niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/adjunct_combine_str_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 ADJUNCT_COMBINE_STR_PY_METADATA = Metadata(
-    id="000e1eed64bccb1d991895bd288ca5f9ee91719d.boutiques",
+    id="c40413f9850076201efeb4cb725687d44a1fda1d.boutiques",
     name="adjunct_combine_str.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,48 +14,22 @@ ADJUNCT_COMBINE_STR_PY_METADATA = Metadata(
 
 
 AdjunctCombineStrPyParameters = typing.TypedDict('AdjunctCombineStrPyParameters', {
-    "__STYXTYPE__": typing.Literal["adjunct_combine_str.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/adjunct_combine_str.py"]],
+    "output_file": str,
+    "upper_index": float,
+    "string_selectors": list[str],
+})
+AdjunctCombineStrPyParametersTagged = typing.TypedDict('AdjunctCombineStrPyParametersTagged', {
+    "@type": typing.Literal["afni/adjunct_combine_str.py"],
     "output_file": str,
     "upper_index": float,
     "string_selectors": list[str],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "adjunct_combine_str.py": adjunct_combine_str_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "adjunct_combine_str.py": adjunct_combine_str_py_outputs,
-    }.get(t)
 
 
 class AdjunctCombineStrPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `adjunct_combine_str_py(...)`.
+    Output object returned when calling `AdjunctCombineStrPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -67,7 +41,7 @@ def adjunct_combine_str_py_params(
     output_file: str,
     upper_index: float,
     string_selectors: list[str],
-) -> AdjunctCombineStrPyParameters:
+) -> AdjunctCombineStrPyParametersTagged:
     """
     Build parameters.
     
@@ -81,7 +55,7 @@ def adjunct_combine_str_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "adjunct_combine_str.py",
+        "@type": "afni/adjunct_combine_str.py",
         "output_file": output_file,
         "upper_index": upper_index,
         "string_selectors": string_selectors,
@@ -104,9 +78,9 @@ def adjunct_combine_str_py_cargs(
     """
     cargs = []
     cargs.append("adjunct_combine_str.py")
-    cargs.append(params.get("output_file"))
-    cargs.append(str(params.get("upper_index")))
-    cargs.extend(params.get("string_selectors"))
+    cargs.append(params.get("output_file", None))
+    cargs.append(str(params.get("upper_index", None)))
+    cargs.extend(params.get("string_selectors", None))
     return cargs
 
 
@@ -125,18 +99,20 @@ def adjunct_combine_str_py_outputs(
     """
     ret = AdjunctCombineStrPyOutputs(
         root=execution.output_file("."),
-        output_selector_file=execution.output_file(params.get("output_file")),
+        output_selector_file=execution.output_file(params.get("output_file", None)),
     )
     return ret
 
 
 def adjunct_combine_str_py_execute(
     params: AdjunctCombineStrPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AdjunctCombineStrPyOutputs:
     """
-    A simple helper function for fat_proc* scripts that processes string selectors
-    and outputs a new string selector.
+    adjunct_combine_str.py
+    
+    A simple helper function for fat_proc* scripts that processes string
+    selectors and outputs a new string selector.
     
     Author: AFNI Developers
     
@@ -144,10 +120,12 @@ def adjunct_combine_str_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AdjunctCombineStrPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(ADJUNCT_COMBINE_STR_PY_METADATA)
     params = execution.params(params)
     cargs = adjunct_combine_str_py_cargs(params, execution)
     ret = adjunct_combine_str_py_outputs(params, execution)
@@ -162,8 +140,10 @@ def adjunct_combine_str_py(
     runner: Runner | None = None,
 ) -> AdjunctCombineStrPyOutputs:
     """
-    A simple helper function for fat_proc* scripts that processes string selectors
-    and outputs a new string selector.
+    adjunct_combine_str.py
+    
+    A simple helper function for fat_proc* scripts that processes string
+    selectors and outputs a new string selector.
     
     Author: AFNI Developers
     
@@ -179,20 +159,18 @@ def adjunct_combine_str_py(
     Returns:
         NamedTuple of outputs (described in `AdjunctCombineStrPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(ADJUNCT_COMBINE_STR_PY_METADATA)
     params = adjunct_combine_str_py_params(
         output_file=output_file,
         upper_index=upper_index,
         string_selectors=string_selectors,
     )
-    return adjunct_combine_str_py_execute(params, execution)
+    return adjunct_combine_str_py_execute(params, runner)
 
