niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- niwrap_afni/afni/__init__.py +601 -18
- niwrap_afni/afni/abids_json_info_py.py +35 -51
- niwrap_afni/afni/abids_json_tool_py.py +48 -59
- niwrap_afni/afni/{abids_tool.py → abids_tool_py.py} +60 -78
- niwrap_afni/afni/adjunct_apqc_tsnr_general.py +83 -84
- niwrap_afni/afni/adjunct_aw_tableize_roi_info_py.py +31 -50
- niwrap_afni/afni/adjunct_calc_mont_dims_py.py +20 -43
- niwrap_afni/afni/adjunct_combine_str_py.py +29 -51
- niwrap_afni/afni/adjunct_is_label_py.py +22 -44
- niwrap_afni/afni/adjunct_make_script_and_rst_py.py +35 -55
- niwrap_afni/afni/adjunct_select_str_py.py +24 -45
- niwrap_afni/afni/{adjunct_simplify_cost.py → adjunct_simplify_cost_py.py} +49 -70
- niwrap_afni/afni/adjunct_suma_fs_mask_and_qc.py +36 -55
- niwrap_afni/afni/adjunct_suma_fs_roi_info.py +28 -48
- niwrap_afni/afni/adjunct_tort_plot_dp_align.py +38 -58
- niwrap_afni/afni/adwarp.py +43 -59
- niwrap_afni/afni/afni.py +77 -77
- niwrap_afni/afni/afni_batch_r.py +28 -47
- niwrap_afni/afni/afni_check_omp.py +21 -44
- niwrap_afni/afni/afni_history.py +72 -75
- niwrap_afni/afni/afni_open.py +49 -58
- niwrap_afni/afni/afni_proc_py.py +50 -64
- niwrap_afni/afni/afni_run_r.py +22 -44
- niwrap_afni/afni/afni_system_check_py.py +43 -57
- niwrap_afni/afni/aiv.py +33 -51
- niwrap_afni/afni/{align_epi_anat.py → align_epi_anat_py.py} +84 -92
- niwrap_afni/afni/analyze_trace.py +48 -61
- niwrap_afni/afni/{ap_run_simple_rest.py → ap_run_simple_rest_tcsh.py} +72 -90
- niwrap_afni/afni/{apqc_make_html.py → apqc_make_html_py.py} +45 -68
- niwrap_afni/afni/apqc_make_tcsh_py.py +34 -53
- niwrap_afni/afni/apsearch.py +26 -48
- niwrap_afni/afni/auto_warp_py.py +98 -89
- niwrap_afni/afni/balloon.py +33 -51
- niwrap_afni/afni/bayes_view.py +29 -50
- niwrap_afni/afni/bayesian_group_ana_py.py +57 -68
- niwrap_afni/afni/brain_skin.py +64 -76
- niwrap_afni/afni/build_afni_py.py +62 -71
- niwrap_afni/afni/cat_matvec.py +26 -46
- niwrap_afni/afni/ccalc.py +23 -45
- niwrap_afni/afni/cifti_tool.py +42 -58
- niwrap_afni/afni/cjpeg.py +34 -52
- niwrap_afni/afni/clust_exp_hist_table_py.py +33 -54
- niwrap_afni/afni/clust_exp_stat_parse_py.py +57 -69
- niwrap_afni/afni/column_cat.py +32 -54
- niwrap_afni/afni/compare_surfaces.py +58 -68
- niwrap_afni/afni/{convert_cdiflist_to_grads.py → convert_cdiflist_to_grads_py.py} +60 -78
- niwrap_afni/afni/convert_dset.py +73 -77
- niwrap_afni/afni/convert_surface.py +47 -62
- niwrap_afni/afni/convex_hull.py +68 -77
- niwrap_afni/afni/count.py +56 -66
- niwrap_afni/afni/create_icosahedron.py +44 -58
- niwrap_afni/afni/dcm2niix_afni.py +102 -98
- niwrap_afni/afni/dicom_hdr.py +39 -53
- niwrap_afni/afni/dicom_hinfo.py +31 -49
- niwrap_afni/afni/dicom_to_raw.py +21 -45
- niwrap_afni/afni/dimon.py +45 -64
- niwrap_afni/afni/djpeg.py +34 -52
- niwrap_afni/afni/drive_suma.py +99 -92
- niwrap_afni/afni/dsetstat2p.py +30 -49
- niwrap_afni/afni/dtistudio_fiberto_segments.py +26 -48
- niwrap_afni/afni/{epi_b0_correct.py → epi_b0_correct_py.py} +110 -111
- niwrap_afni/afni/examine_xmat.py +45 -62
- niwrap_afni/afni/fat_mat2d_plot_py.py +88 -86
- niwrap_afni/afni/fat_mat_sel_py.py +87 -89
- niwrap_afni/afni/{fat_mat_tableize.py → fat_mat_tableize_py.py} +72 -87
- niwrap_afni/afni/fat_mvm_gridconv_py.py +24 -51
- niwrap_afni/afni/{fat_mvm_prep.py → fat_mvm_prep_py.py} +61 -79
- niwrap_afni/afni/fat_mvm_scripter_py.py +53 -65
- niwrap_afni/afni/fat_proc_align_anat_pair.py +50 -63
- niwrap_afni/afni/fat_proc_axialize_anat.py +76 -79
- niwrap_afni/afni/fat_proc_connec_vis.py +56 -70
- niwrap_afni/afni/fat_proc_convert_dcm_anat.py +44 -59
- niwrap_afni/afni/fat_proc_convert_dcm_dwis.py +74 -79
- niwrap_afni/afni/fat_proc_decmap.py +51 -65
- niwrap_afni/afni/fat_proc_dwi_to_dt.py +94 -93
- niwrap_afni/afni/fat_proc_filter_dwis.py +47 -61
- niwrap_afni/afni/fat_proc_imit2w_from_t1w.py +41 -62
- niwrap_afni/afni/fat_proc_map_to_dti.py +53 -65
- niwrap_afni/afni/fat_proc_select_vols.py +38 -55
- niwrap_afni/afni/{fat_roi_row.py → fat_roi_row_py.py} +58 -79
- niwrap_afni/afni/fatcat_matplot.py +22 -44
- niwrap_afni/afni/fdrval.py +34 -51
- niwrap_afni/afni/fftest.py +26 -46
- niwrap_afni/afni/file_tool.py +111 -94
- niwrap_afni/afni/fim2.py +85 -87
- niwrap_afni/afni/{find_variance_lines.py → find_variance_lines_tcsh.py} +90 -109
- niwrap_afni/afni/firdesign.py +33 -51
- niwrap_afni/afni/float_scan.py +27 -48
- niwrap_afni/afni/from3d.py +42 -60
- niwrap_afni/afni/fsread_annot.py +52 -66
- niwrap_afni/afni/gen_epi_review_py.py +47 -61
- niwrap_afni/afni/{gen_group_command.py → gen_group_command_py.py} +82 -95
- niwrap_afni/afni/{gen_ss_review_scripts.py → gen_ss_review_scripts_py.py} +100 -106
- niwrap_afni/afni/gen_ss_review_table_py.py +55 -66
- niwrap_afni/afni/get_afni_model_prf.py +26 -46
- niwrap_afni/afni/get_afni_model_prf_6.py +32 -49
- niwrap_afni/afni/get_afni_model_prf_6_bad.py +30 -48
- niwrap_afni/afni/gifti_tool.py +77 -80
- niwrap_afni/afni/gltsymtest.py +28 -49
- niwrap_afni/afni/help_format.py +20 -44
- niwrap_afni/afni/im2niml.py +24 -48
- niwrap_afni/afni/images_equal.py +24 -46
- niwrap_afni/afni/imand.py +30 -52
- niwrap_afni/afni/imaver.py +32 -54
- niwrap_afni/afni/imcalc.py +30 -51
- niwrap_afni/afni/imcat.py +89 -87
- niwrap_afni/afni/imcutup.py +35 -55
- niwrap_afni/afni/imdump.py +20 -44
- niwrap_afni/afni/immask.py +35 -53
- niwrap_afni/afni/imreg.py +70 -75
- niwrap_afni/afni/imrotate.py +33 -51
- niwrap_afni/afni/imstack.py +28 -50
- niwrap_afni/afni/imstat.py +29 -50
- niwrap_afni/afni/imupsam.py +27 -48
- niwrap_afni/afni/init_user_dotfiles_py.py +59 -66
- niwrap_afni/afni/inspec.py +37 -54
- niwrap_afni/afni/iso_surface.py +56 -67
- niwrap_afni/afni/make_color_map.py +77 -82
- niwrap_afni/afni/make_pq_script_py.py +27 -48
- niwrap_afni/afni/make_random_timing_py.py +85 -88
- niwrap_afni/afni/make_stim_times_py.py +49 -62
- niwrap_afni/afni/map_icosahedron.py +51 -62
- niwrap_afni/afni/map_track_id.py +35 -52
- niwrap_afni/afni/mba.py +62 -72
- niwrap_afni/afni/meica_py.py +38 -55
- niwrap_afni/afni/myget.py +26 -48
- niwrap_afni/afni/neuro_deconvolve_py.py +51 -66
- niwrap_afni/afni/nicat.py +27 -47
- niwrap_afni/afni/niccc.py +50 -63
- niwrap_afni/afni/nifti_tool.py +52 -65
- niwrap_afni/afni/niml_feedme.py +36 -53
- niwrap_afni/afni/nsize.py +23 -46
- niwrap_afni/afni/p2dsetstat.py +34 -51
- niwrap_afni/afni/parse_fs_lt_log_py.py +29 -48
- niwrap_afni/afni/plugout_drive.py +56 -65
- niwrap_afni/afni/plugout_ijk.py +46 -59
- niwrap_afni/afni/plugout_tt.py +48 -60
