niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__deblank_file_names.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DEBLANK_FILE_NAMES_METADATA = Metadata(
-    id="5ee51800cef7163b87f314574ef99b6eec9f40f6.boutiques",
+    id="a4ade0381653186c414b4d6513135f328146083b.boutiques",
     name="@DeblankFileNames",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ V__DEBLANK_FILE_NAMES_METADATA = Metadata(
 
 
 VDeblankFileNamesParameters = typing.TypedDict('VDeblankFileNamesParameters', {
-    "__STYXTYPE__": typing.Literal["@DeblankFileNames"],
+    "@type": typing.NotRequired[typing.Literal["afni/@DeblankFileNames"]],
+    "move": bool,
+    "nobrac": bool,
+    "demo_set": bool,
+    "echo": bool,
+    "help": bool,
+    "files": typing.NotRequired[list[InputPathType] | None],
+})
+VDeblankFileNamesParametersTagged = typing.TypedDict('VDeblankFileNamesParametersTagged', {
+    "@type": typing.Literal["afni/@DeblankFileNames"],
     "move": bool,
     "nobrac": bool,
     "demo_set": bool,
@@ -22,42 +31,11 @@ VDeblankFileNamesParameters = typing.TypedDict('VDeblankFileNamesParameters', {
     "help": bool,
     "files": typing.NotRequired[list[InputPathType] | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@DeblankFileNames": v__deblank_file_names_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDeblankFileNamesOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__deblank_file_names(...)`.
+    Output object returned when calling `VDeblankFileNamesParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -70,7 +48,7 @@ def v__deblank_file_names_params(
     echo: bool = False,
     help_: bool = False,
     files: list[InputPathType] | None = None,
-) -> VDeblankFileNamesParameters:
+) -> VDeblankFileNamesParametersTagged:
     """
     Build parameters.
     
@@ -86,7 +64,7 @@ def v__deblank_file_names_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@DeblankFileNames",
+        "@type": "afni/@DeblankFileNames",
         "move": move,
         "nobrac": nobrac,
         "demo_set": demo_set,
@@ -113,18 +91,18 @@ def v__deblank_file_names_cargs(
     """
     cargs = []
     cargs.append("@DeblankFileNames")
-    if params.get("move"):
+    if params.get("move", False):
         cargs.append("-move")
-    if params.get("nobrac"):
+    if params.get("nobrac", False):
         cargs.append("-nobrac")
-    if params.get("demo_set"):
+    if params.get("demo_set", False):
         cargs.append("-demo_set")
-    if params.get("echo"):
+    if params.get("echo", False):
         cargs.append("-echo")
-    if params.get("help"):
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("files") is not None:
-        cargs.extend([execution.input_file(f) for f in params.get("files")])
+    if params.get("files", None) is not None:
+        cargs.extend([execution.input_file(f) for f in params.get("files", None)])
     return cargs
 
 
@@ -149,10 +127,13 @@ def v__deblank_file_names_outputs(
 
 def v__deblank_file_names_execute(
     params: VDeblankFileNamesParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDeblankFileNamesOutputs:
     """
-    A script to remove blanks and other annoying characters ([], ()) from filenames.
+    @DeblankFileNames
+    
+    A script to remove blanks and other annoying characters ([], ()) from
+    filenames.
     
     Author: AFNI Developers
     
@@ -160,10 +141,12 @@ def v__deblank_file_names_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDeblankFileNamesOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DEBLANK_FILE_NAMES_METADATA)
     params = execution.params(params)
     cargs = v__deblank_file_names_cargs(params, execution)
     ret = v__deblank_file_names_outputs(params, execution)
@@ -181,7 +164,10 @@ def v__deblank_file_names(
     runner: Runner | None = None,
 ) -> VDeblankFileNamesOutputs:
     """
-    A script to remove blanks and other annoying characters ([], ()) from filenames.
+    @DeblankFileNames
+    
+    A script to remove blanks and other annoying characters ([], ()) from
+    filenames.
     
     Author: AFNI Developers
     
@@ -199,8 +185,6 @@ def v__deblank_file_names(
     Returns:
         NamedTuple of outputs (described in `VDeblankFileNamesOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DEBLANK_FILE_NAMES_METADATA)
     params = v__deblank_file_names_params(
         move=move,
         nobrac=nobrac,
@@ -209,13 +193,13 @@ def v__deblank_file_names(
         help_=help_,
         files=files,
     )
-    return v__deblank_file_names_execute(params, execution)
+    return v__deblank_file_names_execute(params, runner)
 
