niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__diff_files.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DIFF_FILES_METADATA = Metadata(
-    id="b2c90d856d96607ae349b21ec8912aa4efbe8df2.boutiques",
+    id="e7259d1dadcf2b0d7ace8162af89fc1f0ae7d77f.boutiques",
     name="@diff.files",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,21 @@ V__DIFF_FILES_METADATA = Metadata(
 
 
 VDiffFilesParameters = typing.TypedDict('VDiffFilesParameters', {
-    "__STYXTYPE__": typing.Literal["@diff.files"],
+    "@type": typing.NotRequired[typing.Literal["afni/@diff.files"]],
+    "files": list[str],
+    "old_dir": str,
+    "diff_opts": typing.NotRequired[str | None],
+    "diff_prog": typing.NotRequired[str | None],
+    "ignore_missing": bool,
+    "longlist": bool,
+    "save": bool,
+    "show": bool,
+    "xxdiff": bool,
+    "X_flag": bool,
+    "verbosity": typing.NotRequired[float | None],
+})
+VDiffFilesParametersTagged = typing.TypedDict('VDiffFilesParametersTagged', {
+    "@type": typing.Literal["afni/@diff.files"],
     "files": list[str],
     "old_dir": str,
     "diff_opts": typing.NotRequired[str | None],
@@ -27,42 +41,11 @@ VDiffFilesParameters = typing.TypedDict('VDiffFilesParameters', {
     "X_flag": bool,
     "verbosity": typing.NotRequired[float | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@diff.files": v__diff_files_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDiffFilesOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__diff_files(...)`.
+    Output object returned when calling `VDiffFilesParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -80,7 +63,7 @@ def v__diff_files_params(
     xxdiff: bool = False,
     x_flag: bool = False,
     verbosity: float | None = None,
-) -> VDiffFilesParameters:
+) -> VDiffFilesParametersTagged:
     """
     Build parameters.
     
@@ -100,7 +83,7 @@ def v__diff_files_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@diff.files",
+        "@type": "afni/@diff.files",
         "files": files,
         "old_dir": old_dir,
         "ignore_missing": ignore_missing,
@@ -134,34 +117,34 @@ def v__diff_files_cargs(
     """
     cargs = []
     cargs.append("@diff.files")
-    cargs.extend(params.get("files"))
-    cargs.append(params.get("old_dir"))
-    if params.get("diff_opts") is not None:
+    cargs.extend(params.get("files", None))
+    cargs.append(params.get("old_dir", None))
+    if params.get("diff_opts", None) is not None:
         cargs.extend([
             "-diff_opts",
-            params.get("diff_opts")
+            params.get("diff_opts", None)
         ])
-    if params.get("diff_prog") is not None:
+    if params.get("diff_prog", None) is not None:
         cargs.extend([
             "-diff_prog",
-            params.get("diff_prog")
+            params.get("diff_prog", None)
         ])
-    if params.get("ignore_missing"):
+    if params.get("ignore_missing", False):
         cargs.append("-ignore_missing")
-    if params.get("longlist"):
+    if params.get("longlist", False):
         cargs.append("-longlist")
-    if params.get("save"):
+    if params.get("save", False):
         cargs.append("-save")
-    if params.get("show"):
+    if params.get("show", False):
         cargs.append("-show")
-    if params.get("xxdiff"):
+    if params.get("xxdiff", False):
         cargs.append("-xxdiff")
-    if params.get("X_flag"):
+    if params.get("X_flag", False):
         cargs.append("-X")
-    if params.get("verbosity") is not None:
+    if params.get("verbosity", None) is not None:
         cargs.extend([
             "-verb",
-            str(params.get("verbosity"))
+            str(params.get("verbosity", None))
         ])
     return cargs
 
@@ -187,10 +170,13 @@ def v__diff_files_outputs(
 
 def v__diff_files_execute(
     params: VDiffFilesParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDiffFilesOutputs:
     """
-    Show file differences (between specified files and those in another directory).
+    @diff.files
+    
+    Show file differences (between specified files and those in another
+    directory).
     
     Author: AFNI Developers
     
@@ -198,10 +184,12 @@ def v__diff_files_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDiffFilesOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DIFF_FILES_METADATA)
     params = execution.params(params)
     cargs = v__diff_files_cargs(params, execution)
     ret = v__diff_files_outputs(params, execution)
@@ -224,7 +212,10 @@ def v__diff_files(
     runner: Runner | None = None,
 ) -> VDiffFilesOutputs:
     """
-    Show file differences (between specified files and those in another directory).
+    @diff.files
+    
+    Show file differences (between specified files and those in another
+    directory).
     