- niwrap_afni/afni/plugout_tta.py +49 -63
- niwrap_afni/afni/prompt_popup.py +35 -53
- niwrap_afni/afni/prompt_user.py +26 -47
- niwrap_afni/afni/pta.py +44 -61
- niwrap_afni/afni/qdelaunay.py +100 -91
- niwrap_afni/afni/qhull.py +63 -67
- niwrap_afni/afni/quick_alpha_vals_py.py +23 -46
- niwrap_afni/afni/quickspec.py +41 -59
- niwrap_afni/afni/quickspec_sl.py +46 -63
- niwrap_afni/afni/quotize.py +25 -47
- niwrap_afni/afni/r_pkgs_install.py +30 -50
- niwrap_afni/afni/rba.py +93 -92
- niwrap_afni/afni/rbox.py +68 -71
- niwrap_afni/afni/read_matlab_files_py.py +32 -51
- niwrap_afni/afni/{realtime_receiver.py → realtime_receiver_py.py} +76 -88
- niwrap_afni/afni/retro_ts_py.py +84 -84
- niwrap_afni/afni/rmz.py +27 -47
- niwrap_afni/afni/roi2dataset.py +47 -60
- niwrap_afni/afni/roigrow.py +38 -55
- niwrap_afni/afni/rotcom.py +27 -50
- niwrap_afni/afni/rsfgen.py +53 -65
- niwrap_afni/afni/rtfeedme.py +47 -60
- niwrap_afni/afni/samp_bias.py +42 -60
- niwrap_afni/afni/scale_to_map.py +98 -90
- niwrap_afni/afni/serial_helper.py +48 -60
- niwrap_afni/afni/sfim.py +31 -54
- niwrap_afni/afni/slow_surf_clustsim_py.py +44 -57
- niwrap_afni/afni/spharm_deco.py +47 -68
- niwrap_afni/afni/spharm_reco.py +38 -54
- niwrap_afni/afni/stimband.py +34 -53
- niwrap_afni/afni/strblast.py +38 -55
- niwrap_afni/afni/suma_change_spec.py +34 -53
- niwrap_afni/afni/suma_glxdino.py +24 -47
- niwrap_afni/afni/surf2_vol_coord.py +46 -60
- niwrap_afni/afni/surf_clust.py +113 -99
- niwrap_afni/afni/surf_dist.py +37 -54
- niwrap_afni/afni/surf_dset_info.py +59 -64
- niwrap_afni/afni/surf_extrema.py +43 -60
- niwrap_afni/afni/surf_fwhm.py +59 -70
- niwrap_afni/afni/surf_info.py +67 -72
- niwrap_afni/afni/surf_layers.py +49 -70
- niwrap_afni/afni/surf_localstat.py +33 -52
- niwrap_afni/afni/surf_measures.py +64 -71
- niwrap_afni/afni/surf_mesh.py +37 -54
- niwrap_afni/afni/surf_patch.py +68 -72
- niwrap_afni/afni/surf_qual.py +38 -57
- niwrap_afni/afni/surf_retino_map.py +32 -52
- niwrap_afni/afni/surf_smooth.py +63 -72
- niwrap_afni/afni/surf_to_surf.py +55 -67
- niwrap_afni/afni/surface_metrics.py +68 -69
- niwrap_afni/afni/tedana_wrapper_py.py +51 -63
- niwrap_afni/afni/tfim.py +39 -57
- niwrap_afni/afni/timing_tool_py.py +72 -78
- niwrap_afni/afni/to3d.py +125 -110
- niwrap_afni/afni/tokens.py +24 -46
- niwrap_afni/afni/trr.py +70 -77
- niwrap_afni/afni/uber_align_test_py.py +41 -55
- niwrap_afni/afni/uber_proc_py.py +21 -44
- niwrap_afni/afni/{uber_skel.py → uber_skel_py.py} +72 -85
- niwrap_afni/afni/uber_subject_py.py +143 -124
- niwrap_afni/afni/un_warp_epi_py.py +34 -50
- niwrap_afni/afni/uniq_images.py +26 -50
- niwrap_afni/afni/v_1d_apar2mat.py +42 -54
- niwrap_afni/afni/v_1d_astrip.py +20 -44
- niwrap_afni/afni/v_1d_bandpass.py +34 -51
- niwrap_afni/afni/v_1d_bport.py +47 -60
- niwrap_afni/afni/v_1d_correlate.py +42 -57
- niwrap_afni/afni/v_1d_dw_grad_o_mat__.py +72 -76
- niwrap_afni/afni/v_1d_flag_motion.py +30 -52
- niwrap_afni/afni/v_1d_marry.py +25 -47
- niwrap_afni/afni/v_1d_nlfit.py +29 -49
- niwrap_afni/afni/v_1d_rplot.py +72 -78
- niwrap_afni/afni/v_1d_sem.py +60 -69
- niwrap_afni/afni/v_1d_tool_py.py +53 -65
- niwrap_afni/afni/v_1d_tsort.py +31 -49
- niwrap_afni/afni/v_1d_upsample.py +24 -46
- niwrap_afni/afni/v_1dcat.py +38 -54
- niwrap_afni/afni/v_1ddot.py +34 -51
- niwrap_afni/afni/v_1deval.py +44 -61
- niwrap_afni/afni/v_1dfft.py +40 -56
- niwrap_afni/afni/v_1dgen_arma11.py +57 -70
- niwrap_afni/afni/v_1dgrayplot.py +38 -53
- niwrap_afni/afni/v_1dmatcalc.py +25 -49
- niwrap_afni/afni/v_1dnorm.py +31 -50
- niwrap_afni/afni/v_1dplot.py +191 -155
- niwrap_afni/afni/v_1dplot_py.py +110 -103
- niwrap_afni/afni/v_1dsound.py +44 -58
- niwrap_afni/afni/v_1dsum.py +36 -53
- niwrap_afni/afni/v_1dsvd.py +45 -59
- niwrap_afni/afni/v_1dtranspose.py +24 -47
- niwrap_afni/afni/v_24swap.py +25 -46
- niwrap_afni/afni/v_2d_im_reg.py +55 -68
- niwrap_afni/afni/v_2dcat.py +86 -86
- niwrap_afni/afni/v_2perm.py +35 -54
- niwrap_afni/afni/v_2swap.py +22 -44
- niwrap_afni/afni/v_3d_aboverlap.py +32 -51
- niwrap_afni/afni/v_3d_acost.py +28 -49
- niwrap_afni/afni/v_3d_afnito3_d.py +28 -49
- niwrap_afni/afni/v_3d_afnito_analyze.py +31 -52
- niwrap_afni/afni/v_3d_afnito_nifti.py +36 -53
- niwrap_afni/afni/v_3d_afnito_niml.py +27 -47
- niwrap_afni/afni/v_3d_afnito_raw.py +25 -46
- niwrap_afni/afni/v_3d_allineate.py +63 -74
- niwrap_afni/afni/v_3d_amp_to_rsfc.py +39 -58
- niwrap_afni/afni/v_3d_anhist.py +41 -56
- niwrap_afni/afni/v_3d_anova.py +64 -75
- niwrap_afni/afni/v_3d_anova2.py +101 -100
- niwrap_afni/afni/v_3d_anova3.py +138 -126
- niwrap_afni/afni/v_3d_attribute.py +40 -55
- niwrap_afni/afni/v_3d_auto_tcorrelate.py +52 -64
- niwrap_afni/afni/v_3d_autobox.py +56 -66
- niwrap_afni/afni/v_3d_automask.py +40 -58
- niwrap_afni/afni/v_3d_ball_match.py +38 -56
- niwrap_afni/afni/v_3d_bandpass.py +66 -74
- niwrap_afni/afni/v_3d_blur_in_mask.py +45 -59
- niwrap_afni/afni/v_3d_blur_to_fwhm.py +41 -58
- niwrap_afni/afni/v_3d_brain_sync.py +40 -58
- niwrap_afni/afni/v_3d_brain_voyagerto_afni.py +52 -63
- niwrap_afni/afni/v_3d_brick_stat.py +83 -78
- niwrap_afni/afni/v_3d_clip_level.py +32 -52
- niwrap_afni/afni/v_3d_clust_count.py +30 -51
- niwrap_afni/afni/v_3d_clust_sim.py +85 -88
- niwrap_afni/afni/v_3d_clusterize.py +81 -82
- niwrap_afni/afni/v_3d_cm.py +43 -59
- niwrap_afni/afni/v_3d_compare_affine.py +31 -53
- niwrap_afni/afni/v_3d_conformist.py +24 -46
- niwrap_afni/afni/v_3d_convolve.py +26 -48
- niwrap_afni/afni/v_3d_cruiseto_afni.py +48 -60
- niwrap_afni/afni/v_3d_deconvolve.py +68 -78
- niwrap_afni/afni/v_3d_degree_centrality.py +49 -66
- niwrap_afni/afni/v_3d_depth_map.py +53 -65
- niwrap_afni/afni/v_3d_despike.py +28 -51
- niwrap_afni/afni/v_3d_detrend.py +24 -47
- niwrap_afni/afni/v_3d_dft.py +40 -58
- niwrap_afni/afni/v_3d_diff.py +37 -54
- niwrap_afni/afni/v_3d_dteig.py +35 -55
- niwrap_afni/afni/v_3d_dtto_dwi.py +37 -54
- niwrap_afni/afni/v_3d_dtto_noisy_dwi.py +45 -60
- niwrap_afni/afni/v_3d_dwito_dt.py +84 -86
- niwrap_afni/afni/v_3d_dwuncert.py +43 -59
- niwrap_afni/afni/v_3d_ecm.py +65 -73
- niwrap_afni/afni/v_3d_edu_01_scale.py +28 -53
- niwrap_afni/afni/v_3d_eigs_to_dt.py +38 -55
- niwrap_afni/afni/v_3d_empty.py +31 -52
- niwrap_afni/afni/v_3d_entropy.py +22 -44
- niwrap_afni/afni/v_3d_errts_cormat.py +39 -58
- niwrap_afni/afni/v_3d_exchange.py +30 -50
- niwrap_afni/afni/v_3d_extract_group_in_corr.py +28 -51
- niwrap_afni/afni/v_3d_extrema.py +67 -72
- niwrap_afni/afni/v_3d_fdr.py +54 -65
- niwrap_afni/afni/v_3d_fft.py +52 -65
- niwrap_afni/afni/v_3d_friedman.py +30 -53
