niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__center_distance.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__CENTER_DISTANCE_METADATA = Metadata(
-    id="c1fb8e11634781a3137d3f8303111b847d52ddb6.boutiques",
+    id="f179e8348e56e5e6c674b858f8ada01c7b1547c8.boutiques",
     name="@Center_Distance",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,47 +14,20 @@ V__CENTER_DISTANCE_METADATA = Metadata(
 
 
 VCenterDistanceParameters = typing.TypedDict('VCenterDistanceParameters', {
-    "__STYXTYPE__": typing.Literal["@Center_Distance"],
+    "@type": typing.NotRequired[typing.Literal["afni/@Center_Distance"]],
+    "dset1": InputPathType,
+    "dset2": InputPathType,
+})
+VCenterDistanceParametersTagged = typing.TypedDict('VCenterDistanceParametersTagged', {
+    "@type": typing.Literal["afni/@Center_Distance"],
     "dset1": InputPathType,
     "dset2": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@Center_Distance": v__center_distance_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@Center_Distance": v__center_distance_outputs,
-    }.get(t)
 
 
 class VCenterDistanceOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__center_distance(...)`.
+    Output object returned when calling `VCenterDistanceParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -65,7 +38,7 @@ class VCenterDistanceOutputs(typing.NamedTuple):
 def v__center_distance_params(
     dset1: InputPathType,
     dset2: InputPathType,
-) -> VCenterDistanceParameters:
+) -> VCenterDistanceParametersTagged:
     """
     Build parameters.
     
@@ -76,7 +49,7 @@ def v__center_distance_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@Center_Distance",
+        "@type": "afni/@Center_Distance",
         "dset1": dset1,
         "dset2": dset2,
     }
@@ -100,9 +73,9 @@ def v__center_distance_cargs(
     cargs.append("@Center_Distance")
     cargs.extend([
         "-dset",
-        execution.input_file(params.get("dset1"))
+        execution.input_file(params.get("dset1", None))
     ])
-    cargs.append(execution.input_file(params.get("dset2")))
+    cargs.append(execution.input_file(params.get("dset2", None)))
     return cargs
 
 
@@ -128,9 +101,11 @@ def v__center_distance_outputs(
 
 def v__center_distance_execute(
     params: VCenterDistanceParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VCenterDistanceOutputs:
     """
+    @Center_Distance
+    
     Tool to calculate the distance between the centers of two datasets.
     
     Author: AFNI Developers
@@ -139,10 +114,12 @@ def v__center_distance_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VCenterDistanceOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__CENTER_DISTANCE_METADATA)
     params = execution.params(params)
     cargs = v__center_distance_cargs(params, execution)
     ret = v__center_distance_outputs(params, execution)
@@ -156,6 +133,8 @@ def v__center_distance(
     runner: Runner | None = None,
 ) -> VCenterDistanceOutputs:
     """
+    @Center_Distance
+    
     Tool to calculate the distance between the centers of two datasets.
     
     Author: AFNI Developers
@@ -169,19 +148,17 @@ def v__center_distance(
     Returns:
         NamedTuple of outputs (described in `VCenterDistanceOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__CENTER_DISTANCE_METADATA)
     params = v__center_distance_params(
         dset1=dset1,
         dset2=dset2,
     )
-    return v__center_distance_execute(params, execution)
+    return v__center_distance_execute(params, runner)
 
 
 __all__ = [
     "VCenterDistanceOutputs",
-    "VCenterDistanceParameters",
     "V__CENTER_DISTANCE_METADATA",
     "v__center_distance",
+    "v__center_distance_execute",
     "v__center_distance_params",
 ]

niwrap_afni/afni/v__chauffeur_afni.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__CHAUFFEUR_AFNI_METADATA = Metadata(
-    id="bc08654e6aa625d08a0f74755d9ce62b685e3cec.boutiques",
+    id="4609be51012a76cf4219d77097d6e737c6301a9a.boutiques",
     name="@chauffeur_afni",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,28 @@ V__CHAUFFEUR_AFNI_METADATA = Metadata(
 
