
46
|
+
"@type": "afni/adjunct_calc_mont_dims.py",
|
|
74
47
|
"help": help_,
|
|
75
48
|
}
|
|
76
49
|
return params
|
|
@@ -91,7 +64,7 @@ def adjunct_calc_mont_dims_py_cargs(
|
|
|
91
64
|
"""
|
|
92
65
|
cargs = []
|
|
93
66
|
cargs.append("adjunct_calc_mont_dims.py")
|
|
94
|
-
if params.get("help"):
|
|
67
|
+
if params.get("help", False):
|
|
95
68
|
cargs.append("-help")
|
|
96
69
|
return cargs
|
|
97
70
|
|
|
@@ -117,9 +90,11 @@ def adjunct_calc_mont_dims_py_outputs(
|
|
|
117
90
|
|
|
118
91
|
def adjunct_calc_mont_dims_py_execute(
|
|
119
92
|
params: AdjunctCalcMontDimsPyParameters,
|
|
120
|
-
|
|
93
|
+
runner: Runner | None = None,
|
|
121
94
|
) -> AdjunctCalcMontDimsPyOutputs:
|
|
122
95
|
"""
|
|
96
|
+
adjunct_calc_mont_dims.py
|
|
97
|
+
|
|
123
98
|
A helper function for the fat_proc* scripts.
|
|
124
99
|
|
|
125
100
|
Author: AFNI Developers
|
|
@@ -128,10 +103,12 @@ def adjunct_calc_mont_dims_py_execute(
|
|
|
128
103
|
|
|
129
104
|
Args:
|
|
130
105
|
params: The parameters.
|
|
131
|
-
|
|
106
|
+
runner: Command runner.
|
|
132
107
|
Returns:
|
|
133
108
|
NamedTuple of outputs (described in `AdjunctCalcMontDimsPyOutputs`).
|
|
134
109
|
"""
|
|
110
|
+
runner = runner or get_global_runner()
|
|
111
|
+
execution = runner.start_execution(ADJUNCT_CALC_MONT_DIMS_PY_METADATA)
|
|
135
112
|
params = execution.params(params)
|
|
136
113
|
cargs = adjunct_calc_mont_dims_py_cargs(params, execution)
|
|
137
114
|
ret = adjunct_calc_mont_dims_py_outputs(params, execution)
|
|
@@ -144,6 +121,8 @@ def adjunct_calc_mont_dims_py(
|
|
|
144
121
|
runner: Runner | None = None,
|
|
145
122
|
) -> AdjunctCalcMontDimsPyOutputs:
|
|
146
123
|
"""
|
|
124
|
+
adjunct_calc_mont_dims.py
|
|
125
|
+
|
|
147
126
|
A helper function for the fat_proc* scripts.
|
|
148
127
|
|
|
149
128
|
Author: AFNI Developers
|
|
@@ -156,18 +135,16 @@ def adjunct_calc_mont_dims_py(
|
|
|
156
135
|
Returns:
|
|
157
136
|
NamedTuple of outputs (described in `AdjunctCalcMontDimsPyOutputs`).
|
|
158
137
|
"""
|
|
159
|
-
runner = runner or get_global_runner()
|
|
160
|
-
execution = runner.start_execution(ADJUNCT_CALC_MONT_DIMS_PY_METADATA)
|
|
161
138
|
params = adjunct_calc_mont_dims_py_params(
|
|
162
139
|
help_=help_,
|
|
163
140
|
)
|
|
164
|
-
return adjunct_calc_mont_dims_py_execute(params,
|
|
141
|
+
return adjunct_calc_mont_dims_py_execute(params, runner)
|
|
165
142
|
|
|
166
143
|
|
|
167
144
|
__all__ = [
|
|
168
145
|
"ADJUNCT_CALC_MONT_DIMS_PY_METADATA",
|
|
169
146
|
"AdjunctCalcMontDimsPyOutputs",
|
|
170
|
-
"AdjunctCalcMontDimsPyParameters",
|
|
171
147
|
"adjunct_calc_mont_dims_py",
|
|
148
|
+
"adjunct_calc_mont_dims_py_execute",
|
|
172
149
|
"adjunct_calc_mont_dims_py_params",
|
|
173
150
|
]
|