- niwrap_afni/afni/v_3d_fwhmx.py +51 -63
- niwrap_afni/afni/v_3d_gen_feature_dist.py +50 -63
- niwrap_afni/afni/v_3d_gen_priors.py +87 -86
- niwrap_afni/afni/v_3d_getrow.py +34 -54
- niwrap_afni/afni/v_3d_grayplot.py +58 -69
- niwrap_afni/afni/v_3d_group_in_corr.py +87 -84
- niwrap_afni/afni/v_3d_hist.py +74 -78
- niwrap_afni/afni/v_3d_icc.py +55 -66
- niwrap_afni/afni/v_3d_intracranial.py +41 -57
- niwrap_afni/afni/v_3d_inv_fmri.py +48 -62
- niwrap_afni/afni/v_3d_isc.py +43 -59
- niwrap_afni/afni/v_3d_kruskal_wallis.py +31 -51
- niwrap_afni/afni/v_3d_lfcd.py +47 -63
- niwrap_afni/afni/v_3d_lme.py +97 -92
- niwrap_afni/afni/v_3d_lmer.py +77 -80
- niwrap_afni/afni/v_3d_local_acf.py +35 -55
- niwrap_afni/afni/v_3d_local_bistat.py +50 -63
- niwrap_afni/afni/v_3d_local_histog.py +46 -61
- niwrap_afni/afni/v_3d_local_pv.py +50 -64
- niwrap_afni/afni/v_3d_local_svd.py +38 -54
- niwrap_afni/afni/v_3d_local_unifize.py +46 -62
- niwrap_afni/afni/v_3d_localstat.py +76 -81
- niwrap_afni/afni/v_3d_lomb_scargle.py +42 -59
- niwrap_afni/afni/v_3d_lrflip.py +35 -55
- niwrap_afni/afni/v_3d_lss.py +39 -56
- niwrap_afni/afni/v_3d_mann_whitney.py +30 -54
- niwrap_afni/afni/v_3d_mask_to_ascii.py +25 -47
- niwrap_afni/afni/v_3d_match.py +49 -65
- niwrap_afni/afni/v_3d_mean.py +64 -70
- niwrap_afni/afni/v_3d_median_filter.py +39 -58
- niwrap_afni/afni/v_3d_mema.py +89 -87
- niwrap_afni/afni/v_3d_mepfm.py +43 -63
- niwrap_afni/afni/v_3d_mse.py +44 -60
- niwrap_afni/afni/v_3d_mss.py +66 -73
- niwrap_afni/afni/v_3d_multi_thresh.py +47 -61
- niwrap_afni/afni/v_3d_mvm.py +62 -72
- niwrap_afni/afni/v_3d_mvm_validator.py +23 -49
- niwrap_afni/afni/v_3d_net_corr.py +67 -72
- niwrap_afni/afni/v_3d_nlfim.py +134 -122
- niwrap_afni/afni/v_3d_normality_test.py +27 -48
- niwrap_afni/afni/v_3d_notes.py +36 -53
- niwrap_afni/afni/v_3d_nwarp_adjust.py +34 -56
- niwrap_afni/afni/v_3d_nwarp_apply.py +59 -73
- niwrap_afni/afni/v_3d_nwarp_cat.py +42 -58
- niwrap_afni/afni/v_3d_nwarp_funcs.py +35 -54
- niwrap_afni/afni/v_3d_nwarp_xyz.py +31 -52
- niwrap_afni/afni/v_3d_overlap.py +27 -49
- niwrap_afni/afni/{v_3d_par2_afni.py → v_3d_par2_afni_pl.py} +65 -80
- niwrap_afni/afni/v_3d_periodogram.py +35 -56
- niwrap_afni/afni/v_3d_pfm.py +62 -72
- niwrap_afni/afni/v_3d_polyfit.py +62 -73
- niwrap_afni/afni/v_3d_pval.py +32 -51
- niwrap_afni/afni/v_3d_pvmap.py +31 -52
- niwrap_afni/afni/v_3d_qwarp.py +64 -67
- niwrap_afni/afni/v_3d_rank.py +30 -51
- niwrap_afni/afni/v_3d_rankizer.py +37 -56
- niwrap_afni/afni/v_3d_re_ho.py +65 -76
- niwrap_afni/afni/v_3d_reg_ana.py +58 -68
- niwrap_afni/afni/v_3d_remlfit.py +64 -74
- niwrap_afni/afni/v_3d_retino_phase.py +71 -80
- niwrap_afni/afni/{v_3_droimaker.py → v_3d_roimaker.py} +100 -105
- niwrap_afni/afni/v_3d_roistats.py +52 -62
- niwrap_afni/afni/v_3d_row_fillin.py +33 -53
- niwrap_afni/afni/v_3d_rprog_demo.py +43 -57
- niwrap_afni/afni/v_3d_rsfc.py +78 -79
- niwrap_afni/afni/v_3d_seg.py +80 -86
- niwrap_afni/afni/v_3d_setup_group_in_corr.py +46 -60
- niwrap_afni/afni/v_3d_sharpen.py +30 -52
- niwrap_afni/afni/v_3d_signatures.py +33 -52
- niwrap_afni/afni/v_3d_skull_strip.py +27 -49
- niwrap_afni/afni/v_3d_slice_ndice.py +36 -54
- niwrap_afni/afni/v_3d_space_time_corr.py +36 -54
- niwrap_afni/afni/v_3d_spat_norm.py +40 -56
- niwrap_afni/afni/v_3d_stat_clust.py +44 -60
- niwrap_afni/afni/v_3d_surf2_vol.py +84 -87
- niwrap_afni/afni/v_3d_surf_mask.py +44 -60
- niwrap_afni/afni/v_3d_synthesize.py +34 -51
- niwrap_afni/afni/v_3d_tagalign.py +54 -64
- niwrap_afni/afni/v_3d_tcat.py +34 -53
- niwrap_afni/afni/v_3d_tcorr1_d.py +40 -57
- niwrap_afni/afni/v_3d_tcorr_map.py +66 -73
- niwrap_afni/afni/v_3d_tcorrelate.py +59 -68
- niwrap_afni/afni/v_3d_tfilter.py +29 -51
- niwrap_afni/afni/v_3d_tfitter.py +71 -78
- niwrap_afni/afni/v_3d_threeto_rgb.py +41 -58
- niwrap_afni/afni/v_3d_tnorm.py +37 -54
- niwrap_afni/afni/v_3d_tortoiseto_here.py +36 -55
- niwrap_afni/afni/v_3d_toutcount.py +44 -59
- niwrap_afni/afni/v_3d_toy_prog.py +54 -62
- niwrap_afni/afni/v_3d_tproject.py +77 -83
- niwrap_afni/afni/v_3d_tqual.py +36 -53
- niwrap_afni/afni/v_3d_track_id.py +139 -120
- niwrap_afni/afni/v_3d_trfix.py +33 -53
- niwrap_afni/afni/v_3d_tsgen.py +55 -66
- niwrap_afni/afni/v_3d_tshift.py +59 -71
- niwrap_afni/afni/v_3d_tsmooth.py +58 -69
- niwrap_afni/afni/v_3d_tsort.py +43 -57
- niwrap_afni/afni/v_3d_tsplit4_d.py +27 -51
- niwrap_afni/afni/v_3d_tstat.py +151 -115
- niwrap_afni/afni/v_3d_tto1_d.py +34 -53
- niwrap_afni/afni/v_3d_twoto_complex.py +35 -54
- niwrap_afni/afni/v_3d_undump.py +65 -72
- niwrap_afni/afni/v_3d_unifize.py +56 -67
- niwrap_afni/afni/v_3d_upsample.py +34 -53
- niwrap_afni/afni/v_3d_vec_rgb_to_hsl.py +33 -54
- niwrap_afni/afni/v_3d_vol2_surf.py +125 -108
- niwrap_afni/afni/v_3d_warp.py +71 -73
- niwrap_afni/afni/v_3d_warp_drive.py +108 -95
- niwrap_afni/afni/v_3d_wilcoxon.py +35 -53
- niwrap_afni/afni/v_3d_winsor.py +45 -61
- niwrap_afni/afni/v_3d_xclust_sim.py +64 -74
- niwrap_afni/afni/v_3d_xyzcat.py +30 -51
- niwrap_afni/afni/v_3d_zcat.py +36 -54
- niwrap_afni/afni/v_3d_zcutup.py +27 -49
- niwrap_afni/afni/v_3d_zeropad.py +62 -72
- niwrap_afni/afni/v_3d_zipper_zapper.py +63 -72
- niwrap_afni/afni/v_3d_zregrid.py +36 -55
- niwrap_afni/afni/v_3danisosmooth.py +72 -75
- niwrap_afni/afni/v_3daxialize.py +41 -56
- niwrap_afni/afni/v_3dbucket.py +43 -57
- niwrap_afni/afni/v_3dcalc.py +46 -61
- niwrap_afni/afni/v_3dclust.py +64 -69
- niwrap_afni/afni/v_3dcopy.py +32 -49
- niwrap_afni/afni/v_3ddelay.py +83 -84
- niwrap_afni/afni/v_3ddot.py +50 -60
- niwrap_afni/afni/v_3ddot_beta.py +28 -49
- niwrap_afni/afni/v_3dedge3.py +40 -56
- niwrap_afni/afni/v_3dedgedog.py +59 -72
- niwrap_afni/afni/v_3dfim_.py +60 -73
- niwrap_afni/afni/v_3dfractionize.py +36 -54
- niwrap_afni/afni/v_3dhistog.py +63 -70
- niwrap_afni/afni/v_3dinfill.py +48 -63
- niwrap_afni/afni/v_3dinfo.py +250 -161
- niwrap_afni/afni/v_3dkmeans.py +73 -79
- niwrap_afni/afni/v_3dmask_svd.py +46 -62
- niwrap_afni/afni/v_3dmask_tool.py +53 -65
- niwrap_afni/afni/v_3dmaskave.py +36 -56
- niwrap_afni/afni/v_3dmaskdump.py +73 -78
- niwrap_afni/afni/v_3dmatcalc.py +29 -50
- niwrap_afni/afni/v_3dmatmult.py +31 -51
- niwrap_afni/afni/v_3dmaxdisp.py +30 -50
- niwrap_afni/afni/v_3dmaxima.py +68 -70
- niwrap_afni/afni/v_3dmerge.py +48 -61
- niwrap_afni/afni/v_3dnewid.py +37 -53
- niwrap_afni/afni/v_3dnvals.py +24 -45
- niwrap_afni/afni/v_3dpc.py +58 -68
- niwrap_afni/afni/v_3drefit.py +65 -73
- niwrap_afni/afni/v_3drename.py +22 -44
- niwrap_afni/afni/v_3dresample.py +38 -56