 
 VChauffeurAfniParameters = typing.TypedDict('VChauffeurAfniParameters', {
-    "__STYXTYPE__": typing.Literal["@chauffeur_afni"],
+    "@type": typing.NotRequired[typing.Literal["afni/@chauffeur_afni"]],
+    "ulay": InputPathType,
+    "olay": typing.NotRequired[InputPathType | None],
+    "prefix": str,
+    "mode_4D": bool,
+    "func_range": typing.NotRequired[float | None],
+    "opacity": typing.NotRequired[float | None],
+    "set_subbricks": typing.NotRequired[str | None],
+    "montx": typing.NotRequired[float | None],
+    "monty": typing.NotRequired[float | None],
+    "montgap": typing.NotRequired[float | None],
+    "label_mode": typing.NotRequired[float | None],
+    "label_size": typing.NotRequired[float | None],
+    "label_color": typing.NotRequired[str | None],
+    "label_setback": typing.NotRequired[float | None],
+    "no_clean": bool,
+    "do_clean": bool,
+    "help": bool,
+    "version": bool,
+})
+VChauffeurAfniParametersTagged = typing.TypedDict('VChauffeurAfniParametersTagged', {
+    "@type": typing.Literal["afni/@chauffeur_afni"],
     "ulay": InputPathType,
     "olay": typing.NotRequired[InputPathType | None],
     "prefix": str,
@@ -34,43 +55,11 @@ VChauffeurAfniParameters = typing.TypedDict('VChauffeurAfniParameters', {
     "help": bool,
     "version": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@chauffeur_afni": v__chauffeur_afni_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@chauffeur_afni": v__chauffeur_afni_outputs,
-    }.get(t)
 
 
 class VChauffeurAfniOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__chauffeur_afni(...)`.
+    Output object returned when calling `VChauffeurAfniParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -101,7 +90,7 @@ def v__chauffeur_afni_params(
     do_clean: bool = False,
     help_: bool = False,
     version: bool = False,
-) -> VChauffeurAfniParameters:
+) -> VChauffeurAfniParametersTagged:
     """
     Build parameters.
     
@@ -132,7 +121,7 @@ def v__chauffeur_afni_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@chauffeur_afni",
+        "@type": "afni/@chauffeur_afni",
         "ulay": ulay,
         "prefix": prefix,
         "mode_4D": mode_4_d,
@@ -181,72 +170,72 @@ def v__chauffeur_afni_cargs(
     """
     cargs = []
     cargs.append("@chauffeur_afni")
-    cargs.append(execution.input_file(params.get("ulay")))
-    if params.get("olay") is not None:
-        cargs.append(execution.input_file(params.get("olay")))
+    cargs.append(execution.input_file(params.get("ulay", None)))
+    if params.get("olay", None) is not None:
+        cargs.append(execution.input_file(params.get("olay", None)))
     cargs.extend([
         "-prefix",
-        params.get("prefix")
+        params.get("prefix", None)
     ])
-    if params.get("mode_4D"):
+    if params.get("mode_4D", False):
         cargs.append("-mode_4D")
-    if params.get("func_range") is not None:
+    if params.get("func_range", None) is not None:
         cargs.extend([
             "-func_range",
-            str(params.get("func_range"))
+            str(params.get("func_range", None))
         ])
-    if params.get("opacity") is not None:
+    if params.get("opacity", None) is not None:
         cargs.extend([
             "-opacity",
-            str(params.get("opacity"))
+            str(params.get("opacity", None))
         ])
-    if params.get("set_subbricks") is not None:
+    if params.get("set_subbricks", None) is not None:
         cargs.extend([
             "-set_subbricks",
-            params.get("set_subbricks")
+            params.get("set_subbricks", None)
         ])
-    if params.get("montx") is not None:
+    if params.get("montx", None) is not None:
         cargs.extend([
             "-montx",
-            str(params.get("montx"))
+            str(params.get("montx", None))
         ])
-    if params.get("monty") is not None:
+    if params.get("monty", None) is not None:
         cargs.extend([
             "-monty",
-            str(params.get("monty"))
+            str(params.get("monty", None))
         ])
-    if params.get("montgap") is not None:
+    if params.get("montgap", None) is not None:
         cargs.extend([
             "-montgap",
-            str(params.get("montgap"))
+            str(params.get("montgap", None))
         ])
-    if params.get("label_mode") is not None:
+    if params.get("label_mode", None) is not None:
         cargs.extend([
             "-label_mode",
-            str(params.get("label_mode"))
+            str(params.get("label_mode", None))
         ])
-    if params.get("label_size") is not None:
+    if params.get("label_size", None) is not None:
         cargs.extend([
             "-label_size",
-            str(params.get("label_size"))
+            str(params.get("label_size", None))
         ])
-    if params.get("label_color") is not None:
+    if params.get("label_color", None) is not None:
         cargs.extend([
             "-label_color",
-            params.get("label_color")
+            params.get("label_color", None)
         ])
-    if params.get("label_setback") is not None:
+    if params.get("label_setback", None) is not None:
         cargs.extend([
             "-label_setback",
-            str(params.get("label_setback"))
+            str(params.get("label_setback", None))
         ])
-    if params.get("no_clean"):
+    if params.get("no_clean", False):
         cargs.append("-no_clean")
-    if params.get("do_clean"):
+    if params.get("do_clean", False):
         cargs.append("-do_clean")
-    if params.get("help"):
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-ver")
     return cargs
 
