niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v__get_afni_prefix.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__GET_AFNI_PREFIX_METADATA = Metadata(
-    id="ae0f36ac76fa0ee57fb99900eaf3197e4b29bbf6.boutiques",
+    id="dda4a3045446507faf441f584f272f9f4b5bf979.boutiques",
     name="@GetAfniPrefix",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,20 @@ V__GET_AFNI_PREFIX_METADATA = Metadata(
 
 
 VGetAfniPrefixParameters = typing.TypedDict('VGetAfniPrefixParameters', {
-    "__STYXTYPE__": typing.Literal["@GetAfniPrefix"],
+    "@type": typing.NotRequired[typing.Literal["afni/@GetAfniPrefix"]],
+    "name": InputPathType,
+    "suffix": typing.NotRequired[str | None],
+})
+VGetAfniPrefixParametersTagged = typing.TypedDict('VGetAfniPrefixParametersTagged', {
+    "@type": typing.Literal["afni/@GetAfniPrefix"],
     "name": InputPathType,
     "suffix": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@GetAfniPrefix": v__get_afni_prefix_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VGetAfniPrefixOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__get_afni_prefix(...)`.
+    Output object returned when calling `VGetAfniPrefixParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -62,7 +36,7 @@ class VGetAfniPrefixOutputs(typing.NamedTuple):
 def v__get_afni_prefix_params(
     name: InputPathType,
     suffix: str | None = None,
-) -> VGetAfniPrefixParameters:
+) -> VGetAfniPrefixParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +47,7 @@ def v__get_afni_prefix_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@GetAfniPrefix",
+        "@type": "afni/@GetAfniPrefix",
         "name": name,
     }
     if suffix is not None:
@@ -96,9 +70,9 @@ def v__get_afni_prefix_cargs(
     """
     cargs = []
     cargs.append("@GetAfniPrefix")
-    cargs.append(execution.input_file(params.get("name")))
-    if params.get("suffix") is not None:
-        cargs.append(params.get("suffix"))
+    cargs.append(execution.input_file(params.get("name", None)))
+    if params.get("suffix", None) is not None:
+        cargs.append(params.get("suffix", None))
     return cargs
 
 
@@ -123,9 +97,11 @@ def v__get_afni_prefix_outputs(
 
 def v__get_afni_prefix_execute(
     params: VGetAfniPrefixParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VGetAfniPrefixOutputs:
     """
+    @GetAfniPrefix
+    
     A tool to extract AFNI prefix from a given file path.
     
     Author: AFNI Developers
@@ -134,10 +110,12 @@ def v__get_afni_prefix_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VGetAfniPrefixOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__GET_AFNI_PREFIX_METADATA)
     params = execution.params(params)
     cargs = v__get_afni_prefix_cargs(params, execution)
     ret = v__get_afni_prefix_outputs(params, execution)
@@ -151,6 +129,8 @@ def v__get_afni_prefix(
     runner: Runner | None = None,
 ) -> VGetAfniPrefixOutputs:
     """
+    @GetAfniPrefix
+    
     A tool to extract AFNI prefix from a given file path.
     
     Author: AFNI Developers
@@ -164,19 +144,17 @@ def v__get_afni_prefix(
     Returns:
         NamedTuple of outputs (described in `VGetAfniPrefixOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__GET_AFNI_PREFIX_METADATA)
     params = v__get_afni_prefix_params(
         name=name,
         suffix=suffix,
     )
-    return v__get_afni_prefix_execute(params, execution)
+    return v__get_afni_prefix_execute(params, runner)
 
 
 __all__ = [
     "VGetAfniPrefixOutputs",
-    "VGetAfniPrefixParameters",
     "V__GET_AFNI_PREFIX_METADATA",
     "v__get_afni_prefix",
+    "v__get_afni_prefix_execute",
     "v__get_afni_prefix_params",
 ]

niwrap_afni/afni/v__get_afni_res.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__GET_AFNI_RES_METADATA = Metadata(
-    id="b9b6f2695e7589f0bfac06894107625cc02668bb.boutiques",
+    id="1b660d80a4ac8a3e79aee798185d997a301cebde.boutiques",
     name="@GetAfniRes",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,20 @@ V__GET_AFNI_RES_METADATA = Metadata(
 
