niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/read_matlab_files_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 READ_MATLAB_FILES_PY_METADATA = Metadata(
-    id="d93c09c43aac0af7cf212aad65ea83ad160cf02e.boutiques",
+    id="b2992267cf3b556de790bd538f9e886b0ec131db.boutiques",
     name="read_matlab_files.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,16 @@ READ_MATLAB_FILES_PY_METADATA = Metadata(
 
 
 ReadMatlabFilesPyParameters = typing.TypedDict('ReadMatlabFilesPyParameters', {
-    "__STYXTYPE__": typing.Literal["read_matlab_files.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/read_matlab_files.py"]],
+    "infiles": list[str],
+    "prefix": typing.NotRequired[str | None],
+    "overwrite": bool,
+    "help": bool,
+    "history": bool,
+    "version": bool,
+})
+ReadMatlabFilesPyParametersTagged = typing.TypedDict('ReadMatlabFilesPyParametersTagged', {
+    "@type": typing.Literal["afni/read_matlab_files.py"],
     "infiles": list[str],
     "prefix": typing.NotRequired[str | None],
     "overwrite": bool,
@@ -22,43 +31,11 @@ ReadMatlabFilesPyParameters = typing.TypedDict('ReadMatlabFilesPyParameters', {
     "history": bool,
     "version": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "read_matlab_files.py": read_matlab_files_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "read_matlab_files.py": read_matlab_files_py_outputs,
-    }.get(t)
 
 
 class ReadMatlabFilesPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `read_matlab_files_py(...)`.
+    Output object returned when calling `ReadMatlabFilesPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -73,7 +50,7 @@ def read_matlab_files_py_params(
     help_: bool = False,
     history: bool = False,
     version: bool = False,
-) -> ReadMatlabFilesPyParameters:
+) -> ReadMatlabFilesPyParametersTagged:
     """
     Build parameters.
     
@@ -88,7 +65,7 @@ def read_matlab_files_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "read_matlab_files.py",
+        "@type": "afni/read_matlab_files.py",
         "infiles": infiles,
         "overwrite": overwrite,
         "help": help_,
@@ -115,19 +92,19 @@ def read_matlab_files_py_cargs(
     """
     cargs = []
     cargs.append("read_matlab_files.py")
-    cargs.extend(params.get("infiles"))
-    if params.get("prefix") is not None:
+    cargs.extend(params.get("infiles", None))
+    if params.get("prefix", None) is not None:
         cargs.extend([
             "-prefix",
-            params.get("prefix")
+            params.get("prefix", None)
         ])
-    if params.get("overwrite"):
+    if params.get("overwrite", False):
         cargs.append("-overwrite")
-    if params.get("help"):
+    if params.get("help", False):
         cargs.append("-help")
-    if params.get("history"):
+    if params.get("history", False):
         cargs.append("-hist")
-    if params.get("version"):
+    if params.get("version", False):
         cargs.append("-ver")
     return cargs
 
@@ -147,16 +124,18 @@ def read_matlab_files_py_outputs(
     """
     ret = ReadMatlabFilesPyOutputs(
         root=execution.output_file("."),
-        converted_1d_file=execution.output_file(params.get("prefix") + ".[INDEX].[KEY].1D") if (params.get("prefix") is not None) else None,
+        converted_1d_file=execution.output_file(params.get("prefix", None) + ".[INDEX].[KEY].1D") if (params.get("prefix") is not None) else None,
     )
     return ret
 
 
 def read_matlab_files_py_execute(
     params: ReadMatlabFilesPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> ReadMatlabFilesPyOutputs:
     """
+    read_matlab_files.py
+    
     Describe or convert MATLAB files (.mat) to 1D format.
     
     Author: AFNI Developers
@@ -165,10 +144,12 @@ def read_matlab_files_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `ReadMatlabFilesPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(READ_MATLAB_FILES_PY_METADATA)
     params = execution.params(params)
     cargs = read_matlab_files_py_cargs(params, execution)
     ret = read_matlab_files_py_outputs(params, execution)
@@ -186,6 +167,8 @@ def read_matlab_files_py(
     runner: Runner | None = None,
 ) -> ReadMatlabFilesPyOutputs:
     """
+    read_matlab_files.py
+    
     Describe or convert MATLAB files (.mat) to 1D format.
     
     Author: AFNI Developers
@@ -203,8 +186,6 @@ def read_matlab_files_py(
     Returns:
         NamedTuple of outputs (described in `ReadMatlabFilesPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(READ_MATLAB_FILES_PY_METADATA)
     params = read_matlab_files_py_params(
         infiles=infiles,
         prefix=prefix,
@@ -213,13 +194,13 @@ def read_matlab_files_py(
         history=history,
         version=version,
     )
-    return read_matlab_files_py_execute(params, execution)
+    return read_matlab_files_py_execute(params, runner)
 