@@ -266,18 +255,20 @@ def v__chauffeur_afni_outputs(
     """
     ret = VChauffeurAfniOutputs(
         root=execution.output_file("."),
-        output_image=execution.output_file(params.get("prefix") + ".png"),
-        cluster_report=execution.output_file(params.get("prefix") + "_clust_rep.txt"),
-        whereami_report=execution.output_file(params.get("prefix") + "_clust_whereami.txt"),
+        output_image=execution.output_file(params.get("prefix", None) + ".png"),
+        cluster_report=execution.output_file(params.get("prefix", None) + "_clust_rep.txt"),
+        whereami_report=execution.output_file(params.get("prefix", None) + "_clust_whereami.txt"),
     )
     return ret
 
 
 def v__chauffeur_afni_execute(
     params: VChauffeurAfniParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VChauffeurAfniOutputs:
     """
+    @chauffeur_afni
+    
     Automated QC snapshots generator in AFNI.
     
     Author: AFNI Developers
@@ -286,10 +277,12 @@ def v__chauffeur_afni_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VChauffeurAfniOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__CHAUFFEUR_AFNI_METADATA)
     params = execution.params(params)
     cargs = v__chauffeur_afni_cargs(params, execution)
     ret = v__chauffeur_afni_outputs(params, execution)
@@ -319,6 +312,8 @@ def v__chauffeur_afni(
     runner: Runner | None = None,
 ) -> VChauffeurAfniOutputs:
     """
+    @chauffeur_afni
+    
     Automated QC snapshots generator in AFNI.
     
     Author: AFNI Developers
@@ -352,8 +347,6 @@ def v__chauffeur_afni(
     Returns:
         NamedTuple of outputs (described in `VChauffeurAfniOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__CHAUFFEUR_AFNI_METADATA)
     params = v__chauffeur_afni_params(
         ulay=ulay,
         olay=olay,
@@ -374,13 +367,13 @@ def v__chauffeur_afni(
         help_=help_,
         version=version,
     )
-    return v__chauffeur_afni_execute(params, execution)
+    return v__chauffeur_afni_execute(params, runner)
 
