niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v_1deval.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_1DEVAL_METADATA = Metadata(
-    id="2d05acc3dd71b6fa154f28feedd32f1badace561.boutiques",
+    id="a3a64eac19d64e236c7f462e0f632bed723d582b.boutiques",
     name="1deval",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,18 @@ V_1DEVAL_METADATA = Metadata(
 
 
 V1devalParameters = typing.TypedDict('V1devalParameters', {
-    "__STYXTYPE__": typing.Literal["1deval"],
+    "@type": typing.NotRequired[typing.Literal["afni/1deval"]],
+    "del": typing.NotRequired[float | None],
+    "start": typing.NotRequired[float | None],
+    "num": typing.NotRequired[float | None],
+    "index": typing.NotRequired[InputPathType | None],
+    "1D": bool,
+    "symbols": typing.NotRequired[list[InputPathType] | None],
+    "symbol_values": typing.NotRequired[list[str] | None],
+    "expression": str,
+})
+V1devalParametersTagged = typing.TypedDict('V1devalParametersTagged', {
+    "@type": typing.Literal["afni/1deval"],
     "del": typing.NotRequired[float | None],
     "start": typing.NotRequired[float | None],
     "num": typing.NotRequired[float | None],
@@ -24,43 +35,11 @@ V1devalParameters = typing.TypedDict('V1devalParameters', {
     "symbol_values": typing.NotRequired[list[str] | None],
     "expression": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "1deval": v_1deval_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "1deval": v_1deval_outputs,
-    }.get(t)
 
 
 class V1devalOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_1deval(...)`.
+    Output object returned when calling `V1devalParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -77,7 +56,7 @@ def v_1deval_params(
     v_1_d: bool = False,
     symbols: list[InputPathType] | None = None,
     symbol_values: list[str] | None = None,
-) -> V1devalParameters:
+) -> V1devalParametersTagged:
     """
     Build parameters.
     
@@ -100,7 +79,7 @@ def v_1deval_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "1deval",
+        "@type": "afni/1deval",
         "1D": v_1_d,
         "expression": expression,
     }
@@ -134,41 +113,41 @@ def v_1deval_cargs(
     """
     cargs = []
     cargs.append("1deval")
-    if params.get("del") is not None:
+    if params.get("del", None) is not None:
         cargs.extend([
             "-del",
-            str(params.get("del"))
+            str(params.get("del", None))
         ])
-    if params.get("start") is not None:
+    if params.get("start", None) is not None:
         cargs.extend([
             "-start",
-            str(params.get("start"))
+            str(params.get("start", None))
         ])
-    if params.get("num") is not None:
+    if params.get("num", None) is not None:
         cargs.extend([
             "-num",
-            str(params.get("num"))
+            str(params.get("num", None))
         ])
-    if params.get("index") is not None:
+    if params.get("index", None) is not None:
         cargs.extend([
             "-index",
-            execution.input_file(params.get("index"))
+            execution.input_file(params.get("index", None))
         ])
-    if params.get("1D"):
+    if params.get("1D", False):
         cargs.append("-1D:")
-    if params.get("symbols") is not None:
+    if params.get("symbols", None) is not None:
         cargs.extend([
             "-a",
-            *[execution.input_file(f) for f in params.get("symbols")]
+            *[execution.input_file(f) for f in params.get("symbols", None)]
         ])
-    if params.get("symbol_values") is not None:
+    if params.get("symbol_values", None) is not None:
         cargs.extend([
             "-a=",
-            *params.get("symbol_values")
+            *params.get("symbol_values", None)
         ])
     cargs.extend([
         "-expr",
-        params.get("expression")
+        params.get("expression", None)
     ])
     return cargs
 
@@ -195,11 +174,13 @@ def v_1deval_outputs(
 
 def v_1deval_execute(
     params: V1devalParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1devalOutputs:
     """
-    Evaluates an expression that may include columns of data from one or more text
-    files and writes the result to stdout.
+    1deval
+    
+    Evaluates an expression that may include columns of data from one or more
+    text files and writes the result to stdout.
     
     Author: AFNI Developers
     
@@ -207,10 +188,12 @@ def v_1deval_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1devalOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_1DEVAL_METADATA)
     params = execution.params(params)
     cargs = v_1deval_cargs(params, execution)
     ret = v_1deval_outputs(params, execution)
@@ -230,8 +213,10 @@ def v_1deval(
     runner: Runner | None = None,
 ) -> V1devalOutputs:
     """
-    Evaluates an expression that may include columns of data from one or more text
-    files and writes the result to stdout.
+    1deval
+    
+    Evaluates an expression that may include columns of data from one or more
+    text files and writes the result to stdout.
     