 
 __all__ = [
     "ADJUNCT_COMBINE_STR_PY_METADATA",
     "AdjunctCombineStrPyOutputs",
-    "AdjunctCombineStrPyParameters",
     "adjunct_combine_str_py",
+    "adjunct_combine_str_py_execute",
     "adjunct_combine_str_py_params",
 ]

niwrap_afni/afni/adjunct_is_label_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 ADJUNCT_IS_LABEL_PY_METADATA = Metadata(
-    id="fd161fa6ffe35fb86b826e60d07e867baeceef7c.boutiques",
+    id="d2235f4fdb54ec6b5f9ee49cb86db0943973aad4.boutiques",
     name="adjunct_is_label.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,20 @@ ADJUNCT_IS_LABEL_PY_METADATA = Metadata(
 
 
 AdjunctIsLabelPyParameters = typing.TypedDict('AdjunctIsLabelPyParameters', {
-    "__STYXTYPE__": typing.Literal["adjunct_is_label.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/adjunct_is_label.py"]],
+    "infile": InputPathType,
+    "label": str,
+})
+AdjunctIsLabelPyParametersTagged = typing.TypedDict('AdjunctIsLabelPyParametersTagged', {
+    "@type": typing.Literal["afni/adjunct_is_label.py"],
     "infile": InputPathType,
     "label": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "adjunct_is_label.py": adjunct_is_label_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class AdjunctIsLabelPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `adjunct_is_label_py(...)`.
+    Output object returned when calling `AdjunctIsLabelPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -62,7 +36,7 @@ class AdjunctIsLabelPyOutputs(typing.NamedTuple):
 def adjunct_is_label_py_params(
     infile: InputPathType,
     label: str,
-) -> AdjunctIsLabelPyParameters:
+) -> AdjunctIsLabelPyParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +47,7 @@ def adjunct_is_label_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "adjunct_is_label.py",
+        "@type": "afni/adjunct_is_label.py",
         "infile": infile,
         "label": label,
     }
@@ -95,8 +69,8 @@ def adjunct_is_label_py_cargs(
     """
     cargs = []
     cargs.append("adjunct_is_label.py")
-    cargs.append(execution.input_file(params.get("infile")))
-    cargs.append(params.get("label"))
+    cargs.append(execution.input_file(params.get("infile", None)))
+    cargs.append(params.get("label", None))
     return cargs
 
 
@@ -121,9 +95,11 @@ def adjunct_is_label_py_outputs(
 
 def adjunct_is_label_py_execute(
     params: AdjunctIsLabelPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AdjunctIsLabelPyOutputs:
     """
+    adjunct_is_label.py
+    
     A subsidiary script of the chauffeur_afni suite for label functionalities.
     
     Author: AFNI Developers
@@ -132,10 +108,12 @@ def adjunct_is_label_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AdjunctIsLabelPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(ADJUNCT_IS_LABEL_PY_METADATA)
     params = execution.params(params)
     cargs = adjunct_is_label_py_cargs(params, execution)
     ret = adjunct_is_label_py_outputs(params, execution)
@@ -149,6 +127,8 @@ def adjunct_is_label_py(
     runner: Runner | None = None,
 ) -> AdjunctIsLabelPyOutputs:
     """
+    adjunct_is_label.py
+    
     A subsidiary script of the chauffeur_afni suite for label functionalities.
     
     Author: AFNI Developers
@@ -162,19 +142,17 @@ def adjunct_is_label_py(
     Returns:
         NamedTuple of outputs (described in `AdjunctIsLabelPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(ADJUNCT_IS_LABEL_PY_METADATA)
     params = adjunct_is_label_py_params(
         infile=infile,
         label=label,
     )
-    return adjunct_is_label_py_execute(params, execution)
+    return adjunct_is_label_py_execute(params, runner)
 
 
 __all__ = [
     "ADJUNCT_IS_LABEL_PY_METADATA",
     "AdjunctIsLabelPyOutputs",
-    "AdjunctIsLabelPyParameters",
     "adjunct_is_label_py",
+    "adjunct_is_label_py_execute",
     "adjunct_is_label_py_params",
 ]

niwrap_afni/afni/adjunct_make_script_and_rst_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 ADJUNCT_MAKE_SCRIPT_AND_RST_PY_METADATA = Metadata(
-    id="d715c1c643d7b006ced626bc661c6b0f3c88f4c5.boutiques",
+    id="5a086004f7800ee08b4596337d3a8c88235a01ac.boutiques",
     name="adjunct_make_script_and_rst.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,50 +14,26 @@ ADJUNCT_MAKE_SCRIPT_AND_RST_PY_METADATA = Metadata(
 