 
 __all__ = [
     "VChauffeurAfniOutputs",
-    "VChauffeurAfniParameters",
     "V__CHAUFFEUR_AFNI_METADATA",
     "v__chauffeur_afni",
+    "v__chauffeur_afni_execute",
     "v__chauffeur_afni_params",
 ]

niwrap_afni/afni/v__check_for_afni_dset.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__CHECK_FOR_AFNI_DSET_METADATA = Metadata(
-    id="fa234d26303883d346b1a38eef0ee2b0f587adad.boutiques",
+    id="ff6f4cebbc73c5968164aafe5e717c47545f280a.boutiques",
     name="@CheckForAfniDset",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__CHECK_FOR_AFNI_DSET_METADATA = Metadata(
 
 
 VCheckForAfniDsetParameters = typing.TypedDict('VCheckForAfniDsetParameters', {
-    "__STYXTYPE__": typing.Literal["@CheckForAfniDset"],
+    "@type": typing.NotRequired[typing.Literal["afni/@CheckForAfniDset"]],
+    "dataset_name": str,
+})
+VCheckForAfniDsetParametersTagged = typing.TypedDict('VCheckForAfniDsetParametersTagged', {
+    "@type": typing.Literal["afni/@CheckForAfniDset"],
     "dataset_name": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@CheckForAfniDset": v__check_for_afni_dset_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@CheckForAfniDset": v__check_for_afni_dset_outputs,
-    }.get(t)
 
 
 class VCheckForAfniDsetOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__check_for_afni_dset(...)`.
+    Output object returned when calling `VCheckForAfniDsetParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class VCheckForAfniDsetOutputs(typing.NamedTuple):
 
 def v__check_for_afni_dset_params(
     dataset_name: str,
-) -> VCheckForAfniDsetParameters:
+) -> VCheckForAfniDsetParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +46,7 @@ def v__check_for_afni_dset_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@CheckForAfniDset",
+        "@type": "afni/@CheckForAfniDset",
         "dataset_name": dataset_name,
     }
     return params
@@ -95,7 +67,7 @@ def v__check_for_afni_dset_cargs(
     """
     cargs = []
     cargs.append("@CheckForAfniDset")
-    cargs.append(params.get("dataset_name"))
+    cargs.append(params.get("dataset_name", None))
     return cargs
 
 
@@ -114,16 +86,18 @@ def v__check_for_afni_dset_outputs(
     """
     ret = VCheckForAfniDsetOutputs(
         root=execution.output_file("."),
-        output_status=execution.output_file(params.get("dataset_name") + "_status.txt"),
+        output_status=execution.output_file(params.get("dataset_name", None) + "_status.txt"),
     )
     return ret
 
 
 def v__check_for_afni_dset_execute(
     params: VCheckForAfniDsetParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VCheckForAfniDsetOutputs:
     """
+    @CheckForAfniDset
+    
     Check for the existence of AFNI datasets.
     
     Author: AFNI Developers
@@ -132,10 +106,12 @@ def v__check_for_afni_dset_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VCheckForAfniDsetOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__CHECK_FOR_AFNI_DSET_METADATA)
     params = execution.params(params)
     cargs = v__check_for_afni_dset_cargs(params, execution)
     ret = v__check_for_afni_dset_outputs(params, execution)
@@ -148,6 +124,8 @@ def v__check_for_afni_dset(
     runner: Runner | None = None,
 ) -> VCheckForAfniDsetOutputs:
     """
+    @CheckForAfniDset
+    
     Check for the existence of AFNI datasets.
     
     Author: AFNI Developers
@@ -161,18 +139,16 @@ def v__check_for_afni_dset(
     Returns:
         NamedTuple of outputs (described in `VCheckForAfniDsetOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__CHECK_FOR_AFNI_DSET_METADATA)
     params = v__check_for_afni_dset_params(
         dataset_name=dataset_name,
     )
-    return v__check_for_afni_dset_execute(params, execution)
+    return v__check_for_afni_dset_execute(params, runner)
 
 
 __all__ = [
     "VCheckForAfniDsetOutputs",
-    "VCheckForAfniDsetParameters",
     "V__CHECK_FOR_AFNI_DSET_METADATA",
     "v__check_for_afni_dset",
+    "v__check_for_afni_dset_execute",
     "v__check_for_afni_dset_params",
 ]