     Author: AFNI Developers
     
@@ -256,8 +241,6 @@ def v_1deval(
     Returns:
         NamedTuple of outputs (described in `V1devalOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_1DEVAL_METADATA)
     params = v_1deval_params(
         del_=del_,
         start=start,
@@ -268,13 +251,13 @@ def v_1deval(
         symbol_values=symbol_values,
         expression=expression,
     )
-    return v_1deval_execute(params, execution)
+    return v_1deval_execute(params, runner)
 
 
 __all__ = [
     "V1devalOutputs",
-    "V1devalParameters",
     "V_1DEVAL_METADATA",
     "v_1deval",
+    "v_1deval_execute",
     "v_1deval_params",
 ]

niwrap_afni/afni/v_1dfft.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_1DFFT_METADATA = Metadata(
-    id="1b564754f8ff373ff1545761e4e2740ba1cf898f.boutiques",
+    id="caefc7d8624de50408fd39f32f266189e373c0aa.boutiques",
     name="1dfft",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,19 @@ V_1DFFT_METADATA = Metadata(
 
 
 V1dfftParameters = typing.TypedDict('V1dfftParameters', {
-    "__STYXTYPE__": typing.Literal["1dfft"],
+    "@type": typing.NotRequired[typing.Literal["afni/1dfft"]],
+    "infile": InputPathType,
+    "outfile": str,
+    "ignore": typing.NotRequired[float | None],
+    "use": typing.NotRequired[float | None],
+    "nfft": typing.NotRequired[float | None],
+    "tocx": bool,
+    "fromcx": bool,
+    "hilbert": bool,
+    "nodetrend": bool,
+})
+V1dfftParametersTagged = typing.TypedDict('V1dfftParametersTagged', {
+    "@type": typing.Literal["afni/1dfft"],
     "infile": InputPathType,
     "outfile": str,
     "ignore": typing.NotRequired[float | None],
@@ -25,43 +37,11 @@ V1dfftParameters = typing.TypedDict('V1dfftParameters', {
     "hilbert": bool,
     "nodetrend": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "1dfft": v_1dfft_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "1dfft": v_1dfft_outputs,
-    }.get(t)
 
 
 class V1dfftOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_1dfft(...)`.
+    Output object returned when calling `V1dfftParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -79,7 +59,7 @@ def v_1dfft_params(
     fromcx: bool = False,
     hilbert: bool = False,
     nodetrend: bool = False,
-) -> V1dfftParameters:
+) -> V1dfftParametersTagged:
     """
     Build parameters.
     
@@ -102,7 +82,7 @@ def v_1dfft_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "1dfft",
+        "@type": "afni/1dfft",
         "infile": infile,
         "outfile": outfile,
         "tocx": tocx,
@@ -134,30 +114,30 @@ def v_1dfft_cargs(
     """
     cargs = []
     cargs.append("1dfft")
-    cargs.append(execution.input_file(params.get("infile")))
-    cargs.append(params.get("outfile"))
-    if params.get("ignore") is not None:
+    cargs.append(execution.input_file(params.get("infile", None)))
+    cargs.append(params.get("outfile", None))
+    if params.get("ignore", None) is not None:
         cargs.extend([
             "-ignore",
-            str(params.get("ignore"))
+            str(params.get("ignore", None))
         ])
-    if params.get("use") is not None:
+    if params.get("use", None) is not None:
         cargs.extend([
             "-use",
-            str(params.get("use"))
+            str(params.get("use", None))
         ])
-    if params.get("nfft") is not None:
+    if params.get("nfft", None) is not None:
         cargs.extend([
             "-nfft",
-            str(params.get("nfft"))
+            str(params.get("nfft", None))
         ])
-    if params.get("tocx"):
+    if params.get("tocx", False):
         cargs.append("-tocx")
-    if params.get("fromcx"):
+    if params.get("fromcx", False):
         cargs.append("-fromcx")
-    if params.get("hilbert"):
+    if params.get("hilbert", False):
         cargs.append("-hilbert")
-    if params.get("nodetrend"):
+    if params.get("nodetrend", False):
         cargs.append("-nodetrend")
     return cargs
 
@@ -177,16 +157,18 @@ def v_1dfft_outputs(
     """
     ret = V1dfftOutputs(
         root=execution.output_file("."),
-        out_fft=execution.output_file(params.get("outfile")),
+        out_fft=execution.output_file(params.get("outfile", None)),
     )
     return ret
 
 
 def v_1dfft_execute(
     params: V1dfftParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1dfftOutputs:
     """
+    1dfft
+    
     Compute the absolute value of the FFT of input columns from an AFNI 1D file.
     