 
 AdjunctMakeScriptAndRstPyParameters = typing.TypedDict('AdjunctMakeScriptAndRstPyParameters', {
-    "__STYXTYPE__": typing.Literal["adjunct_make_script_and_rst.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/adjunct_make_script_and_rst.py"]],
+    "input_script": InputPathType,
+    "prefix_rst": str,
+    "prefix_script": str,
+    "reflink": str,
+    "execute_script": bool,
+})
+AdjunctMakeScriptAndRstPyParametersTagged = typing.TypedDict('AdjunctMakeScriptAndRstPyParametersTagged', {
+    "@type": typing.Literal["afni/adjunct_make_script_and_rst.py"],
     "input_script": InputPathType,
     "prefix_rst": str,
     "prefix_script": str,
     "reflink": str,
     "execute_script": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "adjunct_make_script_and_rst.py": adjunct_make_script_and_rst_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "adjunct_make_script_and_rst.py": adjunct_make_script_and_rst_py_outputs,
-    }.get(t)
 
 
 class AdjunctMakeScriptAndRstPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `adjunct_make_script_and_rst_py(...)`.
+    Output object returned when calling `AdjunctMakeScriptAndRstPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -75,7 +51,7 @@ def adjunct_make_script_and_rst_py_params(
     prefix_script: str,
     reflink: str,
     execute_script: bool = False,
-) -> AdjunctMakeScriptAndRstPyParameters:
+) -> AdjunctMakeScriptAndRstPyParametersTagged:
     """
     Build parameters.
     
@@ -93,7 +69,7 @@ def adjunct_make_script_and_rst_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "adjunct_make_script_and_rst.py",
+        "@type": "afni/adjunct_make_script_and_rst.py",
         "input_script": input_script,
         "prefix_rst": prefix_rst,
         "prefix_script": prefix_script,
@@ -120,21 +96,21 @@ def adjunct_make_script_and_rst_py_cargs(
     cargs.append("adjunct_make_script_and_rst.py")
     cargs.extend([
         "-input",
-        execution.input_file(params.get("input_script"))
+        execution.input_file(params.get("input_script", None))
     ])
     cargs.extend([
         "--prefix_rst",
-        params.get("prefix_rst")
+        params.get("prefix_rst", None)
     ])
     cargs.extend([
         "--prefix_script",
-        params.get("prefix_script")
+        params.get("prefix_script", None)
     ])
     cargs.extend([
         "--reflink",
-        params.get("reflink")
+        params.get("reflink", None)
     ])
-    if params.get("execute_script"):
+    if params.get("execute_script", False):
         cargs.append("--execute_script")
     return cargs
 
@@ -154,20 +130,22 @@ def adjunct_make_script_and_rst_py_outputs(
     """
     ret = AdjunctMakeScriptAndRstPyOutputs(
         root=execution.output_file("."),
-        rst_file=execution.output_file(params.get("prefix_rst")),
-        script_file=execution.output_file(params.get("prefix_script")),
-        output_directory=execution.output_file(params.get("prefix_rst") + "/media/" + params.get("reflink")),
+        rst_file=execution.output_file(params.get("prefix_rst", None)),
+        script_file=execution.output_file(params.get("prefix_script", None)),
+        output_directory=execution.output_file(params.get("prefix_rst", None) + "/media/" + params.get("reflink", None)),
     )
     return ret
 
 
 def adjunct_make_script_and_rst_py_execute(
     params: AdjunctMakeScriptAndRstPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AdjunctMakeScriptAndRstPyOutputs:
     """
-    Program to take a script with some special markup and turn it into both an RST
-    page and a script for the online Sphinx documentation.
+    adjunct_make_script_and_rst.py
+    
+    Program to take a script with some special markup and turn it into both an
+    RST page and a script for the online Sphinx documentation.
     
     Author: AFNI Developers
     
@@ -175,10 +153,12 @@ def adjunct_make_script_and_rst_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AdjunctMakeScriptAndRstPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(ADJUNCT_MAKE_SCRIPT_AND_RST_PY_METADATA)
     params = execution.params(params)
     cargs = adjunct_make_script_and_rst_py_cargs(params, execution)
     ret = adjunct_make_script_and_rst_py_outputs(params, execution)
@@ -195,8 +175,10 @@ def adjunct_make_script_and_rst_py(
     runner: Runner | None = None,
 ) -> AdjunctMakeScriptAndRstPyOutputs:
     """
-    Program to take a script with some special markup and turn it into both an RST
-    page and a script for the online Sphinx documentation.
+    adjunct_make_script_and_rst.py
+    
+    Program to take a script with some special markup and turn it into both an
+    RST page and a script for the online Sphinx documentation.
     