     Author: AFNI Developers
     
@@ -246,8 +237,6 @@ def v__diff_files(
     Returns:
         NamedTuple of outputs (described in `VDiffFilesOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DIFF_FILES_METADATA)
     params = v__diff_files_params(
         files=files,
         old_dir=old_dir,
@@ -261,13 +250,13 @@ def v__diff_files(
         x_flag=x_flag,
         verbosity=verbosity,
     )
-    return v__diff_files_execute(params, execution)
+    return v__diff_files_execute(params, runner)
 
 
 __all__ = [
     "VDiffFilesOutputs",
-    "VDiffFilesParameters",
     "V__DIFF_FILES_METADATA",
     "v__diff_files",
+    "v__diff_files_execute",
     "v__diff_files_params",
 ]

niwrap_afni/afni/v__diff_tree.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DIFF_TREE_METADATA = Metadata(
-    id="c1b88ca0b49c6f0c6d5e49fb3192c34dfd29e2ba.boutiques",
+    id="833d86fc8fc3ceaae4b139facefbe8510757256e.boutiques",
     name="@diff.tree",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,28 @@ V__DIFF_TREE_METADATA = Metadata(
 
 
 VDiffTreeParameters = typing.TypedDict('VDiffTreeParameters', {
-    "__STYXTYPE__": typing.Literal["@diff.tree"],
+    "@type": typing.NotRequired[typing.Literal["afni/@diff.tree"]],
+    "new_dir": str,
+    "old_dir": str,
+    "diff_opts": typing.NotRequired[str | None],
+    "ignore_append": typing.NotRequired[str | None],
+    "ia": typing.NotRequired[str | None],
+    "ignore_list": typing.NotRequired[str | None],
+    "il": typing.NotRequired[str | None],
+    "ignore_missing": bool,
+    "no_diffs": bool,
+    "quiet": bool,
+    "save": bool,
+    "show": bool,
+    "show_list_comp": bool,
+    "skip_data": bool,
+    "verb": typing.NotRequired[str | None],
+    "diff_prog": typing.NotRequired[str | None],
+    "xxdiff": bool,
+    "X_option": bool,
+})
+VDiffTreeParametersTagged = typing.TypedDict('VDiffTreeParametersTagged', {
+    "@type": typing.Literal["afni/@diff.tree"],
     "new_dir": str,
     "old_dir": str,
     "diff_opts": typing.NotRequired[str | None],
@@ -34,42 +55,11 @@ VDiffTreeParameters = typing.TypedDict('VDiffTreeParameters', {
     "xxdiff": bool,
     "X_option": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@diff.tree": v__diff_tree_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDiffTreeOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__diff_tree(...)`.
+    Output object returned when calling `VDiffTreeParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -94,7 +84,7 @@ def v__diff_tree_params(
     diff_prog: str | None = None,
     xxdiff: bool = False,
     x_option: bool = False,
-) -> VDiffTreeParameters:
+) -> VDiffTreeParametersTagged:
     """
     Build parameters.
     
@@ -124,7 +114,7 @@ def v__diff_tree_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@diff.tree",
+        "@type": "afni/@diff.tree",
         "new_dir": new_dir,
         "old_dir": old_dir,
         "ignore_missing": ignore_missing,
@@ -169,60 +159,60 @@ def v__diff_tree_cargs(
     """
     cargs = []
     cargs.append("@diff.tree")
-    cargs.append(params.get("new_dir"))
-    cargs.append(params.get("old_dir"))
-    if params.get("diff_opts") is not None:
+    cargs.append(params.get("new_dir", None))
+    cargs.append(params.get("old_dir", None))
+    if params.get("diff_opts", None) is not None:
         cargs.extend([
             "-diff_opts",
-            params.get("diff_opts")
+            params.get("diff_opts", None)
         ])
-    if params.get("ignore_append") is not None:
+    if params.get("ignore_append", None) is not None:
         cargs.extend([
             "-ignore_append",
-            params.get("ignore_append")
+            params.get("ignore_append", None)
         ])
-    if params.get("ia") is not None:
+    if params.get("ia", None) is not None:
         cargs.extend([
             "-ia",
-            params.get("ia")
+            params.get("ia", None)
         ])
-    if params.get("ignore_list") is not None:
+    if params.get("ignore_list", None) is not None:
         cargs.extend([
             "-ignore_list",
-            params.get("ignore_list")
+            params.get("ignore_list", None)
         ])
-    if params.get("il") is not None:
+    if params.get("il", None) is not None:
         cargs.extend([
             "-il",
-            params.get("il")
+            params.get("il", None)
         ])
-    if params.get("ignore_missing"):
+    if params.get("ignore_missing", False):
         cargs.append("-ignore_missing")
-    if params.get("no_diffs"):
+    if params.get("no_diffs", False):
         cargs.append("-no_diffs")
-    if params.get("quiet"):
+    if params.get("quiet", False):
         cargs.append("-quiet")
-    if params.get("save"):
+    if params.get("save", False):
         cargs.append("-save")
-    if params.get("show"):
+    if params.get("show", False):
         cargs.append("-show")
-    if params.get("show_list_comp"):
+    if params.get("show_list_comp", False):
         cargs.append("-show_list_comp")
-    if params.get("skip_data"):
+    if params.get("skip_data", False):
         cargs.append("-skip_data")
-    if params.get("verb") is not None:
+    if params.get("verb", None) is not None:
         cargs.extend([
             "-verb",
-            params.get("verb")
+            params.get("verb", None)
         ])
-    if params.get("diff_prog") is not None:
+    if params.get("diff_prog", None) is not None:
         cargs.extend([
             "-diff_prog",
-            params.get("diff_prog")
+            params.get("diff_prog", None)
         ])
-    if params.get("xxdiff"):
+    if params.get("xxdiff", False):
         cargs.append("-xxdiff")
-    if params.get("X_option"):
+    if params.get("X_option", False):
         cargs.append("-X")
     return cargs
 