 
 __all__ = [
     "READ_MATLAB_FILES_PY_METADATA",
     "ReadMatlabFilesPyOutputs",
-    "ReadMatlabFilesPyParameters",
     "read_matlab_files_py",
+    "read_matlab_files_py_execute",
     "read_matlab_files_py_params",
 ]

niwrap_afni/afni/{realtime_receiver.py → realtime_receiver_py.py}

@@ -5,16 +5,31 @@ import typing
 import pathlib
 from styxdefs import *
 
-REALTIME_RECEIVER_METADATA = Metadata(
-    id="3861e74ecb1900a71d5f24f43aeca5e7e336549d.boutiques",
-    name="realtime_receiver",
+REALTIME_RECEIVER_PY_METADATA = Metadata(
+    id="eb886e6e6cd896903b705e4bb02ee85f394bd4d4.boutiques",
+    name="realtime_receiver.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
 )
 
 
-RealtimeReceiverParameters = typing.TypedDict('RealtimeReceiverParameters', {
-    "__STYXTYPE__": typing.Literal["realtime_receiver"],
+RealtimeReceiverPyParameters = typing.TypedDict('RealtimeReceiverPyParameters', {
+    "@type": typing.NotRequired[typing.Literal["afni/realtime_receiver.py"]],
+    "show_data": typing.NotRequired[typing.Literal["yes", "no"] | None],
+    "write_text_data": typing.NotRequired[str | None],
+    "data_choice": typing.NotRequired[typing.Literal["motion", "motion_norm", "all_extras", "diff_ratio"] | None],
+    "serial_port": typing.NotRequired[str | None],
+    "show_demo_gui": typing.NotRequired[typing.Literal["yes", "no"] | None],
+    "dc_params": typing.NotRequired[list[float] | None],
+    "extras_on_one_line": typing.NotRequired[typing.Literal["yes", "no"] | None],
+    "show_comm_times": bool,
+    "show_demo_data": bool,
+    "swap": bool,
+    "tcp_port": typing.NotRequired[float | None],
+    "verbosity": typing.NotRequired[float | None],
+})
+RealtimeReceiverPyParametersTagged = typing.TypedDict('RealtimeReceiverPyParametersTagged', {
+    "@type": typing.Literal["afni/realtime_receiver.py"],
     "show_data": typing.NotRequired[typing.Literal["yes", "no"] | None],
     "write_text_data": typing.NotRequired[str | None],
     "data_choice": typing.NotRequired[typing.Literal["motion", "motion_norm", "all_extras", "diff_ratio"] | None],
@@ -30,46 +45,15 @@ RealtimeReceiverParameters = typing.TypedDict('RealtimeReceiverParameters', {
 })
 
 
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "realtime_receiver": realtime_receiver_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
-
-
-class RealtimeReceiverOutputs(typing.NamedTuple):
+class RealtimeReceiverPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `realtime_receiver(...)`.
+    Output object returned when calling `RealtimeReceiverPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
 
 
-def realtime_receiver_params(
+def realtime_receiver_py_params(
     show_data: typing.Literal["yes", "no"] | None = None,
     write_text_data: str | None = None,
     data_choice: typing.Literal["motion", "motion_norm", "all_extras", "diff_ratio"] | None = None,
@@ -82,7 +66,7 @@ def realtime_receiver_params(
     swap: bool = False,
     tcp_port: float | None = None,
     verbosity: float | None = None,
-) -> RealtimeReceiverParameters:
+) -> RealtimeReceiverPyParametersTagged:
     """
     Build parameters.
     
@@ -104,7 +88,7 @@ def realtime_receiver_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "realtime_receiver",
+        "@type": "afni/realtime_receiver.py",
         "show_comm_times": show_comm_times,
         "show_demo_data": show_demo_data,
         "swap": swap,
@@ -130,8 +114,8 @@ def realtime_receiver_params(
     return params
 