- niwrap_afni/afni/v_3dretroicor.py +51 -67
- niwrap_afni/afni/v_3drotate.py +83 -83
- niwrap_afni/afni/v_3dsvm.py +90 -88
- niwrap_afni/afni/v_3dsvm_linpredict.py +25 -47
- niwrap_afni/afni/v_3dto_xdataset.py +25 -47
- niwrap_afni/afni/v_3dttest__.py +77 -81
- niwrap_afni/afni/v_3dvolreg.py +60 -70
- niwrap_afni/afni/v_4swap.py +22 -44
- niwrap_afni/afni/v__1d_diff_mag.py +20 -44
- niwrap_afni/afni/v__2dwarper.py +20 -44
- niwrap_afni/afni/v__2dwarper_allin.py +28 -50
- niwrap_afni/afni/v__4_daverage.py +22 -44
- niwrap_afni/afni/v__add_edge.py +59 -69
- niwrap_afni/afni/v__afni_env.py +42 -56
- niwrap_afni/afni/v__afni_orient2_raimap.py +20 -43
- niwrap_afni/afni/v__afni_orient_sign.py +21 -45
- niwrap_afni/afni/v__afni_r_package_install.py +34 -52
- niwrap_afni/afni/v__afni_refacer_make_master.py +20 -44
- niwrap_afni/afni/v__afni_refacer_make_onebig_a12.py +21 -45
- niwrap_afni/afni/v__afni_refacer_run.py +55 -67
- niwrap_afni/afni/v__afni_run_me.py +24 -45
- niwrap_afni/afni/v__align_centers.py +57 -68
- niwrap_afni/afni/v__align_partial_oblique.py +42 -58
- niwrap_afni/afni/v__anaticor.py +50 -61
- niwrap_afni/afni/v__animal_warper.py +113 -104
- niwrap_afni/afni/v__atlasize.py +67 -74
- niwrap_afni/afni/v__auto_tlrc.py +119 -105
- niwrap_afni/afni/v__build_afni_xlib.py +30 -48
- niwrap_afni/afni/v__center_distance.py +22 -45
- niwrap_afni/afni/v__chauffeur_afni.py +68 -75
- niwrap_afni/afni/v__check_for_afni_dset.py +21 -45
- niwrap_afni/afni/v__clip_volume.py +71 -78
- niwrap_afni/afni/v__clust_exp_cat_lab.py +25 -47
- niwrap_afni/afni/v__clust_exp_run_shiny.py +22 -44
- niwrap_afni/afni/v__command_globb.py +27 -51
- niwrap_afni/afni/v__compute_gcor.py +38 -56
- niwrap_afni/afni/v__compute_oc_weights.py +47 -62
- niwrap_afni/afni/v__deblank_file_names.py +35 -51
- niwrap_afni/afni/v__demo_prompt.py +20 -44
- niwrap_afni/afni/v__dice_metric.py +48 -59
- niwrap_afni/afni/v__diff_files.py +47 -58
- niwrap_afni/afni/v__diff_tree.py +61 -67
- niwrap_afni/afni/v__djunct_4d_imager.py +37 -58
- niwrap_afni/afni/v__djunct_4d_slices_to_3d_vol.py +20 -44
- niwrap_afni/afni/v__djunct_anonymize.py +28 -48
- niwrap_afni/afni/v__djunct_dwi_selector_tcsh.py +170 -0
- niwrap_afni/afni/v__djunct_edgy_align_check.py +88 -86
- niwrap_afni/afni/v__djunct_modal_smoothing_with_rep.py +43 -60
- niwrap_afni/afni/v__djunct_montage_coordinator.py +36 -54
- niwrap_afni/afni/v__djunct_overlap_check.py +80 -80
- niwrap_afni/afni/v__djunct_ssw_intermed_edge_imgs.py +54 -63
- niwrap_afni/afni/v__do_examples.py +20 -44
- niwrap_afni/afni/v__electro_grid.py +35 -54
- niwrap_afni/afni/v__examine_gen_feat_dists.py +42 -57
- niwrap_afni/afni/v__extract_meica_ortvec.py +36 -55
- niwrap_afni/afni/v__fast_roi.py +41 -56
- niwrap_afni/afni/v__fat_tract_colorize.py +37 -55
- niwrap_afni/afni/v__find_afni_dset_path.py +30 -48
- niwrap_afni/afni/v__fix_fssphere.py +32 -51
- niwrap_afni/afni/v__float_fix.py +24 -47
- niwrap_afni/afni/v__from_rai.py +22 -44
- niwrap_afni/afni/v__fs_roi_label.py +45 -60
- niwrap_afni/afni/v__fslabel2dset.py +33 -52
- niwrap_afni/afni/v__get_afni_dims.py +20 -44
- niwrap_afni/afni/v__get_afni_id.py +20 -44
- niwrap_afni/afni/v__get_afni_orient.py +23 -46
- niwrap_afni/afni/v__get_afni_prefix.py +23 -45
- niwrap_afni/afni/v__get_afni_res.py +23 -45
- niwrap_afni/afni/v__get_afni_version.py +21 -45
- niwrap_afni/afni/v__get_afni_view.py +20 -44
- niwrap_afni/afni/v__grad_flip_test.py +58 -69
- niwrap_afni/afni/v__grayplot.py +33 -53
- niwrap_afni/afni/v__help_afni.py +31 -49
- niwrap_afni/afni/v__is_oblique.py +20 -44
- niwrap_afni/afni/v__iso_masks.py +23 -45
- niwrap_afni/afni/v__make_label_table.py +116 -106
- niwrap_afni/afni/v__make_plug_diff.py +32 -49
- niwrap_afni/afni/v__measure_bb_thick.py +59 -72
- niwrap_afni/afni/v__measure_erosion_thick.py +45 -60
- niwrap_afni/afni/v__measure_in2out.py +50 -63
- niwrap_afni/afni/v__move_to_series_dirs.py +41 -57
- niwrap_afni/afni/v__no_ext.py +23 -46
- niwrap_afni/afni/v__no_pound.py +20 -43
- niwrap_afni/afni/v__noisy_skull_strip.py +29 -51
- niwrap_afni/afni/v__np.py +28 -50
- niwrap_afni/afni/v__parse_afni_name.py +24 -48
- niwrap_afni/afni/v__purify_1_d.py +26 -47
- niwrap_afni/afni/v__quiet_talkers.py +38 -54
- niwrap_afni/afni/v__radial_correlate.py +74 -79
- niwrap_afni/afni/v__rename_panga.py +43 -58
- niwrap_afni/afni/v__reorder.py +38 -56
- niwrap_afni/afni/v__retino_proc.py +130 -114
- niwrap_afni/afni/v__roi_corr_mat.py +42 -57
- niwrap_afni/afni/v__roi_decluster.py +40 -57
- niwrap_afni/afni/v__roi_modal_grow.py +39 -56
- niwrap_afni/afni/v__scale_volume.py +38 -55
- niwrap_afni/afni/v__script_check.py +25 -47
- niwrap_afni/afni/v__shift_volume.py +36 -55
- niwrap_afni/afni/v__show_dynamic_range.py +26 -50
- niwrap_afni/afni/v__simulate_motion.py +58 -67
- niwrap_afni/afni/v__skull_strip_touch_up.py +36 -55
- niwrap_afni/afni/v__snapshot_volreg.py +29 -50
- niwrap_afni/afni/v__spharm_examples.py +31 -49
- niwrap_afni/afni/v__sswarper.py +89 -89
- niwrap_afni/afni/v__statauxcode.py +20 -44
- niwrap_afni/afni/v__suma_acknowledge.py +40 -58
- niwrap_afni/afni/v__suma_align_to_experiment.py +75 -78
- niwrap_afni/afni/v__suma_fsvol_to_brik.py +24 -47
- niwrap_afni/afni/v__suma_make_spec_caret.py +35 -54
- niwrap_afni/afni/v__suma_make_spec_fs.py +60 -69
- niwrap_afni/afni/v__suma_make_spec_sf.py +28 -50
- niwrap_afni/afni/v__suma_renumber_fs.py +29 -53
- niwrap_afni/afni/v__suma_reprefixize_spec.py +28 -51
- niwrap_afni/afni/v__surf_smooth_heat_07_examples.py +20 -43
- niwrap_afni/afni/v__surf_to_vol_spackle.py +57 -68
- niwrap_afni/afni/v__t1scale.py +50 -61
- niwrap_afni/afni/v__thickness_master.py +28 -50
- niwrap_afni/afni/v__time_diff.py +22 -44
- niwrap_afni/afni/v__to_mni_awarp.py +22 -48
- niwrap_afni/afni/v__to_mni_qwarpar.py +23 -46
- niwrap_afni/afni/v__to_rai.py +22 -44
- niwrap_afni/afni/v__update_afni_binaries.py +73 -73
- niwrap_afni/afni/v__vol_center.py +23 -45
- niwrap_afni/afni/v__xyz_to_ijk.py +30 -50
- niwrap_afni/afni/vecwarp.py +41 -59
- niwrap_afni/afni/waver.py +80 -83
- niwrap_afni/afni/whirlgif.py +42 -60
- niwrap_afni/afni/xmat_tool_py.py +66 -70
- niwrap_afni-0.7.0.dist-info/METADATA +8 -0
- niwrap_afni-0.7.0.dist-info/RECORD +569 -0
- niwrap_afni-0.7.0.dist-info/WHEEL +4 -0
- niwrap_afni/afni/v__djunct_dwi_selector.py +0 -192
- niwrap_afni-0.6.3.dist-info/METADATA +0 -8
- niwrap_afni-0.6.3.dist-info/RECORD +0 -569
- niwrap_afni-0.6.3.dist-info/WHEEL +0 -4
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