@@ -248,9 +238,11 @@ def v__diff_tree_outputs(
 
 def v__diff_tree_execute(
     params: VDiffTreeParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDiffTreeOutputs:
     """
+    @diff.tree
+    
     Show file differences between 2 directories.
     
     Author: AFNI Developers
@@ -259,10 +251,12 @@ def v__diff_tree_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDiffTreeOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DIFF_TREE_METADATA)
     params = execution.params(params)
     cargs = v__diff_tree_cargs(params, execution)
     ret = v__diff_tree_outputs(params, execution)
@@ -292,6 +286,8 @@ def v__diff_tree(
     runner: Runner | None = None,
 ) -> VDiffTreeOutputs:
     """
+    @diff.tree
+    
     Show file differences between 2 directories.
     
     Author: AFNI Developers
@@ -324,8 +320,6 @@ def v__diff_tree(
     Returns:
         NamedTuple of outputs (described in `VDiffTreeOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DIFF_TREE_METADATA)
     params = v__diff_tree_params(
         new_dir=new_dir,
         old_dir=old_dir,
@@ -346,13 +340,13 @@ def v__diff_tree(
         xxdiff=xxdiff,
         x_option=x_option,
     )
-    return v__diff_tree_execute(params, execution)
+    return v__diff_tree_execute(params, runner)
 
 
 __all__ = [
     "VDiffTreeOutputs",
-    "VDiffTreeParameters",
     "V__DIFF_TREE_METADATA",
     "v__diff_tree",
+    "v__diff_tree_execute",
     "v__diff_tree_params",
 ]

niwrap_afni/afni/v__djunct_4d_imager.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DJUNCT_4D_IMAGER_METADATA = Metadata(
-    id="20ff42d780ed2dcd57ab1aca215000480c328e59.boutiques",
+    id="08addc99f8ae636c5a8b49cdb8cbebf6b46e71ae.boutiques",
     name="@djunct_4d_imager",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,49 +14,24 @@ V__DJUNCT_4D_IMAGER_METADATA = Metadata(
 
 
 VDjunct4dImagerParameters = typing.TypedDict('VDjunct4dImagerParameters', {
-    "__STYXTYPE__": typing.Literal["@djunct_4d_imager"],
+    "@type": typing.NotRequired[typing.Literal["afni/@djunct_4d_imager"]],
+    "inset": InputPathType,
+    "prefix": str,
+    "do_movie": typing.NotRequired[typing.Literal["MPEG", "AGIF"] | None],
+    "no_clean": bool,
+})
+VDjunct4dImagerParametersTagged = typing.TypedDict('VDjunct4dImagerParametersTagged', {
+    "@type": typing.Literal["afni/@djunct_4d_imager"],
     "inset": InputPathType,
     "prefix": str,
     "do_movie": typing.NotRequired[typing.Literal["MPEG", "AGIF"] | None],
     "no_clean": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@djunct_4d_imager": v__djunct_4d_imager_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@djunct_4d_imager": v__djunct_4d_imager_outputs,
-    }.get(t)
 
 
 class VDjunct4dImagerOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__djunct_4d_imager(...)`.
+    Output object returned when calling `VDjunct4dImagerParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -81,7 +56,7 @@ def v__djunct_4d_imager_params(
     prefix: str,
     do_movie: typing.Literal["MPEG", "AGIF"] | None = None,
     no_clean: bool = False,
-) -> VDjunct4dImagerParameters:
+) -> VDjunct4dImagerParametersTagged:
     """
     Build parameters.
     