     Author: AFNI Developers
     
@@ -216,8 +198,6 @@ def adjunct_make_script_and_rst_py(
     Returns:
         NamedTuple of outputs (described in `AdjunctMakeScriptAndRstPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(ADJUNCT_MAKE_SCRIPT_AND_RST_PY_METADATA)
     params = adjunct_make_script_and_rst_py_params(
         input_script=input_script,
         prefix_rst=prefix_rst,
@@ -225,13 +205,13 @@ def adjunct_make_script_and_rst_py(
         reflink=reflink,
         execute_script=execute_script,
     )
-    return adjunct_make_script_and_rst_py_execute(params, execution)
+    return adjunct_make_script_and_rst_py_execute(params, runner)
 
 
 __all__ = [
     "ADJUNCT_MAKE_SCRIPT_AND_RST_PY_METADATA",
     "AdjunctMakeScriptAndRstPyOutputs",
-    "AdjunctMakeScriptAndRstPyParameters",
     "adjunct_make_script_and_rst_py",
+    "adjunct_make_script_and_rst_py_execute",
     "adjunct_make_script_and_rst_py_params",
 ]

niwrap_afni/afni/adjunct_select_str_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 ADJUNCT_SELECT_STR_PY_METADATA = Metadata(
-    id="51bd0c93e4c33858ebe75938263e1d88647851a7.boutiques",
+    id="6cd5b7c3dc004b32564c974ad12a283bfedda12f.boutiques",
     name="adjunct_select_str.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,47 +14,22 @@ ADJUNCT_SELECT_STR_PY_METADATA = Metadata(
 
 
 AdjunctSelectStrPyParameters = typing.TypedDict('AdjunctSelectStrPyParameters', {
-    "__STYXTYPE__": typing.Literal["adjunct_select_str.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/adjunct_select_str.py"]],
+    "input_file": InputPathType,
+    "num_bricks": float,
+    "output_file": str,
+})
+AdjunctSelectStrPyParametersTagged = typing.TypedDict('AdjunctSelectStrPyParametersTagged', {
+    "@type": typing.Literal["afni/adjunct_select_str.py"],
     "input_file": InputPathType,
     "num_bricks": float,
     "output_file": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "adjunct_select_str.py": adjunct_select_str_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class AdjunctSelectStrPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `adjunct_select_str_py(...)`.
+    Output object returned when calling `AdjunctSelectStrPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -64,7 +39,7 @@ def adjunct_select_str_py_params(
     input_file: InputPathType,
     num_bricks: float,
     output_file: str,
-) -> AdjunctSelectStrPyParameters:
+) -> AdjunctSelectStrPyParametersTagged:
     """
     Build parameters.
     
@@ -76,7 +51,7 @@ def adjunct_select_str_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "adjunct_select_str.py",
+        "@type": "afni/adjunct_select_str.py",
         "input_file": input_file,
         "num_bricks": num_bricks,
         "output_file": output_file,
@@ -99,9 +74,9 @@ def adjunct_select_str_py_cargs(
     """
     cargs = []
     cargs.append("adjunct_select_str.py")
-    cargs.append(execution.input_file(params.get("input_file")))
-    cargs.append(str(params.get("num_bricks")))
-    cargs.append(params.get("output_file"))
+    cargs.append(execution.input_file(params.get("input_file", None)))
+    cargs.append(str(params.get("num_bricks", None)))
+    cargs.append(params.get("output_file", None))
     return cargs
 
 
@@ -126,9 +101,11 @@ def adjunct_select_str_py_outputs(
 
 def adjunct_select_str_py_execute(
     params: AdjunctSelectStrPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> AdjunctSelectStrPyOutputs:
     """
+    adjunct_select_str.py
+    
     A simple helper function for the fat_proc* scripts.
     
     Author: AFNI Developers
@@ -137,10 +114,12 @@ def adjunct_select_str_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `AdjunctSelectStrPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(ADJUNCT_SELECT_STR_PY_METADATA)
     params = execution.params(params)
     cargs = adjunct_select_str_py_cargs(params, execution)
     ret = adjunct_select_str_py_outputs(params, execution)
@@ -155,6 +134,8 @@ def adjunct_select_str_py(
     runner: Runner | None = None,
 ) -> AdjunctSelectStrPyOutputs:
     """
+    adjunct_select_str.py
+    
     A simple helper function for the fat_proc* scripts.
     
     Author: AFNI Developers
@@ -169,20 +150,18 @@ def adjunct_select_str_py(
     Returns:
         NamedTuple of outputs (described in `AdjunctSelectStrPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(ADJUNCT_SELECT_STR_PY_METADATA)
     params = adjunct_select_str_py_params(
         input_file=input_file,
         num_bricks=num_bricks,
         output_file=output_file,
     )
-    return adjunct_select_str_py_execute(params, execution)
+    return adjunct_select_str_py_execute(params, runner)
 
 
 __all__ = [
     "ADJUNCT_SELECT_STR_PY_METADATA",
     "AdjunctSelectStrPyOutputs",
-    "AdjunctSelectStrPyParameters",
     "adjunct_select_str_py",
+    "adjunct_select_str_py_execute",
     "adjunct_select_str_py_params",
 ]