V__DJUNCT_EDGY_ALIGN_CHECK_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="263194bcd65e1cbac2926808163efba80932de8e.boutiques",
|
|
10
10
|
name="@djunct_edgy_align_check",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,7 +14,36 @@ V__DJUNCT_EDGY_ALIGN_CHECK_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
VDjunctEdgyAlignCheckParameters = typing.TypedDict('VDjunctEdgyAlignCheckParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/@djunct_edgy_align_check"]],
|
|
18
|
+
"ULAY": str,
|
|
19
|
+
"OLAY": str,
|
|
20
|
+
"PREFIX": str,
|
|
21
|
+
"set_dicom_xyz": typing.NotRequired[list[float] | None],
|
|
22
|
+
"box_focus_slices": typing.NotRequired[str | None],
|
|
23
|
+
"montgap": typing.NotRequired[float | None],
|
|
24
|
+
"montcolor": typing.NotRequired[str | None],
|
|
25
|
+
"cbar": typing.NotRequired[str | None],
|
|
26
|
+
"save_ftype": typing.NotRequired[str | None],
|
|
27
|
+
"umin_fac": typing.NotRequired[float | None],
|
|
28
|
+
"montx": typing.NotRequired[float | None],
|
|
29
|
+
"monty": typing.NotRequired[float | None],
|
|
30
|
+
"use_olay_grid": typing.NotRequired[str | None],
|
|
31
|
+
"label_mode": typing.NotRequired[str | None],
|
|
32
|
+
"help_flag": bool,
|
|
33
|
+
"ver_flag": bool,
|
|
34
|
+
"echo_flag": bool,
|
|
35
|
+
"sharpen_ulay_off_flag": bool,
|
|
36
|
+
"mask_olay_edges_flag": bool,
|
|
37
|
+
"no_cor_flag": bool,
|
|
38
|
+
"no_sag_flag": bool,
|
|
39
|
+
"no_axi_flag": bool,
|
|
40
|
+
"no_clean_flag": bool,
|
|
41
|
+
"ulay_range": typing.NotRequired[list[float] | None],
|
|
42
|
+
"ulay_range_nz": typing.NotRequired[list[float] | None],
|
|
43
|
+
"ulay_range_am": typing.NotRequired[list[float] | None],
|
|
44
|
+
})
|
|
45
|
+
VDjunctEdgyAlignCheckParametersTagged = typing.TypedDict('VDjunctEdgyAlignCheckParametersTagged', {
|
|
46
|
+
"@type": typing.Literal["afni/@djunct_edgy_align_check"],
|
|
18
47
|
"ULAY": str,
|
|
19
48
|
"OLAY": str,
|
|
20
49
|
"PREFIX": str,
|
|
@@ -42,42 +71,11 @@ VDjunctEdgyAlignCheckParameters = typing.TypedDict('VDjunctEdgyAlignCheckParamet
|
|
|
42
71
|
"ulay_range_nz": typing.NotRequired[list[float] | None],
|
|
43
72
|
"ulay_range_am": typing.NotRequired[list[float] | None],
|
|
44
73
|
})
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
def dyn_cargs(
|
|
48
|
-
t: str,
|
|
49
|
-
) -> typing.Any:
|
|
50
|
-
"""
|
|
51
|
-
Get build cargs function by command type.
|
|
52
|
-
|
|
53
|
-
Args:
|
|
54
|
-
t: Command type.
|
|
55
|
-
Returns:
|
|
56
|
-
Build cargs function.
|
|
57
|
-
"""
|
|
58
|
-
return {
|
|
59
|
-
"@djunct_edgy_align_check": v__djunct_edgy_align_check_cargs,
|
|
60
|
-
}.get(t)
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
def dyn_outputs(
|
|
64
|
-
t: str,
|
|
65
|
-
) -> typing.Any:
|
|
66
|
-
"""
|
|
67
|
-
Get build outputs function by command type.
|
|
68
|
-
|
|
69
|
-
Args:
|
|
70
|
-
t: Command type.
|
|
71
|
-
Returns:
|
|
72
|
-
Build outputs function.
|
|
73
|
-
"""
|
|
74
|
-
return {
|
|
75
|
-
}.get(t)
|
|
76
74
|
|
|
77
75
|
|
|
78
76
|
class VDjunctEdgyAlignCheckOutputs(typing.NamedTuple):
|
|
79
77
|
"""
|
|
80
|
-
Output object returned when calling `
|
|
78
|
+
Output object returned when calling `VDjunctEdgyAlignCheckParameters(...)`.
|
|
81
79
|
"""
|
|
82
80
|
root: OutputPathType
|
|
83
81
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -110,7 +108,7 @@ def v__djunct_edgy_align_check_params(
|
|
|
110
108
|
ulay_range: list[float] | None = None,
|
|
111
109
|
ulay_range_nz: list[float] | None = None,
|
|
112
110
|
ulay_range_am: list[float] | None = None,
|
|
113
|
-
) ->
|
|
111
|
+
) -> VDjunctEdgyAlignCheckParametersTagged:
|
|
114
112
|
"""
|
|
115
113
|
Build parameters.
|
|
116
114
|
|
|
@@ -145,7 +143,7 @@ def v__djunct_edgy_align_check_params(
|
|
|
145
143
|
Parameter dictionary
|
|
146
144
|
"""
|
|
147
145
|
params = {
|
|
148
|
-
"
|
|
146
|
+
"@type": "afni/@djunct_edgy_align_check",
|
|
149
147
|
"ULAY": ulay,
|
|
150
148
|
"OLAY": olay,
|
|
151
149
|
"PREFIX": prefix,
|
|
@@ -205,55 +203,55 @@ def v__djunct_edgy_align_check_cargs(
|
|
|
205
203
|
"""
|
|
206
204
|
cargs = []
|
|
207
205
|
cargs.append("@djunct_edgy_align_check")
|
|
208
|
-
cargs.append(params.get("ULAY"))
|
|
209
|
-
cargs.append(params.get("OLAY"))
|
|
210
|
-
cargs.append(params.get("PREFIX"))
|
|
211
|
-
if params.get("set_dicom_xyz") is not None:
|
|
212
|
-
cargs.extend(map(str, params.get("set_dicom_xyz")))
|
|
213
|
-
if params.get("box_focus_slices") is not None:
|
|
214
|
-
cargs.append(params.get("box_focus_slices"))
|
|
215
|
-
if params.get("montgap") is not None:
|
|
216
|
-
cargs.append(str(params.get("montgap")))
|
|
217
|
-
if params.get("montcolor") is not None:
|
|
218
|
-
cargs.append(params.get("montcolor"))
|
|
219
|
-
if params.get("cbar") is not None:
|
|
220
|
-
cargs.append(params.get("cbar"))
|
|
221
|
-
if params.get("save_ftype") is not None:
|
|
222
|
-
cargs.append(params.get("save_ftype"))
|
|
223
|
-
if params.get("umin_fac") is not None:
|
|
224
|
-
cargs.append(str(params.get("umin_fac")))
|
|
225
|
-
if params.get("montx") is not None:
|
|
226
|
-
cargs.append(str(params.get("montx")))
|
|
227
|
-
if params.get("monty") is not None:
|
|
228
|
-
cargs.append(str(params.get("monty")))
|
|
229
|
-
if params.get("use_olay_grid") is not None:
|
|
230
|
-
cargs.append(params.get("use_olay_grid"))
|
|
231
|
-
if params.get("label_mode") is not None:
|
|
232
|
-
cargs.append(params.get("label_mode"))
|
|
233
|
-
if params.get("help_flag"):
|
|
206
|
+
cargs.append(params.get("ULAY", None))
|
|
207
|
+
cargs.append(params.get("OLAY", None))
|
|
208
|
+
cargs.append(params.get("PREFIX", None))
|
|
209
|
+
if params.get("set_dicom_xyz", None) is not None:
|
|
210
|
+
cargs.extend(map(str, params.get("set_dicom_xyz", None)))
|
|
211
|
+
if params.get("box_focus_slices", None) is not None:
|
|
212
|
+
cargs.append(params.get("box_focus_slices", None))
|
|
213
|
+
if params.get("montgap", None) is not None:
|
|
214
|
+
cargs.append(str(params.get("montgap", None)))
|
|
215
|
+
if params.get("montcolor", None) is not None:
|
|
216
|
+
cargs.append(params.get("montcolor", None))
|
|
217
|
+
if params.get("cbar", None) is not None:
|
|
218
|
+
cargs.append(params.get("cbar", None))
|
|
219
|
+
if params.get("save_ftype", None) is not None:
|
|
220
|
+
cargs.append(params.get("save_ftype", None))
|
|
221
|
+
if params.get("umin_fac", None) is not None:
|
|
222
|
+
cargs.append(str(params.get("umin_fac", None)))
|
|
223
|
+
if params.get("montx", None) is not None:
|
|
224
|
+
cargs.append(str(params.get("montx", None)))
|
|
225
|
+
