niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/whirlgif.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 WHIRLGIF_METADATA = Metadata(
-    id="90ac51da8b1e5f7cdec9e864a32a24e4ccdb9243.boutiques",
+    id="8eebd0597ea2e7ffd5f6c2b4f3dadbb136dd4488.boutiques",
     name="whirlgif",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,17 @@ WHIRLGIF_METADATA = Metadata(
 
 
 WhirlgifParameters = typing.TypedDict('WhirlgifParameters', {
-    "__STYXTYPE__": typing.Literal["whirlgif"],
+    "@type": typing.NotRequired[typing.Literal["afni/whirlgif"]],
+    "verbose": bool,
+    "loop": typing.NotRequired[str | None],
+    "transparency_index": typing.NotRequired[float | None],
+    "inter_frame_delay": typing.NotRequired[float | None],
+    "outfile": typing.NotRequired[str | None],
+    "infile": typing.NotRequired[InputPathType | None],
+    "gif_files": list[InputPathType],
+})
+WhirlgifParametersTagged = typing.TypedDict('WhirlgifParametersTagged', {
+    "@type": typing.Literal["afni/whirlgif"],
     "verbose": bool,
     "loop": typing.NotRequired[str | None],
     "transparency_index": typing.NotRequired[float | None],
@@ -23,43 +33,11 @@ WhirlgifParameters = typing.TypedDict('WhirlgifParameters', {
     "infile": typing.NotRequired[InputPathType | None],
     "gif_files": list[InputPathType],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "whirlgif": whirlgif_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "whirlgif": whirlgif_outputs,
-    }.get(t)
 
 
 class WhirlgifOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `whirlgif(...)`.
+    Output object returned when calling `WhirlgifParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -75,7 +53,7 @@ def whirlgif_params(
     inter_frame_delay: float | None = None,
     outfile: str | None = None,
     infile: InputPathType | None = None,
-) -> WhirlgifParameters:
+) -> WhirlgifParametersTagged:
     """
     Build parameters.
     
@@ -92,7 +70,7 @@ def whirlgif_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "whirlgif",
+        "@type": "afni/whirlgif",
         "verbose": verbose,
         "gif_files": gif_files,
     }
@@ -124,34 +102,34 @@ def whirlgif_cargs(
     """
     cargs = []
     cargs.append("whirlgif")
-    if params.get("verbose"):
+    if params.get("verbose", False):
         cargs.append("-v")
-    if params.get("loop") is not None:
+    if params.get("loop", None) is not None:
         cargs.extend([
             "-loop",
-            params.get("loop")
+            params.get("loop", None)
         ])
-    if params.get("transparency_index") is not None:
+    if params.get("transparency_index", None) is not None:
         cargs.extend([
             "-trans",
-            str(params.get("transparency_index"))
+            str(params.get("transparency_index", None))
         ])
-    if params.get("inter_frame_delay") is not None:
+    if params.get("inter_frame_delay", None) is not None:
         cargs.extend([
             "-time",
-            str(params.get("inter_frame_delay"))
+            str(params.get("inter_frame_delay", None))
         ])
-    if params.get("outfile") is not None:
+    if params.get("outfile", None) is not None:
         cargs.extend([
             "-o",
-            params.get("outfile")
+            params.get("outfile", None)
         ])
-    if params.get("infile") is not None:
+    if params.get("infile", None) is not None:
         cargs.extend([
             "-i",
-            execution.input_file(params.get("infile"))
+            execution.input_file(params.get("infile", None))
         ])
-    cargs.extend([execution.input_file(f) for f in params.get("gif_files")])
+    cargs.extend([execution.input_file(f) for f in params.get("gif_files", None)])
     return cargs
 
 
@@ -170,18 +148,20 @@ def whirlgif_outputs(
     """
     ret = WhirlgifOutputs(
         root=execution.output_file("."),
-        output_gif=execution.output_file(params.get("outfile")) if (params.get("outfile") is not None) else None,
+        output_gif=execution.output_file(params.get("outfile", None)) if (params.get("outfile") is not None) else None,
     )
     return ret
 
 
 def whirlgif_execute(
     params: WhirlgifParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> WhirlgifOutputs:
     """
-    A quick program that reads a series of GIF files and produces a single GIF file
-    composed of those images.
+    whirlgif
+    
+    A quick program that reads a series of GIF files and produces a single GIF
+    file composed of those images.
     
     Author: AFNI Developers
     
@@ -189,10 +169,12 @@ def whirlgif_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `WhirlgifOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(WHIRLGIF_METADATA)
     params = execution.params(params)
     cargs = whirlgif_cargs(params, execution)
     ret = whirlgif_outputs(params, execution)
@@ -211,8 +193,10 @@ def whirlgif(
     runner: Runner | None = None,
 ) -> WhirlgifOutputs:
     """
-    A quick program that reads a series of GIF files and produces a single GIF file
-    composed of those images.
+    whirlgif
+    
+    A quick program that reads a series of GIF files and produces a single GIF
+    file composed of those images.
     