 
-def realtime_receiver_cargs(
-    params: RealtimeReceiverParameters,
+def realtime_receiver_py_cargs(
+    params: RealtimeReceiverPyParameters,
     execution: Execution,
 ) -> list[str]:
     """
@@ -145,64 +129,64 @@ def realtime_receiver_cargs(
     """
     cargs = []
     cargs.append("realtime_receiver.py")
-    if params.get("show_data") is not None:
+    if params.get("show_data", None) is not None:
         cargs.extend([
             "-show_data",
-            params.get("show_data")
+            params.get("show_data", None)
         ])
-    if params.get("write_text_data") is not None:
+    if params.get("write_text_data", None) is not None:
         cargs.extend([
             "-write_text_data",
-            params.get("write_text_data")
+            params.get("write_text_data", None)
         ])
-    if params.get("data_choice") is not None:
+    if params.get("data_choice", None) is not None:
         cargs.extend([
             "-data_choice",
-            params.get("data_choice")
+            params.get("data_choice", None)
         ])
-    if params.get("serial_port") is not None:
+    if params.get("serial_port", None) is not None:
         cargs.extend([
             "-serial_port",
-            params.get("serial_port")
+            params.get("serial_port", None)
         ])
-    if params.get("show_demo_gui") is not None:
+    if params.get("show_demo_gui", None) is not None:
         cargs.extend([
             "-show_demo_gui",
-            params.get("show_demo_gui")
+            params.get("show_demo_gui", None)
         ])
-    if params.get("dc_params") is not None:
+    if params.get("dc_params", None) is not None:
         cargs.extend([
             "-dc_params",
-            *map(str, params.get("dc_params"))
+            *map(str, params.get("dc_params", None))
         ])
-    if params.get("extras_on_one_line") is not None:
+    if params.get("extras_on_one_line", None) is not None:
         cargs.extend([
             "-extras_on_one_line",
-            params.get("extras_on_one_line")
+            params.get("extras_on_one_line", None)
         ])
-    if params.get("show_comm_times"):
+    if params.get("show_comm_times", False):
         cargs.append("-show_comm_times")
-    if params.get("show_demo_data"):
+    if params.get("show_demo_data", False):
         cargs.append("-show_demo_data")
-    if params.get("swap"):
+    if params.get("swap", False):
         cargs.append("-swap")
-    if params.get("tcp_port") is not None:
+    if params.get("tcp_port", None) is not None:
         cargs.extend([
             "-tcp_port",
-            str(params.get("tcp_port"))
+            str(params.get("tcp_port", None))
         ])
-    if params.get("verbosity") is not None:
+    if params.get("verbosity", None) is not None:
         cargs.extend([
             "-verb",
-            str(params.get("verbosity"))
+            str(params.get("verbosity", None))
         ])
     return cargs
 
 
-def realtime_receiver_outputs(
-    params: RealtimeReceiverParameters,
+def realtime_receiver_py_outputs(
+    params: RealtimeReceiverPyParameters,
     execution: Execution,
-) -> RealtimeReceiverOutputs:
+) -> RealtimeReceiverPyOutputs:
     """
     Build outputs object containing output file paths and possibly stdout/stderr.
     
@@ -212,17 +196,19 @@ def realtime_receiver_outputs(
     Returns:
         Outputs object.
     """
-    ret = RealtimeReceiverOutputs(
+    ret = RealtimeReceiverPyOutputs(
         root=execution.output_file("."),
     )
     return ret
 
 
-def realtime_receiver_execute(
-    params: RealtimeReceiverParameters,
-    execution: Execution,
-) -> RealtimeReceiverOutputs:
+def realtime_receiver_py_execute(
+    params: RealtimeReceiverPyParameters,
+    runner: Runner | None = None,
+) -> RealtimeReceiverPyOutputs:
     """
+    realtime_receiver.py
+    
     Program to receive and display real-time plugin data from AFNI.
     
     Author: AFNI Developers
@@ -231,18 +217,20 @@ def realtime_receiver_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
-        NamedTuple of outputs (described in `RealtimeReceiverOutputs`).
+        NamedTuple of outputs (described in `RealtimeReceiverPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(REALTIME_RECEIVER_PY_METADATA)
     params = execution.params(params)
-    cargs = realtime_receiver_cargs(params, execution)
-    ret = realtime_receiver_outputs(params, execution)
+    cargs = realtime_receiver_py_cargs(params, execution)
+    ret = realtime_receiver_py_outputs(params, execution)
     execution.run(cargs)
     return ret
 
 
-def realtime_receiver(
+def realtime_receiver_py(
     show_data: typing.Literal["yes", "no"] | None = None,
     write_text_data: str | None = None,
     data_choice: typing.Literal["motion", "motion_norm", "all_extras", "diff_ratio"] | None = None,
@@ -256,8 +244,10 @@ def realtime_receiver(
     tcp_port: float | None = None,
     verbosity: float | None = None,
     runner: Runner | None = None,
-) -> RealtimeReceiverOutputs:
+) -> RealtimeReceiverPyOutputs:
     """
+    realtime_receiver.py
+    
     Program to receive and display real-time plugin data from AFNI.
     
     Author: AFNI Developers
@@ -280,11 +270,9 @@ def realtime_receiver(
         verbosity: Set the verbosity level.
         runner: Command runner.
     Returns:
-        NamedTuple of outputs (described in `RealtimeReceiverOutputs`).
+        NamedTuple of outputs (described in `RealtimeReceiverPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(REALTIME_RECEIVER_METADATA)
-    params = realtime_receiver_params(
+    params = realtime_receiver_py_params(
         show_data=show_data,
         write_text_data=write_text_data,
         data_choice=data_choice,
@@ -298,13 +286,13 @@ def realtime_receiver(
         tcp_port=tcp_port,
         verbosity=verbosity,
     )
-    return realtime_receiver_execute(params, execution)
+    return realtime_receiver_py_execute(params, runner)
 
 
 __all__ = [
-    "REALTIME_RECEIVER_METADATA",
-    "RealtimeReceiverOutputs",
-    "RealtimeReceiverParameters",
-    "realtime_receiver",
-    "realtime_receiver_params",
+    "REALTIME_RECEIVER_PY_METADATA",
+    "RealtimeReceiverPyOutputs",
+    "realtime_receiver_py",
+    "realtime_receiver_py_execute",
+    "realtime_receiver_py_params",
 ]