 
 VGetAfniResParameters = typing.TypedDict('VGetAfniResParameters', {
-    "__STYXTYPE__": typing.Literal["@GetAfniRes"],
+    "@type": typing.NotRequired[typing.Literal["afni/@GetAfniRes"]],
+    "output_type": typing.NotRequired[typing.Literal["-min", "-max", "-mean"] | None],
+    "input_dataset": InputPathType,
+})
+VGetAfniResParametersTagged = typing.TypedDict('VGetAfniResParametersTagged', {
+    "@type": typing.Literal["afni/@GetAfniRes"],
     "output_type": typing.NotRequired[typing.Literal["-min", "-max", "-mean"] | None],
     "input_dataset": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@GetAfniRes": v__get_afni_res_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class VGetAfniResOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__get_afni_res(...)`.
+    Output object returned when calling `VGetAfniResParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -62,7 +36,7 @@ class VGetAfniResOutputs(typing.NamedTuple):
 def v__get_afni_res_params(
     input_dataset: InputPathType,
     output_type: typing.Literal["-min", "-max", "-mean"] | None = None,
-) -> VGetAfniResParameters:
+) -> VGetAfniResParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +48,7 @@ def v__get_afni_res_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@GetAfniRes",
+        "@type": "afni/@GetAfniRes",
         "input_dataset": input_dataset,
     }
     if output_type is not None:
@@ -97,9 +71,9 @@ def v__get_afni_res_cargs(
     """
     cargs = []
     cargs.append("@GetAfniRes")
-    if params.get("output_type") is not None:
-        cargs.append(params.get("output_type"))
-    cargs.append(execution.input_file(params.get("input_dataset")))
+    if params.get("output_type", None) is not None:
+        cargs.append(params.get("output_type", None))
+    cargs.append(execution.input_file(params.get("input_dataset", None)))
     return cargs
 
 
@@ -124,9 +98,11 @@ def v__get_afni_res_outputs(
 
 def v__get_afni_res_execute(
     params: VGetAfniResParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VGetAfniResOutputs:
     """
+    @GetAfniRes
+    
     Tool to return the voxel resolution of a dataset.
     
     Author: AFNI Developers
@@ -135,10 +111,12 @@ def v__get_afni_res_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VGetAfniResOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__GET_AFNI_RES_METADATA)
     params = execution.params(params)
     cargs = v__get_afni_res_cargs(params, execution)
     ret = v__get_afni_res_outputs(params, execution)
@@ -152,6 +130,8 @@ def v__get_afni_res(
     runner: Runner | None = None,
 ) -> VGetAfniResOutputs:
     """
+    @GetAfniRes
+    
     Tool to return the voxel resolution of a dataset.
     
     Author: AFNI Developers
@@ -166,19 +146,17 @@ def v__get_afni_res(
     Returns:
         NamedTuple of outputs (described in `VGetAfniResOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__GET_AFNI_RES_METADATA)
     params = v__get_afni_res_params(
         output_type=output_type,
         input_dataset=input_dataset,
     )
-    return v__get_afni_res_execute(params, execution)
+    return v__get_afni_res_execute(params, runner)
 
 
 __all__ = [
     "VGetAfniResOutputs",
-    "VGetAfniResParameters",
     "V__GET_AFNI_RES_METADATA",
     "v__get_afni_res",
+    "v__get_afni_res_execute",
     "v__get_afni_res_params",
 ]

niwrap_afni/afni/v__get_afni_version.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__GET_AFNI_VERSION_METADATA = Metadata(
-    id="bb51d1e48d98267f36f879d9daa6a5cd5f703a6f.boutiques",
+    id="1ec98dcf0cb2a49d077f5453d4b46fa724ccee35.boutiques",
     name="@get.afni.version",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__GET_AFNI_VERSION_METADATA = Metadata(
 
 
 VGetAfniVersionParameters = typing.TypedDict('VGetAfniVersionParameters', {
-    "__STYXTYPE__": typing.Literal["@get.afni.version"],
+    "@type": typing.NotRequired[typing.Literal["afni/@get.afni.version"]],
+    "version": str,
+})
+VGetAfniVersionParametersTagged = typing.TypedDict('VGetAfniVersionParametersTagged', {
+    "@type": typing.Literal["afni/@get.afni.version"],
     "version": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@get.afni.version": v__get_afni_version_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@get.afni.version": v__get_afni_version_outputs,
-    }.get(t)
 
 
 class VGetAfniVersionOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__get_afni_version(...)`.
+    Output object returned when calling `VGetAfniVersionParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -64,7 +36,7 @@ class VGetAfniVersionOutputs(typing.NamedTuple):
 
 def v__get_afni_version_params(
     version: str,
-) -> VGetAfniVersionParameters:
+) -> VGetAfniVersionParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +46,7 @@ def v__get_afni_version_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@get.afni.version",
+        "@type": "afni/@get.afni.version",
         "version": version,
     }
     return params
@@ -95,7 +67,7 @@ def v__get_afni_version_cargs(
     """
     cargs = []
     cargs.append("@get.afni.version")
-    cargs.append(params.get("version"))
+    cargs.append(params.get("version", None))
     return cargs
 
 
@@ -114,16 +86,18 @@ def v__get_afni_version_outputs(
     """
     ret = VGetAfniVersionOutputs(
         root=execution.output_file("."),
-        src_dir=execution.output_file("AFNI_" + params.get("version") + "/AFNI/src"),
+        src_dir=execution.output_file("AFNI_" + params.get("version", None) + "/AFNI/src"),
     )
     return ret
 
 
 def v__get_afni_version_execute(
     params: VGetAfniVersionParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VGetAfniVersionOutputs:
     """
+    @get.afni.version
+    
     Downloads the source code for a specified AFNI version.
     