 
 __all__ = [
     "VDeblankFileNamesOutputs",
-    "VDeblankFileNamesParameters",
     "V__DEBLANK_FILE_NAMES_METADATA",
     "v__deblank_file_names",
+    "v__deblank_file_names_execute",
     "v__deblank_file_names_params",
 ]

niwrap_afni/afni/v__demo_prompt.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DEMO_PROMPT_METADATA = Metadata(
-    id="c4b5e7f34c3a5cb4cd23d570b2079024d2ba5ad5.boutiques",
+    id="4251e0d6491e307ef7755ae3aaf712a6534ad2f2.boutiques",
     name="@demo_prompt",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__DEMO_PROMPT_METADATA = Metadata(
 
 
 VDemoPromptParameters = typing.TypedDict('VDemoPromptParameters', {
-    "__STYXTYPE__": typing.Literal["@demo_prompt"],
+    "@type": typing.NotRequired[typing.Literal["afni/@demo_prompt"]],
+    "message": str,
+})
+VDemoPromptParametersTagged = typing.TypedDict('VDemoPromptParametersTagged', {
+    "@type": typing.Literal["afni/@demo_prompt"],
     "message": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@demo_prompt": v__demo_prompt_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@demo_prompt": v__demo_prompt_outputs,
-    }.get(t)
 
 
 class VDemoPromptOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__demo_prompt(...)`.
+    Output object returned when calling `VDemoPromptParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class VDemoPromptOutputs(typing.NamedTuple):
 
 def v__demo_prompt_params(
     message: str,
-) -> VDemoPromptParameters:
+) -> VDemoPromptParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +45,7 @@ def v__demo_prompt_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@demo_prompt",
+        "@type": "afni/@demo_prompt",
         "message": message,
     }
     return params
@@ -94,7 +66,7 @@ def v__demo_prompt_cargs(
     """
     cargs = []
     cargs.append("@demo_prompt")
-    cargs.append(params.get("message"))
+    cargs.append(params.get("message", None))
     return cargs
 
 
@@ -120,9 +92,11 @@ def v__demo_prompt_outputs(
 
 def v__demo_prompt_execute(
     params: VDemoPromptParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDemoPromptOutputs:
     """
+    @demo_prompt
+    
     Prompts user with a message and waits for acknowledgment.
     
     Author: AFNI Developers
@@ -131,10 +105,12 @@ def v__demo_prompt_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDemoPromptOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DEMO_PROMPT_METADATA)
     params = execution.params(params)
     cargs = v__demo_prompt_cargs(params, execution)
     ret = v__demo_prompt_outputs(params, execution)
@@ -147,6 +123,8 @@ def v__demo_prompt(
     runner: Runner | None = None,
 ) -> VDemoPromptOutputs:
     """
+    @demo_prompt
+    
     Prompts user with a message and waits for acknowledgment.
     
     Author: AFNI Developers
@@ -159,18 +137,16 @@ def v__demo_prompt(
     Returns:
         NamedTuple of outputs (described in `VDemoPromptOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DEMO_PROMPT_METADATA)
     params = v__demo_prompt_params(
         message=message,
     )
-    return v__demo_prompt_execute(params, execution)
+    return v__demo_prompt_execute(params, runner)
 
 
 __all__ = [
     "VDemoPromptOutputs",
-    "VDemoPromptParameters",
     "V__DEMO_PROMPT_METADATA",
     "v__demo_prompt",
+    "v__demo_prompt_execute",
     "v__demo_prompt_params",
 ]

niwrap_afni/afni/v__dice_metric.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__DICE_METRIC_METADATA = Metadata(
-    id="fa48f6aeea318af3d334f9731c18e1c38c549246.boutiques",
+    id="3827ccde2853d6201108799ed58e5424de9271d1.boutiques",
     name="@DiceMetric",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,23 @@ V__DICE_METRIC_METADATA = Metadata(
 
 
 VDiceMetricParameters = typing.TypedDict('VDiceMetricParameters', {
-    "__STYXTYPE__": typing.Literal["@DiceMetric"],
+    "@type": typing.NotRequired[typing.Literal["afni/@DiceMetric"]],
+    "base": InputPathType,
+    "dsets": list[InputPathType],
+    "max_roi": typing.NotRequired[float | None],
+    "labeltable": typing.NotRequired[InputPathType | None],
+    "forceoutput": typing.NotRequired[InputPathType | None],
+    "echo": bool,
+    "save_match": bool,
+    "save_diff": bool,
+    "do_not_mask_by_base": bool,
+    "mask_by_base": bool,
+    "prefix": typing.NotRequired[str | None],
+    "ignore_bad": bool,
+    "keep_tmp": bool,
+})
+VDiceMetricParametersTagged = typing.TypedDict('VDiceMetricParametersTagged', {
+    "@type": typing.Literal["afni/@DiceMetric"],
     "base": InputPathType,
     "dsets": list[InputPathType],
     "max_roi": typing.NotRequired[float | None],
@@ -29,42 +45,11 @@ VDiceMetricParameters = typing.TypedDict('VDiceMetricParameters', {
     "ignore_bad": bool,
     "keep_tmp": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@DiceMetric": v__dice_metric_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VDiceMetricOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__dice_metric(...)`.
+    Output object returned when calling `VDiceMetricParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -84,7 +69,7 @@ def v__dice_metric_params(
     prefix: str | None = None,
     ignore_bad: bool = False,
     keep_tmp: bool = False,
-) -> VDiceMetricParameters:
+) -> VDiceMetricParametersTagged:
     """
     Build parameters.
     