if params.get("monty", None) is not None:
|
|
226
|
+
cargs.append(str(params.get("monty", None)))
|
|
227
|
+
if params.get("use_olay_grid", None) is not None:
|
|
228
|
+
cargs.append(params.get("use_olay_grid", None))
|
|
229
|
+
if params.get("label_mode", None) is not None:
|
|
230
|
+
cargs.append(params.get("label_mode", None))
|
|
231
|
+
if params.get("help_flag", False):
|
|
234
232
|
cargs.append("-help")
|
|
235
|
-
if params.get("ver_flag"):
|
|
233
|
+
if params.get("ver_flag", False):
|
|
236
234
|
cargs.append("-ver")
|
|
237
|
-
if params.get("echo_flag"):
|
|
235
|
+
if params.get("echo_flag", False):
|
|
238
236
|
cargs.append("-echo")
|
|
239
|
-
if params.get("sharpen_ulay_off_flag"):
|
|
237
|
+
if params.get("sharpen_ulay_off_flag", False):
|
|
240
238
|
cargs.append("-sharpen_ulay_off")
|
|
241
|
-
if params.get("mask_olay_edges_flag"):
|
|
239
|
+
if params.get("mask_olay_edges_flag", False):
|
|
242
240
|
cargs.append("-mask_olay_edges")
|
|
243
|
-
if params.get("no_cor_flag"):
|
|
241
|
+
if params.get("no_cor_flag", False):
|
|
244
242
|
cargs.append("-no_cor")
|
|
245
|
-
if params.get("no_sag_flag"):
|
|
243
|
+
if params.get("no_sag_flag", False):
|
|
246
244
|
cargs.append("-no_sag")
|
|
247
|
-
if params.get("no_axi_flag"):
|
|
245
|
+
if params.get("no_axi_flag", False):
|
|
248
246
|
cargs.append("-no_axi")
|
|
249
|
-
if params.get("no_clean_flag"):
|
|
247
|
+
if params.get("no_clean_flag", False):
|
|
250
248
|
cargs.append("-no_clean")
|
|
251
|
-
if params.get("ulay_range") is not None:
|
|
252
|
-
cargs.extend(map(str, params.get("ulay_range")))
|
|
253
|
-
if params.get("ulay_range_nz") is not None:
|
|
254
|
-
cargs.extend(map(str, params.get("ulay_range_nz")))
|
|
255
|
-
if params.get("ulay_range_am") is not None:
|
|
256
|
-
cargs.extend(map(str, params.get("ulay_range_am")))
|
|
249
|
+
if params.get("ulay_range", None) is not None:
|
|
250
|
+
cargs.extend(map(str, params.get("ulay_range", None)))
|
|
251
|
+
if params.get("ulay_range_nz", None) is not None:
|
|
252
|
+
cargs.extend(map(str, params.get("ulay_range_nz", None)))
|
|
253
|
+
if params.get("ulay_range_am", None) is not None:
|
|
254
|
+
cargs.extend(map(str, params.get("ulay_range_am", None)))
|
|
257
255
|
return cargs
|
|
258
256
|
|
|
259
257
|
|
|
@@ -278,11 +276,13 @@ def v__djunct_edgy_align_check_outputs(
|
|
|
278
276
|
|
|
279
277
|
def v__djunct_edgy_align_check_execute(
|
|
280
278
|
params: VDjunctEdgyAlignCheckParameters,
|
|
281
|
-
|
|
279
|
+
runner: Runner | None = None,
|
|
282
280
|
) -> VDjunctEdgyAlignCheckOutputs:
|
|
283
281
|
"""
|
|
284
|
-
|
|
285
|
-
|
|
282
|
+
@djunct_edgy_align_check
|
|
283
|
+
|
|
284
|
+
Helper script for various tasks, heavily modeled on RW Cox's
|
|
285
|
+
'@snapshot_volreg' script.
|
|
286
286
|
|
|
287
287
|
Author: AFNI Developers
|
|
288
288
|
|
|
@@ -290,10 +290,12 @@ def v__djunct_edgy_align_check_execute(
|
|
|
290
290
|
|
|
291
291
|
Args:
|
|
292
292
|
params: The parameters.
|
|
293
|
-
|
|
293
|
+
runner: Command runner.
|
|
294
294
|
Returns:
|
|
295
295
|
NamedTuple of outputs (described in `VDjunctEdgyAlignCheckOutputs`).
|
|
296
296
|
"""
|
|
297
|
+
runner = runner or get_global_runner()
|
|
298
|
+
execution = runner.start_execution(V__DJUNCT_EDGY_ALIGN_CHECK_METADATA)
|
|
297
299
|
params = execution.params(params)
|
|
298
300
|
cargs = v__djunct_edgy_align_check_cargs(params, execution)
|
|
299
301
|
ret = v__djunct_edgy_align_check_outputs(params, execution)
|
|
@@ -331,8 +333,10 @@ def v__djunct_edgy_align_check(
|
|
|
331
333
|
runner: Runner | None = None,
|
|
332
334
|
) -> VDjunctEdgyAlignCheckOutputs:
|
|
333
335
|
"""
|
|
334
|
-
|
|
335
|
-
|
|
336
|
+
@djunct_edgy_align_check
|
|
337
|
+
|
|
338
|
+
Helper script for various tasks, heavily modeled on RW Cox's
|
|
339
|
+
'@snapshot_volreg' script.
|
|
336
340
|
|
|
337
341
|
Author: AFNI Developers
|
|
338
342
|
|
|
@@ -369,8 +373,6 @@ def v__djunct_edgy_align_check(
|
|
|
369
373
|
Returns:
|
|
370
374
|
NamedTuple of outputs (described in `VDjunctEdgyAlignCheckOutputs`).
|
|
371
375
|
"""
|
|
372
|
-
runner = runner or get_global_runner()
|
|
373
|
-
execution = runner.start_execution(V__DJUNCT_EDGY_ALIGN_CHECK_METADATA)
|
|
374
376
|
params = v__djunct_edgy_align_check_params(
|
|
375
377
|
ulay=ulay,
|
|
376
378
|
olay=olay,
|
|
@@ -399,13 +401,13 @@ def v__djunct_edgy_align_check(
|
|
|
399
401
|
ulay_range_nz=ulay_range_nz,
|
|
400
402
|
ulay_range_am=ulay_range_am,
|
|
401
403
|
)
|
|
402
|
-
return v__djunct_edgy_align_check_execute(params,
|
|
404
|
+
return v__djunct_edgy_align_check_execute(params, runner)
|
|
403
405
|
|
|
404
406
|
|
|
405
407
|
__all__ = [
|
|
406
408
|
"VDjunctEdgyAlignCheckOutputs",
|
|
407
|
-
"VDjunctEdgyAlignCheckParameters",
|
|
408
409
|
"V__DJUNCT_EDGY_ALIGN_CHECK_METADATA",
|
|
409
410
|
"v__djunct_edgy_align_check",
|
|
411
|
+
"v__djunct_edgy_align_check_execute",
|
|
410
412
|
"v__djunct_edgy_align_check_params",
|
|
411
413
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
V__DJUNCT_MODAL_SMOOTHING_WITH_REP_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="549d26acfd55eb2936295a593b7935e86b19dc28.boutiques",
|
|
10
10
|
name="@djunct_modal_smoothing_with_rep",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,7 +14,18 @@ V__DJUNCT_MODAL_SMOOTHING_WITH_REP_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
VDjunctModalSmoothingWithRepParameters = typing.TypedDict('VDjunctModalSmoothingWithRepParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/@djunct_modal_smoothing_with_rep"]],
|
|
18
|
+
"input_file": InputPathType,
|
|
19
|
+
"output_prefix": str,
|
|
20
|
+
"modesmooth": typing.NotRequired[float | None],
|
|
21
|
+
"help_view": bool,
|
|
22
|
+
"help": bool,
|
|
23
|
+
"version": bool,
|
|
24
|
+
"overwrite": bool,
|
|
25
|
+
"no_clean": bool,
|
|
26
|
+
})
|
|
27
|
+
VDjunctModalSmoothingWithRepParametersTagged = typing.TypedDict('VDjunctModalSmoothingWithRepParametersTagged', {
|
|
28
|
+
"@type": typing.Literal["afni/@djunct_modal_smoothing_with_rep"],
|
|
18
29
|
"input_file": InputPathType,
|
|
19
30
|
"output_prefix": str,
|
|
20
31
|
"modesmooth": typing.NotRequired[float | None],
|
|
@@ -24,43 +35,11 @@ VDjunctModalSmoothingWithRepParameters = typing.TypedDict('VDjunctModalSmoothing
|
|
|
24
35
|
"overwrite": bool,
|
|
25
36
|
"no_clean": bool,
|
|
26
37
|
})
|
|
27
|
-
|
|
28
|
-
|
|
29
|
-
def dyn_cargs(
|
|
30
|
-
t: str,
|
|
31
|
-
) -> typing.Any:
|
|
32
|
-
"""
|
|
33
|
-
Get build cargs function by command type.
