niwrap-afni 0.6.3__py3-none-any.whl → 0.7.0__py3-none-any.whl

niwrap_afni/afni/v_4swap.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V_4SWAP_METADATA = Metadata(
-    id="6e3e99b3074cad6cf80c60e9ae896765217a911d.boutiques",
+    id="722d60c043acc3fcd3bc12bb469248826f8c2128.boutiques",
     name="4swap",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,20 @@ V_4SWAP_METADATA = Metadata(
 
 
 V4swapParameters = typing.TypedDict('V4swapParameters', {
-    "__STYXTYPE__": typing.Literal["4swap"],
+    "@type": typing.NotRequired[typing.Literal["afni/4swap"]],
+    "files": list[InputPathType],
+    "quiet": bool,
+})
+V4swapParametersTagged = typing.TypedDict('V4swapParametersTagged', {
+    "@type": typing.Literal["afni/4swap"],
     "files": list[InputPathType],
     "quiet": bool,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "4swap": v_4swap_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-    }.get(t)
 
 
 class V4swapOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v_4swap(...)`.
+    Output object returned when calling `V4swapParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -62,7 +36,7 @@ class V4swapOutputs(typing.NamedTuple):
 def v_4swap_params(
     files: list[InputPathType],
     quiet: bool = False,
-) -> V4swapParameters:
+) -> V4swapParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +47,7 @@ def v_4swap_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "4swap",
+        "@type": "afni/4swap",
         "files": files,
         "quiet": quiet,
     }
@@ -95,8 +69,8 @@ def v_4swap_cargs(
     """
     cargs = []
     cargs.append("4swap")
-    cargs.extend([execution.input_file(f) for f in params.get("files")])
-    if params.get("quiet"):
+    cargs.extend([execution.input_file(f) for f in params.get("files", None)])
+    if params.get("quiet", False):
         cargs.append("-q")
     return cargs
 
@@ -122,9 +96,11 @@ def v_4swap_outputs(
 
 def v_4swap_execute(
     params: V4swapParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V4swapOutputs:
     """
+    4swap
+    
     Swaps byte quadruples on the listed files.
     
     Author: AFNI Developers
@@ -133,10 +109,12 @@ def v_4swap_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V4swapOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V_4SWAP_METADATA)
     params = execution.params(params)
     cargs = v_4swap_cargs(params, execution)
     ret = v_4swap_outputs(params, execution)
@@ -150,6 +128,8 @@ def v_4swap(
     runner: Runner | None = None,
 ) -> V4swapOutputs:
     """
+    4swap
+    
     Swaps byte quadruples on the listed files.
     
     Author: AFNI Developers
@@ -163,19 +143,17 @@ def v_4swap(
     Returns:
         NamedTuple of outputs (described in `V4swapOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V_4SWAP_METADATA)
     params = v_4swap_params(
         files=files,
         quiet=quiet,
     )
-    return v_4swap_execute(params, execution)
+    return v_4swap_execute(params, runner)
 
 
 __all__ = [
     "V4swapOutputs",
-    "V4swapParameters",
     "V_4SWAP_METADATA",
     "v_4swap",
+    "v_4swap_execute",
     "v_4swap_params",
 ]

niwrap_afni/afni/v__1d_diff_mag.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__1D_DIFF_MAG_METADATA = Metadata(
-    id="341c08e9d208f0097d8fc91a023300220946a0bb.boutiques",
+    id="79a9dcf4877ee3724d0c39add1bc50f6b62d7601.boutiques",
     name="@1dDiffMag",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__1D_DIFF_MAG_METADATA = Metadata(
 
 
 V1dDiffMagParameters = typing.TypedDict('V1dDiffMagParameters', {
-    "__STYXTYPE__": typing.Literal["@1dDiffMag"],
+    "@type": typing.NotRequired[typing.Literal["afni/@1dDiffMag"]],
+    "infile": InputPathType,
+})
+V1dDiffMagParametersTagged = typing.TypedDict('V1dDiffMagParametersTagged', {
+    "@type": typing.Literal["afni/@1dDiffMag"],
     "infile": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@1dDiffMag": v__1d_diff_mag_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@1dDiffMag": v__1d_diff_mag_outputs,
-    }.get(t)
 
 
 class V1dDiffMagOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__1d_diff_mag(...)`.
+    Output object returned when calling `V1dDiffMagParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class V1dDiffMagOutputs(typing.NamedTuple):
 
 def v__1d_diff_mag_params(
     infile: InputPathType,
-) -> V1dDiffMagParameters:
+) -> V1dDiffMagParametersTagged:
     """
     Build parameters.
     