     Author: AFNI Developers
     
@@ -231,8 +215,6 @@ def whirlgif(
     Returns:
         NamedTuple of outputs (described in `WhirlgifOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(WHIRLGIF_METADATA)
     params = whirlgif_params(
         verbose=verbose,
         loop=loop,
@@ -242,13 +224,13 @@ def whirlgif(
         infile=infile,
         gif_files=gif_files,
     )
-    return whirlgif_execute(params, execution)
+    return whirlgif_execute(params, runner)
 
 
 __all__ = [
     "WHIRLGIF_METADATA",
     "WhirlgifOutputs",
-    "WhirlgifParameters",
     "whirlgif",
+    "whirlgif_execute",
     "whirlgif_params",
 ]

niwrap_afni/afni/xmat_tool_py.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 XMAT_TOOL_PY_METADATA = Metadata(
-    id="da417cb8611edbb7f8c8d5e21c61c76035319b7b.boutiques",
+    id="c4f4d93cb6f2d3928a755ef50fd462733504124e.boutiques",
     name="xmat_tool.py",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,7 +14,31 @@ XMAT_TOOL_PY_METADATA = Metadata(
 
 
 XmatToolPyParameters = typing.TypedDict('XmatToolPyParameters', {
-    "__STYXTYPE__": typing.Literal["xmat_tool.py"],
+    "@type": typing.NotRequired[typing.Literal["afni/xmat_tool.py"]],
+    "no_gui": bool,
+    "load_xmat": typing.NotRequired[InputPathType | None],
+    "load_1d": typing.NotRequired[InputPathType | None],
+    "choose_cols": typing.NotRequired[str | None],
+    "choose_nonzero_cols": bool,
+    "chrono": bool,
+    "cormat_cutoff": typing.NotRequired[float | None],
+    "cosmat_cutoff": typing.NotRequired[float | None],
+    "cosmat_motion": bool,
+    "verb": typing.NotRequired[float | None],
+    "show_col_types": bool,
+    "show_conds": bool,
+    "show_cormat": bool,
+    "show_cormat_warnings": bool,
+    "show_cosmat": bool,
+    "show_cosmat_warnings": bool,
+    "show_fit_betas": bool,
+    "show_fit_ts": bool,
+    "show_xmat": bool,
+    "show_1d": bool,
+    "gui_plot_xmat_as_one": bool,
+})
+XmatToolPyParametersTagged = typing.TypedDict('XmatToolPyParametersTagged', {
+    "@type": typing.Literal["afni/xmat_tool.py"],
     "no_gui": bool,
     "load_xmat": typing.NotRequired[InputPathType | None],
     "load_1d": typing.NotRequired[InputPathType | None],
@@ -37,43 +61,11 @@ XmatToolPyParameters = typing.TypedDict('XmatToolPyParameters', {
     "show_1d": bool,
     "gui_plot_xmat_as_one": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "xmat_tool.py": xmat_tool_py_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "xmat_tool.py": xmat_tool_py_outputs,
-    }.get(t)
 
 
 class XmatToolPyOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `xmat_tool_py(...)`.
+    Output object returned when calling `XmatToolPyParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -103,7 +95,7 @@ def xmat_tool_py_params(
     show_xmat: bool = False,
     show_1d: bool = False,
     gui_plot_xmat_as_one: bool = False,
-) -> XmatToolPyParameters:
+) -> XmatToolPyParametersTagged:
     """
     Build parameters.
     