|
|
34
|
-
|
|
35
|
-
Args:
|
|
36
|
-
t: Command type.
|
|
37
|
-
Returns:
|
|
38
|
-
Build cargs function.
|
|
39
|
-
"""
|
|
40
|
-
return {
|
|
41
|
-
"@djunct_modal_smoothing_with_rep": v__djunct_modal_smoothing_with_rep_cargs,
|
|
42
|
-
}.get(t)
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
def dyn_outputs(
|
|
46
|
-
t: str,
|
|
47
|
-
) -> typing.Any:
|
|
48
|
-
"""
|
|
49
|
-
Get build outputs function by command type.
|
|
50
|
-
|
|
51
|
-
Args:
|
|
52
|
-
t: Command type.
|
|
53
|
-
Returns:
|
|
54
|
-
Build outputs function.
|
|
55
|
-
"""
|
|
56
|
-
return {
|
|
57
|
-
"@djunct_modal_smoothing_with_rep": v__djunct_modal_smoothing_with_rep_outputs,
|
|
58
|
-
}.get(t)
|
|
59
38
|
|
|
60
39
|
|
|
61
40
|
class VDjunctModalSmoothingWithRepOutputs(typing.NamedTuple):
|
|
62
41
|
"""
|
|
63
|
-
Output object returned when calling `
|
|
42
|
+
Output object returned when calling `VDjunctModalSmoothingWithRepParameters(...)`.
|
|
64
43
|
"""
|
|
65
44
|
root: OutputPathType
|
|
66
45
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -79,7 +58,7 @@ def v__djunct_modal_smoothing_with_rep_params(
|
|
|
79
58
|
version: bool = False,
|
|
80
59
|
overwrite: bool = False,
|
|
81
60
|
no_clean: bool = False,
|
|
82
|
-
) ->
|
|
61
|
+
) -> VDjunctModalSmoothingWithRepParametersTagged:
|
|
83
62
|
"""
|
|
84
63
|
Build parameters.
|
|
85
64
|
|
|
@@ -96,7 +75,7 @@ def v__djunct_modal_smoothing_with_rep_params(
|
|
|
96
75
|
Parameter dictionary
|
|
97
76
|
"""
|
|
98
77
|
params = {
|
|
99
|
-
"
|
|
78
|
+
"@type": "afni/@djunct_modal_smoothing_with_rep",
|
|
100
79
|
"input_file": input_file,
|
|
101
80
|
"output_prefix": output_prefix,
|
|
102
81
|
"help_view": help_view,
|
|
@@ -125,22 +104,22 @@ def v__djunct_modal_smoothing_with_rep_cargs(
|
|
|
125
104
|
"""
|
|
126
105
|
cargs = []
|
|
127
106
|
cargs.append("@djunct_modal_smoothing_with_rep")
|
|
128
|
-
cargs.append(execution.input_file(params.get("input_file")))
|
|
129
|
-
cargs.append(params.get("output_prefix"))
|
|
130
|
-
if params.get("modesmooth") is not None:
|
|
107
|
+
cargs.append(execution.input_file(params.get("input_file", None)))
|
|
108
|
+
cargs.append(params.get("output_prefix", None))
|
|
109
|
+
if params.get("modesmooth", None) is not None:
|
|
131
110
|
cargs.extend([
|
|
132
111
|
"-modesmooth",
|
|
133
|
-
str(params.get("modesmooth"))
|
|
112
|
+
str(params.get("modesmooth", None))
|
|
134
113
|
])
|
|
135
|
-
if params.get("help_view"):
|
|
114
|
+
if params.get("help_view", False):
|
|
136
115
|
cargs.append("-hview")
|
|
137
|
-
if params.get("help"):
|
|
116
|
+
if params.get("help", False):
|
|
138
117
|
cargs.append("-help")
|
|
139
|
-
if params.get("version"):
|
|
118
|
+
if params.get("version", False):
|
|
140
119
|
cargs.append("-ver")
|
|
141
|
-
if params.get("overwrite"):
|
|
120
|
+
if params.get("overwrite", False):
|
|
142
121
|
cargs.append("-overwrite")
|
|
143
|
-
if params.get("no_clean"):
|
|
122
|
+
if params.get("no_clean", False):
|
|
144
123
|
cargs.append("-no_clean")
|
|
145
124
|
return cargs
|
|
146
125
|
|
|
@@ -160,20 +139,22 @@ def v__djunct_modal_smoothing_with_rep_outputs(
|
|
|
160
139
|
"""
|
|
161
140
|
ret = VDjunctModalSmoothingWithRepOutputs(
|
|
162
141
|
root=execution.output_file("."),
|
|
163
|
-
output_file_head=execution.output_file(params.get("output_prefix") + "+tlrc.HEAD"),
|
|
164
|
-
output_file_brik=execution.output_file(params.get("output_prefix") + "+tlrc.BRIK"),
|
|
142
|
+
output_file_head=execution.output_file(params.get("output_prefix", None) + "+tlrc.HEAD"),
|
|
143
|
+
output_file_brik=execution.output_file(params.get("output_prefix", None) + "+tlrc.BRIK"),
|
|
165
144
|
)
|
|
166
145
|
return ret
|
|
167
146
|
|
|
168
147
|
|
|
169
148
|
def v__djunct_modal_smoothing_with_rep_execute(
|
|
170
149
|
params: VDjunctModalSmoothingWithRepParameters,
|
|
171
|
-
|
|
150
|
+
runner: Runner | None = None,
|
|
172
151
|
) -> VDjunctModalSmoothingWithRepOutputs:
|
|
173
152
|
"""
|
|
174
|
-
|
|
175
|
-
|
|
176
|
-
|
|
153
|
+
@djunct_modal_smoothing_with_rep
|
|
154
|
+
|
|
155
|
+
A script to perform modal smoothing of ROI maps and check for eliminated
|
|
156
|
+
ROIs. If any ROIs are eliminated during smoothing, they are restored,
|
|
157
|
+
potentially in a degraded form.
|
|
177
158
|
|
|
178
159
|
Author: AFNI Developers
|
|
179
160
|
|
|
@@ -181,10 +162,12 @@ def v__djunct_modal_smoothing_with_rep_execute(
|
|
|
181
162
|
|
|
182
163
|
Args:
|
|
183
164
|
params: The parameters.
|
|
184
|
-
|
|
165
|
+
runner: Command runner.
|
|
185
166
|
Returns:
|
|
186
167
|
NamedTuple of outputs (described in `VDjunctModalSmoothingWithRepOutputs`).
|
|
187
168
|
"""
|
|
169
|
+
runner = runner or get_global_runner()
|
|
170
|
+
execution = runner.start_execution(V__DJUNCT_MODAL_SMOOTHING_WITH_REP_METADATA)
|
|
188
171
|
params = execution.params(params)
|
|
189
172
|
cargs = v__djunct_modal_smoothing_with_rep_cargs(params, execution)
|
|
190
173
|
ret = v__djunct_modal_smoothing_with_rep_outputs(params, execution)
|
|
@@ -204,9 +187,11 @@ def v__djunct_modal_smoothing_with_rep(
|
|
|
204
187
|
runner: Runner | None = None,
|
|
205
188
|
) -> VDjunctModalSmoothingWithRepOutputs:
|
|
206
189
|
"""
|
|
207
|
-
|
|
208
|
-
|
|
209
|
-
|
|
190
|
+
@djunct_modal_smoothing_with_rep
|
|
191
|
+
|
|
192
|
+
A script to perform modal smoothing of ROI maps and check for eliminated
|
|
193
|
+
ROIs. If any ROIs are eliminated during smoothing, they are restored,
|
|
194
|
+
potentially in a degraded form.
|
|
210
195
|
|
|
211
196
|
Author: AFNI Developers
|
|
212
197
|
|
|
@@ -225,8 +210,6 @@ def v__djunct_modal_smoothing_with_rep(
|
|
|
225
210
|
Returns:
|
|
226
211
|
NamedTuple of outputs (described in `VDjunctModalSmoothingWithRepOutputs`).