@@ -74,7 +46,7 @@ def v__1d_diff_mag_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@1dDiffMag",
+        "@type": "afni/@1dDiffMag",
         "infile": infile,
     }
     return params
@@ -95,7 +67,7 @@ def v__1d_diff_mag_cargs(
     """
     cargs = []
     cargs.append("@1dDiffMag")
-    cargs.append(execution.input_file(params.get("infile")))
+    cargs.append(execution.input_file(params.get("infile", None)))
     return cargs
 
 
@@ -121,9 +93,11 @@ def v__1d_diff_mag_outputs(
 
 def v__1d_diff_mag_execute(
     params: V1dDiffMagParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V1dDiffMagOutputs:
     """
+    @1dDiffMag
+    
     Computes a magnitude estimate of the first differences of a 1D file.
     
     Author: AFNI Developers
@@ -132,10 +106,12 @@ def v__1d_diff_mag_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V1dDiffMagOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__1D_DIFF_MAG_METADATA)
     params = execution.params(params)
     cargs = v__1d_diff_mag_cargs(params, execution)
     ret = v__1d_diff_mag_outputs(params, execution)
@@ -148,6 +124,8 @@ def v__1d_diff_mag(
     runner: Runner | None = None,
 ) -> V1dDiffMagOutputs:
     """
+    @1dDiffMag
+    
     Computes a magnitude estimate of the first differences of a 1D file.
     
     Author: AFNI Developers
@@ -161,18 +139,16 @@ def v__1d_diff_mag(
     Returns:
         NamedTuple of outputs (described in `V1dDiffMagOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__1D_DIFF_MAG_METADATA)
     params = v__1d_diff_mag_params(
         infile=infile,
     )
-    return v__1d_diff_mag_execute(params, execution)
+    return v__1d_diff_mag_execute(params, runner)
 
 
 __all__ = [
     "V1dDiffMagOutputs",
-    "V1dDiffMagParameters",
     "V__1D_DIFF_MAG_METADATA",
     "v__1d_diff_mag",
+    "v__1d_diff_mag_execute",
     "v__1d_diff_mag_params",
 ]

niwrap_afni/afni/v__2dwarper.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__2DWARPER_METADATA = Metadata(
-    id="b6c02c8c4a9b76cbaaf9e4aced956bd2e4543b06.boutiques",
+    id="a639e33d0f62eeb0f9bae0c30caea70084cc4a6e.boutiques",
     name="@2dwarper",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,46 +14,18 @@ V__2DWARPER_METADATA = Metadata(
 
 
 V2dwarperParameters = typing.TypedDict('V2dwarperParameters', {
-    "__STYXTYPE__": typing.Literal["@2dwarper"],
+    "@type": typing.NotRequired[typing.Literal["afni/@2dwarper"]],
+    "input_dataset": InputPathType,
+})
+V2dwarperParametersTagged = typing.TypedDict('V2dwarperParametersTagged', {
+    "@type": typing.Literal["afni/@2dwarper"],
     "input_dataset": InputPathType,
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@2dwarper": v__2dwarper_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@2dwarper": v__2dwarper_outputs,
-    }.get(t)
 
 
 class V2dwarperOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__2dwarper(...)`.
+    Output object returned when calling `V2dwarperParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -63,7 +35,7 @@ class V2dwarperOutputs(typing.NamedTuple):
 
 def v__2dwarper_params(
     input_dataset: InputPathType,
-) -> V2dwarperParameters:
+) -> V2dwarperParametersTagged:
     """
     Build parameters.
     