@@ -115,7 +100,7 @@ def v__dice_metric_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@DiceMetric",
+        "@type": "afni/@DiceMetric",
         "base": base,
         "dsets": dsets,
         "echo": echo,
@@ -154,45 +139,45 @@ def v__dice_metric_cargs(
     cargs.append("@DiceMetric")
     cargs.extend([
         "-base",
-        execution.input_file(params.get("base"))
+        execution.input_file(params.get("base", None))
     ])
     cargs.extend([
         "-dsets",
-        *[execution.input_file(f) for f in params.get("dsets")]
+        *[execution.input_file(f) for f in params.get("dsets", None)]
     ])
-    if params.get("max_roi") is not None:
+    if params.get("max_roi", None) is not None:
         cargs.extend([
             "-max_N_roi",
-            str(params.get("max_roi"))
+            str(params.get("max_roi", None))
         ])
-    if params.get("labeltable") is not None:
+    if params.get("labeltable", None) is not None:
         cargs.extend([
             "-labeltable",
-            execution.input_file(params.get("labeltable"))
+            execution.input_file(params.get("labeltable", None))
         ])
-    if params.get("forceoutput") is not None:
+    if params.get("forceoutput", None) is not None:
         cargs.extend([
             "-forceoutput",
-            execution.input_file(params.get("forceoutput"))
+            execution.input_file(params.get("forceoutput", None))
         ])
-    if params.get("echo"):
+    if params.get("echo", False):
         cargs.append("-echo")
-    if params.get("save_match"):
+    if params.get("save_match", False):
         cargs.append("-save_match")
-    if params.get("save_diff"):
+    if params.get("save_diff", False):
         cargs.append("-save_diff")
-    if params.get("do_not_mask_by_base"):
+    if params.get("do_not_mask_by_base", False):
         cargs.append("-do_not_mask_by_base")
-    if params.get("mask_by_base"):
+    if params.get("mask_by_base", False):
         cargs.append("-mask_by_base")
-    if params.get("prefix") is not None:
+    if params.get("prefix", None) is not None:
         cargs.extend([
             "-prefix",
-            params.get("prefix")
+            params.get("prefix", None)
         ])
-    if params.get("ignore_bad"):
+    if params.get("ignore_bad", False):
         cargs.append("-ignore_bad")
-    if params.get("keep_tmp"):
+    if params.get("keep_tmp", False):
         cargs.append("-keep_tmp")
     return cargs
 
@@ -218,9 +203,11 @@ def v__dice_metric_outputs(
 
 def v__dice_metric_execute(
     params: VDiceMetricParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VDiceMetricOutputs:
     """
+    @DiceMetric
+    
     Computes Dice Metric between BASE and each of the DSET volumes.
     
     Author: AFNI Developers
@@ -229,10 +216,12 @@ def v__dice_metric_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VDiceMetricOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__DICE_METRIC_METADATA)
     params = execution.params(params)
     cargs = v__dice_metric_cargs(params, execution)
     ret = v__dice_metric_outputs(params, execution)
@@ -257,6 +246,8 @@ def v__dice_metric(
     runner: Runner | None = None,
 ) -> VDiceMetricOutputs:
     """
+    @DiceMetric
+    
     Computes Dice Metric between BASE and each of the DSET volumes.
     
     Author: AFNI Developers
@@ -290,8 +281,6 @@ def v__dice_metric(
     Returns:
         NamedTuple of outputs (described in `VDiceMetricOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__DICE_METRIC_METADATA)
     params = v__dice_metric_params(
         base=base,
         dsets=dsets,
@@ -307,13 +296,13 @@ def v__dice_metric(
         ignore_bad=ignore_bad,
         keep_tmp=keep_tmp,
     )
-    return v__dice_metric_execute(params, execution)
+    return v__dice_metric_execute(params, runner)
 
 
 __all__ = [
     "VDiceMetricOutputs",
-    "VDiceMetricParameters",
     "V__DICE_METRIC_METADATA",
     "v__dice_metric",
+    "v__dice_metric_execute",
     "v__dice_metric_params",
 ]