@@ -94,7 +69,7 @@ def v__djunct_4d_imager_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@djunct_4d_imager",
+        "@type": "afni/@djunct_4d_imager",
         "inset": inset,
         "prefix": prefix,
         "no_clean": no_clean,
@@ -119,14 +94,14 @@ def v__djunct_4d_imager_cargs(
     """
     cargs = []
     cargs.append("@djunct_4d_imager")
-    cargs.append(execution.input_file(params.get("inset")))
-    cargs.append(params.get("prefix"))
-    if params.get("do_movie") is not None:
+    cargs.append(execution.input_file(params.get("inset", None)))
+    cargs.append(params.get("prefix", None))
+    if params.get("do_movie", None) is not None:
         cargs.extend([
             "-do_movie",
-            params.get("do_movie")
+            params.get("do_movie", None)
         ])
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
     return cargs
 
@@ -146,23 +121,25 @@ def v__djunct_4d_imager_outputs(
     """
     ret = VDjunct4dImagerOutputs(
         root=execution.output_file("."),
-        onescl_png=execution.output_file(params.get("prefix") + "_onescl.png"),
-        sepscl_png=execution.output_file(params.get("prefix") + "_sepscl.png"),
-        onescl_mpeg=execution.output_file(params.get("prefix") + "_onescl.mpg"),
-        sepscl_mpeg=execution.output_file(params.get("prefix") + "_sepscl.mpg"),
-        onescl_gif=execution.output_file(params.get("prefix") + "_onescl.gif"),
-        sepscl_gif=execution.output_file(params.get("prefix") + "_sepscl.gif"),
+        onescl_png=execution.output_file(params.get("prefix", None) + "_onescl.png"),
+        sepscl_png=execution.output_file(params.get("prefix", None) + "_sepscl.png"),
+        onescl_mpeg=execution.output_file(params.get("prefix", None) + "_onescl.mpg"),
+        sepscl_mpeg=execution.output_file(params.get("prefix", None) + "_sepscl.mpg"),
+        onescl_gif=execution.output_file(params.get("prefix", None) + "_onescl.gif"),
+        sepscl_gif=execution.output_file(params.get("prefix", None) + "_sepscl.gif"),
     )
     return ret
 
 
 def v__djunct_4d_imager_execute(
     params: VDjunct4dImagerParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDjunct4dImagerOutputs:
     """
-    The program is useful for viewing the same slice across the 'time' dimension of
-    a 4D data set.
+    @djunct_4d_imager
+    
+    The program is useful for viewing the same slice across the 'time' dimension
+    of a 4D data set.
     
     Author: AFNI Developers
     
@@ -170,10 +147,12 @@ def v__djunct_4d_imager_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDjunct4dImagerOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DJUNCT_4D_IMAGER_METADATA)
     params = execution.params(params)
     cargs = v__djunct_4d_imager_cargs(params, execution)
     ret = v__djunct_4d_imager_outputs(params, execution)
@@ -189,8 +168,10 @@ def v__djunct_4d_imager(
     runner: Runner | None = None,
 ) -> VDjunct4dImagerOutputs:
     """
-    The program is useful for viewing the same slice across the 'time' dimension of
-    a 4D data set.
+    @djunct_4d_imager
+    
+    The program is useful for viewing the same slice across the 'time' dimension
+    of a 4D data set.
     
     Author: AFNI Developers
     
@@ -205,21 +186,19 @@ def v__djunct_4d_imager(
     Returns:
         NamedTuple of outputs (described in `VDjunct4dImagerOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DJUNCT_4D_IMAGER_METADATA)
     params = v__djunct_4d_imager_params(
         inset=inset,
         prefix=prefix,
         do_movie=do_movie,
         no_clean=no_clean,
     )
-    return v__djunct_4d_imager_execute(params, execution)
+    return v__djunct_4d_imager_execute(params, runner)
 
 
 __all__ = [
     "VDjunct4dImagerOutputs",
-    "VDjunct4dImagerParameters",
     "V__DJUNCT_4D_IMAGER_METADATA",
     "v__djunct_4d_imager",
+    "v__djunct_4d_imager_execute",
     "v__djunct_4d_imager_params",
 ]