@@ -73,7 +45,7 @@ def v__2dwarper_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@2dwarper",
+        "@type": "afni/@2dwarper",
         "input_dataset": input_dataset,
     }
     return params
@@ -94,7 +66,7 @@ def v__2dwarper_cargs(
     """
     cargs = []
     cargs.append("@2dwarper")
-    cargs.append(execution.input_file(params.get("input_dataset")))
+    cargs.append(execution.input_file(params.get("input_dataset", None)))
     return cargs
 
 
@@ -120,9 +92,11 @@ def v__2dwarper_outputs(
 
 def v__2dwarper_execute(
     params: V2dwarperParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V2dwarperOutputs:
     """
+    @2dwarper
+    
     2D image warping tool.
     
     Author: AFNI Developers
@@ -131,10 +105,12 @@ def v__2dwarper_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V2dwarperOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__2DWARPER_METADATA)
     params = execution.params(params)
     cargs = v__2dwarper_cargs(params, execution)
     ret = v__2dwarper_outputs(params, execution)
@@ -147,6 +123,8 @@ def v__2dwarper(
     runner: Runner | None = None,
 ) -> V2dwarperOutputs:
     """
+    @2dwarper
+    
     2D image warping tool.
     
     Author: AFNI Developers
@@ -159,18 +137,16 @@ def v__2dwarper(
     Returns:
         NamedTuple of outputs (described in `V2dwarperOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__2DWARPER_METADATA)
     params = v__2dwarper_params(
         input_dataset=input_dataset,
     )
-    return v__2dwarper_execute(params, execution)
+    return v__2dwarper_execute(params, runner)
 
 
 __all__ = [
     "V2dwarperOutputs",
-    "V2dwarperParameters",
     "V__2DWARPER_METADATA",
     "v__2dwarper",
+    "v__2dwarper_execute",
     "v__2dwarper_params",
 ]

niwrap_afni/afni/v__2dwarper_allin.py

@@ -6,7 +6,7 @@ import pathlib
 from styxdefs import *
 
 V__2DWARPER_ALLIN_METADATA = Metadata(
-    id="5efa97bed55735b8ea9da82ded571c3714029a2b.boutiques",
+    id="225a74d08261c6d90001aa24a11526d518df01f8.boutiques",
     name="@2dwarper.Allin",
     package="afni",
     container_image_tag="afni/afni_make_build:AFNI_24.2.06",
@@ -14,48 +14,22 @@ V__2DWARPER_ALLIN_METADATA = Metadata(
 
 
 V2dwarperAllinParameters = typing.TypedDict('V2dwarperAllinParameters', {
-    "__STYXTYPE__": typing.Literal["@2dwarper.Allin"],
+    "@type": typing.NotRequired[typing.Literal["afni/@2dwarper.Allin"]],
+    "input_prefix": str,
+    "mask_prefix": typing.NotRequired[str | None],
+    "output_prefix": typing.NotRequired[str | None],
+})
+V2dwarperAllinParametersTagged = typing.TypedDict('V2dwarperAllinParametersTagged', {
+    "@type": typing.Literal["afni/@2dwarper.Allin"],
     "input_prefix": str,
     "mask_prefix": typing.NotRequired[str | None],
     "output_prefix": typing.NotRequired[str | None],
 })
-
-
-def dyn_cargs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build cargs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build cargs function.
-    """
-    return {
-        "@2dwarper.Allin": v__2dwarper_allin_cargs,
-    }.get(t)
-
-
-def dyn_outputs(
-    t: str,
-) -> typing.Any:
-    """
-    Get build outputs function by command type.
-    
-    Args:
-        t: Command type.
-    Returns:
-        Build outputs function.
-    """
-    return {
-        "@2dwarper.Allin": v__2dwarper_allin_outputs,
-    }.get(t)
 
 
 class V2dwarperAllinOutputs(typing.NamedTuple):
     """
-    Output object returned when calling `v__2dwarper_allin(...)`.
+    Output object returned when calling `V2dwarperAllinParameters(...)`.
     """
     root: OutputPathType
     """Output root folder. This is the root folder for all outputs."""
@@ -69,7 +43,7 @@ def v__2dwarper_allin_params(
     input_prefix: str,
     mask_prefix: str | None = None,
     output_prefix: str | None = None,
-) -> V2dwarperAllinParameters:
+) -> V2dwarperAllinParametersTagged:
     """
     Build parameters.
     