|
|
227
212
|
"""
|
|
228
|
-
runner = runner or get_global_runner()
|
|
229
|
-
execution = runner.start_execution(V__DJUNCT_MODAL_SMOOTHING_WITH_REP_METADATA)
|
|
230
213
|
params = v__djunct_modal_smoothing_with_rep_params(
|
|
231
214
|
input_file=input_file,
|
|
232
215
|
output_prefix=output_prefix,
|
|
@@ -237,13 +220,13 @@ def v__djunct_modal_smoothing_with_rep(
|
|
|
237
220
|
overwrite=overwrite,
|
|
238
221
|
no_clean=no_clean,
|
|
239
222
|
)
|
|
240
|
-
return v__djunct_modal_smoothing_with_rep_execute(params,
|
|
223
|
+
return v__djunct_modal_smoothing_with_rep_execute(params, runner)
|
|
241
224
|
|
|
242
225
|
|
|
243
226
|
__all__ = [
|
|
244
227
|
"VDjunctModalSmoothingWithRepOutputs",
|
|
245
|
-
"VDjunctModalSmoothingWithRepParameters",
|
|
246
228
|
"V__DJUNCT_MODAL_SMOOTHING_WITH_REP_METADATA",
|
|
247
229
|
"v__djunct_modal_smoothing_with_rep",
|
|
230
|
+
"v__djunct_modal_smoothing_with_rep_execute",
|
|
248
231
|
"v__djunct_modal_smoothing_with_rep_params",
|
|
249
232
|
]
|
|
@@ -6,7 +6,7 @@ import pathlib
|
|
|
6
6
|
from styxdefs import *
|
|
7
7
|
|
|
8
8
|
V__DJUNCT_MONTAGE_COORDINATOR_METADATA = Metadata(
|
|
9
|
-
id="
|
|
9
|
+
id="543baf357b03cf37f54ec8393a57595187a3d63b.boutiques",
|
|
10
10
|
name="@djunct_montage_coordinator",
|
|
11
11
|
package="afni",
|
|
12
12
|
container_image_tag="afni/afni_make_build:AFNI_24.2.06",
|
|
@@ -14,7 +14,17 @@ V__DJUNCT_MONTAGE_COORDINATOR_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
VDjunctMontageCoordinatorParameters = typing.TypedDict('VDjunctMontageCoordinatorParameters', {
|
|
17
|
-
"
|
|
17
|
+
"@type": typing.NotRequired[typing.Literal["afni/@djunct_montage_coordinator"]],
|
|
18
|
+
"input_file": InputPathType,
|
|
19
|
+
"montx": float,
|
|
20
|
+
"monty": float,
|
|
21
|
+
"out_ijk": bool,
|
|
22
|
+
"out_xyz": bool,
|
|
23
|
+
"help": bool,
|
|
24
|
+
"version": bool,
|
|
25
|
+
})
|
|
26
|
+
VDjunctMontageCoordinatorParametersTagged = typing.TypedDict('VDjunctMontageCoordinatorParametersTagged', {
|
|
27
|
+
"@type": typing.Literal["afni/@djunct_montage_coordinator"],
|
|
18
28
|
"input_file": InputPathType,
|
|
19
29
|
"montx": float,
|
|
20
30
|
"monty": float,
|
|
@@ -23,43 +33,11 @@ VDjunctMontageCoordinatorParameters = typing.TypedDict('VDjunctMontageCoordinato
|
|
|
23
33
|
"help": bool,
|
|
24
34
|
"version": bool,
|
|
25
35
|
})
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
def dyn_cargs(
|
|
29
|
-
t: str,
|
|
30
|
-
) -> typing.Any:
|
|
31
|
-
"""
|
|
32
|
-
Get build cargs function by command type.
|
|
33
|
-
|
|
34
|
-
Args:
|
|
35
|
-
t: Command type.
|
|
36
|
-
Returns:
|
|
37
|
-
Build cargs function.
|
|
38
|
-
"""
|
|
39
|
-
return {
|
|
40
|
-
"@djunct_montage_coordinator": v__djunct_montage_coordinator_cargs,
|
|
41
|
-
}.get(t)
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
def dyn_outputs(
|
|
45
|
-
t: str,
|
|
46
|
-
) -> typing.Any:
|
|
47
|
-
"""
|
|
48
|
-
Get build outputs function by command type.
|
|
49
|
-
|
|
50
|
-
Args:
|
|
51
|
-
t: Command type.
|
|
52
|
-
Returns:
|
|
53
|
-
Build outputs function.
|
|
54
|
-
"""
|
|
55
|
-
return {
|
|
56
|
-
"@djunct_montage_coordinator": v__djunct_montage_coordinator_outputs,
|
|
57
|
-
}.get(t)
|
|
58
36
|
|
|
59
37
|
|
|
60
38
|
class VDjunctMontageCoordinatorOutputs(typing.NamedTuple):
|
|
61
39
|
"""
|
|
62
|
-
Output object returned when calling `
|
|
40
|
+
Output object returned when calling `VDjunctMontageCoordinatorParameters(...)`.
|
|
63
41
|
"""
|
|
64
42
|
root: OutputPathType
|
|
65
43
|
"""Output root folder. This is the root folder for all outputs."""
|
|
@@ -75,7 +53,7 @@ def v__djunct_montage_coordinator_params(
|
|
|
75
53
|
out_xyz: bool = False,
|
|
76
54
|
help_: bool = False,
|
|
77
55
|
version: bool = False,
|
|
78
|
-
) ->
|
|
56
|
+
) -> VDjunctMontageCoordinatorParametersTagged:
|
|
79
57
|
"""
|
|
80
58
|
Build parameters.
|
|
81
59
|
|
|
@@ -93,7 +71,7 @@ def v__djunct_montage_coordinator_params(
|
|
|
93
71
|
Parameter dictionary
|
|
94
72
|
"""
|
|
95
73
|
params = {
|
|
96
|
-
"
|
|
74
|
+
"@type": "afni/@djunct_montage_coordinator",
|
|
97
75
|
"input_file": input_file,
|
|
98
76
|
"montx": montx,
|
|
99
77
|
"monty": monty,
|
|
@@ -122,23 +100,23 @@ def v__djunct_montage_coordinator_cargs(
|
|
|
122
100
|
cargs.append("@djunct_montage_coordinator")
|
|
123
101
|
cargs.extend([
|
|
124
102
|
"-inset",
|
|
125
|
-
execution.input_file(params.get("input_file"))
|
|
103
|
+
execution.input_file(params.get("input_file", None))
|
|
126
104
|
])
|
|
127
105
|
cargs.extend([
|
|
128
106
|
"-montx",
|
|
129
|
-
str(params.get("montx"))
|
|
107
|
+
str(params.get("montx", None))
|
|
130
108
|
])
|
|
131
109
|
cargs.extend([
|
|
132
110
|
"-monty",
|
|
133
|
-
str(params.get("monty"))
|
|
111
|
+
str(params.get("monty", None))
|
|
134
112
|
])
|
|
135
|
-
if params.get("out_ijk"):
|
|
113
|
+
if params.get("out_ijk", False):
|
|
136
114
|
cargs.append("-out_ijk")
|
|
137
|
-
if params.get("out_xyz"):
|
|
115
|
+
if params.get("out_xyz", False):
|
|
138
116
|
cargs.append("-out_xyz")
|
|
139
|
-
if params.get("help"):
|
|
117
|
+
if params.get("help", False):
|
|
140
118
|
cargs.append("-help")
|
|
141
|
-
if params.get("version"):
|
|
119
|
+
if params.get("version", False):
|
|
142
120
|
cargs.append("-ver")
|
|
143
121
|
return cargs
|
|
144
122
|
|
|
@@ -165,11 +143,13 @@ def v__djunct_montage_coordinator_outputs(
|
|
|
165
143
|
|
|
166
144
|
def v__djunct_montage_coordinator_execute(
|
|
167
145
|
params: VDjunctMontageCoordinatorParameters,
|
|
168
|
-
|
|
146
|
+
runner: Runner | None = None,
|
|
169
147
|
) -> VDjunctMontageCoordinatorOutputs:
|
|
170
148
|
"""
|
|
171
|
-
|
|
172
|
-
|
|
149
|
+
@djunct_montage_coordinator
|
|
150
|
+
|
|
151
|
+
Small program to calculate how to evenly space a certain number of slices
|
|
152
|
+
within each view plane of a dataset.
|
|
173
153
|
|
|
174
154
|
Author: AFNI Developers
|
|
175
155
|
|
|
@@ -177,10 +157,12 @@ def v__djunct_montage_coordinator_execute(
|
|
|
177
157
|
|
|
178
158
|
Args:
|
|
179
159
|
params: The parameters.
|
|
180
|
-
|
|
160
|
+
runner: Command runner.
|
|
181
161
|
Returns:
|
|
182
162
|
NamedTuple of outputs (described in `VDjunctMontageCoordinatorOutputs`).
|
|
183
163
|
"""
|
|
164
|
+
runner = runner or get_global_runner()
|
|
165
|
+
execution = runner.start_execution(V__DJUNCT_MONTAGE_COORDINATOR_METADATA)
|
|
184
166
|
params = execution.params(params)
|
|
185
167
|
cargs = v__djunct_montage_coordinator_cargs(params, execution)
|
|
186
168
|
ret = v__djunct_montage_coordinator_outputs(params, execution)
|
|
@@ -199,8 +181,10 @@ def v__djunct_montage_coordinator(
|
|
|
199
181
|
runner: Runner | None = None,
|
|
200
182
|
) -> VDjunctMontageCoordinatorOutputs:
|
|
201
183
|
"""
|
|
202
|
-
|
|
203
|
-
|
|
184
|
+
@djunct_montage_coordinator
|
|
185
|
+
|
|
186
|
+
Small program to calculate how to evenly space a certain number of slices
|
|
187
|
+
within each view plane of a dataset.
|
|
204
188
|
|
|
205
189
|
Author: AFNI Developers
|
|
206
190
|
|
|
@@ -220,8 +204,6 @@ def v__djunct_montage_coordinator(
|
|
|
220
204
|
Returns:
|
|
221
205
|
NamedTuple of outputs (described in `VDjunctMontageCoordinatorOutputs`).
|
|
222
206
|
"""
|
|
223
|
-
runner = runner or get_global_runner()
|
|
224
|
-
execution = runner.start_execution(V__DJUNCT_MONTAGE_COORDINATOR_METADATA)
|
|
225
207
|
params = v__djunct_montage_coordinator_params(
|
|
226
208
|
input_file=input_file,
|
|
227
209
|
montx=montx,
|
|
@@ -231,13 +213,13 @@ def v__djunct_montage_coordinator(
|
|
|
231
213
|
help_=help_,
|
|
232
214
|
version=version,
|
|
233
215
|
)
|
|
234
|
-
return v__djunct_montage_coordinator_execute(params,
|
|
216
|
+
return v__djunct_montage_coordinator_execute(params, runner)
|
|
235
217
|
|
|
236
218
|
|
|
237
219
|
__all__ = [
|
|
238
220
|
"VDjunctMontageCoordinatorOutputs",
|
|
239
|
-
"VDjunctMontageCoordinatorParameters",
|
|
240
221
|
"V__DJUNCT_MONTAGE_COORDINATOR_METADATA",
|
|
241
222
|
"v__djunct_montage_coordinator",
|
|
223
|
+
"v__djunct_montage_coordinator_execute",
|
|
242
224
|
"v__djunct_montage_coordinator_params",
|
|
243
225
|
]
|