@@ -133,7 +125,7 @@ def xmat_tool_py_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "xmat_tool.py",
+        "@type": "afni/xmat_tool.py",
         "no_gui": no_gui,
         "choose_nonzero_cols": choose_nonzero_cols,
         "chrono": chrono,
@@ -180,65 +172,65 @@ def xmat_tool_py_cargs(
     """
     cargs = []
     cargs.append("xmat_tool.py")
-    if params.get("no_gui"):
+    if params.get("no_gui", False):
         cargs.append("-no_gui")
-    if params.get("load_xmat") is not None:
+    if params.get("load_xmat", None) is not None:
         cargs.extend([
             "-load_xmat",
-            execution.input_file(params.get("load_xmat"))
+            execution.input_file(params.get("load_xmat", None))
         ])
-    if params.get("load_1d") is not None:
+    if params.get("load_1d", None) is not None:
         cargs.extend([
             "-load_1D",
-            execution.input_file(params.get("load_1d"))
+            execution.input_file(params.get("load_1d", None))
         ])
-    if params.get("choose_cols") is not None:
+    if params.get("choose_cols", None) is not None:
         cargs.extend([
             "-choose_cols",
-            params.get("choose_cols")
+            params.get("choose_cols", None)
         ])
-    if params.get("choose_nonzero_cols"):
+    if params.get("choose_nonzero_cols", False):
         cargs.append("-choose_nonzero_cols")
-    if params.get("chrono"):
+    if params.get("chrono", False):
         cargs.append("-chrono")
-    if params.get("cormat_cutoff") is not None:
+    if params.get("cormat_cutoff", None) is not None:
         cargs.extend([
             "-cormat_cutoff",
-            str(params.get("cormat_cutoff"))
+            str(params.get("cormat_cutoff", None))
         ])
-    if params.get("cosmat_cutoff") is not None:
+    if params.get("cosmat_cutoff", None) is not None:
         cargs.extend([
             "-cosmat_cutoff",
-            str(params.get("cosmat_cutoff"))
+            str(params.get("cosmat_cutoff", None))
         ])
-    if params.get("cosmat_motion"):
+    if params.get("cosmat_motion", False):
         cargs.append("-cosmat_motion")
-    if params.get("verb") is not None:
+    if params.get("verb", None) is not None:
         cargs.extend([
             "-verb",
-            str(params.get("verb"))
+            str(params.get("verb", None))
         ])
-    if params.get("show_col_types"):
+    if params.get("show_col_types", False):
         cargs.append("-show_col_types")
-    if params.get("show_conds"):
+    if params.get("show_conds", False):
         cargs.append("-show_conds")
-    if params.get("show_cormat"):
+    if params.get("show_cormat", False):
         cargs.append("-show_cormat")
-    if params.get("show_cormat_warnings"):
+    if params.get("show_cormat_warnings", False):
         cargs.append("-show_cormat_warnings")
-    if params.get("show_cosmat"):
+    if params.get("show_cosmat", False):
         cargs.append("-show_cosmat")
-    if params.get("show_cosmat_warnings"):
+    if params.get("show_cosmat_warnings", False):
         cargs.append("-show_cosmat_warnings")
-    if params.get("show_fit_betas"):
+    if params.get("show_fit_betas", False):
         cargs.append("-show_fit_betas")
-    if params.get("show_fit_ts"):
+    if params.get("show_fit_ts", False):
         cargs.append("-show_fit_ts")
-    if params.get("show_xmat"):
+    if params.get("show_xmat", False):
         cargs.append("-show_xmat")
-    if params.get("show_1d"):
+    if params.get("show_1d", False):
         cargs.append("-show_1D")
-    if params.get("gui_plot_xmat_as_one"):
+    if params.get("gui_plot_xmat_as_one", False):
         cargs.append("-gui_plot_xmat_as_one")
     return cargs
 
@@ -265,9 +257,11 @@ def xmat_tool_py_outputs(
 
 def xmat_tool_py_execute(
     params: XmatToolPyParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> XmatToolPyOutputs:
     """
+    xmat_tool.py
+    
     A tool for evaluating an AFNI X-matrix.
     
     Author: AFNI Developers
@@ -276,10 +270,12 @@ def xmat_tool_py_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `XmatToolPyOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(XMAT_TOOL_PY_METADATA)
     params = execution.params(params)
     cargs = xmat_tool_py_cargs(params, execution)
     ret = xmat_tool_py_outputs(params, execution)
@@ -312,6 +308,8 @@ def xmat_tool_py(
     runner: Runner | None = None,
 ) -> XmatToolPyOutputs:
     """
+    xmat_tool.py
+    
     A tool for evaluating an AFNI X-matrix.
     
     Author: AFNI Developers
@@ -344,8 +342,6 @@ def xmat_tool_py(
     Returns:
         NamedTuple of outputs (described in `XmatToolPyOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(XMAT_TOOL_PY_METADATA)
     params = xmat_tool_py_params(
         no_gui=no_gui,
         load_xmat=load_xmat,
@@ -369,13 +365,13 @@ def xmat_tool_py(
         show_1d=show_1d,
         gui_plot_xmat_as_one=gui_plot_xmat_as_one,
     )
-    return xmat_tool_py_execute(params, execution)
+    return xmat_tool_py_execute(params, runner)
 
 
 __all__ = [
     "XMAT_TOOL_PY_METADATA",
     "XmatToolPyOutputs",
-    "XmatToolPyParameters",
     "xmat_tool_py",
+    "xmat_tool_py_execute",
     "xmat_tool_py_params",
 ]

niwrap_afni-0.7.0.dist-info/METADATA

@@ -0,0 +1,8 @@
+Metadata-Version: 2.4
+Name: niwrap-afni
+Version: 0.7.0
+Summary: Neuroimaging wrappers.
+Author: CMI DAIR
+License-Expression: MIT
+Requires-Dist: styxdefs>=0.5.0,<0.6.0
+Requires-Python: >=3.10