@@ -81,7 +55,7 @@ def v__2dwarper_allin_params(
         Parameter dictionary
     """
     params = {
-        "__STYXTYPE__": "@2dwarper.Allin",
+        "@type": "afni/@2dwarper.Allin",
         "input_prefix": input_prefix,
     }
     if mask_prefix is not None:
@@ -106,16 +80,16 @@ def v__2dwarper_allin_cargs(
     """
     cargs = []
     cargs.append("@2dwarper.Allin")
-    cargs.append(params.get("input_prefix"))
-    if params.get("mask_prefix") is not None:
+    cargs.append(params.get("input_prefix", None))
+    if params.get("mask_prefix", None) is not None:
         cargs.extend([
             "-mask",
-            params.get("mask_prefix")
+            params.get("mask_prefix", None)
         ])
-    if params.get("output_prefix") is not None:
+    if params.get("output_prefix", None) is not None:
         cargs.extend([
             "-prefix",
-            params.get("output_prefix")
+            params.get("output_prefix", None)
         ])
     return cargs
 
@@ -135,17 +109,19 @@ def v__2dwarper_allin_outputs(
     """
     ret = V2dwarperAllinOutputs(
         root=execution.output_file("."),
-        reg_output=execution.output_file(params.get("output_prefix") + "_reg+orig.HEAD") if (params.get("output_prefix") is not None) else None,
-        param_files=execution.output_file(params.get("output_prefix") + "_param_*.1D") if (params.get("output_prefix") is not None) else None,
+        reg_output=execution.output_file(params.get("output_prefix", None) + "_reg+orig.HEAD") if (params.get("output_prefix") is not None) else None,
+        param_files=execution.output_file(params.get("output_prefix", None) + "_param.1D") if (params.get("output_prefix") is not None) else None,
     )
     return ret
 
 
 def v__2dwarper_allin_execute(
     params: V2dwarperAllinParameters,
-    execution: Execution,
+    runner: Runner | None = None,
 ) -> V2dwarperAllinOutputs:
     """
+    @2dwarper.Allin
+    
     Perform 2D registration on each slice of a 3D+time dataset, and combine the
     results.
     
@@ -155,10 +131,12 @@ def v__2dwarper_allin_execute(
     
     Args:
         params: The parameters.
-        execution: The execution object.
+        runner: Command runner.
     Returns:
         NamedTuple of outputs (described in `V2dwarperAllinOutputs`).
     """
+    runner = runner or get_global_runner()
+    execution = runner.start_execution(V__2DWARPER_ALLIN_METADATA)
     params = execution.params(params)
     cargs = v__2dwarper_allin_cargs(params, execution)
     ret = v__2dwarper_allin_outputs(params, execution)
@@ -173,6 +151,8 @@ def v__2dwarper_allin(
     runner: Runner | None = None,
 ) -> V2dwarperAllinOutputs:
     """
+    @2dwarper.Allin
+    
     Perform 2D registration on each slice of a 3D+time dataset, and combine the
     results.
     
@@ -188,20 +168,18 @@ def v__2dwarper_allin(
     Returns:
         NamedTuple of outputs (described in `V2dwarperAllinOutputs`).
     """
-    runner = runner or get_global_runner()
-    execution = runner.start_execution(V__2DWARPER_ALLIN_METADATA)
     params = v__2dwarper_allin_params(
         input_prefix=input_prefix,
         mask_prefix=mask_prefix,
         output_prefix=output_prefix,
     )
-    return v__2dwarper_allin_execute(params, execution)
+    return v__2dwarper_allin_execute(params, runner)
 
 
 __all__ = [
     "V2dwarperAllinOutputs",
-    "V2dwarperAllinParameters",
     "V__2DWARPER_ALLIN_METADATA",
     "v__2dwarper_allin",
+    "v__2dwarper_allin_execute",
     "v__2dwarper_allin_params",
 ]