     Author: AFNI Developers
@@ -195,10 +177,12 @@ def v_1dfft_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1dfftOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_1DFFT_METADATA)
     params = execution.params(params)
     cargs = v_1dfft_cargs(params, execution)
     ret = v_1dfft_outputs(params, execution)
@@ -219,6 +203,8 @@ def v_1dfft(
     runner: Runner | None = None,
 ) -> V1dfftOutputs:
     """
+    1dfft
+    
     Compute the absolute value of the FFT of input columns from an AFNI 1D file.
     
     Author: AFNI Developers
@@ -244,8 +230,6 @@ def v_1dfft(
     Returns:
         NamedTuple of outputs (described in `V1dfftOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_1DFFT_METADATA)
     params = v_1dfft_params(
         infile=infile,
         outfile=outfile,
@@ -257,13 +241,13 @@ def v_1dfft(
         hilbert=hilbert,
         nodetrend=nodetrend,
     )
-    return v_1dfft_execute(params, execution)
+    return v_1dfft_execute(params, runner)
 
 
 __all__ = [
     "V1dfftOutputs",
-    "V1dfftParameters",
     "V_1DFFT_METADATA",
     "v_1dfft",
+    "v_1dfft_execute",
     "v_1dfft_params",
 ]

niwrap_afni/afni/v_1dgen_arma11.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_1DGEN_ARMA11_METADATA = Metadata(
-    id="d3d64709ffedbcb6d22bdf6adacec22853afa9ab.boutiques",
+    id="ff8bfe0d494d40be078d851adeaa60fadc2b914e.boutiques",
     name="1dgenARMA11",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,22 @@ V_1DGEN_ARMA11_METADATA = Metadata(
 
 
 V1dgenArma11Parameters = typing.TypedDict('V1dgenArma11Parameters', {
-    "__STYXTYPE__": typing.Literal["1dgenARMA11"],
+    "@type": typing.NotRequired[typing.Literal["afni/1dgenARMA11"]],
+    "length": typing.NotRequired[float | None],
+    "length_alt": typing.NotRequired[float | None],
+    "num_series": typing.NotRequired[float | None],
+    "param_a": typing.NotRequired[float | None],
+    "param_b": typing.NotRequired[float | None],
+    "param_lam": typing.NotRequired[float | None],
+    "std_dev": typing.NotRequired[float | None],
+    "normalize": bool,
+    "seed": typing.NotRequired[float | None],
+    "corcut": typing.NotRequired[float | None],
+    "arma31": typing.NotRequired[str | None],
+    "arma51": typing.NotRequired[str | None],
+})
+V1dgenArma11ParametersTagged = typing.TypedDict('V1dgenArma11ParametersTagged', {
+    "@type": typing.Literal["afni/1dgenARMA11"],
     "length": typing.NotRequired[float | None],
     "length_alt": typing.NotRequired[float | None],
     "num_series": typing.NotRequired[float | None],
@@ -28,43 +43,11 @@ V1dgenArma11Parameters = typing.TypedDict('V1dgenArma11Parameters', {
     "arma31": typing.NotRequired[str | None],
     "arma51": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "1dgenARMA11": v_1dgen_arma11_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "1dgenARMA11": v_1dgen_arma11_outputs,
-    }.get(t)
 
 
 class V1dgenArma11Outputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_1dgen_arma11(...)`.
+    Output object returned when calling `V1dgenArma11Parameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -85,7 +68,7 @@ def v_1dgen_arma11_params(
     corcut: float | None = None,
     arma31: str | None = None,
     arma51: str | None = None,
-) -> V1dgenArma11Parameters:
+) -> V1dgenArma11ParametersTagged:
     """
     Build parameters.
     