     Author: AFNI Developers
@@ -132,10 +106,12 @@ def v__get_afni_version_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VGetAfniVersionOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__GET_AFNI_VERSION_METADATA)
     params = execution.params(params)
     cargs = v__get_afni_version_cargs(params, execution)
     ret = v__get_afni_version_outputs(params, execution)
@@ -148,6 +124,8 @@ def v__get_afni_version(
     runner: Runner | None = None,
 ) -> VGetAfniVersionOutputs:
     """
+    @get.afni.version
+    
     Downloads the source code for a specified AFNI version.
     
     Author: AFNI Developers
@@ -160,18 +138,16 @@ def v__get_afni_version(
     Returns:
         NamedTuple of outputs (described in `VGetAfniVersionOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__GET_AFNI_VERSION_METADATA)
     params = v__get_afni_version_params(
         version=version,
     )
-    return v__get_afni_version_execute(params, execution)
+    return v__get_afni_version_execute(params, runner)
 
 
 __all__ = [
     "VGetAfniVersionOutputs",
-    "VGetAfniVersionParameters",
     "V__GET_AFNI_VERSION_METADATA",
     "v__get_afni_version",
+    "v__get_afni_version_execute",
     "v__get_afni_version_params",
 ]

niwrap_afni/afni/v__get_afni_view.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__GET_AFNI_VIEW_METADATA = Metadata(
-    id="697dd7318bcca131bdbfbdb54166fd3accb9e01b.boutiques",
+    id="20b2a2db50cb609353f0bd8485710f70289b0020.boutiques",
     name="@GetAfniView",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__GET_AFNI_VIEW_METADATA = Metadata(
 
 
 VGetAfniViewParameters = typing.TypedDict('VGetAfniViewParameters', {
-    "__STYXTYPE__": typing.Literal["@GetAfniView"],
+    "@type": typing.NotRequired[typing.Literal["afni/@GetAfniView"]],
+    "dataset_name": str,
+})
+VGetAfniViewParametersTagged = typing.TypedDict('VGetAfniViewParametersTagged', {
+    "@type": typing.Literal["afni/@GetAfniView"],
     "dataset_name": str,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@GetAfniView": v__get_afni_view_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@GetAfniView": v__get_afni_view_outputs,
-    }.get(t)
 
 
 class VGetAfniViewOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__get_afni_view(...)`.
+    Output object returned when calling `VGetAfniViewParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class VGetAfniViewOutputs(typing.NamedTuple):
 
 def v__get_afni_view_params(
     dataset_name: str,
-) -> VGetAfniViewParameters:
+) -> VGetAfniViewParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +46,7 @@ def v__get_afni_view_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@GetAfniView",
+        "@type": "afni/@GetAfniView",
         "dataset_name": dataset_name,
     }
     return params
@@ -95,7 +67,7 @@ def v__get_afni_view_cargs(
     """
     cargs = []
     cargs.append("@GetAfniView")
-    cargs.append(params.get("dataset_name"))
+    cargs.append(params.get("dataset_name", None))
     return cargs
 
 
@@ -121,9 +93,11 @@ def v__get_afni_view_outputs(
 
 def v__get_afni_view_execute(
     params: VGetAfniViewParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> VGetAfniViewOutputs:
     """
+    @GetAfniView
+    
     A tool to retrieve the AFNI view of a given dataset name.
     
     Author: AFNI Developers
@@ -132,10 +106,12 @@ def v__get_afni_view_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `VGetAfniViewOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__GET_AFNI_VIEW_METADATA)
     params = execution.params(params)
     cargs = v__get_afni_view_cargs(params, execution)
     ret = v__get_afni_view_outputs(params, execution)
@@ -148,6 +124,8 @@ def v__get_afni_view(
     runner: Runner | None = None,
 ) -> VGetAfniViewOutputs:
     """
+    @GetAfniView
+    
     A tool to retrieve the AFNI view of a given dataset name.
     
     Author: AFNI Developers
@@ -161,18 +139,16 @@ def v__get_afni_view(
     Returns:
         NamedTuple of outputs (described in `VGetAfniViewOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__GET_AFNI_VIEW_METADATA)
     params = v__get_afni_view_params(
         dataset_name=dataset_name,
     )
-    return v__get_afni_view_execute(params, execution)
+    return v__get_afni_view_execute(params, runner)
 
 
 __all__ = [
     "VGetAfniViewOutputs",
-    "VGetAfniViewParameters",
     "V__GET_AFNI_VIEW_METADATA",
     "v__get_afni_view",
+    "v__get_afni_view_execute",
     "v__get_afni_view_params",
 ]