@@ -112,7 +95,7 @@ def v_1dgen_arma11_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "1dgenARMA11",
+        "@type": "afni/1dgenARMA11",
         "normalize": normalize,
     }
     if length is not None:
@@ -155,62 +138,62 @@ def v_1dgen_arma11_cargs(
     """
     cargs = []
     cargs.append("1dgenARMA11")
-    if params.get("length") is not None:
+    if params.get("length", None) is not None:
         cargs.extend([
             "-num",
-            str(params.get("length"))
+            str(params.get("length", None))
         ])
-    if params.get("length_alt") is not None:
+    if params.get("length_alt", None) is not None:
         cargs.extend([
             "-len",
-            str(params.get("length_alt"))
+            str(params.get("length_alt", None))
         ])
-    if params.get("num_series") is not None:
+    if params.get("num_series", None) is not None:
         cargs.extend([
             "-nvec",
-            str(params.get("num_series"))
+            str(params.get("num_series", None))
         ])
-    if params.get("param_a") is not None:
+    if params.get("param_a", None) is not None:
         cargs.extend([
             "-a",
-            str(params.get("param_a"))
+            str(params.get("param_a", None))
         ])
-    if params.get("param_b") is not None:
+    if params.get("param_b", None) is not None:
         cargs.extend([
             "-b",
-            str(params.get("param_b"))
+            str(params.get("param_b", None))
         ])
-    if params.get("param_lam") is not None:
+    if params.get("param_lam", None) is not None:
         cargs.extend([
             "-lam",
-            str(params.get("param_lam"))
+            str(params.get("param_lam", None))
         ])
-    if params.get("std_dev") is not None:
+    if params.get("std_dev", None) is not None:
         cargs.extend([
             "-sig",
-            str(params.get("std_dev"))
+            str(params.get("std_dev", None))
         ])
-    if params.get("normalize"):
+    if params.get("normalize", False):
         cargs.append("-norm")
-    if params.get("seed") is not None:
+    if params.get("seed", None) is not None:
         cargs.extend([
             "-seed",
-            str(params.get("seed"))
+            str(params.get("seed", None))
         ])
-    if params.get("corcut") is not None:
+    if params.get("corcut", None) is not None:
         cargs.extend([
             "-CORcut",
-            str(params.get("corcut"))
+            str(params.get("corcut", None))
         ])
-    if params.get("arma31") is not None:
+    if params.get("arma31", None) is not None:
         cargs.extend([
             "-arma31",
-            params.get("arma31")
+            params.get("arma31", None)
         ])
-    if params.get("arma51") is not None:
+    if params.get("arma51", None) is not None:
         cargs.extend([
             "-arma51",
-            params.get("arma51")
+            params.get("arma51", None)
         ])
     return cargs
 
@@ -237,11 +220,13 @@ def v_1dgen_arma11_outputs(
 
 def v_1dgen_arma11_execute(
     params: V1dgenArma11Parameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1dgenArma11Outputs:
     """
-    Program to generate an ARMA(1,1) time series, for simulation studies. Results
-    are written to stdout.
+    1dgenARMA11
+    
+    Program to generate an ARMA(1,1) time series, for simulation studies.
+    Results are written to stdout.
     
     Author: AFNI Developers
     
@@ -249,10 +234,12 @@ def v_1dgen_arma11_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1dgenArma11Outputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_1DGEN_ARMA11_METADATA)
     params = execution.params(params)
     cargs = v_1dgen_arma11_cargs(params, execution)
     ret = v_1dgen_arma11_outputs(params, execution)
@@ -276,8 +263,10 @@ def v_1dgen_arma11(
     runner: Runner | None = None,
 ) -> V1dgenArma11Outputs:
     """
-    Program to generate an ARMA(1,1) time series, for simulation studies. Results
-    are written to stdout.
+    1dgenARMA11
+    
+    Program to generate an ARMA(1,1) time series, for simulation studies.
+    Results are written to stdout.
     
     Author: AFNI Developers
     
@@ -306,8 +295,6 @@ def v_1dgen_arma11(
     Returns:
         NamedTuple of outputs (described in `V1dgenArma11Outputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_1DGEN_ARMA11_METADATA)
     params = v_1dgen_arma11_params(
         length=length,
         length_alt=length_alt,
@@ -322,13 +309,13 @@ def v_1dgen_arma11(
         arma31=arma31,
         arma51=arma51,
     )
-    return v_1dgen_arma11_execute(params, execution)
+    return v_1dgen_arma11_execute(params, runner)
 
 
 __all__ = [
     "V1dgenArma11Outputs",
-    "V1dgenArma11Parameters",
     "V_1DGEN_ARMA11_METADATA",
     "v_1dgen_arma11",
+    "v_1dgen_arma11_execute",
     "v_1dgen_arma11_params",
 ]